[c406-114:17392] *** Process received signal *** [c406-114:17392] Signal: Segmentation fault (11) [c406-114:17392] Signal code: Address not mapped (1) [c406-114:17392] Failing at address: 0x48 [c406-114:17392] [ 0] /lib/x86_64-linux-gnu/libc.so.6(+0x43090)[0x2b1a2bce4090] [c406-114:17392] [ 1] /lib/x86_64-linux-gnu/libhwloc.so.15(+0x2320a)[0x2b1a2c91020a] [c406-114:17392] [ 2] /lib/x86_64-linux-gnu/libhwloc.so.15(+0x2321c)[0x2b1a2c91021c] [c406-114:17392] [ 3] /lib/x86_64-linux-gnu/libhwloc.so.15(+0x2321c)[0x2b1a2c91021c] [c406-114:17392] [ 4] /lib/x86_64-linux-gnu/libhwloc.so.15(+0x2321c)[0x2b1a2c91021c] [c406-114:17392] [ 5] /lib/x86_64-linux-gnu/libhwloc.so.15(+0x2321c)[0x2b1a2c91021c] [c406-114:17392] [ 6] /lib/x86_64-linux-gnu/libhwloc.so.15(+0x2321c)[0x2b1a2c91021c] [c406-114:17392] [ 7] /lib/x86_64-linux-gnu/libhwloc.so.15(+0x25cef)[0x2b1a2c912cef] [c406-114:17392] [ 8] /lib/x86_64-linux-gnu/libhwloc.so.15(hwloc_topology_load+0x45d)[0x2b1a2c8fc17d] [c406-114:17392] [ 9] /lib/x86_64-linux-gnu/libopen-pal.so.40(opal_hwloc_base_get_topology+0x98c)[0x2b1a2c8b4ffc] [c406-114:17392] [10] /lib/x86_64-linux-gnu/libopen-rte.so.40(orte_ess_base_proc_binding+0x6f5)[0x2b1a2c7d9e55] [c406-114:17392] [11] /usr/lib/x86_64-linux-gnu/openmpi/lib/openmpi3/mca_ess_singleton.so(+0x3ef3)[0x2b1a2ddaeef3] [c406-114:17392] [12] /lib/x86_64-linux-gnu/libopen-rte.so.40(orte_init+0x2ac)[0x2b1a2c8102fc] [c406-114:17392] [13] /lib/x86_64-linux-gnu/libmpi.so.40(ompi_mpi_init+0x263)[0x2b1a2ba57323] [c406-114:17392] [14] /lib/x86_64-linux-gnu/libmpi.so.40(MPI_Init+0x73)[0x2b1a2b9fb073] [c406-114:17392] [15] lammps(+0x1341)[0x55b07413e341] [c406-114:17392] [16] /lib/x86_64-linux-gnu/libc.so.6(__libc_start_main+0xf3)[0x2b1a2bcc5083] [c406-114:17392] [17] lammps(+0x13ee)[0x55b07413e3ee] [c406-114:17392] *** End of error message *** Segmentation fault -------------------------------------------------------------------------- By default, for Open MPI 4.0 and later, infiniband ports on a device are not used by default. The intent is to use UCX for these devices. You can override this policy by setting the btl_openib_allow_ib MCA parameter to true. Local host: c406-114 Local adapter: hfi1_0 Local port: 1 -------------------------------------------------------------------------- -------------------------------------------------------------------------- By default, for Open MPI 4.0 and later, infiniband ports on a device are not used by default. The intent is to use UCX for these devices. You can override this policy by setting the btl_openib_allow_ib MCA parameter to true. Local host: c406-114 Local adapter: hfi1_0 Local port: 1 -------------------------------------------------------------------------- -------------------------------------------------------------------------- By default, for Open MPI 4.0 and later, infiniband ports on a device are not used by default. The intent is to use UCX for these devices. You can override this policy by setting the btl_openib_allow_ib MCA parameter to true. Local host: c406-114 Local adapter: hfi1_0 Local port: 1 -------------------------------------------------------------------------- -------------------------------------------------------------------------- By default, for Open MPI 4.0 and later, infiniband ports on a device are not used by default. The intent is to use UCX for these devices. You can override this policy by setting the btl_openib_allow_ib MCA parameter to true. Local host: c406-114 Local adapter: hfi1_0 Local port: 1 -------------------------------------------------------------------------- -------------------------------------------------------------------------- WARNING: There was an error initializing an OpenFabrics device. Local host: c406-114 Local device: hfi1_0 -------------------------------------------------------------------------- -------------------------------------------------------------------------- WARNING: There was an error initializing an OpenFabrics device. Local host: c406-114 Local device: hfi1_0 -------------------------------------------------------------------------- -------------------------------------------------------------------------- WARNING: There was an error initializing an OpenFabrics device. Local host: c406-114 Local device: hfi1_0 -------------------------------------------------------------------------- -------------------------------------------------------------------------- WARNING: There was an error initializing an OpenFabrics device. Local host: c406-114 Local device: hfi1_0 -------------------------------------------------------------------------- Traceback (most recent call last): File "../../td/LinearThermalExpansionCoeffCubic__TD_522633393614_001/runner", line 343, in alpha = compute_alpha(lmpvolfile, T) File "../../td/LinearThermalExpansionCoeffCubic__TD_522633393614_001/runner", line 180, in compute_alpha with open(fin, "r") as f: FileNotFoundError: [Errno 2] No such file or directory: 'output/vol_T293.15.out' Command exited with non-zero status 1 {"realtime":27716.95,"usertime":79528.10,"systime":46.08,"memmax":66568,"memavg":0}