!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!! !!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!! !!!!! !!!!! !!!!! VERIFICATION CHECK: vc-dimer-continuity-c1 !!!!! !!!!! !!!!! !!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!! !!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!! Description: Determines whether a model has a continuous energy and first derivative, i.e. belongs to the C^1 continuity class, for all possible dimers. For a model supporting N species, there are N + N!/(2(N-2)! distinct dimers for all possible species combinations. (For example if N=3, there are 3+3!/2=6 dimers. If the species are A,B,C, the 6 dimers are AA, BB, CC, AB, AC, BC.) For each dimer, the equilibrium separation and cutoff are determined. The continuity across the cutoff is assessed. Then an analysis is performed to detect any discontinuities from half the equilibrium distance to the cutoff. Although the verification check only requires C^1 continuity to pass, continuity up to 3rd order is checked and reported. Author: Ellad Tadmor ----------------------------------------------------------------------------------------------------- Results for KIM Model : Sim_LAMMPS_ReaxFF_KeithFantauzziJacob_2010_AuO__SM_974345878378_000 Supported species : Au O ----------------------------------------------------------------------------------------------------- DIMER Au--Au ----------------------------------------------------------------------------------------------------- E n e r g y E x t r e m a distance energy #iter #fn-calls warnings Equilibrium separation: 2.53492043e+00 -2.48395439e+00 32 65 none Cutoff separation: 9.99093304e+00 -2.22044473e-16 28 30 none C u t o f f S m o o t h n e s s value continuous Energy -2.22044473e-16 yes 1st-Deriv 9.27443165e-14 yes 2nd-Deriv -3.25134503e-11 yes 3rd-Deriv 7.25807654e-09 yes C o n t i n u i t y Checking continuity for r = [1.26746,9.99093] at 873 points (Delta r = 0.01000) Local edge detection based on a normalized 5th-order local difference formula T^5 is used to determine the presence of discontinuities. The tolerance is |T^5|>1.00000. (For details see Anne Gelb and Eitan Tadmor, J. Sci. Comp., 28:279-306, 2006.) Checking Energy (energy vs. distance in file "dimer-energy-AuAu.dat") ... No discontinuities found. Checking 1st-Deriv (1st-deriv vs. distance in file "dimer-energy-deriv-1-AuAu.dat") ... No discontinuities found. Checking 2nd-Deriv (2nd-deriv vs. distance in file "dimer-energy-deriv-2-AuAu.dat") ... No discontinuities found. Checking 3rd-Deriv (3rd-deriv vs. distance in file "dimer-energy-deriv-3-AuAu.dat") ... No discontinuities found. ----------------------------------------------------------------------------------------------------- DIMER O--O ----------------------------------------------------------------------------------------------------- E n e r g y E x t r e m a distance energy #iter #fn-calls warnings Equilibrium separation: 1.24439260e+00 -5.38151226e+00 27 54 none Cutoff separation: 9.99378021e+00 -2.22044605e-16 13 15 none C u t o f f S m o o t h n e s s value continuous Energy -2.22044605e-16 yes 1st-Deriv 1.19004796e-13 yes 2nd-Deriv -6.90522631e-11 yes 3rd-Deriv 2.23878510e-08 yes C o n t i n u i t y Checking continuity for r = [0.62220,9.99378] at 938 points (Delta r = 0.01000) Local edge detection based on a normalized 5th-order local difference formula T^5 is used to determine the presence of discontinuities. The tolerance is |T^5|>1.00000. (For details see Anne Gelb and Eitan Tadmor, J. Sci. Comp., 28:279-306, 2006.) Checking Energy (energy vs. distance in file "dimer-energy-OO.dat") ... No