/usr/local/lib/python3.8/dist-packages/ase/atoms.py:504: VisibleDeprecationWarning: Creating an ndarray from ragged nested sequences (which is a list-or-tuple of lists-or-tuples-or ndarrays with different lengths or shapes) is deprecated. If you meant to do this, you must specify 'dtype=object' when creating the ndarray. a = np.asarray(a) /scratch.hyperion/kim-jobs/jobs/dskarls/job-80ba3e32-15cd-48b4-a9f9-b7b0a7879ab8-007-036a8996-e9b9-45d0-9a04-f9920b705c2e/VC_303890932454_004-and-MO_245095684871_004-1639611581/staged_job_files/repository/vc/DimerContinuityC1__VC_303890932454_004/runner:596: DeprecationWarning: np.asscalar(a) is deprecated since NumPy v1.16, use a.item() instead nth[n], np.asscalar(val), yesno[is_continuous] /scratch.hyperion/kim-jobs/jobs/dskarls/job-80ba3e32-15cd-48b4-a9f9-b7b0a7879ab8-007-036a8996-e9b9-45d0-9a04-f9920b705c2e/VC_303890932454_004-and-MO_245095684871_004-1639611581/staged_job_files/repository/vc/DimerContinuityC1__VC_303890932454_004/runner:596: DeprecationWarning: np.asscalar(a) is deprecated since NumPy v1.16, use a.item() instead nth[n], np.asscalar(val), yesno[is_continuous] /scratch.hyperion/kim-jobs/jobs/dskarls/job-80ba3e32-15cd-48b4-a9f9-b7b0a7879ab8-007-036a8996-e9b9-45d0-9a04-f9920b705c2e/VC_303890932454_004-and-MO_245095684871_004-1639611581/staged_job_files/repository/vc/DimerContinuityC1__VC_303890932454_004/runner:596: DeprecationWarning: np.asscalar(a) is deprecated since NumPy v1.16, use a.item() instead nth[n], np.asscalar(val), yesno[is_continuous] /scratch.hyperion/kim-jobs/jobs/dskarls/job-80ba3e32-15cd-48b4-a9f9-b7b0a7879ab8-007-036a8996-e9b9-45d0-9a04-f9920b705c2e/VC_303890932454_004-and-MO_245095684871_004-1639611581/staged_job_files/repository/vc/DimerContinuityC1__VC_303890932454_004/runner:596: DeprecationWarning: np.asscalar(a) is deprecated since NumPy v1.16, use a.item() instead nth[n], np.asscalar(val), yesno[is_continuous] /scratch.hyperion/kim-jobs/jobs/dskarls/job-80ba3e32-15cd-48b4-a9f9-b7b0a7879ab8-007-036a8996-e9b9-45d0-9a04-f9920b705c2e/VC_303890932454_004-and-MO_245095684871_004-1639611581/staged_job_files/repository/vc/DimerContinuityC1__VC_303890932454_004/runner:677: DeprecationWarning: np.asscalar(a) is deprecated since NumPy v1.16, use a.item() instead e.append(np.asscalar(val)) {"realtime":4.84,"usertime":3.85,"systime":1.68,"memmax":57432,"memavg":0}