LAMMPS (24 Jan 2020) OMP_NUM_THREADS environment is not set. Defaulting to 1 thread. (src/comm.cpp:94) using 1 OpenMP thread(s) per MPI task OMP_NUM_THREADS environment is not set. Defaulting to 1 thread. (src/comm.cpp:94) using 1 OpenMP thread(s) per MPI task Lattice spacing in x,y,z = 3.52264 3.52264 3.52264 Created orthogonal box = (0 -63.4111 0) to (44.8359 63.4111 4.98177) 1 by 1 by 1 MPI processor grid Lattice spacing in x,y,z = 6.08883 5.87107 4.98177 Created 1300 atoms create_atoms CPU = 0.001894 secs 1300 atoms in group upper Displacing atoms ... Lattice spacing in x,y,z = 6.08883 5.87107 4.98177 Created 1300 atoms create_atoms CPU = 0.00170803 secs 1300 atoms in group lower Displacing atoms ... System init for delete_atoms ... Neighbor list info ... update every 1 steps, delay 10 steps, check yes max neighbors/atom: 2000, page size: 100000 master list distance cutoff = 11.7548 ghost atom cutoff = 11.7548 binsize = 5.87738, bins = 8 22 1 2 neighbor lists, perpetual/occasional/extra = 1 1 0 (1) command delete_atoms, occasional attributes: full, newton on pair build: full/bin/atomonly stencil: full/bin/3d bin: standard (2) pair kim, perpetual attributes: full, newton off, cut 11.7548 pair build: full/bin/atomonly stencil: full/bin/3d bin: standard Deleted 16 atoms, new total = 2584 WARNING: Using 'neigh_modify every 1 delay 0 check yes' setting during minimization (src/min.cpp:178) Neighbor list info ... update every 1 steps, delay 0 steps, check yes max neighbors/atom: 2000, page size: 100000 master list distance cutoff = 11.7548 ghost atom cutoff = 11.7548 binsize = 5.87738, bins = 8 22 1 1 neighbor lists, perpetual/occasional/extra = 1 0 0 (1) pair kim, perpetual attributes: full, newton off, cut 11.7548 pair build: full/bin/atomonly stencil: full/bin/3d bin: standard Setting up cg style minimization ... Unit style : metal Current step : 0 Per MPI rank memory allocation (min/avg/max) = 15.22 | 15.22 | 15.22 Mbytes Step Temp E_pair E_mol TotEng Press 0 0 -10785.28 0 -10785.28 14034.609 87 0 -10920.944 0 -10920.944 -1623.6221 Loop time of 9.68411 on 1 procs for 87 steps with 2584 atoms 100.0% CPU use with 1 MPI tasks x 1 OpenMP threads Minimization stats: Stopping criterion = energy tolerance Energy initial, next-to-last, final = -10785.279589 -10920.934151 -10920.9435173 Force two-norm initial, final = 111.987 0.436421 Force max component initial, final = 21.5574 0.0398352 Final line search alpha, max atom move = 1 0.0398352 Iterations, force evaluations = 87 161 MPI task timing breakdown: Section | min time | avg time | max time |%varavg| %total --------------------------------------------------------------- Pair | 9.5805 | 9.5805 | 9.5805 | 0.0 | 98.93 Neigh | 0.054073 | 0.054073 | 0.054073 | 0.0 | 0.56 Comm | 0.034492 | 0.034492 | 0.034492 | 0.0 | 0.36 Output | 0 | 0 | 0 | 0.0 | 0.00 Modify | 0 | 0 | 0 | 0.0 | 0.00 Other | | 0.01504 | | | 0.16 Nlocal: 2584 ave 2584 max 2584 min Histogram: 1 0 0 0 0 0 0 0 0 0 Nghost: 24218 ave 24218 max 24218 min Histogram: 1 0 0 0 0 0 0 0 0 0 Neighs: 0 ave 0 max 0 min Histogram: 1 0 0 0 0 0 0 0 0 0 FullNghs: 1.60981e+06 ave 1.60981e+06 max 1.60981e+06 min Histogram: 1 0 0 0 0 0 0 0 0 0 Total # of neighbors = 1609808 Ave neighs/atom = 622.991 Neighbor list builds = 1 Dangerous builds = 0 WARNING: Using 'neigh_modify every 1 delay 0 check yes' setting during minimization (src/min.cpp:178) Setting up cg style minimization ... Unit style : metal Current step : 87 WARNING: Energy due to 3 extra global DOFs will be included in minimizer energies Per MPI rank memory allocation (min/avg/max) = 15.23 | 15.23 | 15.23 Mbytes Step Temp E_pair E_mol TotEng Press Volume 87 0 -10920.944 0 -10920.944 -1623.6221 28327.278 90 0 -10921.157 0 -10921.157 -3564.2613 28356.727 Loop time of 0.316995 on 1 procs for 3 steps with 2584 atoms 100.0% CPU use with 1 MPI tasks x 1 OpenMP threads Minimization stats: Stopping criterion = energy tolerance Energy initial, next-to-last, final = -10920.9435173 -10921.1464217 -10921.156668 Force two-norm initial, final = 157.409 0.475094 