/usr/local/lib/python3.8/dist-packages/ase/atoms.py:504: VisibleDeprecationWarning: Creating an ndarray from ragged nested sequences (which is a list-or-tuple of lists-or-tuples-or ndarrays with different lengths or shapes) is deprecated. If you meant to do this, you must specify 'dtype=object' when creating the ndarray. a = np.asarray(a) /work/07753/dskarls/stampede2/jobs/dskarls/job-26bf3f38-10fe-4c35-8058-ce2cb1200f93-007-3fa59dd2-13a8-4116-98ed-5260f7fc69d1/VC_303890932454_004-and-MO_325675357262_001-1653195372/staged_job_files/repository/vc/DimerContinuityC1__VC_303890932454_004/runner:596: DeprecationWarning: np.asscalar(a) is deprecated since NumPy v1.16, use a.item() instead nth[n], np.asscalar(val), yesno[is_continuous] /work/07753/dskarls/stampede2/jobs/dskarls/job-26bf3f38-10fe-4c35-8058-ce2cb1200f93-007-3fa59dd2-13a8-4116-98ed-5260f7fc69d1/VC_303890932454_004-and-MO_325675357262_001-1653195372/staged_job_files/repository/vc/DimerContinuityC1__VC_303890932454_004/runner:596: DeprecationWarning: np.asscalar(a) is deprecated since NumPy v1.16, use a.item() instead nth[n], np.asscalar(val), yesno[is_continuous] /work/07753/dskarls/stampede2/jobs/dskarls/job-26bf3f38-10fe-4c35-8058-ce2cb1200f93-007-3fa59dd2-13a8-4116-98ed-5260f7fc69d1/VC_303890932454_004-and-MO_325675357262_001-1653195372/staged_job_files/repository/vc/DimerContinuityC1__VC_303890932454_004/runner:596: DeprecationWarning: np.asscalar(a) is deprecated since NumPy v1.16, use a.item() instead nth[n], np.asscalar(val), yesno[is_continuous] /work/07753/dskarls/stampede2/jobs/dskarls/job-26bf3f38-10fe-4c35-8058-ce2cb1200f93-007-3fa59dd2-13a8-4116-98ed-5260f7fc69d1/VC_303890932454_004-and-MO_325675357262_001-1653195372/staged_job_files/repository/vc/DimerContinuityC1__VC_303890932454_004/runner:596: DeprecationWarning: np.asscalar(a) is deprecated since NumPy v1.16, use a.item() instead nth[n], np.asscalar(val), yesno[is_continuous] /work/07753/dskarls/stampede2/jobs/dskarls/job-26bf3f38-10fe-4c35-8058-ce2cb1200f93-007-3fa59dd2-13a8-4116-98ed-5260f7fc69d1/VC_303890932454_004-and-MO_325675357262_001-1653195372/staged_job_files/repository/vc/DimerContinuityC1__VC_303890932454_004/runner:677: DeprecationWarning: np.asscalar(a) is deprecated since NumPy v1.16, use a.item() instead e.append(np.asscalar(val)) /usr/local/lib/python3.8/dist-packages/ase/atoms.py:504: VisibleDeprecationWarning: Creating an ndarray from ragged nested sequences (which is a list-or-tuple of lists-or-tuples-or ndarrays with different lengths or shapes) is deprecated. If you meant to do this, you must specify 'dtype=object' when creating the ndarray. a = np.asarray(a) /work/07753/dskarls/stampede2/jobs/dskarls/job-26bf3f38-10fe-4c35-8058-ce2cb1200f93-007-3fa59dd2-13a8-4116-98ed-5260f7fc69d1/VC_303890932454_004-and-MO_325675357262_001-1653195372/staged_job_files/repository/vc/DimerContinuityC1__VC_303890932454_004/runner:596: DeprecationWarning: np.asscalar(a) is deprecated since NumPy v1.16, use a.item() instead