/usr/local/lib/python3.8/dist-packages/ase/atoms.py:504: VisibleDeprecationWarning: Creating an ndarray from ragged nested sequences (which is a list-or-tuple of lists-or-tuples-or ndarrays with different lengths or shapes) is deprecated. If you meant to do this, you must specify 'dtype=object' when creating the ndarray. a = np.asarray(a) /work2/08773/bwaters/stampede2/bwaters/job-d67fb574-5e09-41ce-88b9-8257c3663060-007-e1f6c62f-1316-447e-be4e-cb2c059c9fe5/VC_303890932454_004-and-MO_143373446649_000-1659563125/staged_job_files/repository/vc/DimerContinuityC1__VC_303890932454_004/runner:596: DeprecationWarning: np.asscalar(a) is deprecated since NumPy v1.16, use a.item() instead nth[n], np.asscalar(val), yesno[is_continuous] /work2/08773/bwaters/stampede2/bwaters/job-d67fb574-5e09-41ce-88b9-8257c3663060-007-e1f6c62f-1316-447e-be4e-cb2c059c9fe5/VC_303890932454_004-and-MO_143373446649_000-1659563125/staged_job_files/repository/vc/DimerContinuityC1__VC_303890932454_004/runner:596: DeprecationWarning: np.asscalar(a) is deprecated since NumPy v1.16, use a.item() instead nth[n], np.asscalar(val), yesno[is_continuous] /work2/08773/bwaters/stampede2/bwaters/job-d67fb574-5e09-41ce-88b9-8257c3663060-007-e1f6c62f-1316-447e-be4e-cb2c059c9fe5/VC_303890932454_004-and-MO_143373446649_000-1659563125/staged_job_files/repository/vc/DimerContinuityC1__VC_303890932454_004/runner:596: DeprecationWarning: np.asscalar(a) is deprecated since NumPy v1.16, use a.item() instead nth[n], np.asscalar(val), yesno[is_continuous] /work2/08773/bwaters/stampede2/bwaters/job-d67fb574-5e09-41ce-88b9-8257c3663060-007-e1f6c62f-1316-447e-be4e-cb2c059c9fe5/VC_303890932454_004-and-MO_143373446649_000-1659563125/staged_job_files/repository/vc/DimerContinuityC1__VC_303890932454_004/runner:596: DeprecationWarning: np.asscalar(a) is deprecated since NumPy v1.16, use a.item() instead nth[n], np.asscalar(val), yesno[is_continuous] /work2/08773/bwaters/stampede2/bwaters/job-d67fb574-5e09-41ce-88b9-8257c3663060-007-e1f6c62f-1316-447e-be4e-cb2c059c9fe5/VC_303890932454_004-and-MO_143373446649_000-1659563125/staged_job_files/repository/vc/DimerContinuityC1__VC_303890932454_004/runner:677: DeprecationWarning: np.asscalar(a) is deprecated since NumPy v1.16, use a.item() instead e.append(np.asscalar(val)) {"realtime":66.87,"usertime":71.82,"systime":19.16,"memmax":90596,"memavg":0}