# periodic boundary conditions along all three dimensions boundary p p p # Set neighbor skin variable neigh_skin equal 2.0*${_u_distance} variable neigh_skin equal 2.0*1 neighbor ${neigh_skin} bin neighbor 2 bin # create a supercell with cubic lattice (fcc, bcc, sc, or diamond) # using 10*10*10 conventional (orthogonal) unit cells variable latticeconst_converted equal 3.438187837600708*${_u_distance} variable latticeconst_converted equal 3.438187837600708*1 lattice bcc ${latticeconst_converted} lattice bcc 3.43818783760071 Lattice spacing in x,y,z = 3.4381878 3.4381878 3.4381878 region simbox block 0 10 0 10 0 10 units lattice create_box 1 simbox Created orthogonal box = (0 0 0) to (34.381878 34.381878 34.381878) 1 by 1 by 1 MPI processor grid create_atoms 1 box Created 2000 atoms using lattice units in orthogonal box = (0 0 0) to (34.381878 34.381878 34.381878) create_atoms CPU = 0.000 seconds variable mass_converted equal 6.941*${_u_mass} variable mass_converted equal 6.941*1 kim_interactions Li WARNING: 'kim_' has been renamed to 'kim '. Please update your input. kim interactions Li #=== BEGIN kim interactions ================================== variable kim_update equal 0 variable kim_periodic equal 1 pair_style reax/c NULL safezone 2.0 mincap 100 pair_coeff * * /tmp/kim-shared-library-parameter-file-directory-XXXXXXlcACTt/ffield_LiS_PCCP2015.txt Li WARNING: Van der Waals parameters for element LI indicate inner wall+shielding, but earlier atoms indicate a different van der Waals method. This may cause division-by-zero errors. Keeping van der Waals setting for earlier atoms. (src/REAXFF/reaxff_ffield.cpp:251) fix reaxqeq all qeq/reax 1 0.0 10.0 1.0e-6 reax/c #=== END kim interactions ==================================== mass 1 ${mass_converted} mass 1 6.941 # initial volume variable v equal vol # assign formula variable V0 equal ${v} # evaluate initial value variable V0 equal 40643.2846693283 variable V0_metal equal ${V0}/(${_u_distance}*${_u_distance}*${_u_distance}) variable V0_metal equal 40643.2846693283/(${_u_distance}*${_u_distance}*${_u_distance}) variable V0_metal equal 40643.2846693283/(1*${_u_distance}*${_u_distance}) variable V0_metal equal 40643.2846693283/(1*1*${_u_distance}) variable V0_metal equal 40643.2846693283/(1*1*1) variable V0_metal_times1000 equal ${V0_metal}*1000 variable V0_metal_times1000 equal 40643.2846693283*1000 print "Initial system volume: ${V0_metal} Angstroms^3" Initial system volume: 40643.2846693283 Angstroms^3 # set the time step to 0.001 picoseconds variable timestep_converted equal 0.001*${_u_time} variable timestep_converted equal 0.001*1000 timestep ${timestep_converted} timestep 1 variable temp_converted equal 273.15*${_u_temperature} variable temp_converted equal 273.15*1 variable Tdamp_converted equal 0.1*${_u_time} variable Tdamp_converted equal 0.1*1000 variable press_converted equal 0.0*${_u_pressure} variable press_converted equal 0.0*0.986923266716013 variable Pdamp_converted equal 1*${_u_time} variable Pdamp_converted equal 1*1000 # create initial velocities consistent with the chosen temperature velocity all create ${temp_converted} 17 mom yes rot yes velocity all create 273.15 17 mom yes rot yes # set NPT ensemble for all atoms fix ensemble all npt temp ${temp_converted} ${temp_converted} ${Tdamp_converted} iso ${press_converted} ${press_converted} ${Pdamp_converted} fix ensemble all npt temp 273.15 ${temp_converted} ${Tdamp_converted} iso ${press_converted} ${press_converted} ${Pdamp_converted} fix ensemble all npt temp 273.15 273.15 ${Tdamp_converted} iso ${press_converted} ${press_converted} ${Pdamp_converted} fix ensemble all npt temp 273.15 273.15 100 iso ${press_converted} ${press_converted} ${Pdamp_converted} fix ensemble all npt temp 273.15 273.15 100 iso 0 ${press_converted} ${Pdamp_converted} fix ensemble all npt temp 273.15 273.15 100 iso 0 0 ${Pdamp_converted} fix ensemble all npt temp 273.15 273.15 100 iso 0 0 1000 # compute the time averages of pressure, temperature, and volume, respectively # ignore the first 5000 timesteps variable etotal_metal equal etotal/${_u_energy} variable etotal_metal equal etotal/23.0605480120695 variable pe_metal equal pe/${_u_energy} variable pe_metal equal pe/23.0605480120695 variable T_metal equal temp/${_u_temperature} variable T_metal equal temp/1 variable V_metal equal vol/(${_u_distance}*${_u_distance}*${_u_distance}) variable V_metal equal vol/(1*${_u_distance}*${_u_distance}) variable V_metal equal vol/(1*1*${_u_distance}) variable V_metal equal vol/(1*1*1) variable P_metal equal press/${_u_pressure} variable P_metal equal press/0.986923266716013 fix avgmyTemp all ave/time 5 20 100 v_T_metal ave running start 5000 fix avgmyPress all ave/time 5 20 100 v_P_metal ave running start 5000 fix avgmyVol all ave/time 5 20 100 v_V_metal ave running start 5000 # extract fix quantities into variables so they can be used in if-else logic later. variable T equal f_avgmyTemp variable P equal f_avgmyPress variable V equal f_avgmyVol # set error bounds for temperature and pressure in original metal units (K and bar) variable T_low equal "273.15 - 0.2" variable T_up equal "273.15 + 0.2" variable P_low equal "0.0 - 0.2" variable P_up equal "0.0 + 0.2" # print to logfile every 1000 timesteps thermo_style custom step etotal v_etotal_metal pe v_pe_metal temp v_T_metal vol v_V_metal press v_P_metal thermo 1000 # Run a simulation for at most 2000*1000 timesteps. At each 1000th time step, check # whether the temperature and pressure have converged. If yes, break. label top variable a loop 2000 run 1000 CITE-CITE-CITE-CITE-CITE-CITE-CITE-CITE-CITE-CITE-CITE-CITE-CITE Your simulation uses code contributions which should be cited: - OpenKIM: https://doi.org/10.1007/s11837-011-0102-6 @Article{tadmor:elliott:2011, author = {E. B. Tadmor and R. S. Elliott and J. P. Sethna and R. E. Miller and C. A. Becker}, title = {The potential of atomistic simulations and the {K}nowledgebase of {I}nteratomic {M}odels}, journal = {{JOM}}, year = 2011, volume = 63, number = 17, pages = {17}, doi = {10.1007/s11837-011-0102-6} } - OpenKIM potential: https://openkim.org/cite/SM_058492438145_000#item-citation - pair reaxff command: @Article{Aktulga12, author = {H. M. Aktulga, J. C. Fogarty, S. A. Pandit, A. Y. Grama}, title = {Parallel reactive molecular dynamics: Numerical methods and algorithmic techniques}, journal = {Parallel Computing}, year = 2012, volume = 38, pages = {245--259} } - fix qeq/reaxff command: @Article{Aktulga12, author = {H. M. Aktulga, J. C. Fogarty, S. A. Pandit, A. Y. Grama}, title = {Parallel reactive molecular dynamics: Numerical methods and algorithmic techniques}, journal = {Parallel Computing}, year = 2012, volume = 38, pages = {245--259} } CITE-CITE-CITE-CITE-CITE-CITE-CITE-CITE-CITE-CITE-CITE-CITE-CITE Neighbor list info ... update every 1 steps, delay 10 steps, check yes max neighbors/atom: 4000, page size: 