nth[n], np.asscalar(val), yesno[is_continuous] /work/07753/dskarls/stampede2/jobs/dskarls/job-26bf3f38-10fe-4c35-8058-ce2cb1200f93-007-3fa59dd2-13a8-4116-98ed-5260f7fc69d1/VC_303890932454_004-and-MO_325675357262_001-1653195372/staged_job_files/repository/vc/DimerContinuityC1__VC_303890932454_004/runner:596: DeprecationWarning: np.asscalar(a) is deprecated since NumPy v1.16, use a.item() instead nth[n], np.asscalar(val), yesno[is_continuous] /work/07753/dskarls/stampede2/jobs/dskarls/job-26bf3f38-10fe-4c35-8058-ce2cb1200f93-007-3fa59dd2-13a8-4116-98ed-5260f7fc69d1/VC_303890932454_004-and-MO_325675357262_001-1653195372/staged_job_files/repository/vc/DimerContinuityC1__VC_303890932454_004/runner:596: DeprecationWarning: np.asscalar(a) is deprecated since NumPy v1.16, use a.item() instead nth[n], np.asscalar(val), yesno[is_continuous] /work/07753/dskarls/stampede2/jobs/dskarls/job-26bf3f38-10fe-4c35-8058-ce2cb1200f93-007-3fa59dd2-13a8-4116-98ed-5260f7fc69d1/VC_303890932454_004-and-MO_325675357262_001-1653195372/staged_job_files/repository/vc/DimerContinuityC1__VC_303890932454_004/runner:677: DeprecationWarning: np.asscalar(a) is deprecated since NumPy v1.16, use a.item() instead e.append(np.asscalar(val)) /usr/local/lib/python3.8/dist-packages/ase/atoms.py:504: VisibleDeprecationWarning: Creating an ndarray from ragged nested sequences (which is a list-or-tuple of lists-or-tuples-or ndarrays with different lengths or shapes) is deprecated. If you meant to do this, you must specify 'dtype=object' when creating the ndarray. a = np.asarray(a) /work/07753/dskarls/stampede2/jobs/dskarls/job-26bf3f38-10fe-4c35-8058-ce2cb1200f93-007-3fa59dd2-13a8-4116-98ed-5260f7fc69d1/VC_303890932454_004-and-MO_325675357262_001-1653195372/staged_job_files/repository/vc/DimerContinuityC1__VC_303890932454_004/runner:596: DeprecationWarning: np.asscalar(a) is deprecated since NumPy v1.16, use a.item() instead nth[n], np.asscalar(val), yesno[is_continuous] /work/07753/dskarls/stampede2/jobs/dskarls/job-26bf3f38-10fe-4c35-8058-ce2cb1200f93-007-3fa59dd2-13a8-4116-98ed-5260f7fc69d1/VC_303890932454_004-and-MO_325675357262_001-1653195372/staged_job_files/repository/vc/DimerContinuityC1__VC_303890932454_004/runner:596: DeprecationWarning: np.asscalar(a) is deprecated since NumPy v1.16, use a.item() instead nth[n], np.asscalar(val), yesno[is_continuous] /work/07753/dskarls/stampede2/jobs/dskarls/job-26bf3f38-10fe-4c35-8058-ce2cb1200f93-007-3fa59dd2-13a8-4116-98ed-5260f7fc69d1/VC_303890932454_004-and-MO_325675357262_001-1653195372/staged_job_files/repository/vc/DimerContinuityC1__VC_303890932454_004/runner:596: DeprecationWarning: np.asscalar(a) is deprecated since NumPy v1.16, use a.item() instead nth[n], np.asscalar(val), yesno[is_continuous] /work/07753/dskarls/stampede2/jobs/dskarls/job-26bf3f38-10fe-4c35-8058-ce2cb1200f93-007-3fa59dd2-13a8-4116-98ed-5260f7fc69d1/VC_303890932454_004-and-MO_325675357262_001-1653195372/staged_job_files/repository/vc/DimerContinuityC1__VC_303890932454_004/runner:677: DeprecationWarning: np.asscalar(a) is deprecated since NumPy v1.16, use a.item() instead e.append(np.asscalar(val)) {"realtime":810.81,"usertime":813.67,"systime":20.46,"memmax":115840,"memavg":0}