discontinuities found. Checking 1st-Deriv (1st-deriv vs. distance in file "dimer-energy-deriv-1-OO.dat") ==> Suspected discontinuity encountered at r=9.82196299e-01 (|T^5| = 1.76105362e+00) ==> Suspected discontinuity encountered at r=9.92196299e-01 (|T^5| = 1.15139036e+01) ==> Suspected discontinuity encountered at r=1.00219630e+00 (|T^5| = 1.96025167e+01) ==> Suspected discontinuity encountered at r=1.01219630e+00 (|T^5| = 1.32526911e+01) ==> Suspected discontinuity encountered at r=1.02219630e+00 (|T^5| = 3.13150658e+00) Checking 2nd-Deriv (2nd-deriv vs. distance in file "dimer-energy-deriv-2-OO.dat") ==> Suspected discontinuity encountered at r=9.32196299e-01 (|T^5| = 1.84652622e+00) ==> Suspected discontinuity encountered at r=9.42196299e-01 (|T^5| = 2.97732276e+00) ==> Suspected discontinuity encountered at r=9.52196299e-01 (|T^5| = 1.34946134e+00) ==> Suspected discontinuity encountered at r=9.62196299e-01 (|T^5| = 2.38035123e+01) ==> Suspected discontinuity encountered at r=9.72196299e-01 (|T^5| = 3.39519795e+02) ==> Suspected discontinuity encountered at r=9.82196299e-01 (|T^5| = 1.64812602e+03) ==> Suspected discontinuity encountered at r=9.92196299e-01 (|T^5| = 3.19106045e+03) ==> Suspected discontinuity encountered at r=1.00219630e+00 (|T^5| = 2.89052208e+03) ==> Suspected discontinuity encountered at r=1.01219630e+00 (|T^5| = 1.14501841e+03) ==> Suspected discontinuity encountered at r=1.02219630e+00 (|T^5| = 7.47247400e+01) ==> Suspected discontinuity encountered at r=1.03219630e+00 (|T^5| = 5.21835113e+01) ==> Suspected discontinuity encountered at r=1.04219630e+00 (|T^5| = 6.47487535e+00) ==> Suspected discontinuity encountered at r=1.05219630e+00 (|T^5| = 2.18306280e+00) ==> Suspected discontinuity encountered at r=1.06219630e+00 (|T^5| = 1.19165325e+00) ==> Suspected discontinuity encountered at r=2.56219630e+00 (|T^5| = 8.94879694e+00) ==> Suspected discontinuity encountered at r=2.57219630e+00 (|T^5| = 4.49272063e+01) ==> Suspected discontinuity encountered at r=2.58219630e+00 (|T^5| = 9.02703493e+01) ==> Suspected discontinuity encountered at r=2.59219630e+00 (|T^5| = 9.07192048e+01) ==> Suspected discontinuity encountered at r=2.60219630e+00 (|T^5| = 4.55991242e+01) ==> Suspected discontinuity encountered at r=2.61219630e+00 (|T^5| = 9.17075559e+00) Checking 3rd-Deriv (3rd-deriv vs. distance in file "dimer-energy-deriv-3-OO.dat") ==> Suspected discontinuity encountered at r=8.92196299e-01 (|T^5| = 2.97925176e+00) ==> Suspected discontinuity encountered at r=9.02196299e-01 (|T^5| = 1.20190686e+01) ==> Suspected discontinuity encountered at r=9.12196299e-01 (|T^5| = 3.42784175e+01) ==> Suspected discontinuity encountered at r=9.22196299e-01 (|T^5| = 7.77892288e+01) ==> Suspected discontinuity encountered at r=9.32196299e-01 (|T^5| = 1.26947963e+02) ==> Suspected discontinuity encountered at r=9.42196299e-01 (|T^5| = 5.73940803e+01) ==> Suspected discontinuity encountered at r=9.52196299e-01 (|T^5| = 5.44391341e+02) ==> Suspected discontinuity encountered at r=9.62196299e-01 (|T^5| = 7.16838404e+03) ==> Suspected discontinuity encountered at r=9.72196299e-01 (|T^5| = 1.56333364e+05) ==> Suspected discontinuity encountered at r=9.82196299e-01 (|T^5| = 7.29282569e+05) ==> Suspected discontinuity encountered at r=9.92196299e-01 (|T^5| = 1.51461988e+06) ==> Suspected discontinuity encountered at r=1.00219630e+00 (|T^5| = 1.65290261e+06) ==> Suspected discontinuity encountered at r=1.01219630e+00 (|T^5| = 9.70448060e+05) ==> Suspected discontinuity encountered at r=1.02219630e+00 (|T^5| = 2.81798096e+05) ==> Suspected discontinuity