100000 master list distance cutoff = 12 ghost atom cutoff = 12 binsize = 6, bins = 6 6 6 2 neighbor lists, perpetual/occasional/extra = 2 0 0 (1) pair reax/c, perpetual attributes: half, newton off, ghost pair build: half/bin/newtoff/ghost stencil: full/ghost/bin/3d bin: standard (2) fix qeq/reax, perpetual, copy from (1) attributes: half, newton off pair build: copy stencil: none bin: none Per MPI rank memory allocation (min/avg/max) = 247.6 | 247.6 | 247.6 Mbytes Step TotEng v_etotal_metal PotEng v_pe_metal Temp v_T_metal Volume v_V_metal Press v_P_metal 0 -73780.905 -3199.4428 -75408.508 -3270.0224 273.15 273.15 40643.285 40643.285 1830.5819 1854.8371 1000 -71973.844 -3121.0812 -73606.968 -3191.9002 274.07679 274.07679 40478.929 40478.929 199.31268 201.95357 Loop time of 239.933 on 1 procs for 1000 steps with 2000 atoms Performance: 0.360 ns/day, 66.648 hours/ns, 4.168 timesteps/s 57.0% CPU use with 1 MPI tasks x 1 OpenMP threads MPI task timing breakdown: Section | min time | avg time | max time |%varavg| %total --------------------------------------------------------------- Pair | 215.43 | 215.43 | 215.43 | 0.0 | 89.79 Neigh | 0 | 0 | 0 | 0.0 | 0.00 Comm | 0.047327 | 0.047327 | 0.047327 | 0.0 | 0.02 Output | 0.00012156 | 0.00012156 | 0.00012156 | 0.0 | 0.00 Modify | 24.436 | 24.436 | 24.436 | 0.0 | 10.18 Other | | 0.0219 | | | 0.01 Nlocal: 2000 ave 2000 max 2000 min Histogram: 1 0 0 0 0 0 0 0 0 0 Nghost: 7009 ave 7009 max 7009 min Histogram: 1 0 0 0 0 0 0 0 0 0 Neighs: 453912 ave 453912 max 453912 min Histogram: 1 0 0 0 0 0 0 0 0 0 Total # of neighbors = 453912 Ave neighs/atom = 226.956 Neighbor list builds = 0 Dangerous builds = 0 if "${V_metal}>${V0_metal_times1000}" then "jump SELF unstable" if "${T}>${T_low} && ${T}<${T_up} && ${P}>${P_low} && ${P}<${P_up}" then "jump SELF break" print "flag: Temp = ${T}, Press = ${P}" flag: Temp = 0, Press = 0 next a jump SELF top variable a loop 2000 run 1000 Per MPI rank memory allocation (min/avg/max) = 248.6 | 248.6 | 248.6 Mbytes Step TotEng v_etotal_metal PotEng v_pe_metal Temp v_T_metal Volume v_V_metal Press v_P_metal 1000 -71973.844 -3121.0812 -73606.968 -3191.9002 274.07679 274.07679 40478.929 40478.929 199.31268 201.95357 2000 -72044.763 -3124.1566 -73660.774 -3194.2335 271.20465 271.20465 40393.843 40393.843 631.33445 639.69963 Loop time of 315.554 on 1 procs for 1000 steps with 2000 atoms Performance: 0.274 ns/day, 87.654 hours/ns, 3.169 timesteps/s 45.8% CPU use with 1 MPI tasks x 1 OpenMP threads MPI task timing breakdown: Section | min time | avg time | max time |%varavg| %total --------------------------------------------------------------- Pair | 281.61 | 281.61 | 281.61 | 0.0 | 89.24 Neigh | 2.8019 | 2.8019 | 2.8019 | 0.0 | 0.89 Comm | 0.10223 | 0.10223 | 0.10223 | 0.0 | 0.03 Output | 9.4849e-05 | 9.4849e-05 | 9.4849e-05 | 0.0 | 0.00 Modify | 31.026 | 31.026 | 31.026 | 0.0 | 9.83 Other | | 0.01092 | | | 0.00 Nlocal: 2000 ave 2000 max 2000 min Histogram: 1 0 0 0 0 0 0 0 0 0 Nghost: 7727 ave 7727 max 7727 min Histogram: 1 0 0 0 0 0 0 0 0 0 Neighs: 459344 ave 459344 max 459344 min Histogram: 1 0 0 0 0 0 0 0 0 0 Total # of neighbors = 459344 Ave neighs/atom = 229.672 Neighbor list builds = 19 Dangerous builds = 0 if "${V_metal}>${V0_metal_times1000}" then "jump SELF unstable" if "${T}>${T_low} && ${T}<${T_up} && ${P}>${P_low} && ${P}<${P_up}" then "jump SELF break" print "flag: Temp = ${T}, Press = ${P}" flag: Temp = 0, Press = 0 next a jump SELF top variable a loop 2000 run 1000 Per MPI rank memory allocation (min/avg/max) = 248.6 | 248.6 | 248.6 Mbytes Step TotEng v_etotal_metal PotEng v_pe_metal Temp v_T_metal Volume v_V_metal Press v_P_metal 2000 -72044.763 -3124.1566 -73660.774 -3194.2335 271.20465 271.20465 40393.843 40393.843 631.33445 639.69963 3000 -72019.684 -3123.0691 -73672.448 -3194.7397 277.37272 277.37272 40749.968 40749.968 -968.55748 -981.39087 Loop time of 291.49 on 1 procs for 1000 steps with 2000 atoms Performance: 0.296 ns/day, 80.969 hours/ns, 3.431 timesteps/s 49.9% CPU use with 1 MPI tasks x 1 OpenMP threads MPI task timing breakdown: Section | min time | avg time | max time |%varavg| %total --------------------------------------------------------------- Pair | 260.07 | 260.07 | 260.07 | 0.0 | 89.22 Neigh | 2.5018 | 2.5018 | 2.5018 | 0.0 | 0.86 Comm | 0.041609 | 0.041609 | 0.041609 | 0.0 | 0.01 Output | 9.0219e-05 | 9.0219e-05 | 9.0219e-05 | 0.0 | 0.00 Modify | 28.835 | 28.835 | 28.835 | 0.0 | 9.89 Other | | 0.039 | | | 0.01 Nlocal: 2000 ave 2000 max 2000 min Histogram: 1 0 0 0 0 0 0 0 0 0 Nghost: 7644 ave 7644 max 7644 min Histogram: 1 0 0 0 0 0 0 0 0 0 Neighs: 458592 ave 458592 max 458592 min Histogram: 1 0 0 0 0 0 0 0 0 0 Total # of neighbors = 458592 Ave neighs/atom = 229.296 Neighbor list builds = 20 Dangerous builds = 0 if "${V_metal}>${V0_metal_times1000}" then "jump SELF unstable" if "${T}>${T_low} && ${T}<${T_up} && ${P}>${P_low} && ${P}<${P_up}" then "jump SELF break" print "flag: Temp = ${T}, Press = ${P}" flag: Temp = 0, Press = 0 next a jump SELF top variable a loop 2000 run 1000 Per MPI rank memory allocation (min/avg/max) = 248.5 | 248.5 | 248.5 Mbytes Step TotEng v_etotal_metal PotEng v_pe_metal Temp v_T_metal Volume v_V_metal Press v_P_metal 3000 -72019.684 -3123.0691 -73672.448 -3194.7397 277.37272 277.37272 40749.968 40749.968 -968.55748 -981.39087 4000 -72017.246 -3122.9633 -73614.42 -3192.2234 268.04354 268.04354 40604.122 40604.122 -381.84107 -386.90046 Loop time of 271.852 on 1 procs for 1000 steps with 2000 atoms Performance: 0.318 ns/day, 75.514 hours/ns, 3.678 timesteps/s 53.5% CPU use with 1 MPI tasks x 1 OpenMP threads MPI task timing breakdown: Section | min time | avg time | max time |%varavg| %total --------------------------------------------------------------- Pair | 242.36 | 242.36 | 242.36 | 0.0 | 89.15 Neigh | 2.2725 | 2.2725 | 2.2725 | 0.0 | 0.84 Comm | 0.054696 | 0.054696 | 0.054696 | 0.0 | 0.02 Output | 9.4487e-05 | 9.4487e-05 | 9.4487e-05 | 0.0 | 0.00 Modify | 27.153 | 27.153 | 27.153 | 0.0 | 9.99 Other | | 0.01049 | | | 0.00 Nlocal: 2000 ave 2000 max 2000 min Histogram: 1 0 0 0 0 0 0 0 0 0 Nghost: 7698 ave 7698 max 7698 min Histogram: 1 0 0 0 0 0 0 0 0 0 Neighs: 460074 ave 460074 max 460074 min Histogram: 1 0 0 0 0 0 0 0 0 0 Total # of neighbors = 460074 Ave neighs/atom = 230.037 Neighbor list builds = 20 Dangerous builds = 0 if "${V_metal}>${V0_metal_times1000}" then "jump SELF unstable" if "${T}>${T_low} && ${T}<${T_up} && ${P}>${P_low} && ${P}<${P_up}" then "jump SELF break" print "flag: Temp = ${T}, Press = ${P}" flag: Temp = 0, Press = 0 next a jump SELF top variable a loop 2000 run 1000 Per MPI rank memory allocation (min/avg/max) = 248.5 | 248.5 | 248.5 Mbytes Step TotEng v_etotal_metal PotEng v_pe_metal Temp v_T_metal Volume v_V_metal Press v_P_metal 4000 -72017.246 -3122.9633 -73614.42 -3192.2234 268.04354 268.04354 40604.122 40604.122 -381.84107 -386.90046 5000 -72033.406 -3123.6641 -73719.486 -3196.7794 282.96398 282.96398 40433.666 40433.666 504.46344 511.14758 Loop time of 280.989 on 1 procs for 1000 steps with 2000 atoms Performance: 0.307 ns/day, 78.053 hours/ns, 3.559 timesteps/s 51.9% CPU use with 1 MPI tasks x 1 OpenMP threads MPI task timing breakdown: Section | min time | avg time | max time |%varavg| %total --------------------------------------------------------------- Pair | 250.92 | 250.92 | 250.92 | 0.0 | 89.30 Neigh | 2.637 | 2.637 | 2.637 | 0.0 | 0.94 Comm | 0.033899 | 0.033899 | 0.033899 | 0.0 | 0.01 Output | 5.6827e-05 | 5.6827e-05 | 5.6827e-05 | 0.0 | 0.00 Modify | 27.391 | 27.391 | 27.391 | 0.0 | 9.75 Other | | 0.01075 | | | 0.00 Nlocal: 2000 ave 2000 max 2000 min Histogram: 1 0 0 0 0 0 0 0 0 0 Nghost: 7823 ave 7823 max 7823 min Histogram: 1 0 0 0 0 0 0 0 0 0 Neighs: 461108 ave 461108 max 461108 min Histogram: 1 0 0 0 0 0 0 0 0 0 Total # of neighbors = 461108 Ave neighs/atom = 230.554 Neighbor list builds = 20 Dangerous builds = 0 if "${V_metal}>${V0_metal_times1000}" then "jump SELF unstable" if "${T}>${T_low} && ${T}<${T_up} && ${P}>${P_low} && ${P}<${P_up}" then "jump SELF break" print "flag: Temp = ${T}, Press = ${P}" flag: Temp = 273.28637375444, Press = 345.780682501311 next a jump SELF top variable a loop 2000 run 1000 Per MPI rank memory allocation (min/avg/max) = 248.5 | 248.5 | 248.5 Mbytes Step TotEng v_etotal_metal PotEng v_pe_metal Temp v_T_metal Volume v_V_metal Press v_P_metal 5000 -72033.406 -3123.6641 -73719.486 -3196.7794 282.96398 282.96398 40433.666 40433.666 504.46344 511.14758 6000 -72023.744 -3123.2451 -73617.465 -3192.3554 267.46389 267.46389 40518.677 40518.677 -69.070891 -69.98608 Loop time of 278.003 on 1 procs for 1000 steps with 2000 atoms Performance: 0.311 ns/day, 77.223 hours/ns, 3.597 timesteps/s 52.3% CPU use with 1 MPI tasks x 1 OpenMP threads MPI task timing breakdown: Section | min time | avg time | max time |%varavg| %total --------------------------------------------------------------- Pair | 248.69 | 248.69 | 248.69 | 0.0 | 89.46 Neigh | 2.1422 | 2.1422 | 2.1422 | 0.0 | 0.77 Comm | 0.092236 | 0.092236 | 0.092236 | 0.0 | 0.03 Output | 0.016927 | 0.016927 | 0.016927 | 0.0 | 0.01 Modify | 27.039 | 27.039 | 27.039 | 0.0 | 9.73 Other | | 0.02152 | | | 0.01 Nlocal: 2000 ave 2000 max 2000 min Histogram: 1 0 0 0 0 0 0 0 0 0 Nghost: 7766 ave 7766 max 7766 min Histogram: 1 0 0 0 0 0 0 0 0 0 Neighs: 460678 ave 460678 max 460678 min Histogram: 1 0 0 0 0 0 0 0 0 0 Total # of neighbors = 460678 Ave neighs/atom = 230.339 Neighbor list builds = 19 Dangerous builds = 0 if "${V_metal}>${V0_metal_times1000}" then "jump SELF unstable" if "${T}>${T_low} && ${T}<${T_up} && ${P}>${P_low} && ${P}<${P_up}" then "jump SELF break" print "flag: Temp = ${T}, Press = ${P}" flag: Temp = 271.553573085944, Press = -9.08937368455585 next a jump SELF top variable a loop 2000 run 1000 Per MPI rank memory allocation (min/avg/max) = 248.6 | 248.6 | 248.6 Mbytes Step TotEng v_etotal_metal PotEng v_pe_metal Temp v_T_metal Volume v_V_metal Press v_P_metal 6000 -72023.744 -3123.2451 -73617.465 -3192.3554 267.46389 267.46389 40518.677 40518.677 -69.070891 -69.98608 7000 -72056.962 -3124.6856 -73701.297 -3195.9907 275.95819 275.95819 40658.73 40658.73 -444.35318 -450.24086 Loop time of 240.971 on 1 procs for 1000 steps with 2000 atoms Performance: 0.359 ns/day, 66.937 hours/ns, 4.150 timesteps/s 60.4% CPU use with 1 MPI tasks x 1 OpenMP threads MPI task timing breakdown: Section | min time | avg time | max time |%varavg| %total --------------------------------------------------------------- Pair | 215.55 | 215.55 | 215.55 | 0.0 | 89.45 Neigh | 1.9255 | 1.9255 | 1.9255 | 0.0 | 0.80 Comm | 0.033584 | 0.033584 | 0.033584 | 0.0 | 0.01 Output | 5.0385e-05 | 5.0385e-05 | 5.0385e-05 | 0.0 | 0.00 Modify | 23.451 | 23.451 | 23.451 | 0.0 | 9.73 Other | | 0.01074 | | | 0.00 Nlocal: 2000 ave 2000 max 2000 min Histogram: 1 0 0 0 0 0 0 0 0 0 Nghost: 7716 ave 7716 max 7716 min Histogram: 1 0 0 0 0 0 0 0 0 0 Neighs: 459269 ave 459269 max 459269 min Histogram: 1 0 0 0 0 0 0 0 0 0 Total # of neighbors = 459269 Ave neighs/atom = 229.6345 Neighbor list builds = 19 Dangerous builds = 0 if "${V_metal}>${V0_metal_times1000}" then "jump SELF unstable" if "${T}>${T_low} && ${T}<${T_up} && ${P}>${P_low} && ${P}<${P_up}" then "jump SELF break" print "flag: Temp = ${T}, Press = ${P}" flag: Temp = 271.801441383194, Press = 15.3348112000442 next a jump SELF top variable a loop 2000 run 1000 Per MPI rank memory allocation (min/avg/max) = 248.5 | 248.5 | 248.5 Mbytes Step TotEng v_etotal_metal PotEng v_pe_metal Temp v_T_metal Volume v_V_metal Press v_P_metal 7000 -72056.962 -3124.6856 -73701.297 -3195.9907 275.95819 275.95819 40658.73 40658.73 -444.35318 -450.24086 8000 -71936.114 -3119.4451 -73563.296 -3190.0064 273.07945 273.07945 40509.986 40509.986 -118.1038 -119.66867 Loop time of 208.479 on 1 procs for 1000 steps with 2000 atoms Performance: 0.414 ns/day, 57.911 hours/ns, 4.797 timesteps/s 70.8% CPU use with 1 MPI tasks x 1 OpenMP threads MPI task timing breakdown: Section | min time | avg time | max time |%varavg| %total --------------------------------------------------------------- Pair | 186.31 | 186.31 | 186.31 | 0.0 | 89.37 Neigh | 1.8265 | 1.8265 | 1.8265 | 0.0 | 0.88 Comm | 0.04951 | 0.04951 | 0.04951 | 0.0 | 0.02 Output | 6.2487e-05 | 6.2487e-05 | 6.2487e-05 | 0.0 | 0.00 Modify | 20.284 | 20.284 | 20.284 | 0.0 | 9.73 Other | | 0.01108 | | | 0.01 Nlocal: 2000 ave 2000 max 2000 min Histogram: 1 0 0 0 0 0 0 0 0 0 Nghost: 7829 ave 7829 max 7829 min Histogram: 1 0 0 0 0 0 0 0 0 0 Neighs: 461072 ave 461072 max 461072 min Histogram: 1 0 0 0 0 0 0 0 0 0 Total # of neighbors = 461072 Ave neighs/atom = 230.536 Neighbor list builds = 20 Dangerous builds = 0 if "${V_metal}>${V0_metal_times1000}" then "jump SELF unstable" if "${T}>${T_low} && ${T}<${T_up} && ${P}>${P_low} && ${P}<${P_up}" then "jump SELF break" print "flag: Temp = ${T}, Press = ${P}" flag: Temp = 272.338942269275, Press = 11.4287303488104 next a jump SELF top variable a loop 2000 run 1000 Per MPI rank memory allocation (min/avg/max) = 248.6 | 248.6 | 248.6 Mbytes Step TotEng v_etotal_metal PotEng v_pe_metal Temp v_T_metal Volume v_V_metal Press v_P_metal 8000 -71936.114 -3119.4451 -73563.296 -3190.0064 273.07945 273.07945 40509.986 40509.986 -118.1038 -119.66867 9000 -72028.609 -3123.4561 -73686.652 -3195.3557 278.2587 278.2587 40500.478 40500.478 101.92499 103.2755 Loop time of 175.919 on 1 procs for 1000 steps with 2000 atoms Performance: 0.491 ns/day, 48.866 hours/ns, 5.684 timesteps/s 85.1% CPU use with 1 MPI tasks x 1 OpenMP threads MPI task timing breakdown: Section | min time | avg time | max time |%varavg| %total --------------------------------------------------------------- Pair | 157.86 | 157.86 | 157.86 | 0.0 | 89.73 Neigh | 1.1687 | 1.1687 | 1.1687 | 0.0 | 0.66 Comm | 0.054756 | 0.054756 | 0.054756 | 0.0 | 0.03 Output | 6.3249e-05 | 6.3249e-05 | 6.3249e-05 | 0.0 | 0.00 Modify | 16.826 | 16.826 | 16.826 | 0.0 | 9.56 Other | | 0.01129 | | | 0.01 Nlocal: 2000 ave 2000 max 2000 min Histogram: 1 0 0 0 0 0 0 0 0 0 Nghost: 7826 ave 7826 max 7826 min Histogram: 1 0 0 0 0 0 0 0 0 0 Neighs: 460454 ave 460454 max 460454 min Histogram: 1 0 0 0 0 0 0 0 0 0 Total # of neighbors = 460454 Ave neighs/atom = 230.227 Neighbor list builds = 18 Dangerous builds = 0 if "${V_metal}>${V0_metal_times1000}" then "jump SELF unstable" if "${T}>${T_low} && ${T}<${T_up} && ${P}>${P_low} && ${P}<${P_up}" then "jump SELF break" print "flag: Temp = ${T}, Press = ${P}" flag: Temp = 272.733629110694, Press = 8.63997057644915 next a jump SELF top variable a loop 2000 run 1000 Per MPI rank memory allocation (min/avg/max) = 248.5 | 248.5 | 248.5 Mbytes Step TotEng v_etotal_metal PotEng v_pe_metal Temp v_T_metal Volume v_V_metal Press v_P_metal 9000 -72028.609 -3123.4561 -73686.652 -3195.3557 278.2587 278.2587 40500.478 40500.478 101.92499 103.2755 10000 -71910.593 -3118.3384 -73629.055 -3192.858 288.39845 288.39845 40429.148 40429.148 453.67484 459.68603 Loop time of 176.383 on 1 procs for 1000 steps with 2000 atoms Performance: 0.490 ns/day, 48.995 hours/ns, 5.669 timesteps/s 85.8% CPU use with 1 MPI tasks x 1 OpenMP threads MPI task timing breakdown: Section | min time | avg time | max time |%varavg| %total --------------------------------------------------------------- Pair | 157.95 | 157.95 | 157.95 | 0.0 | 89.55 Neigh | 1.3639 | 1.3639 | 1.3639 | 0.0 | 0.77 Comm | 0.034395 | 0.034395 | 0.034395 | 0.0 | 0.02 Output | 6.3019e-05 | 6.3019e-05 | 6.3019e-05 | 0.0 | 0.00 Modify | 17.024 | 17.024 | 17.024 | 0.0 | 9.65 Other | | 0.01189 | | | 0.01 Nlocal: 2000 ave 2000 max 2000 min Histogram: 1 0 0 0 0 0 0 0 0 0 Nghost: 7872 ave 7872 max 7872 min Histogram: 1 0 0 0 0 0 0 0 0 0 Neighs: 461588 ave 461588 max 461588 min Histogram: 1 0 0 0 0 0 0 0 0 0 Total # of neighbors = 461588 Ave neighs/atom = 230.794 Neighbor list builds = 18 Dangerous builds = 0 if "${V_metal}>${V0_metal_times1000}" then "jump SELF unstable" if "${T}>${T_low} && ${T}<${T_up} && ${P}>${P_low} && ${P}<${P_up}" then "jump SELF break" print "flag: Temp = ${T}, Press = ${P}" flag: Temp = 273.246783160985, Press = 4.03175715803432 next a jump SELF top variable a loop 2000 run 1000 Per MPI rank memory allocation (min/avg/max) = 248.6 | 248.6 | 248.6 Mbytes Step TotEng v_etotal_metal PotEng v_pe_metal Temp v_T_metal Volume v_V_metal Press v_P_metal 10000 -71910.593 -3118.3384 -73629.055 -3192.858 288.39845 288.39845 40429.148 40429.148 453.67484 459.68603 11000 -72071.688 -3125.3242 -73679.432 -3195.0426 269.81737 269.81737 40607.423 40607.423 -466.2995 -472.47797 Loop time of 156.428 on 1 procs for 1000 steps with 2000 atoms Performance: 0.552 ns/day, 43.452 hours/ns, 6.393 timesteps/s 97.0% CPU use with 1 MPI tasks x 1 OpenMP threads MPI task timing breakdown: Section | min time | avg time | max time |%varavg| %total --------------------------------------------------------------- Pair | 140.05 | 140.05 | 140.05 | 0.0 | 89.53 Neigh | 1.2834 | 1.2834 | 1.2834 | 0.0 | 0.82 Comm | 0.03469 | 0.03469 | 0.03469 | 0.0 | 0.02 Output | 5.4753e-05 | 5.4753e-05 | 5.4753e-05 | 0.0 | 0.00 Modify | 15.046 | 15.046 | 15.046 | 0.0 | 9.62 Other | | 0.0111 | | | 0.01 Nlocal: 2000 ave 2000 max 2000 min Histogram: 1 0 0 0 0 0 0 0 0 0 Nghost: 7802 ave 7802 max 7802 min Histogram: 1 0 0 0 0 0 0 0 0 0 Neighs: 459390 ave 459390 max 459390 min Histogram: 1 0 0 0 0 0 0 0 0 0 Total # of neighbors = 459390 Ave neighs/atom = 229.695 Neighbor list builds = 21 Dangerous builds = 0 if "${V_metal}>${V0_metal_times1000}" then "jump SELF unstable" if "${T}>${T_low} && ${T}<${T_up} && ${P}>${P_low} && ${P}<${P_up}" then "jump SELF break" print "flag: Temp = ${T}, Press = ${P}" flag: Temp = 273.401844522003, Press = -0.439811185395664 next a jump SELF top variable a loop 2000 run 1000 Per MPI rank memory allocation (min/avg/max) = 248.5 | 248.5 | 248.5 Mbytes Step TotEng v_etotal_metal PotEng v_pe_metal Temp v_T_metal Volume v_V_metal Press v_P_metal 11000 -72071.688 -3125.3242 -73679.432 -3195.0426 269.81737 269.81737 40607.423 40607.423 -466.2995 -472.47797 12000 -72009.84 -3122.6422 -73647.13 -3193.6418 274.77588 274.77588 40611.273 40611.273 -420.09876 -425.66506 Loop time of 169.507 on 1 procs for 1000 steps with 2000 atoms Performance: 0.510 ns/day, 47.085 hours/ns, 5.899 timesteps/s 89.2% CPU use with 1 MPI tasks x 1 OpenMP threads MPI task timing breakdown: Section | min time | avg time | max time |%varavg| %total --------------------------------------------------------------- Pair | 151.6 | 151.6 | 151.6 | 0.0 | 89.43 Neigh | 1.3475 | 1.3475 | 1.3475 | 0.0 | 0.79 Comm | 0.04546 | 0.04546 | 0.04546 | 0.0 | 0.03 Output | 5.6516e-05 | 5.6516e-05 | 5.6516e-05 | 0.0 | 0.00 Modify | 16.496 | 16.496 | 16.496 | 0.0 | 9.73 Other | | 0.02209 | | | 0.01 Nlocal: 2000 ave 2000 max 2000 min Histogram: 1 0 0 0 0 0 0 0 0 0 Nghost: 7824 ave 7824 max 7824 min Histogram: 1 0 0 0 0 0 0 0 0 0 Neighs: 460232 ave 460232 max 460232 min Histogram: 1 0 0 0 0 0 0 0 0 0 Total # of neighbors = 460232 Ave neighs/atom = 230.116 Neighbor list builds = 20 Dangerous builds = 0 if "${V_metal}>${V0_metal_times1000}" then "jump SELF unstable" if "${T}>${T_low} && ${T}<${T_up} && ${P}>${P_low} && ${P}<${P_up}" then "jump SELF break" print "flag: Temp = ${T}, Press = ${P}" flag: Temp = 273.262427420264, Press = 10.5483259711425 next a jump SELF top variable a loop 2000 run 1000 Per MPI rank memory allocation (min/avg/max) = 248.5 | 248.5 | 248.5 Mbytes Step TotEng v_etotal_metal PotEng v_pe_metal Temp v_T_metal Volume v_V_metal Press v_P_metal 12000 -72009.84 -3122.6422 -73647.13 -3193.6418 274.77588 274.77588 40611.273 40611.273 -420.09876 -425.66506 13000 -72091.547 -3126.1853 -73698.807 -3195.8827 269.73606 269.73606 40428.406 40428.406 449.35812 455.31212 Loop time of 159.074 on 1 procs for 1000 steps with 2000 atoms Performance: 0.543 ns/day, 44.187 hours/ns, 6.286 timesteps/s 98.7% CPU use with 1 MPI tasks x 1 OpenMP threads MPI task timing breakdown: Section | min time | avg time | max time |%varavg| %total --------------------------------------------------------------- Pair | 142.27 | 142.27 | 142.27 | 0.0 | 89.44 Neigh | 1.3063 | 1.3063 | 1.3063 | 0.0 | 0.82 Comm | 0.035741 | 0.035741 | 0.035741 | 0.0 | 0.02 Output | 5.1697e-05 | 5.1697e-05 | 5.1697e-05 | 0.0 | 0.00 Modify | 15.447 | 15.447 | 15.447 | 0.0 | 9.71 Other | | 0.01155 | | | 0.01 Nlocal: 2000 ave 2000 max 2000 min Histogram: 1 0 0 0 0 0 0 0 0 0 Nghost: 7798 ave 7798 max 7798 min Histogram: 1 0 0 0 0 0 0 0 0 0 Neighs: 460532 ave 460532 max 460532 min Histogram: 1 0 0 0 0 0 0 0 0 0 Total # of neighbors = 460532 Ave neighs/atom = 230.266 Neighbor list builds = 19 Dangerous builds = 0 if "${V_metal}>${V0_metal_times1000}" then "jump SELF unstable" if "${T}>${T_low} && ${T}<${T_up} && ${P}>${P_low} && ${P}<${P_up}" then "jump SELF break" print "flag: Temp = ${T}, Press = ${P}" flag: Temp = 272.984390054143, Press = 3.23871525544155 next a jump SELF top variable a loop 2000 run 1000 Per MPI rank memory allocation (min/avg/max) = 248.5 | 248.5 | 248.5 Mbytes Step TotEng v_etotal_metal PotEng v_pe_metal Temp v_T_metal Volume v_V_metal Press v_P_metal 13000 -72091.547 -3126.1853 -73698.807 -3195.8827 269.73606 269.73606 40428.406 40428.406 449.35812 455.31212 14000 -72023.929 -3123.2531 -73629.611 -3192.8821 269.47137 269.47137 40530.845 40530.845 -100.03152 -101.35694 Loop time of 159.652 on 1 procs for 1000 steps with 2000 atoms Performance: 0.541 ns/day, 44.348 hours/ns, 6.264 timesteps/s 99.5% CPU use with 1 MPI tasks x 1 OpenMP threads MPI task timing breakdown: Section | min time | avg time | max time |%varavg| %total --------------------------------------------------------------- Pair | 142.77 | 142.77 | 142.77 | 0.0 | 89.42 Neigh | 1.1709 | 1.1709 | 1.1709 | 0.0 | 0.73 Comm | 0.03683 | 0.03683 | 0.03683 | 0.0 | 0.02 Output | 7.1234e-05 | 7.1234e-05 | 7.1234e-05 | 0.0 | 0.00 Modify | 15.666 | 15.666 | 15.666 | 0.0 | 9.81 Other | | 0.01168 | | | 0.01 Nlocal: 2000 ave 2000 max 2000 min Histogram: 1 0 0 0 0 0 0 0 0 0 Nghost: 7693 ave 7693 max 7693 min Histogram: 1 0 0 0 0 0 0 0 0 0 Neighs: 459457 ave 459457 max 459457 min Histogram: 1 0 0 0 0 0 0 0 0 0 Total # of neighbors = 459457 Ave neighs/atom = 229.7285 Neighbor list builds = 18 Dangerous builds = 0 if "${V_metal}>${V0_metal_times1000}" then "jump SELF unstable" if "${T}>${T_low} && ${T}<${T_up} && ${P}>${P_low} && ${P}<${P_up}" then "jump SELF break" print "flag: Temp = ${T}, Press = ${P}" flag: Temp = 272.728135405221, Press = 0.993274712477718 next a jump SELF top variable a loop 2000 run 1000 Per MPI rank memory allocation (min/avg/max) = 248.5 | 248.5 | 248.5 Mbytes Step TotEng v_etotal_metal PotEng v_pe_metal Temp v_T_metal Volume v_V_metal Press v_P_metal 14000 -72023.929 -3123.2531 -73629.611 -3192.8821 269.47137 269.47137 40530.845 40530.845 -100.03152 -101.35694 15000 -72042.265 -3124.0482 -73666.825 -3194.4959 272.63954 272.63954 40566.05 40566.05 -239.45073 -242.62345 Loop time of 162.73 on 1 procs for 1000 steps with 2000 atoms Performance: 0.531 ns/day, 45.203 hours/ns, 6.145 timesteps/s 99.6% CPU use with 1 MPI tasks x 1 OpenMP threads MPI task timing breakdown: Section | min time | avg time | max time |%varavg| %total --------------------------------------------------------------- Pair | 145.46 | 145.46 | 145.46 | 0.0 | 89.39 Neigh | 1.318 | 1.318 | 1.318 | 0.0 | 0.81 Comm | 0.03706 | 0.03706 | 0.03706 | 0.0 | 0.02 Output | 5.2128e-05 | 5.2128e-05 | 5.2128e-05 | 0.0 | 0.00 Modify | 15.903 | 15.903 | 15.903 | 0.0 | 9.77 Other | | 0.01147 | | | 0.01 Nlocal: 2000 ave 2000 max 2000 min Histogram: 1 0 0 0 0 0 0 0 0 0 Nghost: 7663 ave 7663 max 7663 min Histogram: 1 0 0 0 0 0 0 0 0 0 Neighs: 459286 ave 459286 max 459286 min Histogram: 1 0 0 0 0 0 0 0 0 0 Total # of neighbors = 459286 Ave neighs/atom = 229.643 Neighbor list builds = 20 Dangerous builds = 0 if "${V_metal}>${V0_metal_times1000}" then "jump SELF unstable" if "${T}>${T_low} && ${T}<${T_up} && ${P}>${P_low} && ${P}<${P_up}" then "jump SELF break" print "flag: Temp = ${T}, Press = ${P}" flag: Temp = 272.803601290819, Press = 2.9411714097476 next a jump SELF top variable a loop 2000 run 1000 Per MPI rank memory allocation (min/avg/max) = 248.5 | 248.5 | 248.5 Mbytes Step TotEng v_etotal_metal PotEng v_pe_metal Temp v_T_metal Volume v_V_metal Press v_P_metal 15000 -72042.265 -3124.0482 -73666.825 -3194.4959 272.63954 272.63954 40566.05 40566.05 -239.45073 -242.62345 16000 -72088.348 -3126.0466 -73657.486 -3194.0909 263.33822 263.33822 40490.808 40490.808 23.402515 23.712598 Loop time of 159.803 on 1 procs for 1000 steps with 2000 atoms Performance: 0.541 ns/day, 44.390 hours/ns, 6.258 timesteps/s 99.5% CPU use with 1 MPI tasks x 1 OpenMP threads MPI task timing breakdown: Section | min time | avg time | max time |%varavg| %total --------------------------------------------------------------- Pair | 143.62 | 143.62 | 143.62 | 0.0 | 89.88 Neigh | 1.12 | 1.12 | 1.12 | 0.0 | 0.70 Comm | 0.036489 | 0.036489 | 0.036489 | 0.0 | 0.02 Output | 5.6416e-05 | 5.6416e-05 | 5.6416e-05 | 0.0 | 0.00 Modify | 15.011 | 15.011 | 15.011 | 0.0 | 9.39 Other | | 0.01224 | | | 0.01 Nlocal: 2000 ave 2000 max 2000 min Histogram: 1 0 0 0 0 0 0 0 0 0 Nghost: 7754 ave 7754 max 7754 min Histogram: 1 0 0 0 0 0 0 0 0 0 Neighs: 460039 ave 460039 max 460039 min Histogram: 1 0 0 0 0 0 0 0 0 0 Total # of neighbors = 460039 Ave neighs/atom = 230.0195 Neighbor list builds = 18 Dangerous builds = 0 if "${V_metal}>${V0_metal_times1000}" then "jump SELF unstable" if "${T}>${T_low} && ${T}<${T_up} && ${P}>${P_low} && ${P}<${P_up}" then "jump SELF break" print "flag: Temp = ${T}, Press = ${P}" flag: Temp = 272.601899356689, Press = 2.55513677177794 next a jump SELF top variable a loop 2000 run 1000 Per MPI rank memory allocation (min/avg/max) = 248.5 | 248.5 | 248.5 Mbytes Step TotEng v_etotal_metal PotEng v_pe_metal Temp v_T_metal Volume v_V_metal Press v_P_metal 16000 -72088.348 -3126.0466 -73657.486 -3194.0909 263.33822 263.33822 40490.808 40490.808 23.402515 23.712598 17000 -72004.267 -3122.4005 -73637.738 -3193.2345 274.13484 274.13484 40533.16 40533.16 -47.540076 -48.169982 Loop time of 158.377 on 1 procs for 1000 steps with 2000 atoms Performance: 0.546 ns/day, 43.994 hours/ns, 6.314 timesteps/s 99.6% CPU use with 1 MPI tasks x 1 OpenMP threads MPI task timing breakdown: Section | min time | avg time | max time |%varavg| %total --------------------------------------------------------------- Pair | 142.85 | 142.85 | 142.85 | 0.0 | 90.20 Neigh | 1.0729 | 1.0729 | 1.0729 | 0.0 | 0.68 Comm | 0.036441 | 0.036441 | 0.036441 | 0.0 | 0.02 Output | 6.3389e-05 | 6.3389e-05 | 6.3389e-05 | 0.0 | 0.00 Modify | 14.403 | 14.403 | 14.403 | 0.0 | 9.09 Other | | 0.01338 | | | 0.01 Nlocal: 2000 ave 2000 max 2000 min Histogram: 1 0 0 0 0 0 0 0 0 0 Nghost: 7758 ave 7758 max 7758 min Histogram: 1 0 0 0 0 0 0 0 0 0 Neighs: 459974 ave 459974 max 459974 min Histogram: 1 0 0 0 0 0 0 0 0 0 Total # of neighbors = 459974 Ave neighs/atom = 229.987 Neighbor list builds = 18 Dangerous builds = 0 if "${V_metal}>${V0_metal_times1000}" then "jump SELF unstable" if "${T}>${T_low} && ${T}<${T_up} && ${P}>${P_low} && ${P}<${P_up}" then "jump SELF break" print "flag: Temp = ${T}, Press = ${P}" flag: Temp = 272.57971709703, Press = 1.23586234709748 next a jump SELF top variable a loop 2000 run 1000 Per MPI rank memory allocation (min/avg/max) = 248.5 | 248.5 | 248.5 Mbytes Step TotEng v_etotal_metal PotEng v_pe_metal Temp v_T_metal Volume v_V_metal Press v_P_metal 17000 -72004.267 -3122.4005 -73637.738 -3193.2345 274.13484 274.13484 40533.16 40533.16 -47.540076 -48.169982 18000 -71962.912 -3120.6072 -73585.12 -3190.9528 272.24475 272.24475 40607.926 40607.926 -341.15179 -345.67205 Loop time of 142.819 on 1 procs for 1000 steps with 2000 atoms Performance: 0.605 ns/day, 39.672 hours/ns, 7.002 timesteps/s 99.7% CPU use with 1 MPI tasks x 1 OpenMP threads MPI task timing breakdown: Section | min time | avg time | max time |%varavg| %total --------------------------------------------------------------- Pair | 127.56 | 127.56 | 127.56 | 0.0 | 89.31 Neigh | 1.1157 | 1.1157 | 1.1157 | 0.0 | 0.78 Comm | 0.032817 | 0.032817 | 0.032817 | 0.0 | 0.02 Output | 8.2966e-05 | 8.2966e-05 | 8.2966e-05 | 0.0 | 0.00 Modify | 14.105 | 14.105 | 14.105 | 0.0 | 9.88 Other | | 0.01062 | | | 0.01 Nlocal: 2000 ave 2000 max 2000 min Histogram: 1 0 0 0 0 0 0 0 0 0 Nghost: 7672 ave 7672 max 7672 min Histogram: 1 0 0 0 0 0 0 0 0 0 Neighs: 459551 ave 459551 max 459551 min Histogram: 1 0 0 0 0 0 0 0 0 0 Total # of neighbors = 459551 Ave neighs/atom = 229.7755 Neighbor list builds = 19 Dangerous builds = 0 if "${V_metal}>${V0_metal_times1000}" then "jump SELF unstable" if "${T}>${T_low} && ${T}<${T_up} && ${P}>${P_low} && ${P}<${P_up}" then "jump SELF break" print "flag: Temp = ${T}, Press = ${P}" flag: Temp = 272.552688026025, Press = 2.27645471330569 next a jump SELF top variable a loop 2000 run 1000 Per MPI rank memory allocation (min/avg/max) = 248.5 | 248.5 | 248.5 Mbytes Step TotEng v_etotal_metal PotEng v_pe_metal Temp v_T_metal Volume v_V_metal Press v_P_metal 18000 -71962.912 -3120.6072 -73585.12 -3190.9528 272.24475 272.24475 40607.926 40607.926 -341.15179 -345.67205 19000 -72050.902 -3124.4228 -73659.766 -3194.1897 270.00523 270.00523 40436.854 40436.854 355.02081 359.72484 Loop time of 146.799 on 1 procs for 1000 steps with 2000 atoms Performance: 0.589 ns/day, 40.778 hours/ns, 6.812 timesteps/s 99.6% CPU use with 1 MPI tasks x 1 OpenMP threads MPI task timing breakdown: Section | min time | avg time | max time |%varavg| %total --------------------------------------------------------------- Pair | 131.42 | 131.42 | 131.42 | 0.0 | 89.52 Neigh | 1.1227 | 1.1227 | 1.1227 | 0.0 | 0.76 Comm | 0.037484 | 0.037484 | 0.037484 | 0.0 | 0.03 Output | 6.2037e-05 | 6.2037e-05 | 6.2037e-05 | 0.0 | 0.00 Modify | 14.209 | 14.209 | 14.209 | 0.0 | 9.68 Other | | 0.01265 | | | 0.01 Nlocal: 2000 ave 2000 max 2000 min Histogram: 1 0 0 0 0 0 0 0 0 0 Nghost: 7743 ave 7743 max 7743 min Histogram: 1 0 0 0 0 0 0 0 0 0 Neighs: 461334 ave 461334 max 461334 min Histogram: 1 0 0 0 0 0 0 0 0 0 Total # of neighbors = 461334 Ave neighs/atom = 230.667 Neighbor list builds = 19 Dangerous builds = 0 if "${V_metal}>${V0_metal_times1000}" then "jump SELF unstable" if "${T}>${T_low} && ${T}<${T_up} && ${P}>${P_low} && ${P}<${P_up}" then "jump SELF break" print "flag: Temp = ${T}, Press = ${P}" flag: Temp = 272.717354192341, Press = 4.57292252448171 next a jump SELF top variable a loop 2000 run 1000 Per MPI rank memory allocation (min/avg/max) = 248.6 | 248.6 | 248.6 Mbytes Step TotEng v_etotal_metal PotEng v_pe_metal Temp v_T_metal Volume v_V_metal Press v_P_metal 19000 -72050.902 -3124.4228 -73659.766 -3194.1897 270.00523 270.00523 40436.854 40436.854 355.02081 359.72484 20000 -71970.631 -3120.9419 -73648.327 -3193.6937 281.55702 281.55702 40384.692 40384.692 632.17388 640.55018 Loop time of 146.238 on 1 procs for 1000 steps with 2000 atoms Performance: 0.591 ns/day, 40.622 hours/ns, 6.838 timesteps/s 99.7% CPU use with 1 MPI tasks x 1 OpenMP threads MPI task timing breakdown: Section | min time | avg time | max time |%varavg| %total --------------------------------------------------------------- Pair | 130.93 | 130.93 | 130.93 | 0.0 | 89.53 Neigh | 1.1199 | 1.1199 | 1.1199 | 0.0 | 0.77 Comm | 0.035345 | 0.035345 | 0.035345 | 0.0 | 0.02 Output | 6.5713e-05 | 6.5713e-05 | 6.5713e-05 | 0.0 | 0.00 Modify | 14.142 | 14.142 | 14.142 | 0.0 | 9.67 Other | | 0.01177 | | | 0.01 Nlocal: 2000 ave 2000 max 2000 min Histogram: 1 0 0 0 0 0 0 0 0 0 Nghost: 7710 ave 7710 max 7710 min Histogram: 1 0 0 0 0 0 0 0 0 0 Neighs: 459994 ave 459994 max 459994 min Histogram: 1 0 0 0 0 0 0 0 0 0 Total # of neighbors = 459994 Ave neighs/atom = 229.997 Neighbor list builds = 19 Dangerous builds = 0 if "${V_metal}>${V0_metal_times1000}" then "jump SELF unstable" if "${T}>${T_low} && ${T}<${T_up} && ${P}>${P_low} && ${P}<${P_up}" then "jump SELF break" print "flag: Temp = ${T}, Press = ${P}" flag: Temp = 272.85460193815, Press = -0.559215379536933 next a jump SELF top variable a loop 2000 run 1000 Per MPI rank memory allocation (min/avg/max) = 248.6 | 248.6 | 248.6 Mbytes Step TotEng v_etotal_metal PotEng v_pe_metal Temp v_T_metal Volume v_V_metal Press v_P_metal 20000 -71970.631 -3120.9419 -73648.327 -3193.6937 281.55702 281.55702 40384.692 40384.692 632.17388 640.55018 21000 -72049.598 -3124.3662 -73650.57 -3193.791 268.68085 268.68085 40623.551 40623.551 -572.69119 -580.27935 Loop time of 143.419 on 1 procs for 1000 steps with 2000 atoms Performance: 0.602 ns/day, 39.838 hours/ns, 6.973 timesteps/s 99.7% CPU use with 1 MPI tasks x 1 OpenMP threads MPI task timing breakdown: Section | min time | avg time | max time |%varavg| %total --------------------------------------------------------------- Pair | 128.2 | 128.2 | 128.2 | 0.0 | 89.39 Neigh | 1.0592 | 1.0592 | 1.0592 | 0.0 | 0.74 Comm | 0.033105 | 0.033105 | 0.033105 | 0.0 | 0.02 Output | 5.8129e-05 | 5.8129e-05 | 5.8129e-05 | 0.0 | 0.00 Modify | 14.115 | 14.115 | 14.115 | 0.0 | 9.84 Other | | 0.0106 | | | 0.01 Nlocal: 2000 ave 2000 max 2000 min Histogram: 1 0 0 0 0 0 0 0 0 0 Nghost: 7681 ave 7681 max 7681 min Histogram: 1 0 0 0 0 0 0 0 0 0 Neighs: 458808 ave 458808 max 458808 min Histogram: 1 0 0 0 0 0 0 0 0 0 Total # of neighbors = 458808 Ave neighs/atom = 229.404 Neighbor list builds = 18 Dangerous builds = 0 if "${V_metal}>${V0_metal_times1000}" then "jump SELF unstable" if "${T}>${T_low} && ${T}<${T_up} && ${P}>${P_low} && ${P}<${P_up}" then "jump SELF break" print "flag: Temp = ${T}, Press = ${P}" flag: Temp = 272.882661845145, Press = 0.216534275483919 next a jump SELF top variable a loop 2000 run 1000 Per MPI rank memory allocation (min/avg/max) = 248.5 | 248.5 | 248.5 Mbytes Step TotEng v_etotal_metal PotEng v_pe_metal Temp v_T_metal Volume v_V_metal Press v_P_metal 21000 -72049.598 -3124.3662 -73650.57 -3193.791 268.68085 268.68085 40623.551 40623.551 -572.69119 -580.27935 22000 -71945.268 -3119.8421 -73624.838 -3192.6751 281.87146 281.87146 40525.13 40525.13 -57.247162 -58.005687 Loop time of 153.31 on 1 procs for 1000 steps with 2000 atoms Performance: 0.564 ns/day, 42.586 hours/ns, 6.523 timesteps/s 99.7% CPU use with 1 MPI tasks x 1 OpenMP threads MPI task timing breakdown: Section | min time | avg time | max time |%varavg| %total --------------------------------------------------------------- Pair | 137.99 | 137.99 | 137.99 | 0.0 | 90.01 Neigh | 1.0643 | 1.0643 | 1.0643 | 0.0 | 0.69 Comm | 0.034386 | 