/usr/local/lib/python3.8/dist-packages/ase/atoms.py:504: VisibleDeprecationWarning: Creating an ndarray from ragged nested sequences (which is a list-or-tuple of lists-or-tuples-or ndarrays with different lengths or shapes) is deprecated. If you meant to do this, you must specify 'dtype=object' when creating the ndarray. a = np.asarray(a) /work/07753/dskarls/stampede2/jobs/dskarls/job-99f70f6b-5a35-401c-8e90-3159ce45e90b-007-1776ab26-7805-4769-ad0c-120bef2db368/VC_303890932454_004-and-MO_086900950763_001-1653018995/staged_job_files/repository/vc/DimerContinuityC1__VC_303890932454_004/runner:596: DeprecationWarning: np.asscalar(a) is deprecated since NumPy v1.16, use a.item() instead nth[n], np.asscalar(val), yesno[is_continuous] /work/07753/dskarls/stampede2/jobs/dskarls/job-99f70f6b-5a35-401c-8e90-3159ce45e90b-007-1776ab26-7805-4769-ad0c-120bef2db368/VC_303890932454_004-and-MO_086900950763_001-1653018995/staged_job_files/repository/vc/DimerContinuityC1__VC_303890932454_004/runner:596: DeprecationWarning: np.asscalar(a) is deprecated since NumPy v1.16, use a.item() instead nth[n], np.asscalar(val), yesno[is_continuous] /work/07753/dskarls/stampede2/jobs/dskarls/job-99f70f6b-5a35-401c-8e90-3159ce45e90b-007-1776ab26-7805-4769-ad0c-120bef2db368/VC_303890932454_004-and-MO_086900950763_001-1653018995/staged_job_files/repository/vc/DimerContinuityC1__VC_303890932454_004/runner:596: DeprecationWarning: np.asscalar(a) is deprecated since NumPy v1.16, use a.item() instead nth[n], np.asscalar(val), yesno[is_continuous] /work/07753/dskarls/stampede2/jobs/dskarls/job-99f70f6b-5a35-401c-8e90-3159ce45e90b-007-1776ab26-7805-4769-ad0c-120bef2db368/VC_303890932454_004-and-MO_086900950763_001-1653018995/staged_job_files/repository/vc/DimerContinuityC1__VC_303890932454_004/runner:596: DeprecationWarning: np.asscalar(a) is deprecated since NumPy v1.16, use a.item() instead nth[n], np.asscalar(val), yesno[is_continuous] /work/07753/dskarls/stampede2/jobs/dskarls/job-99f70f6b-5a35-401c-8e90-3159ce45e90b-007-1776ab26-7805-4769-ad0c-120bef2db368/VC_303890932454_004-and-MO_086900950763_001-1653018995/staged_job_files/repository/vc/DimerContinuityC1__VC_303890932454_004/runner:677: DeprecationWarning: np.asscalar(a) is deprecated since NumPy v1.16, use a.item() instead e.append(np.asscalar(val)) /usr/local/lib/python3.8/dist-packages/ase/atoms.py:504: VisibleDeprecationWarning: Creating an ndarray from ragged nested sequences (which is a list-or-tuple of lists-or-tuples-or ndarrays with different lengths or shapes) is deprecated. If you meant to do this, you must specify 'dtype=object' when creating the ndarray. a = np.asarray(a) /work/07753/dskarls/stampede2/jobs/dskarls/job-99f70f6b-5a35-401c-8e90-3159ce45e90b-007-1776ab26-7805-4769-ad0c-120bef2db368/VC_303890932454_004-and-MO_086900950763_001-1653018995/staged_job_files/repository/vc/DimerContinuityC1__VC_303890932454_004/runner:596: DeprecationWarning: np.asscalar(a) is deprecated since NumPy v1.16, use a.item() instead