/usr/local/lib/python3.8/dist-packages/ase/atoms.py:504: VisibleDeprecationWarning: Creating an ndarray from ragged nested sequences (which is a list-or-tuple of lists-or-tuples-or ndarrays with different lengths or shapes) is deprecated. If you meant to do this, you must specify 'dtype=object' when creating the ndarray. a = np.asarray(a) /work2/08773/bwaters/stampede2/bwaters/job-1f6b921e-1faf-4faa-873d-5d2503c834f5-007-dfc6a665-0271-4bcf-bdee-a09f92e56ecf/VC_303890932454_004-and-MO_070797404269_001-1656534066/staged_job_files/repository/vc/DimerContinuityC1__VC_303890932454_004/runner:596: DeprecationWarning: np.asscalar(a) is deprecated since NumPy v1.16, use a.item() instead nth[n], np.asscalar(val), yesno[is_continuous] /work2/08773/bwaters/stampede2/bwaters/job-1f6b921e-1faf-4faa-873d-5d2503c834f5-007-dfc6a665-0271-4bcf-bdee-a09f92e56ecf/VC_303890932454_004-and-MO_070797404269_001-1656534066/staged_job_files/repository/vc/DimerContinuityC1__VC_303890932454_004/runner:596: DeprecationWarning: np.asscalar(a) is deprecated since NumPy v1.16, use a.item() instead nth[n], np.asscalar(val), yesno[is_continuous] /work2/08773/bwaters/stampede2/bwaters/job-1f6b921e-1faf-4faa-873d-5d2503c834f5-007-dfc6a665-0271-4bcf-bdee-a09f92e56ecf/VC_303890932454_004-and-MO_070797404269_001-1656534066/staged_job_files/repository/vc/DimerContinuityC1__VC_303890932454_004/runner:596: DeprecationWarning: np.asscalar(a) is deprecated since NumPy v1.16, use a.item() instead nth[n], np.asscalar(val), yesno[is_continuous] /work2/08773/bwaters/stampede2/bwaters/job-1f6b921e-1faf-4faa-873d-5d2503c834f5-007-dfc6a665-0271-4bcf-bdee-a09f92e56ecf/VC_303890932454_004-and-MO_070797404269_001-1656534066/staged_job_files/repository/vc/DimerContinuityC1__VC_303890932454_004/runner:596: DeprecationWarning: np.asscalar(a) is deprecated since NumPy v1.16, use a.item() instead nth[n], np.asscalar(val), yesno[is_continuous] /work2/08773/bwaters/stampede2/bwaters/job-1f6b921e-1faf-4faa-873d-5d2503c834f5-007-dfc6a665-0271-4bcf-bdee-a09f92e56ecf/VC_303890932454_004-and-MO_070797404269_001-1656534066/staged_job_files/repository/vc/DimerContinuityC1__VC_303890932454_004/runner:677: DeprecationWarning: np.asscalar(a) is deprecated since NumPy v1.16, use a.item() instead e.append(np.asscalar(val)) /usr/local/lib/python3.8/dist-packages/ase/atoms.py:504: VisibleDeprecationWarning: Creating an ndarray from ragged nested sequences (which is a list-or-tuple of lists-or-tuples-or ndarrays with different lengths or shapes) is deprecated. If you meant to do this, you must specify 'dtype=object' when creating the ndarray. a = np.asarray(a) /work2/08773/bwaters/stampede2/bwaters/job-1f6b921e-1faf-4faa-873d-5d2503c834f5-007-dfc6a665-0271-4bcf-bdee-a09f92e56ecf/VC_303890932454_004-and-MO_070797404269_001-1656534066/staged_job_files/repository/vc/DimerContinuityC1__VC_303890932454_004/runner:596: DeprecationWarning: np.asscalar(a) is deprecated since NumPy v1.16, use a.item() instead