encountered at r=1.03219630e+00 (|T^5| = 3.05508327e+04) ==> Suspected discontinuity encountered at r=1.04219630e+00 (|T^5| = 4.84607369e+01) ==> Suspected discontinuity encountered at r=1.05219630e+00 (|T^5| = 5.55046887e+02) ==> Suspected discontinuity encountered at r=1.06219630e+00 (|T^5| = 8.31589102e+01) ==> Suspected discontinuity encountered at r=1.07219630e+00 (|T^5| = 9.38877749e+01) ==> Suspected discontinuity encountered at r=1.08219630e+00 (|T^5| = 2.64146020e+01) ==> Suspected discontinuity encountered at r=1.09219630e+00 (|T^5| = 1.83137203e+00) ==> Suspected discontinuity encountered at r=1.35219630e+00 (|T^5| = 1.34375522e+00) ==> Suspected discontinuity encountered at r=1.36219630e+00 (|T^5| = 3.87028177e+00) ==> Suspected discontinuity encountered at r=1.37219630e+00 (|T^5| = 6.69552661e+00) ==> Suspected discontinuity encountered at r=1.38219630e+00 (|T^5| = 7.66378880e+00) ==> Suspected discontinuity encountered at r=1.39219630e+00 (|T^5| = 3.81408587e+00) ==> Suspected discontinuity encountered at r=1.40219630e+00 (|T^5| = 5.84299365e+00) ==> Suspected discontinuity encountered at r=1.41219630e+00 (|T^5| = 1.68743563e+01) ==> Suspected discontinuity encountered at r=1.42219630e+00 (|T^5| = 2.03618728e+01) ==> Suspected discontinuity encountered at r=1.43219630e+00 (|T^5| = 1.07918883e+01) ==> Suspected discontinuity encountered at r=1.44219630e+00 (|T^5| = 6.41804255e+00) ==> Suspected discontinuity encountered at r=1.45219630e+00 (|T^5| = 1.86404285e+01) ==> Suspected discontinuity encountered at r=1.46219630e+00 (|T^5| = 1.82305879e+01) ==> Suspected discontinuity encountered at r=1.47219630e+00 (|T^5| = 8.59295681e+00) ==> Suspected discontinuity encountered at r=1.48219630e+00 (|T^5| = 1.51426042e+00) ==> Suspected discontinuity encountered at r=1.49219630e+00 (|T^5| = 6.47635597e+00) ==> Suspected discontinuity encountered at r=1.50219630e+00 (|T^5| = 6.40600374e+00) ==> Suspected discontinuity encountered at r=1.51219630e+00 (|T^5| = 4.13659407e+00) ==> Suspected discontinuity encountered at r=1.52219630e+00 (|T^5| = 1.86023242e+00) ==> Suspected discontinuity encountered at r=2.56219630e+00 (|T^5| = 7.19588521e+03) ==> Suspected discontinuity encountered at r=2.57219630e+00 (|T^5| = 3.59864324e+04) ==> Suspected discontinuity encountered at r=2.58219630e+00 (|T^5| = 7.19815078e+04) ==> Suspected discontinuity encountered at r=2.59219630e+00 (|T^5| = 7.19886942e+04) ==> Suspected discontinuity encountered at r=2.60219630e+00 (|T^5| = 3.59976623e+04) ==> Suspected discontinuity encountered at r=2.61219630e+00 (|T^5| = 7.20017343e+03) ----------------------------------------------------------------------------------------------------- DIMER Au--O ----------------------------------------------------------------------------------------------------- E n e r g y E x t r e m a distance energy #iter #fn-calls warnings Equilibrium separation: 1.77228107e+00 -2.39656788e+00 31 70 none ** Unable to obtain upper bracket for cutoff radius ** WARNING: NOT CHECKING CONTINUITY FOR Au-O DIMER. ===================================================================================================== SUMMARY of Model Continuity Results Across All Dimers: continuous ----------------------------- Energy yes 1st-Deriv ** NO ** 2nd-Deriv ** NO ** 3rd-Deriv ** NO ** ===================================================================================================== Continuity must be C^1 or higher to pass this verification check. Grade: F Comment: The model is C^0 continuous. This means that the model has continuous energy, but a discontinuous first derivative.