nth[n], np.asscalar(val), yesno[is_continuous] /work/07753/dskarls/stampede2/jobs/dskarls/job-99f70f6b-5a35-401c-8e90-3159ce45e90b-007-1776ab26-7805-4769-ad0c-120bef2db368/VC_303890932454_004-and-MO_086900950763_001-1653018995/staged_job_files/repository/vc/DimerContinuityC1__VC_303890932454_004/runner:596: DeprecationWarning: np.asscalar(a) is deprecated since NumPy v1.16, use a.item() instead nth[n], np.asscalar(val), yesno[is_continuous] /work/07753/dskarls/stampede2/jobs/dskarls/job-99f70f6b-5a35-401c-8e90-3159ce45e90b-007-1776ab26-7805-4769-ad0c-120bef2db368/VC_303890932454_004-and-MO_086900950763_001-1653018995/staged_job_files/repository/vc/DimerContinuityC1__VC_303890932454_004/runner:596: DeprecationWarning: np.asscalar(a) is deprecated since NumPy v1.16, use a.item() instead nth[n], np.asscalar(val), yesno[is_continuous] /work/07753/dskarls/stampede2/jobs/dskarls/job-99f70f6b-5a35-401c-8e90-3159ce45e90b-007-1776ab26-7805-4769-ad0c-120bef2db368/VC_303890932454_004-and-MO_086900950763_001-1653018995/staged_job_files/repository/vc/DimerContinuityC1__VC_303890932454_004/runner:677: DeprecationWarning: np.asscalar(a) is deprecated since NumPy v1.16, use a.item() instead e.append(np.asscalar(val)) /usr/local/lib/python3.8/dist-packages/ase/atoms.py:504: VisibleDeprecationWarning: Creating an ndarray from ragged nested sequences (which is a list-or-tuple of lists-or-tuples-or ndarrays with different lengths or shapes) is deprecated. If you meant to do this, you must specify 'dtype=object' when creating the ndarray. a = np.asarray(a) /work/07753/dskarls/stampede2/jobs/dskarls/job-99f70f6b-5a35-401c-8e90-3159ce45e90b-007-1776ab26-7805-4769-ad0c-120bef2db368/VC_303890932454_004-and-MO_086900950763_001-1653018995/staged_job_files/repository/vc/DimerContinuityC1__VC_303890932454_004/runner:596: DeprecationWarning: np.asscalar(a) is deprecated since NumPy v1.16, use a.item() instead nth[n], np.asscalar(val), yesno[is_continuous] /work/07753/dskarls/stampede2/jobs/dskarls/job-99f70f6b-5a35-401c-8e90-3159ce45e90b-007-1776ab26-7805-4769-ad0c-120bef2db368/VC_303890932454_004-and-MO_086900950763_001-1653018995/staged_job_files/repository/vc/DimerContinuityC1__VC_303890932454_004/runner:596: DeprecationWarning: np.asscalar(a) is deprecated since NumPy v1.16, use a.item() instead nth[n], np.asscalar(val), yesno[is_continuous] /work/07753/dskarls/stampede2/jobs/dskarls/job-99f70f6b-5a35-401c-8e90-3159ce45e90b-007-1776ab26-7805-4769-ad0c-120bef2db368/VC_303890932454_004-and-MO_086900950763_001-1653018995/staged_job_files/repository/vc/DimerContinuityC1__VC_303890932454_004/runner:596: DeprecationWarning: np.asscalar(a) is deprecated since NumPy v1.16, use a.item() instead nth[n], np.asscalar(val), yesno[is_continuous] /work/07753/dskarls/stampede2/jobs/dskarls/job-99f70f6b-5a35-401c-8e90-3159ce45e90b-007-1776ab26-7805-4769-ad0c-120bef2db368/VC_303890932454_004-and-MO_086900950763_001-1653018995/staged_job_files/repository/vc/DimerContinuityC1__VC_303890932454_004/runner:677: DeprecationWarning: np.asscalar(a) is deprecated since NumPy v1.16, use a.item() instead e.append(np.asscalar(val)) {"realtime":183.55,"usertime":187.08,"systime":20.41,"memmax":139676,"memavg":0}