0.034386 | 0.034386 | 0.0 | 0.02 Output | 6.4552e-05 | 6.4552e-05 | 6.4552e-05 | 0.0 | 0.00 Modify | 14.208 | 14.208 | 14.208 | 0.0 | 9.27 Other | | 0.01185 | | | 0.01 Nlocal: 2000 ave 2000 max 2000 min Histogram: 1 0 0 0 0 0 0 0 0 0 Nghost: 7796 ave 7796 max 7796 min Histogram: 1 0 0 0 0 0 0 0 0 0 Neighs: 460683 ave 460683 max 460683 min Histogram: 1 0 0 0 0 0 0 0 0 0 Total # of neighbors = 460683 Ave neighs/atom = 230.3415 Neighbor list builds = 18 Dangerous builds = 0 if "${V_metal}>${V0_metal_times1000}" then "jump SELF unstable" if "${T}>${T_low} && ${T}<${T_up} && ${P}>${P_low} && ${P}<${P_up}" then "jump SELF break" print "flag: Temp = ${T}, Press = ${P}" flag: Temp = 273.070291575468, Press = 2.08823986541786 next a jump SELF top variable a loop 2000 run 1000 Per MPI rank memory allocation (min/avg/max) = 248.5 | 248.5 | 248.5 Mbytes Step TotEng v_etotal_metal PotEng v_pe_metal Temp v_T_metal Volume v_V_metal Press v_P_metal 22000 -71945.268 -3119.8421 -73624.838 -3192.6751 281.87146 281.87146 40525.13 40525.13 -57.247162 -58.005687 23000 -72043.709 -3124.1109 -73677.721 -3194.9683 274.22569 274.22569 40499.316 40499.316 160.35426 162.47895 Loop time of 148.485 on 1 procs for 1000 steps with 2000 atoms Performance: 0.582 ns/day, 41.246 hours/ns, 6.735 timesteps/s 99.7% CPU use with 1 MPI tasks x 1 OpenMP threads MPI task timing breakdown: Section | min time | avg time | max time |%varavg| %total --------------------------------------------------------------- Pair | 133.18 | 133.18 | 133.18 | 0.0 | 89.69 Neigh | 1.1192 | 1.1192 | 1.1192 | 0.0 | 0.75 Comm | 0.034098 | 0.034098 | 0.034098 | 0.0 | 0.02 Output | 5.9592e-05 | 5.9592e-05 | 5.9592e-05 | 0.0 | 0.00 Modify | 14.138 | 14.138 | 14.138 | 0.0 | 9.52 Other | | 0.01132 | | | 0.01 Nlocal: 2000 ave 2000 max 2000 min Histogram: 1 0 0 0 0 0 0 0 0 0 Nghost: 7701 ave 7701 max 7701 min Histogram: 1 0 0 0 0 0 0 0 0 0 Neighs: 460557 ave 460557 max 460557 min Histogram: 1 0 0 0 0 0 0 0 0 0 Total # of neighbors = 460557 Ave neighs/atom = 230.2785 Neighbor list builds = 19 Dangerous builds = 0 if "${V_metal}>${V0_metal_times1000}" then "jump SELF unstable" if "${T}>${T_low} && ${T}<${T_up} && ${P}>${P_low} && ${P}<${P_up}" then "jump SELF break" print "flag: Temp = ${T}, Press = ${P}" flag: Temp = 273.097114574553, Press = 0.576972728059491 next a jump SELF top variable a loop 2000 run 1000 Per MPI rank memory allocation (min/avg/max) = 248.5 | 248.5 | 248.5 Mbytes Step TotEng v_etotal_metal PotEng v_pe_metal Temp v_T_metal Volume v_V_metal Press v_P_metal 23000 -72043.709 -3124.1109 -73677.721 -3194.9683 274.22569 274.22569 40499.316 40499.316 160.35426 162.47895 24000 -71996.026 -3122.0431 -73609.124 -3191.9937 270.71591 270.71591 40580.027 40580.027 -299.85789 -303.831 Loop time of 143.881 on 1 procs for 1000 steps with 2000 atoms Performance: 0.600 ns/day, 39.967 hours/ns, 6.950 timesteps/s 99.7% CPU use with 1 MPI tasks x 1 OpenMP threads MPI task timing breakdown: Section | min time | avg time | max time |%varavg| %total --------------------------------------------------------------- Pair | 128.59 | 128.59 | 128.59 | 0.0 | 89.37 Neigh | 1.1184 | 1.1184 | 1.1184 | 0.0 | 0.78 Comm | 0.033495 | 0.033495 | 0.033495 | 0.0 | 0.02 Output | 5.9893e-05 | 5.9893e-05 | 5.9893e-05 | 0.0 | 0.00 Modify | 14.132 | 14.132 | 14.132 | 0.0 | 9.82 Other | | 0.01076 | | | 0.01 Nlocal: 2000 ave 2000 max 2000 min Histogram: 1 0 0 0 0 0 0 0 0 0 Nghost: 7690 ave 7690 max 7690 min Histogram: 1 0 0 0 0 0 0 0 0 0 Neighs: 459833 ave 459833 max 459833 min Histogram: 1 0 0 0 0 0 0 0 0 0 Total # of neighbors = 459833 Ave neighs/atom = 229.9165 Neighbor list builds = 19 Dangerous builds = 0 if "${V_metal}>${V0_metal_times1000}" then "jump SELF unstable" if "${T}>${T_low} && ${T}<${T_up} && ${P}>${P_low} && ${P}<${P_up}" then "jump SELF break" print "flag: Temp = ${T}, Press = ${P}" flag: Temp = 273.156598391387, Press = 1.83139067500139 next a jump SELF top variable a loop 2000 run 1000 Per MPI rank memory allocation (min/avg/max) = 248.5 | 248.5 | 248.5 Mbytes Step TotEng v_etotal_metal PotEng v_pe_metal Temp v_T_metal Volume v_V_metal Press v_P_metal 24000 -71996.026 -3122.0431 -73609.124 -3191.9937 270.71591 270.71591 40580.027 40580.027 -299.85789 -303.831 25000 -72037.902 -3123.8591 -73679.58 -3195.0489 275.5122 275.5122 40290.97 40290.97 1060.4448 1074.4957 Loop time of 144.315 on 1 procs for 1000 steps with 2000 atoms Performance: 0.599 ns/day, 40.087 hours/ns, 6.929 timesteps/s 99.7% CPU use with 1 MPI tasks x 1 OpenMP threads MPI task timing breakdown: Section | min time | avg time | max time |%varavg| %total --------------------------------------------------------------- Pair | 129.05 | 129.05 | 129.05 | 0.0 | 89.43 Neigh | 1.1206 | 1.1206 | 1.1206 | 0.0 | 0.78 Comm | 0.033203 | 0.033203 | 0.033203 | 0.0 | 0.02 Output | 5.4433e-05 | 5.4433e-05 | 5.4433e-05 | 0.0 | 0.00 Modify | 14.095 | 14.095 | 14.095 | 0.0 | 9.77 Other | | 0.01062 | | | 0.01 Nlocal: 2000 ave 2000 max 2000 min Histogram: 1 0 0 0 0 0 0 0 0 0 Nghost: 7848 ave 7848 max 7848 min Histogram: 1 0 0 0 0 0 0 0 0 0 Neighs: 462809 ave 462809 max 462809 min Histogram: 1 0 0 0 0 0 0 0 0 0 Total # of neighbors = 462809 Ave neighs/atom = 231.4045 Neighbor list builds = 19 Dangerous builds = 0 if "${V_metal}>${V0_metal_times1000}" then "jump SELF unstable" if "${T}>${T_low} && ${T}<${T_up} && ${P}>${P_low} && ${P}<${P_up}" then "jump SELF break" print "flag: Temp = ${T}, Press = ${P}" flag: Temp = 273.138067139415, Press = 2.84538593109472 next a jump SELF top variable a loop 2000 run 1000 Per MPI rank memory allocation (min/avg/max) = 248.6 | 248.6 | 248.6 Mbytes Step TotEng v_etotal_metal PotEng v_pe_metal Temp v_T_metal Volume v_V_metal Press v_P_metal 25000 -72037.902 -3123.8591 -73679.58 -3195.0489 275.5122 275.5122 40290.97 40290.97 1060.4448 1074.4957 26000 -72090.876 -3126.1562 -73676.128 -3194.8993 266.04258 266.04258 40465.027 40465.027 192.62852 195.18085 Loop time of 144.967 on 1 procs for 1000 steps with 2000 atoms Performance: 0.596 ns/day, 40.269 hours/ns, 6.898 timesteps/s 99.7% CPU use with 1 MPI tasks x 1 OpenMP threads MPI task timing breakdown: Section | min time | avg time | max time |%varavg| %total --------------------------------------------------------------- Pair | 129.64 | 129.64 | 129.64 | 0.0 | 89.43 Neigh | 1.122 | 1.122 | 1.122 | 0.0 | 0.77 Comm | 0.035192 | 0.035192 | 0.035192 | 0.0 | 0.02 Output | 5.7147e-05 | 5.7147e-05 | 5.7147e-05 | 0.0 | 0.00 Modify | 14.16 | 14.16 | 14.16 | 0.0 | 9.77 Other | | 0.01145 | | | 0.01 Nlocal: 2000 ave 2000 max 2000 min Histogram: 1 0 0 0 0 0 0 0 0 0 Nghost: 7728 ave 7728 max 7728 min Histogram: 1 0 0 0 0 0 0 0 0 0 Neighs: 460347 ave 460347 max 460347 min Histogram: 1 0 0 0 0 0 0 0 0 0 Total # of neighbors = 460347 Ave neighs/atom = 230.1735 Neighbor list builds = 19 Dangerous builds = 0 if "${V_metal}>${V0_metal_times1000}" then "jump SELF unstable" if "${T}>${T_low} && ${T}<${T_up} && ${P}>${P_low} && ${P}<${P_up}" then "jump SELF break" print "flag: Temp = ${T}, Press = ${P}" flag: Temp = 273.081456783738, Press = -0.818933803074778 next a jump SELF top variable a loop 2000 run 1000 Per MPI rank memory allocation (min/avg/max) = 248.5 | 248.5 | 248.5 Mbytes Step TotEng v_etotal_metal PotEng v_pe_metal Temp v_T_metal Volume v_V_metal Press v_P_metal 26000 -72090.876 -3126.1562 -73676.128 -3194.8993 266.04258 266.04258 40465.027 40465.027 192.62852 195.18085 27000 -71995.999 -3122.042 -73637.752 -3193.2351 275.52482 275.52482 40614.83 40614.83 -388.59668 -393.74559 Loop time of 149 on 1 procs for 1000 steps with 2000 atoms Performance: 0.580 ns/day, 41.389 hours/ns, 6.711 timesteps/s 99.6% CPU use with 1 MPI tasks x 1 OpenMP threads MPI task timing breakdown: Section | min time | avg time | max time |%varavg| %total --------------------------------------------------------------- Pair | 133.61 | 133.61 | 133.61 | 0.0 | 89.67 Neigh | 1.1285 | 1.1285 | 1.1285 | 0.0 | 0.76 Comm | 0.037501 | 0.037501 | 0.037501 | 0.0 | 0.03 Output | 6.6505e-05 | 6.6505e-05 | 6.6505e-05 | 0.0 | 0.00 Modify | 14.207 | 14.207 | 14.207 | 0.0 | 9.53 Other | | 0.01268 | | | 0.01 Nlocal: 2000 ave 2000 max 2000 min Histogram: 1 0 0 0 0 0 0 0 0 0 Nghost: 7741 ave 7741 max 7741 min Histogram: 1 0 0 0 0 0 0 0 0 0 Neighs: 459917 ave 459917 max 459917 min Histogram: 1 0 0 0 0 0 0 0 0 0 Total # of neighbors = 459917 Ave neighs/atom = 229.9585 Neighbor list builds = 19 Dangerous builds = 0 if "${V_metal}>${V0_metal_times1000}" then "jump SELF unstable" if "${T}>${T_low} && ${T}<${T_up} && ${P}>${P_low} && ${P}<${P_up}" then "jump SELF break" print "flag: Temp = ${T}, Press = ${P}" flag: Temp = 272.980052725987, Press = 0.992027174635063 next a jump SELF top variable a loop 2000 run 1000 Per MPI rank memory allocation (min/avg/max) = 248.5 | 248.5 | 248.5 Mbytes Step TotEng v_etotal_metal PotEng v_pe_metal Temp v_T_metal Volume v_V_metal Press v_P_metal 27000 -71995.999 -3122.042 -73637.752 -3193.2351 275.52482 275.52482 40614.83 40614.83 -388.59668 -393.74559 28000 -72054.166 -3124.5643 -73662.281 -3194.2988 269.87958 269.87958 40511.634 40511.634 61.184217 61.994907 Loop time of 143.625 on 1 procs for 1000 steps with 2000 atoms Performance: 0.602 ns/day, 39.896 hours/ns, 6.963 timesteps/s 99.7% CPU use with 1 MPI tasks x 1 OpenMP threads MPI task timing breakdown: Section | min time | avg time | max time |%varavg| %total --------------------------------------------------------------- Pair | 128.36 | 128.36 | 128.36 | 0.0 | 89.38 Neigh | 1.115 | 1.115 | 1.115 | 0.0 | 0.78 Comm | 0.033272 | 0.033272 | 0.033272 | 0.0 | 0.02 Output | 8.6814e-05 | 8.6814e-05 | 8.6814e-05 | 0.0 | 0.00 Modify | 14.101 | 14.101 | 14.101 | 0.0 | 9.82 Other | | 0.01062 | | | 0.01 Nlocal: 2000 ave 2000 max 2000 min Histogram: 1 0 0 0 0 0 0 0 0 0 Nghost: 7726 ave 7726 max 7726 min Histogram: 1 0 0 0 0 0 0 0 0 0 Neighs: 460869 ave 460869 max 460869 min Histogram: 1 0 0 0 0 0 0 0 0 0 Total # of neighbors = 460869 Ave neighs/atom = 230.4345 Neighbor list builds = 19 Dangerous builds = 0 if "${V_metal}>${V0_metal_times1000}" then "jump SELF unstable" if "${T}>${T_low} && ${T}<${T_up} && ${P}>${P_low} && ${P}<${P_up}" then "jump SELF break" print "flag: Temp = ${T}, Press = ${P}" flag: Temp = 273.013651860121, Press = 2.11708833841531 next a jump SELF top variable a loop 2000 run 1000 Per MPI rank memory allocation (min/avg/max) = 248.5 | 248.5 | 248.5 Mbytes Step TotEng v_etotal_metal PotEng v_pe_metal Temp v_T_metal Volume v_V_metal Press v_P_metal 28000 -72054.166 -3124.5643 -73662.281 -3194.2988 269.87958 269.87958 40511.634 40511.634 61.184217 61.994907 29000 -72006.852 -3122.5126 -73638.505 -3193.2678 273.82977 273.82977 40410.411 40410.411 488.26529 494.7348 Loop time of 143.707 on 1 procs for 1000 steps with 2000 atoms Performance: 0.601 ns/day, 39.919 hours/ns, 6.959 timesteps/s 99.7% CPU use with 1 MPI tasks x 1 OpenMP threads MPI task timing breakdown: Section | min time | avg time | max time |%varavg| %total --------------------------------------------------------------- Pair | 128.39 | 128.39 | 128.39 | 0.0 | 89.34 Neigh | 1.1729 | 1.1729 | 1.1729 | 0.0 | 0.82 Comm | 0.033122 | 0.033122 | 0.033122 | 0.0 | 0.02 Output | 8.8246e-05 | 8.8246e-05 | 8.8246e-05 | 0.0 | 0.00 Modify | 14.101 | 14.101 | 14.101 | 0.0 | 9.81 Other | | 0.01047 | | | 0.01 Nlocal: 2000 ave 2000 max 2000 min Histogram: 1 0 0 0 0 0 0 0 0 0 Nghost: 7739 ave 7739 max 7739 min Histogram: 1 0 0 0 0 0 0 0 0 0 Neighs: 461559 ave 461559 max 461559 min Histogram: 1 0 0 0 0 0 0 0 0 0 Total # of neighbors = 461559 Ave neighs/atom = 230.7795 Neighbor list builds = 20 Dangerous builds = 0 if "${V_metal}>${V0_metal_times1000}" then "jump SELF unstable" if "${T}>${T_low} && ${T}<${T_up} && ${P}>${P_low} && ${P}<${P_up}" then "jump SELF break" print "flag: Temp = ${T}, Press = ${P}" flag: Temp = 273.116590837123, Press = 0.718674161297533 next a jump SELF top variable a loop 2000 run 1000 Per MPI rank memory allocation (min/avg/max) = 248.6 | 248.6 | 248.6 Mbytes Step TotEng v_etotal_metal PotEng v_pe_metal Temp v_T_metal Volume v_V_metal Press v_P_metal 29000 -72006.852 -3122.5126 -73638.505 -3193.2678 273.82977 273.82977 40410.411 40410.411 488.26529 494.7348 30000 -72006.892 -3122.5143 -73622.136 -3192.5579 271.07596 271.07596 40479.924 40479.924 115.42659 116.95599 Loop time of 143.954 on 1 procs for 1000 steps with 2000 atoms Performance: 0.600 ns/day, 39.987 hours/ns, 6.947 timesteps/s 99.7% CPU use with 1 MPI tasks x 1 OpenMP threads MPI task timing breakdown: Section | min time | avg time | max time |%varavg| %total --------------------------------------------------------------- Pair | 128.62 | 128.62 | 128.62 | 0.0 | 89.35 Neigh | 1.1776 | 1.1776 | 1.1776 | 0.0 | 0.82 Comm | 0.033222 | 0.033222 | 0.033222 | 0.0 | 0.02 Output | 5.8019e-05 | 5.8019e-05 | 5.8019e-05 | 0.0 | 0.00 Modify | 14.109 | 14.109 | 14.109 | 0.0 | 9.80 Other | | 0.0105 | | | 0.01 Nlocal: 2000 ave 2000 max 2000 min Histogram: 1 0 0 0 0 0 0 0 0 0 Nghost: 7719 ave 7719 max 7719 min Histogram: 1 0 0 0 0 0 0 0 0 0 Neighs: 460414 ave 460414 max 460414 min Histogram: 1 0 0 0 0 0 0 0 0 0 Total # of neighbors = 460414 Ave neighs/atom = 230.207 Neighbor list builds = 20 Dangerous builds = 0 if "${V_metal}>${V0_metal_times1000}" then "jump SELF unstable" if "${T}>${T_low} && ${T}<${T_up} && ${P}>${P_low} && ${P}<${P_up}" then "jump SELF break" jump SELF break # Write final averaged volume to file if temperature and volume have converged; otherwise wirte a # flag to indicate non-convergence. variable myStep equal step if "${myStep} < 2000000" then "print '${V}' file output/vol_T273.15.out" else "print 'not_converged' file output/vol_T273.15.out" print '${V}' file output/vol_T273.15.out 40519.8131357088 print "LAMMPS calculation completed" LAMMPS calculation completed quit 0