# periodic boundary conditions along all three dimensions boundary p p p # Set neighbor skin variable neigh_skin equal 2.0*${_u_distance} variable neigh_skin equal 2.0*1 neighbor ${neigh_skin} bin neighbor 2 bin # create a supercell with cubic lattice (fcc, bcc, sc, or diamond) # using 10*10*10 conventional (orthogonal) unit cells variable latticeconst_converted equal 4.044527357816695*${_u_distance} variable latticeconst_converted equal 4.044527357816695*1 lattice fcc ${latticeconst_converted} lattice fcc 4.04452735781669 Lattice spacing in x,y,z = 4.0445274 4.0445274 4.0445274 region simbox block 0 10 0 10 0 10 units lattice create_box 1 simbox Created orthogonal box = (0.0000000 0.0000000 0.0000000) to (40.445274 40.445274 40.445274) 1 by 1 by 1 MPI processor grid create_atoms 1 box Created 4000 atoms using lattice units in orthogonal box = (0.0000000 0.0000000 0.0000000) to (40.445274 40.445274 40.445274) create_atoms CPU = 0.003 seconds variable mass_converted equal 26.981538*${_u_mass} variable mass_converted equal 26.981538*1 kim_interactions Al WARNING: 'kim_' has been renamed to 'kim '. Please update your input. kim interactions Al #=== BEGIN kim interactions ================================== pair_style kim EAM_Dynamo_SongMendelev_2021_AlSm__MO_722733117926_000 pair_coeff * * Al #=== END kim interactions ==================================== mass 1 ${mass_converted} mass 1 26.981538 # initial volume variable v equal vol # assign formula variable V0 equal ${v} # evaluate initial value variable V0 equal 66161.1936860816 variable V0_metal equal ${V0}/(${_u_distance}*${_u_distance}*${_u_distance}) variable V0_metal equal 66161.1936860816/(${_u_distance}*${_u_distance}*${_u_distance}) variable V0_metal equal 66161.1936860816/(1*${_u_distance}*${_u_distance}) variable V0_metal equal 66161.1936860816/(1*1*${_u_distance}) variable V0_metal equal 66161.1936860816/(1*1*1) variable V0_metal_times1000 equal ${V0_metal}*1000 variable V0_metal_times1000 equal 66161.1936860816*1000 print "Initial system volume: ${V0_metal} Angstroms^3" Initial system volume: 66161.1936860816 Angstroms^3 # set the time step to 0.001 picoseconds variable timestep_converted equal 0.001*${_u_time} variable timestep_converted equal 0.001*1 timestep ${timestep_converted} timestep 0.001 variable temp_converted equal 333.15*${_u_temperature} variable temp_converted equal 333.15*1 variable Tdamp_converted equal 0.1*${_u_time} variable Tdamp_converted equal 0.1*1 variable press_converted equal 0.0*${_u_pressure} variable press_converted equal 0.0*1 variable Pdamp_converted equal 1*${_u_time} variable Pdamp_converted equal 1*1 # create initial velocities consistent with the chosen temperature velocity all create ${temp_converted} 17 mom yes rot yes velocity all create 333.15 17 mom yes rot yes # set NPT ensemble for all atoms fix ensemble all npt temp ${temp_converted} ${temp_converted} ${Tdamp_converted} iso ${press_converted} ${press_converted} ${Pdamp_converted} fix ensemble all npt temp 333.15 ${temp_converted} ${Tdamp_converted} iso ${press_converted} ${press_converted} ${Pdamp_converted} fix ensemble all npt temp 333.15 333.15 ${Tdamp_converted} iso ${press_converted} ${press_converted} ${Pdamp_converted} fix ensemble all npt temp 333.15 333.15 0.1 iso ${press_converted} ${press_converted} ${Pdamp_converted} fix ensemble all npt temp 333.15 333.15 0.1 iso 0 ${press_converted} ${Pdamp_converted} fix ensemble all npt temp 333.15 333.15 0.1 iso 0 0 ${Pdamp_converted} fix ensemble all npt temp 333.15 333.15 0.1 iso 0 0 1 # compute the time averages of pressure, temperature, and volume, respectively # ignore the first 5000 timesteps variable etotal_metal equal etotal/${_u_energy} variable etotal_metal equal etotal/1 variable pe_metal equal pe/${_u_energy} variable pe_metal equal pe/1 variable T_metal equal temp/${_u_temperature} variable T_metal equal temp/1 variable V_metal equal vol/(${_u_distance}*${_u_distance}*${_u_distance}) variable V_metal equal vol/(1*${_u_distance}*${_u_distance}) variable V_metal equal vol/(1*1*${_u_distance}) variable V_metal equal vol/(1*1*1) variable P_metal equal press/${_u_pressure} variable P_metal equal press/1 fix avgmyTemp all ave/time 5 20 100 v_T_metal ave running start 5000 fix avgmyPress all ave/time 5 20 100 v_P_metal ave running start 5000 fix avgmyVol all ave/time 5 20 100 v_V_metal ave running start 5000 # extract fix quantities into variables so they can be used in if-else logic later. variable T equal f_avgmyTemp variable P equal f_avgmyPress variable V equal