nth[n], np.asscalar(val), yesno[is_continuous] /work2/08773/bwaters/stampede2/bwaters/job-1f6b921e-1faf-4faa-873d-5d2503c834f5-007-dfc6a665-0271-4bcf-bdee-a09f92e56ecf/VC_303890932454_004-and-MO_070797404269_001-1656534066/staged_job_files/repository/vc/DimerContinuityC1__VC_303890932454_004/runner:596: DeprecationWarning: np.asscalar(a) is deprecated since NumPy v1.16, use a.item() instead nth[n], np.asscalar(val), yesno[is_continuous] /work2/08773/bwaters/stampede2/bwaters/job-1f6b921e-1faf-4faa-873d-5d2503c834f5-007-dfc6a665-0271-4bcf-bdee-a09f92e56ecf/VC_303890932454_004-and-MO_070797404269_001-1656534066/staged_job_files/repository/vc/DimerContinuityC1__VC_303890932454_004/runner:596: DeprecationWarning: np.asscalar(a) is deprecated since NumPy v1.16, use a.item() instead nth[n], np.asscalar(val), yesno[is_continuous] /work2/08773/bwaters/stampede2/bwaters/job-1f6b921e-1faf-4faa-873d-5d2503c834f5-007-dfc6a665-0271-4bcf-bdee-a09f92e56ecf/VC_303890932454_004-and-MO_070797404269_001-1656534066/staged_job_files/repository/vc/DimerContinuityC1__VC_303890932454_004/runner:677: DeprecationWarning: np.asscalar(a) is deprecated since NumPy v1.16, use a.item() instead e.append(np.asscalar(val)) /usr/local/lib/python3.8/dist-packages/ase/atoms.py:504: VisibleDeprecationWarning: Creating an ndarray from ragged nested sequences (which is a list-or-tuple of lists-or-tuples-or ndarrays with different lengths or shapes) is deprecated. If you meant to do this, you must specify 'dtype=object' when creating the ndarray. a = np.asarray(a) /work2/08773/bwaters/stampede2/bwaters/job-1f6b921e-1faf-4faa-873d-5d2503c834f5-007-dfc6a665-0271-4bcf-bdee-a09f92e56ecf/VC_303890932454_004-and-MO_070797404269_001-1656534066/staged_job_files/repository/vc/DimerContinuityC1__VC_303890932454_004/runner:596: DeprecationWarning: np.asscalar(a) is deprecated since NumPy v1.16, use a.item() instead nth[n], np.asscalar(val), yesno[is_continuous] /work2/08773/bwaters/stampede2/bwaters/job-1f6b921e-1faf-4faa-873d-5d2503c834f5-007-dfc6a665-0271-4bcf-bdee-a09f92e56ecf/VC_303890932454_004-and-MO_070797404269_001-1656534066/staged_job_files/repository/vc/DimerContinuityC1__VC_303890932454_004/runner:596: DeprecationWarning: np.asscalar(a) is deprecated since NumPy v1.16, use a.item() instead nth[n], np.asscalar(val), yesno[is_continuous] /work2/08773/bwaters/stampede2/bwaters/job-1f6b921e-1faf-4faa-873d-5d2503c834f5-007-dfc6a665-0271-4bcf-bdee-a09f92e56ecf/VC_303890932454_004-and-MO_070797404269_001-1656534066/staged_job_files/repository/vc/DimerContinuityC1__VC_303890932454_004/runner:596: DeprecationWarning: np.asscalar(a) is deprecated since NumPy v1.16, use a.item() instead nth[n], np.asscalar(val), yesno[is_continuous] /work2/08773/bwaters/stampede2/bwaters/job-1f6b921e-1faf-4faa-873d-5d2503c834f5-007-dfc6a665-0271-4bcf-bdee-a09f92e56ecf/VC_303890932454_004-and-MO_070797404269_001-1656534066/staged_job_files/repository/vc/DimerContinuityC1__VC_303890932454_004/runner:677: DeprecationWarning: np.asscalar(a) is deprecated since NumPy v1.16, use a.item() instead e.append(np.asscalar(val)) {"realtime":235.66,"usertime":236.07,"systime":21.57,"memmax":127064,"memavg":0}