Force max component initial, final = 148.934 0.0908083 Final line search alpha, max atom move = 3.96979e-05 3.6049e-06 Iterations, force evaluations = 3 4 MPI task timing breakdown: Section | min time | avg time | max time |%varavg| %total --------------------------------------------------------------- Pair | 0.31326 | 0.31326 | 0.31326 | 0.0 | 98.82 Neigh | 0 | 0 | 0 | 0.0 | 0.00 Comm | 0.00097919 | 0.00097919 | 0.00097919 | 0.0 | 0.31 Output | 0 | 0 | 0 | 0.0 | 0.00 Modify | 0 | 0 | 0 | 0.0 | 0.00 Other | | 0.002759 | | | 0.87 Nlocal: 2584 ave 2584 max 2584 min Histogram: 1 0 0 0 0 0 0 0 0 0 Nghost: 24297 ave 24297 max 24297 min Histogram: 1 0 0 0 0 0 0 0 0 0 Neighs: 0 ave 0 max 0 min Histogram: 1 0 0 0 0 0 0 0 0 0 FullNghs: 1.61051e+06 ave 1.61051e+06 max 1.61051e+06 min Histogram: 1 0 0 0 0 0 0 0 0 0 Total # of neighbors = 1610512 Ave neighs/atom = 623.263 Neighbor list builds = 0 Dangerous builds = 0 Neighbor list info ... update every 1 steps, delay 10 steps, check yes max neighbors/atom: 2000, page size: 100000 master list distance cutoff = 11.7548 ghost atom cutoff = 11.7548 binsize = 5.87738, bins = 8 22 1 3 neighbor lists, perpetual/occasional/extra = 1 2 0 (1) pair kim, perpetual attributes: full, newton off, cut 11.7548 pair build: full/bin/atomonly stencil: full/bin/3d bin: standard (2) compute centro/atom, occasional attributes: full, newton on pair build: full/bin/atomonly stencil: full/bin/3d bin: standard (3) compute pair/local, occasional attributes: half, newton on pair build: half/bin/atomonly/newton stencil: half/bin/3d/newton bin: standard Setting up Verlet run ... Unit style : metal Current step : 0 Time step : 0.001 Per MPI rank memory allocation (min/avg/max) = 14.74 | 14.74 | 14.74 Mbytes Step Temp E_pair E_mol TotEng Press 0 0 -10921.157 0 -10921.157 -3564.2613 Loop time of 1.90735e-06 on 1 procs for 0 steps with 2584 atoms 209.7% CPU use with 1 MPI tasks x 1 OpenMP threads MPI task timing breakdown: Section | min time | avg time | max time |%varavg| %total --------------------------------------------------------------- Pair | 0 | 0 | 0 | 0.0 | 0.00 Neigh | 0 | 0 | 0 | 0.0 | 0.00 Comm | 0 | 0 | 0 | 0.0 | 0.00 Output | 0 | 0 | 0 | 0.0 | 0.00 Modify | 0 | 0 | 0 | 0.0 | 0.00 Other | | 1.907e-06 | | |100.00 Nlocal: 2584 ave 2584 max 2584 min Histogram: 1 0 0 0 0 0 0 0 0 0 Nghost: 24237 ave 24237 max 24237 min Histogram: 1 0 0 0 0 0 0 0 0 0 Neighs: 0 ave 0 max 0 min Histogram: 1 0 0 0 0 0 0 0 0 0 FullNghs: 1.60978e+06 ave 1.60978e+06 max 1.60978e+06 min Histogram: 1 0 0 0 0 0 0 0 0 0 Total # of neighbors = 1609776 Ave neighs/atom = 622.978 Neighbor list builds = 0 Dangerous builds = 0 Setting up Verlet run ... Unit style : metal Current step : 0 Time step : 0.001 Per MPI rank memory allocation (min/avg/max) = 14.74 | 14.74 | 14.74 Mbytes Step v_pe_metal c_particle_engsum v_lx_metal v_ly_metal v_lz_metal Press v_press_metal v_pxx_metal v_pyy_metal v_pzz_metal v_mindist_metal v_csymsum_metal 0 -10921.157 -10921.157 44.943446 126.82218 4.9750167 -3564.2613 -3564.2613 -0.6376502 -10687.022 -5.123782 2.3014558 1840.8953 Loop time of 1.90735e-06 on 1 procs for 0 steps with 2584 atoms 157.3% CPU use with 1 MPI tasks x 1 OpenMP threads MPI task timing breakdown: Section | min time | avg time | max time |%varavg| %total --------------------------------------------------------------- Pair | 0 | 0 | 0 | 0.0 | 0.00 Neigh | 0 | 0 | 0 | 0.0 | 0.00 Comm | 0 | 0 | 0 | 0.0 | 0.00 Output | 0 | 0 | 0 | 0.0 | 0.00 Modify | 0 | 0 | 0 | 0.0 | 0.00 Other | | 1.907e-06 | | |100.00 Nlocal: 2584 ave 2584 max 2584 min Histogram: 1 0 0 0 0 0 0 0 0 0 Nghost: 24237 ave 24237 max 24237 min Histogram: 1 0 0 0 0 0 0 0 0 0 Neighs: 804888 ave 804888 max 804888 min Histogram: 1 0 0 0 0 0 0 0 0 0 FullNghs: 1.60978e+06 ave 1.60978e+06 max 1.60978e+06 min Histogram: 1 0 0 0 0 0 0 0 0 0 Total # of neighbors = 1609776 Ave neighs/atom = 622.978 Neighbor list builds = 0 Dangerous builds = 0 2584 -10921.1566680331 eV 2.30145580423201 Angstroms This indicates that LAMMPS ran successfully Total wall time: 0:00:10