f_avgmyVol # set error bounds for temperature and pressure in original metal units (K and bar) variable T_low equal "333.15 - 0.2" variable T_up equal "333.15 + 0.2" variable P_low equal "0.0 - 0.2" variable P_up equal "0.0 + 0.2" # print to logfile every 1000 timesteps thermo_style custom step etotal v_etotal_metal pe v_pe_metal temp v_T_metal vol v_V_metal press v_P_metal thermo 1000 # Run a simulation for at most 2000*1000 timesteps. At each 1000th time step, check # whether the temperature and pressure have converged. If yes, break. label top variable a loop 2000 run 1000 CITE-CITE-CITE-CITE-CITE-CITE-CITE-CITE-CITE-CITE-CITE-CITE-CITE Your simulation uses code contributions which should be cited: - OpenKIM: https://doi.org/10.1007/s11837-011-0102-6 @Article{tadmor:elliott:2011, author = {E. B. Tadmor and R. S. Elliott and J. P. Sethna and R. E. Miller and C. A. Becker}, title = {The potential of atomistic simulations and the {K}nowledgebase of {I}nteratomic {M}odels}, journal = {{JOM}}, year = 2011, volume = 63, number = 17, pages = {17}, doi = {10.1007/s11837-011-0102-6} } - OpenKIM potential: https://openkim.org/cite/MO_722733117926_000#item-citation CITE-CITE-CITE-CITE-CITE-CITE-CITE-CITE-CITE-CITE-CITE-CITE-CITE Neighbor list info ... update every 1 steps, delay 10 steps, check yes max neighbors/atom: 2000, page size: 100000 master list distance cutoff = 10 ghost atom cutoff = 10 binsize = 5, bins = 9 9 9 1 neighbor lists, perpetual/occasional/extra = 1 0 0 (1) pair kim, perpetual attributes: full, newton off, cut 10 pair build: full/bin/atomonly stencil: full/bin/3d bin: standard Per MPI rank memory allocation (min/avg/max) = 7.386 | 7.386 | 7.386 Mbytes Step TotEng v_etotal_metal PotEng v_pe_metal Temp v_T_metal Volume v_V_metal Press v_P_metal 0 -13075.144 -13075.144 -13247.353 -13247.353 333.15 333.15 66161.194 66161.194 2780.1705 2780.1705 1000 -12888.421 -12888.421 -13065.781 -13065.781 343.11542 343.11542 68248.147 68248.147 1394.4678 1394.4678 Loop time of 124.622 on 1 procs for 1000 steps with 4000 atoms Performance: 0.693 ns/day, 34.617 hours/ns, 8.024 timesteps/s 99.9% CPU use with 1 MPI tasks x 1 OpenMP threads MPI task timing breakdown: Section | min time | avg time | max time |%varavg| %total --------------------------------------------------------------- Pair | 123.51 | 123.51 | 123.51 | 0.0 | 99.11 Neigh | 0.11887 | 0.11887 | 0.11887 | 0.0 | 0.10 Comm | 0.20547 | 0.20547 | 0.20547 | 0.0 | 0.16 Output | 0.00027279 | 0.00027279 | 0.00027279 | 0.0 | 0.00 Modify | 0.68645 | 0.68645 | 0.68645 | 0.0 | 0.55 Other | | 0.103 | | | 0.08 Nlocal: 4000.00 ave 4000 max 4000 min Histogram: 1 0 0 0 0 0 0 0 0 0 Nghost: 8272.00 ave 8272 max 8272 min Histogram: 1 0 0 0 0 0 0 0 0 0 Neighs: 0.00000 ave 0 max 0 min Histogram: 1 0 0 0 0 0 0 0 0 0 FullNghs: 943134.0 ave 943134 max 943134 min Histogram: 1 0 0 0 0 0 0 0 0 0 Total # of neighbors = 943134 Ave neighs/atom = 235.78350 Neighbor list builds = 1 Dangerous builds = 0 if "${V_metal}>${V0_metal_times1000}" then "jump SELF unstable" if "${T}>${T_low} && ${T}<${T_up} && ${P}>${P_low} && ${P}<${P_up}" then "jump SELF break" print "flag: Temp = ${T}, Press = ${P}" flag: Temp = 0, Press = 0 next a jump SELF top variable a loop 2000 run 1000 Neighbor list info ... update every 1 steps, delay 10 steps, check yes max neighbors/atom: 2000, page size: 100000 master list distance cutoff = 10 ghost atom cutoff = 10 binsize = 5, bins = 9 9 9 1 neighbor lists, perpetual/occasional/extra = 1 0 0 (1) pair kim, perpetual attributes: full, newton off, cut 10 pair build: full/bin/atomonly stencil: full/bin/3d bin: standard Per MPI rank memory allocation (min/avg/max) = 7.005 | 7.005 | 7.005 Mbytes Step TotEng v_etotal_metal PotEng v_pe_metal Temp v_T_metal Volume v_V_metal Press v_P_metal 1000 -12888.421 -12888.421 -13065.781 -13065.781 343.11542 343.11542 68248.147 68248.147 1394.4678 1394.4678 2000 -12906.009 -12906.009 -13073.706 -13073.706 324.41942 324.41942 68254.306 68254.306 323.51458 323.51458 Loop time of 126.186 on 1 procs for 1000 steps with 4000 atoms Performance: 0.685 ns/day, 35.052 hours/ns, 7.925 timesteps/s 99.9% CPU use with 1 MPI tasks x 1 OpenMP threads MPI task timing breakdown: Section | min time | avg time | max time |%varavg| %total --------------------------------------------------------------- Pair | 125.19 | 125.19 | 125.19 | 0.0 | 99.21 Neigh | 0 | 0 | 0 | 0.0 | 0.00 Comm | 0.20258 | 0.20258 | 0.20258 | 0.0 | 0.16 Output | 0.00021863 | 0.00021863 | 0.00021863 | 0.0 | 0.00 Modify | 0.69256 | 0.69256 | 0.69256 | 0.0 | 0.55 Other | | 0.1037 | | | 0.08 Nlocal: 4000.00 ave 4000 max 4000 min Histogram: 1 0 0 0 0 0 0 0 0 0 Nghost: 8258.00 ave 8258 max 8258 min Histogram: 1 0 0 0 0 0 0 0 0 0 Neighs: 0.00000 ave 0 max 0 min Histogram: 1 0 0 0 0 0 0 0 0 0 FullNghs: 941504.0 ave 941504 max 941504 min Histogram: 1 0 0 0 0 0 0 0 0 0 Total # of neighbors = 941504 Ave neighs/atom = 235.37600 Neighbor list builds = 0 Dangerous builds = 0 if "${V_metal}>${V0_metal_times1000}" then "jump SELF unstable" if "${T}>${T_low} && ${T}<${T_up} && ${P}>${P_low} && ${P}<${P_up}" then "jump SELF break" print "flag: Temp = ${T}, Press = ${P}" flag: Temp = 0, Press = 0 next a jump SELF top variable a loop 2000 run 1000 Neighbor list info ... update every 1 steps, delay 10 steps, check yes max neighbors/atom: 2000, page size: 100000 master list distance cutoff = 10 ghost atom cutoff = 10 binsize = 5, bins = 9 9 9 1 neighbor lists, perpetual/occasional/extra = 1 0 0 (1) pair kim, perpetual attributes: full, newton off, cut 10 pair build: full/bin/atomonly stencil: full/bin/3d bin: standard Per MPI rank memory allocation (min/avg/max) = 7.005 | 7.005 | 7.005 Mbytes Step TotEng v_etotal_metal PotEng v_pe_metal Temp v_T_metal Volume v_V_metal Press v_P_metal 2000 -12906.009 -12906.009 -13073.706 -13073.706 324.41942 324.41942 68254.306 68254.306 323.51458 323.51458 3000 -12898.894 -12898.894 -13070.137 -13070.137 331.2801 331.2801 68307.552 68307.552 -142.73133 -142.73133 Loop time of 132.406 on 1 procs for 1000 steps with 4000 atoms Performance: 0.653 ns/day, 36.779 hours/ns, 7.553 timesteps/s 99.9% CPU use with 1 MPI tasks x 1 OpenMP threads MPI task timing breakdown: Section | min time | avg time | max time |%varavg| %total --------------------------------------------------------------- Pair | 131.38 | 131.38 | 131.38 | 0.0 | 99.22 Neigh | 0 | 0 | 0 | 0.0 | 0.00 Comm | 0.20647 | 0.20647 | 0.20647 | 0.0 | 0.16 Output | 0.00021688 | 0.00021688 | 0.00021688 | 0.0 | 0.00 Modify | 0.71693 | 0.71693 | 0.71693 | 0.0 | 0.54 Other | | 0.105 | | | 0.08 Nlocal: 4000.00 ave 4000 max 4000 min Histogram: 1 0 0 0 0 0 0 0 0 0 Nghost: 8238.00 ave 8238 max 8238 min Histogram: 1 0 0 0 0 0 0 0 0 0 Neighs: 0.00000 ave 0 max 0 min Histogram: 1 0 0 0 0 0 0 0 0 0 FullNghs: 941176.0 ave 941176 max 941176 min Histogram: 1 0 0 0 0 0 0 0 0 0 Total # of neighbors = 941176 Ave neighs/atom = 235.29400 Neighbor list builds = 0 Dangerous builds = 0 if "${V_metal}>${V0_metal_times1000}" then "jump SELF unstable" if "${T}>${T_low} && ${T}<${T_up} && ${P}>${P_low} && ${P}<${P_up}" then "jump SELF break" print "flag: Temp = ${T}, Press = ${P}" flag: Temp = 0, Press = 0 next a jump SELF top variable a loop 2000 run 1000 Neighbor list info ... update every 1 steps, delay 10 steps, check yes max neighbors/atom: 2000, page size: 100000 master list distance cutoff = 10 ghost atom cutoff = 10 binsize = 5, bins = 9 9 9 1 neighbor lists, perpetual/occasional/extra = 1 0 0 (1) pair kim, perpetual attributes: full, newton off, cut 10 pair build: full/bin/atomonly stencil: full/bin/3d bin: standard Per MPI rank memory allocation (min/avg/max) = 7.005 | 7.005 | 7.005 Mbytes Step TotEng v_etotal_metal PotEng v_pe_metal Temp v_T_metal Volume v_V_metal Press v_P_metal 3000 -12898.894 -12898.894 -13070.137 -13070.137 331.2801 331.2801 68307.552 68307.552 -142.73133 -142.73133 4000 -12898.563 -12898.563 -13069.594 -13069.594 330.87034 330.87034 68253.538 68253.538 725.66056 725.66056 Loop time of 128.619 on 1 procs for 1000 steps with 4000 atoms Performance: 0.672 ns/day, 35.728 hours/ns, 7.775 timesteps/s 99.9% CPU use with 1 MPI tasks x 1 OpenMP threads MPI task timing breakdown: Section | min time | avg time | max time |%varavg| %total --------------------------------------------------------------- Pair | 127.61 | 127.61 | 127.61 | 0.0 | 99.21 Neigh | 0 | 0 | 0 | 0.0 | 0.00 Comm | 0.20381 | 0.20381 | 0.20381 | 0.0 | 0.16 Output | 0.00026151 | 0.00026151 | 0.00026151 | 0.0 | 0.00 Modify | 0.70229 | 0.70229 | 0.70229 | 0.0 | 0.55 Other | | 0.1045 | | | 0.08 Nlocal: 4000.00 ave 4000 max 4000 min Histogram: 1 0 0 0 0 0 0 0 0 0 Nghost: 8235.00 ave 8235 max 8235 min Histogram: 1 0 0 0 0 0 0 0 0 0 Neighs: 0.00000 ave 0 max 0 min Histogram: 1 0 0 0 0 0 0 0 0 0 FullNghs: 940796.0 ave 940796 max 940796 min Histogram: 1 0 0 0 0 0 0 0 0 0 Total # of neighbors = 940796 Ave neighs/atom = 235.19900 Neighbor list builds = 0 Dangerous builds = 0 if "${V_metal}>${V0_metal_times1000}" then "jump SELF unstable" if "${T}>${T_low} && ${T}<${T_up} && ${P}>${P_low} && ${P}<${P_up}" then "jump SELF break" print "flag: Temp = ${T}, Press = ${P}" flag: Temp = 0, Press = 0 next a jump SELF top variable a loop 2000 run 1000 Neighbor list info ... update every 1 steps, delay 10 steps, check yes max neighbors/atom: 2000, page size: 100000 master list distance cutoff = 10 ghost atom cutoff = 10 binsize = 5, bins = 9 9 9 1 neighbor lists, perpetual/occasional/extra = 1 0 0 (1) pair kim, perpetual attributes: full, newton off, cut 10 pair build: full/bin/atomonly stencil: full/bin/3d bin: standard Per MPI rank memory allocation (min/avg/max) = 7.005 | 7.005 | 7.005 Mbytes Step TotEng v_etotal_metal PotEng v_pe_metal Temp v_T_metal Volume v_V_metal Press v_P_metal 4000 -12898.563 -12898.563 -13069.594 -13069.594 330.87034 330.87034 68253.538 68253.538 725.66056 725.66056 5000 -12902.606 -12902.606 -13071.052 -13071.052 325.87025 325.87025 68277.857 68277.857 138.62467 138.62467 Loop time of 130.748 on 1 procs for 1000 steps with 4000 atoms Performance: 0.661 ns/day, 36.319 hours/ns, 7.648 timesteps/s 99.9% CPU use with 1 MPI tasks x 1 OpenMP threads MPI task timing breakdown: Section | min time | avg time | max time |%varavg| %total --------------------------------------------------------------- Pair | 129.72 | 129.72 | 129.72 | 0.0 | 99.22 Neigh | 0 | 0 | 0 | 0.0 | 0.00 Comm | 0.2064 | 0.2064 | 0.2064 | 0.0 | 0.16 Output | 0.00018173 | 0.00018173 | 0.00018173 | 0.0 | 0.00 Modify | 0.71334 | 0.71334 | 0.71334 | 0.0 | 0.55 Other | | 0.1049 | | | 0.08 Nlocal: 4000.00 ave 4000 max 4000 min Histogram: 1 0 0 0 0 0 0 0 0 0 Nghost: 8260.00 ave 8260 max 8260 min Histogram: 1 0 0 0 0 0 0 0 0 0 Neighs: 0.00000 ave 0 max 0 min Histogram: 1 0 0 0 0 0 0 0 0 0 FullNghs: 941290.0 ave 941290 max 941290 min Histogram: 1 0 0 0 0 0 0 0 0 0 Total # of neighbors = 941290 Ave neighs/atom = 235.32250 Neighbor list builds = 0 Dangerous builds = 0 if "${V_metal}>${V0_metal_times1000}" then "jump SELF unstable" if "${T}>${T_low} && ${T}<${T_up} && ${P}>${P_low} && ${P}<${P_up}" then "jump SELF break" print "flag: Temp = ${T}, Press = ${P}" flag: Temp = 333.993471032757, Press = 202.001104126736 next a jump SELF top variable a loop 2000 run 1000 Neighbor list info ... update every 1 steps, delay 10 steps, check yes max neighbors/atom: 2000, page size: 100000 master list distance cutoff = 10 ghost atom cutoff = 10 binsize = 5, bins = 9 9 9 1 neighbor lists, perpetual/occasional/extra = 1 0 0 (1) pair kim, perpetual attributes: full, newton off, cut 10 pair build: full/bin/atomonly stencil: full/bin/3d bin: standard Per MPI rank memory allocation (min/avg/max) = 7.005 | 7.005 | 7.005 Mbytes Step TotEng v_etotal_metal PotEng v_pe_metal Temp v_T_metal Volume v_V_metal Press v_P_metal 5000 -12902.606 -12902.606 -13071.052 -13071.052 325.87025 325.87025 68277.857 68277.857 138.62467 138.62467 6000 -12897.425 -12897.425 -13069.048 -13069.048 332.01646 332.01646 68324.617 68324.617 -293.48441 -293.48441 Loop time of 127.114 on 1 procs for 1000 steps with 4000 atoms Performance: 0.680 ns/day, 35.309 hours/ns, 7.867 timesteps/s 99.9% CPU use with 1 MPI tasks x 1 OpenMP threads MPI task timing breakdown: Section | min time | avg time | max time |%varavg| %total --------------------------------------------------------------- Pair | 126.09 | 126.09 | 126.09 | 0.0 | 99.19 Neigh | 0 | 0 | 0 | 0.0 | 0.00 Comm | 0.20149 | 0.20149 | 0.20149 | 0.0 | 0.16 Output | 0.00023585 | 0.00023585 | 0.00023585 | 0.0 | 0.00 Modify | 0.71763 | 0.71763 | 0.71763 | 0.0 | 0.56 Other | | 0.1042 | | | 0.08 Nlocal: 4000.00 ave 4000 max 4000 min Histogram: 1 0 0 0 0 0 0 0 0 0 Nghost: 8228.00 ave 8228 max 8228 min Histogram: 1 0 0 0 0 0 0 0 0 0 Neighs: 0.00000 ave 0 max 0 min Histogram: 1 0 0 0 0 0 0 0 0 0 FullNghs: 940976.0 ave 940976 max 940976 min Histogram: 1 0 0 0 0 0 0 0 0 0 Total # of neighbors = 940976 Ave neighs/atom = 235.24400 Neighbor list builds = 0 Dangerous builds = 0 if "${V_metal}>${V0_metal_times1000}" then "jump SELF unstable" if "${T}>${T_low} && ${T}<${T_up} && ${P}>${P_low} && ${P}<${P_up}" then "jump SELF break" print "flag: Temp = ${T}, Press = ${P}" flag: Temp = 332.788183126243, Press = 21.3354842376769 next a jump SELF top variable a loop 2000 run 1000 Neighbor list info ... update every 1 steps, delay 10 steps, check yes max neighbors/atom: 2000, page size: 100000 master list distance cutoff = 10 ghost atom cutoff = 10 binsize = 5, bins = 9 9 9 1 neighbor lists, perpetual/occasional/extra = 1 0 0 (1) pair kim, perpetual attributes: full, newton off, cut 10 pair build: full/bin/atomonly stencil: full/bin/3d bin: standard Per MPI rank memory allocation (min/avg/max) = 7.005 | 7.005 | 7.005 Mbytes Step TotEng v_etotal_metal PotEng v_pe_metal Temp v_T_metal Volume v_V_metal Press v_P_metal 6000 -12897.425 -12897.425 -13069.048 -13069.048 332.01646 332.01646 68324.617 68324.617 -293.48441 -293.48441 7000 -12903.962 -12903.962 -13073.824 -13073.824 328.60944 328.60944 68256.239 68256.239 138.54954 138.54954 Loop time of 126.065 on 1 procs for 1000 steps with 4000 atoms Performance: 0.685 ns/day, 35.018 hours/ns, 7.932 timesteps/s 99.9% CPU use with 1 MPI tasks x 1 OpenMP threads MPI task timing breakdown: Section | min time | avg time | max time |%varavg| %total --------------------------------------------------------------- Pair | 125.04 | 125.04 | 125.04 | 0.0 | 99.19 Neigh | 0 | 0 | 0 | 0.0 | 0.00 Comm | 0.20184 | 0.20184 | 0.20184 | 0.0 | 0.16 Output | 0.00021872 | 0.00021872 | 0.00021872 | 0.0 | 0.00 Modify | 0.71535 | 0.71535 | 0.71535 | 0.0 | 0.57 Other | | 0.1041 | | | 0.08 Nlocal: 4000.00 ave 4000 max 4000 min Histogram: 1 0 0 0 0 0 0 0 0 0 Nghost: 8269.00 ave 8269 max 8269 min Histogram: 1 0 0 0 0 0 0 0 0 0 Neighs: 0.00000 ave 0 max 0 min Histogram: 1 0 0 0 0 0 0 0 0 0 FullNghs: 940582.0 ave 940582 max 940582 min Histogram: 1 0 0 0 0 0 0 0 0 0 Total # of neighbors = 940582 Ave neighs/atom = 235.14550 Neighbor list builds = 0 Dangerous builds = 0 if "${V_metal}>${V0_metal_times1000}" then "jump SELF unstable" if "${T}>${T_low} && ${T}<${T_up} && ${P}>${P_low} && ${P}<${P_up}" then "jump SELF break" print "flag: Temp = ${T}, Press = ${P}" flag: Temp = 333.122297475352, Press = -11.6330258362057 next a jump SELF top variable a loop 2000 run 1000 Neighbor list info ... update every 1 steps, delay 10 steps, check yes max neighbors/atom: 2000, page size: 100000 master list distance cutoff = 10 ghost atom cutoff = 10 binsize = 5, bins = 9 9 9 1 neighbor lists, perpetual/occasional/extra = 1 0 0 (1) pair kim, perpetual attributes: full, newton off, cut 10 pair build: full/bin/atomonly stencil: full/bin/3d bin: standard Per MPI rank memory allocation (min/avg/max) = 7.005 | 7.005 | 7.005 Mbytes Step TotEng v_etotal_metal PotEng v_pe_metal Temp v_T_metal Volume v_V_metal Press v_P_metal 7000 -12903.962 -12903.962 -13073.824 -13073.824 328.60944 328.60944 68256.239 68256.239 138.54954 138.54954 8000 -12896.392 -12896.392 -13069.953 -13069.953 335.76423 335.76423 68199.512 68199.512 1443.9233 1443.9233 Loop time of 128.195 on 1 procs for 1000 steps with 4000 atoms Performance: 0.674 ns/day, 35.610 hours/ns, 7.801 timesteps/s 99.9% CPU use with 1 MPI tasks x 1 OpenMP threads MPI task timing breakdown: Section | min time | avg time | max time |%varavg| %total --------------------------------------------------------------- Pair | 127.16 | 127.16 | 127.16 | 0.0 | 99.20 Neigh | 0 | 0 | 0 | 0.0 | 0.00 Comm | 0.20432 | 0.20432 | 0.20432 | 0.0 | 0.16 Output | 0.00023613 | 0.00023613 | 0.00023613 | 0.0 | 0.00 Modify | 0.72286 | 0.72286 | 0.72286 | 0.0 | 0.56 Other | | 0.1035 | | | 0.08 Nlocal: 4000.00 ave 4000 max 4000 min Histogram: 1 0 0 0 0 0 0 0 0 0 Nghost: 8250.00 ave 8250 max 8250 min Histogram: 1 0 0 0 0 0 0 0 0 0 Neighs: 0.00000 ave 0 max 0 min Histogram: 1 0 0 0 0 0 0 0 0 0 FullNghs: 941528.0 ave 941528 max 941528 min Histogram: 1 0 0 0 0 0 0 0 0 0 Total # of neighbors = 941528 Ave neighs/atom = 235.38200 Neighbor list builds = 0 Dangerous builds = 0 if "${V_metal}>${V0_metal_times1000}" then "jump SELF unstable" if "${T}>${T_low} && ${T}<${T_up} && ${P}>${P_low} && ${P}<${P_up}" then "jump SELF break" print "flag: Temp = ${T}, Press = ${P}" flag: Temp = 333.208677075779, Press = 10.3667946224557 next a jump SELF top variable a loop 2000 run 1000 Neighbor list info ... update every 1 steps, delay 10 steps, check yes max neighbors/atom: 2000, page size: 100000 master list distance cutoff = 10 ghost atom cutoff = 10 binsize = 5, bins = 9 9 9 1 neighbor lists, perpetual/occasional/extra = 1 0 0 (1) pair kim, perpetual attributes: full, newton off, cut 10 pair build: full/bin/atomonly stencil: full/bin/3d bin: standard Per MPI rank memory allocation (min/avg/max) = 7.005 | 7.005 | 7.005 Mbytes Step TotEng v_etotal_metal PotEng v_pe_metal Temp v_T_metal Volume v_V_metal Press v_P_metal 8000 -12896.392 -12896.392 -13069.953 -13069.953 335.76423 335.76423 68199.512 68199.512 1443.9233 1443.9233 9000 -12899.313 -12899.313 -13071.65 -13071.65 333.39887 333.39887 68434.549 68434.549 -2303.6511 -2303.6511 Loop time of 131.052 on 1 procs for 1000 steps with 4000 atoms Performance: 0.659 ns/day, 36.403 hours/ns, 7.631 timesteps/s 99.9% CPU use with 1 MPI tasks x 1 OpenMP threads MPI task timing breakdown: Section | min time | avg time | max time |%varavg| %total --------------------------------------------------------------- Pair | 130.01 | 130.01 | 130.01 | 0.0 | 99.20 Neigh | 0 | 0 | 0 | 0.0 | 0.00 Comm | 0.2068 | 0.2068 | 0.2068 | 0.0 | 0.16 Output | 0.00021948 | 0.00021948 | 0.00021948 | 0.0 | 0.00 Modify | 0.73297 | 0.73297 | 0.73297 | 0.0 | 0.56 Other | | 0.1038 | | | 0.08 Nlocal: 4000.00 ave 4000 max 4000 min Histogram: 1 0 0 0 0 0 0 0 0 0 Nghost: 8249.00 ave 8249 max 8249 min Histogram: 1 0 0 0 0 0 0 0 0 0 Neighs: 0.00000 ave 0 max 0 min Histogram: 1 0 0 0 0 0 0 0 0 0 FullNghs: 941958.0 ave 941958 max 941958 min Histogram: 1 0 0 0 0 0 0 0 0 0 Total # of neighbors = 941958 Ave neighs/atom = 235.48950 Neighbor list builds = 0 Dangerous builds = 0 if "${V_metal}>${V0_metal_times1000}" then "jump SELF unstable" if "${T}>${T_low} && ${T}<${T_up} && ${P}>${P_low} && ${P}<${P_up}" then "jump SELF break" print "flag: Temp = ${T}, Press = ${P}" flag: Temp = 333.149004072089, Press = 3.48190718001245 next a jump SELF top variable a loop 2000 run 1000 Neighbor list info ... update every 1 steps, delay 10 steps, check yes max neighbors/atom: 2000, page size: 100000 master list distance cutoff = 10 ghost atom cutoff = 10 binsize = 5, bins = 9 9 9 1 neighbor lists, perpetual/occasional/extra = 1 0 0 (1) pair kim, perpetual attributes: full, newton off, cut 10 pair build: full/bin/atomonly stencil: full/bin/3d bin: standard Per MPI rank memory allocation (min/avg/max) = 7.005 | 7.005 | 7.005 Mbytes Step TotEng v_etotal_metal PotEng v_pe_metal Temp v_T_metal Volume v_V_metal Press v_P_metal 9000 -12899.313 -12899.313 -13071.65 -13071.65 333.39887 333.39887 68434.549 68434.549 -2303.6511 -2303.6511 10000 -12903.796 -12903.796 -13073.714 -13073.714 328.71912 328.71912 68237.026 68237.026 444.69778 444.69778 Loop time of 126.8 on 1 procs for 1000 steps with 4000 atoms Performance: 0.681 ns/day, 35.222 hours/ns, 7.886 timesteps/s 99.9% CPU use with 1 MPI tasks x 1 OpenMP threads MPI task timing breakdown: Section | min time | avg time | max time |%varavg| %total --------------------------------------------------------------- Pair | 125.77 | 125.77 | 125.77 | 0.0 | 99.19 Neigh | 0 | 0 | 0 | 0.0 | 0.00 Comm | 0.20253 | 0.20253 | 0.20253 | 0.0 | 0.16 Output | 0.00028922 | 0.00028922 | 0.00028922 | 0.0 | 0.00 Modify | 0.71697 | 0.71697 | 0.71697 | 0.0 | 0.57 Other | | 0.1051 | | | 0.08 Nlocal: 4000.00 ave 4000 max 4000 min Histogram: 1 0 0 0 0 0 0 0 0 0 Nghost: 8236.00 ave 8236 max 8236 min Histogram: 1 0 0 0 0 0 0 0 0 0 Neighs: 0.00000 ave 0 max 0 min Histogram: 1 0 0 0 0 0 0 0 0 0 FullNghs: 938668.0 ave 938668 max 938668 min Histogram: 1 0 0 0 0 0 0 0 0 0 Total # of neighbors = 938668 Ave neighs/atom = 234.66700 Neighbor list builds = 0 Dangerous builds = 0 if "${V_metal}>${V0_metal_times1000}" then "jump SELF unstable" if "${T}>${T_low} && ${T}<${T_up} && ${P}>${P_low} && ${P}<${P_up}" then "jump SELF break" print "flag: Temp = ${T}, Press = ${P}" flag: Temp = 333.195360638176, Press = -1.72321334941465 next a jump SELF top variable a loop 2000 run 1000 Neighbor list info ... update every 1 steps, delay 10 steps, check yes max neighbors/atom: 2000, page size: 100000 master list distance cutoff = 10 ghost atom cutoff = 10 binsize = 5, bins = 9 9 9 1 neighbor lists, perpetual/occasional/extra = 1 0 0 (1) pair kim, perpetual attributes: full, newton off, cut 10 pair build: full/bin/atomonly stencil: full/bin/3d bin: standard Per MPI rank memory allocation (min/avg/max) = 7.005 | 7.005 | 7.005 Mbytes Step TotEng v_etotal_metal PotEng v_pe_metal Temp v_T_metal Volume v_V_metal Press v_P_metal 10000 -12903.796 -12903.796 -13073.714 -13073.714 328.71912 328.71912 68237.026 68237.026 444.69778 444.69778 11000 -12898.91 -12898.91 -13071.531 -13071.531 333.94682 333.94682 68321.666 68321.666 -455.90986 -455.90986 Loop time of 127.664 on 1 procs for 1000 steps with 4000 atoms Performance: 0.677 ns/day, 35.462 hours/ns, 7.833 timesteps/s 99.9% CPU use with 1 MPI tasks x 1 OpenMP threads MPI task timing breakdown: Section | min time | avg time | max time |%varavg| %total --------------------------------------------------------------- Pair | 126.64 | 126.64 | 126.64 | 0.0 | 99.20 Neigh | 0 | 0 | 0 | 0.0 | 0.00 Comm | 0.20289 | 0.20289 | 0.20289 | 0.0 | 0.16 Output | 0.00017824 | 0.00017824 | 0.00017824 | 0.0 | 0.00 Modify | 0.71878 | 0.71878 | 0.71878 | 0.0 | 0.56 Other | | 0.1035 | | | 0.08 Nlocal: 4000.00 ave 4000 max 4000 min Histogram: 1 0 0 0 0 0 0 0 0 0 Nghost: 8276.00 ave 8276 max 8276 min Histogram: 1 0 0 0 0 0 0 0 0 0 Neighs: 0.00000 ave 0 max 0 min Histogram: 1 0 0 0 0 0 0 0 0 0 FullNghs: 941910.0 ave 941910 max 941910 min Histogram: 1 0 0 0 0 0 0 0 0 0 Total # of neighbors = 941910 Ave neighs/atom = 235.47750 Neighbor list builds = 0 Dangerous builds = 0 if "${V_metal}>${V0_metal_times1000}" then "jump SELF unstable" if "${T}>${T_low} && ${T}<${T_up} && ${P}>${P_low} && ${P}<${P_up}" then "jump SELF break" print "flag: Temp = ${T}, Press = ${P}" flag: Temp = 332.921012584586, Press = 3.21820385521917 next a jump SELF top variable a loop 2000 run 1000 Neighbor list info ... update every 1 steps, delay 10 steps, check yes max neighbors/atom: 2000, page size: 100000 master list distance cutoff = 10 ghost atom cutoff = 10 binsize = 5, bins = 9 9 9 1 neighbor lists, perpetual/occasional/extra = 1 0 0 (1) pair kim, perpetual attributes: full, newton off, cut 10 pair build: full/bin/atomonly stencil: full/bin/3d bin: standard Per MPI rank memory allocation (min/avg/max) = 7.005 | 7.005 | 7.005 Mbytes Step TotEng v_etotal_metal PotEng v_pe_metal Temp v_T_metal Volume v_V_metal Press v_P_metal 11000 -12898.91 -12898.91 -13071.531 -13071.531 333.94682 333.94682 68321.666 68321.666 -455.90986 -455.90986 12000 -12903.625 -12903.625 -13073.334 -13073.334 328.31388 328.31388 68259.423 68259.423 371.14775 371.14775 Loop time of 123.745 on 1 procs for 1000 steps with 4000 atoms Performance: 0.698 ns/day, 34.374 hours/ns, 8.081 timesteps/s 99.9% CPU use with 1 MPI tasks x 1 OpenMP threads MPI task timing breakdown: Section | min time | avg time | max time |%varavg| %total --------------------------------------------------------------- Pair | 122.73 | 122.73 | 122.73 | 0.0 | 99.18 Neigh | 0 | 0 | 0 | 0.0 | 0.00 Comm | 0.20105 | 0.20105 | 0.20105 | 0.0 | 0.16 Output | 0.000225 | 0.000225 | 0.000225 | 0.0 | 0.00 Modify | 0.71048 | 0.71048 | 0.71048 | 0.0 | 0.57 Other | | 0.1034 | | | 0.08 Nlocal: 4000.00 ave 4000 max 4000 min Histogram: 1 0 0 0 0 0 0 0 0 0 Nghost: 8243.00 ave 8243 max 8243 min Histogram: 1 0 0 0 0 0 0 0 0 0 Neighs: 0.00000 ave 0 max 0 min Histogram: 1 0 0 0 0 0 0 0 0 0 FullNghs: 940616.0 ave 940616 max 940616 min Histogram: 1 0 0 0 0 0 0 0 0 0 Total # of neighbors = 940616 Ave neighs/atom = 235.15400 Neighbor list builds = 0 Dangerous builds = 0 if "${V_metal}>${V0_metal_times1000}" then "jump SELF unstable" if "${T}>${T_low} && ${T}<${T_up} && ${P}>${P_low} && ${P}<${P_up}" then "jump SELF break" print "flag: Temp = ${T}, Press = ${P}" flag: Temp = 332.78402794709, Press = -1.62633485038845 next a jump SELF top variable a loop 2000 run 1000 Neighbor list info ... update every 1 steps, delay 10 steps, check yes max neighbors/atom: 2000, page size: 100000 master list distance cutoff = 10 ghost atom cutoff = 10 binsize = 5, bins = 9 9 9 1 neighbor lists, perpetual/occasional/extra = 1 0 0 (1) pair kim, perpetual attributes: full, newton off, cut 10 pair build: full/bin/atomonly stencil: full/bin/3d bin: standard Per MPI rank memory allocation (min/avg/max) = 7.005 | 7.005 | 7.005 Mbytes Step TotEng v_etotal_metal PotEng v_pe_metal Temp v_T_metal Volume v_V_metal Press v_P_metal 12000 -12903.625 -12903.625 -13073.334 -13073.334 328.31388 328.31388 68259.423 68259.423 371.14775 371.14775 13000 -12901.727 -12901.727 -13074.346 -13074.346 333.94232 333.94232 68284.863 68284.863 -369.31644 -369.31644 Loop time of 123.426 on 1 procs for 1000 steps with 4000 atoms Performance: 0.700 ns/day, 34.285 hours/ns, 8.102 timesteps/s 99.9% CPU use with 1 MPI tasks x 1 OpenMP threads MPI task timing breakdown: Section | min time | avg time | max time |%varavg| %total --------------------------------------------------------------- Pair | 122.42 | 122.42 | 122.42 | 0.0 | 99.18 Neigh | 0 | 0 | 0 | 0.0 | 0.00 Comm | 0.19917 | 0.19917 | 0.19917 | 0.0 | 0.16 Output | 0.00017244 | 0.00017244 | 0.00017244 | 0.0 | 0.00 Modify | 0.70595 | 0.70595 | 0.70595 | 0.0 | 0.57 Other | | 0.1029 | | | 0.08 Nlocal: 4000.00 ave 4000 max 4000 min Histogram: 1 0 0 0 0 0 0 0 0 0 Nghost: 8245.00 ave 8245 max 8245 min Histogram: 1 0 0 0 0 0 0 0 0 0 Neighs: 0.00000 ave 0 max 0 min Histogram: 1 0 0 0 0 0 0 0 0 0 FullNghs: 941290.0 ave 941290 max 941290 min Histogram: 1 0 0 0 0 0 0 0 0 0 Total # of neighbors = 941290 Ave neighs/atom = 235.32250 Neighbor list builds = 0 Dangerous builds = 0 if "${V_metal}>${V0_metal_times1000}" then "jump SELF unstable" if "${T}>${T_low} && ${T}<${T_up} && ${P}>${P_low} && ${P}<${P_up}" then "jump SELF break" print "flag: Temp = ${T}, Press = ${P}" flag: Temp = 332.973889393512, Press = 0.48902689242517 next a jump SELF top variable a loop 2000 run 1000 Neighbor list info ... update every 1 steps, delay 10 steps, check yes max neighbors/atom: 2000, page size: 100000 master list distance cutoff = 10 ghost atom cutoff = 10 binsize = 5, bins = 9 9 9 1 neighbor lists, perpetual/occasional/extra = 1 0 0 (1) pair kim, perpetual attributes: full, newton off, cut 10 pair build: full/bin/atomonly stencil: full/bin/3d bin: standard Per MPI rank memory allocation (min/avg/max) = 7.005 | 7.005 | 7.005 Mbytes Step TotEng v_etotal_metal PotEng v_pe_metal Temp v_T_metal Volume v_V_metal Press v_P_metal 13000 -12901.727 -12901.727 -13074.346 -13074.346 333.94232 333.94232 68284.863 68284.863 -369.31644 -369.31644 14000 -12894.932 -12894.932 -13067.406 -13067.406 333.66159 333.66159 68321.03 68321.03 -70.75154 -70.75154 Loop time of 124.441 on 1 procs for 1000 steps with 4000 atoms Performance: 0.694 ns/day, 34.567 hours/ns, 8.036 timesteps/s 99.9% CPU use with 1 MPI tasks x 1 OpenMP threads MPI task timing breakdown: Section | min time | avg time | max time |%varavg| %total --------------------------------------------------------------- Pair | 123.43 | 123.43 | 123.43 | 0.0 | 99.19 Neigh | 0 | 0 | 0 | 0.0 | 0.00 Comm | 0.19969 | 0.19969 | 0.19969 | 0.0 | 0.16 Output | 0.0001774 | 0.0001774 | 0.0001774 | 0.0 | 0.00 Modify | 0.7079 | 0.7079 | 0.7079 | 0.0 | 0.57 Other | | 0.1032 | | | 0.08 Nlocal: 4000.00 ave 4000 max 4000 min Histogram: 1 0 0 0 0 0 0 0 0 0 Nghost: 8267.00 ave 8267 max 8267 min Histogram: 1 0 0 0 0 0 0 0 0 0 Neighs: 0.00000 ave 0 max 0 min Histogram: 1 0 0 0 0 0 0 0 0 0 FullNghs: 940916.0 ave 940916 max 940916 min Histogram: 1 0 0 0 0 0 0 0 0 0 Total # of neighbors = 940916 Ave neighs/atom = 235.22900 Neighbor list builds = 0 Dangerous builds = 0 if "${V_metal}>${V0_metal_times1000}" then "jump SELF unstable" if "${T}>${T_low} && ${T}<${T_up} && ${P}>${P_low} && ${P}<${P_up}" then "jump SELF break" print "flag: Temp = ${T}, Press = ${P}" flag: Temp = 333.180445295372, Press = 0.319031343922984 next a jump SELF top variable a loop 2000 run 1000 Neighbor list info ... update every 1 steps, delay 10 steps, check yes max neighbors/atom: 2000, page size: 100000 master list distance cutoff = 10 ghost atom cutoff = 10 binsize = 5, bins = 9 9 9 1 neighbor lists, perpetual/occasional/extra = 1 0 0 (1) pair kim, perpetual attributes: full, newton off, cut 10 pair build: full/bin/atomonly stencil: full/bin/3d bin: standard Per MPI rank memory allocation (min/avg/max) = 7.005 | 7.005 | 7.005 Mbytes Step TotEng v_etotal_metal PotEng v_pe_metal Temp v_T_metal Volume v_V_metal Press v_P_metal 14000 -12894.932 -12894.932 -13067.406 -13067.406 333.66159 333.66159 68321.03 68321.03 -70.75154 -70.75154 15000 -12902.855 -12902.855 -13074.881 -13074.881 332.79553 332.79553 68218.126 68218.126 647.34369 647.34369 Loop time of 127.844 on 1 procs for 1000 steps with 4000 atoms Performance: 0.676 ns/day, 35.512 hours/ns, 7.822 timesteps/s 99.9% CPU use with 1 MPI tasks x 1 OpenMP threads MPI task timing breakdown: Section | min time | avg time | max time |%varavg| %total --------------------------------------------------------------- Pair | 126.82 | 126.82 | 126.82 | 0.0 | 99.20 Neigh | 0 | 0 | 0 | 0.0 | 0.00 Comm | 0.20413 | 0.20413 | 0.20413 | 0.0 | 0.16 Output | 0.00018151 | 0.00018151 | 0.00018151 | 0.0 | 0.00 Modify | 0.71506 | 0.71506 | 0.71506 | 0.0 | 0.56 Other | | 0.1045 | | | 0.08 Nlocal: 4000.00 ave 4000 max 4000 min Histogram: 1 0 0 0 0 0 0 0 0 0 Nghost: 8281.00 ave 8281 max 8281 min Histogram: 1 0 0 0 0 0 0 0 0 0 Neighs: 0.00000 ave 0 max 0 min Histogram: 1 0 0 0 0 0 0 0 0 0 FullNghs: 940474.0 ave 940474 max 940474 min Histogram: 1 0 0 0 0 0 0 0 0 0 Total # of neighbors = 940474 Ave neighs/atom = 235.11850 Neighbor list builds = 0 Dangerous builds = 0 if "${V_metal}>${V0_metal_times1000}" then "jump SELF unstable" if "${T}>${T_low} && ${T}<${T_up} && ${P}>${P_low} && ${P}<${P_up}" then "jump SELF break" jump SELF break # Write final averaged volume to file if temperature and volume have converged; otherwise wirte a # flag to indicate non-convergence. variable myStep equal step if "${myStep} < 2000000" then "print '${V}' file output/vol_T333.15.out" else "print 'not_converged' file output/vol_T333.15.out" print '${V}' file output/vol_T333.15.out 68279.5923153344 print "LAMMPS calculation completed" LAMMPS calculation completed quit 0