/usr/local/lib/python3.8/dist-packages/ase/atoms.py:504: VisibleDeprecationWarning: Creating an ndarray from ragged nested sequences (which is a list-or-tuple of lists-or-tuples-or ndarrays with different lengths or shapes) is deprecated. If you meant to do this, you must specify 'dtype=object' when creating the ndarray. a = np.asarray(a) /work2/08773/bwaters/stampede2/bwaters/job-f3fdde29-9b70-4660-a1e1-1cffc034afca-007-e2960af7-5bd2-4fe1-a0d3-3a644d72bc09/VC_303890932454_004-and-MO_612225165948_001-1657579473/staged_job_files/repository/vc/DimerContinuityC1__VC_303890932454_004/runner:596: DeprecationWarning: np.asscalar(a) is deprecated since NumPy v1.16, use a.item() instead nth[n], np.asscalar(val), yesno[is_continuous] /work2/08773/bwaters/stampede2/bwaters/job-f3fdde29-9b70-4660-a1e1-1cffc034afca-007-e2960af7-5bd2-4fe1-a0d3-3a644d72bc09/VC_303890932454_004-and-MO_612225165948_001-1657579473/staged_job_files/repository/vc/DimerContinuityC1__VC_303890932454_004/runner:596: DeprecationWarning: np.asscalar(a) is deprecated since NumPy v1.16, use a.item() instead nth[n], np.asscalar(val), yesno[is_continuous] /work2/08773/bwaters/stampede2/bwaters/job-f3fdde29-9b70-4660-a1e1-1cffc034afca-007-e2960af7-5bd2-4fe1-a0d3-3a644d72bc09/VC_303890932454_004-and-MO_612225165948_001-1657579473/staged_job_files/repository/vc/DimerContinuityC1__VC_303890932454_004/runner:596: DeprecationWarning: np.asscalar(a) is deprecated since NumPy v1.16, use a.item() instead nth[n], np.asscalar(val), yesno[is_continuous] /work2/08773/bwaters/stampede2/bwaters/job-f3fdde29-9b70-4660-a1e1-1cffc034afca-007-e2960af7-5bd2-4fe1-a0d3-3a644d72bc09/VC_303890932454_004-and-MO_612225165948_001-1657579473/staged_job_files/repository/vc/DimerContinuityC1__VC_303890932454_004/runner:596: DeprecationWarning: np.asscalar(a) is deprecated since NumPy v1.16, use a.item() instead nth[n], np.asscalar(val), yesno[is_continuous] /work2/08773/bwaters/stampede2/bwaters/job-f3fdde29-9b70-4660-a1e1-1cffc034afca-007-e2960af7-5bd2-4fe1-a0d3-3a644d72bc09/VC_303890932454_004-and-MO_612225165948_001-1657579473/staged_job_files/repository/vc/DimerContinuityC1__VC_303890932454_004/runner:677: DeprecationWarning: np.asscalar(a) is deprecated since NumPy v1.16, use a.item() instead e.append(np.asscalar(val)) /usr/local/lib/python3.8/dist-packages/ase/atoms.py:504: VisibleDeprecationWarning: Creating an ndarray from ragged nested sequences (which is a list-or-tuple of lists-or-tuples-or ndarrays with different lengths or shapes) is deprecated. If you meant to do this, you must specify 'dtype=object' when creating the ndarray. a = np.asarray(a) /work2/08773/bwaters/stampede2/bwaters/job-f3fdde29-9b70-4660-a1e1-1cffc034afca-007-e2960af7-5bd2-4fe1-a0d3-3a644d72bc09/VC_303890932454_004-and-MO_612225165948_001-1657579473/staged_job_files/repository/vc/DimerContinuityC1__VC_303890932454_004/runner:596: DeprecationWarning: np.asscalar(a) is deprecated since NumPy v1.16, use a.item() instead nth[n], np.asscalar(val), yesno[is_continuous] /work2/08773/bwaters/stampede2/bwaters/job-f3fdde29-9b70-4660-a1e1-1cffc034afca-007-e2960af7-5bd2-4fe1-a0d3-3a644d72bc09/VC_303890932454_004-and-MO_612225165948_001-1657579473/staged_job_files/repository/vc/DimerContinuityC1__VC_303890932454_004/runner:596: DeprecationWarning: np.asscalar(a) is deprecated since NumPy v1.16, use a.item() instead nth[n], np.asscalar(val), yesno[is_continuous] /work2/08773/bwaters/stampede2/bwaters/job-f3fdde29-9b70-4660-a1e1-1cffc034afca-007-e2960af7-5bd2-4fe1-a0d3-3a644d72bc09/VC_303890932454_004-and-MO_612225165948_001-1657579473/staged_job_files/repository/vc/DimerContinuityC1__VC_303890932454_004/runner:596: DeprecationWarning: np.asscalar(a) is deprecated since NumPy v1.16, use a.item() instead nth[n], np.asscalar(val), yesno[is_continuous] /work2/08773/bwaters/stampede2/bwaters/job-f3fdde29-9b70-4660-a1e1-1cffc034afca-007-e2960af7-5bd2-4fe1-a0d3-3a644d72bc09/VC_303890932454_004-and-MO_612225165948_001-1657579473/staged_job_files/repository/vc/DimerContinuityC1__VC_303890932454_004/runner:677: DeprecationWarning: np.asscalar(a) is deprecated since NumPy v1.16, use a.item() instead e.append(np.asscalar(val)) /usr/local/lib/python3.8/dist-packages/ase/atoms.py:504: VisibleDeprecationWarning: Creating an ndarray from ragged nested sequences (which is a list-or-tuple of lists-or-tuples-or ndarrays with different lengths or shapes) is deprecated. If you meant to do this, you must specify 'dtype=object' when creating the ndarray. a = np.asarray(a) /work2/08773/bwaters/stampede2/bwaters/job-f3fdde29-9b70-4660-a1e1-1cffc034afca-007-e2960af7-5bd2-4fe1-a0d3-3a644d72bc09/VC_303890932454_004-and-MO_612225165948_001-1657579473/staged_job_files/repository/vc/DimerContinuityC1__VC_303890932454_004/runner:596: DeprecationWarning: np.asscalar(a) is deprecated since NumPy v1.16, use a.item() instead nth[n], np.asscalar(val), yesno[is_continuous] /work2/08773/bwaters/stampede2/bwaters/job-f3fdde29-9b70-4660-a1e1-1cffc034afca-007-e2960af7-5bd2-4fe1-a0d3-3a644d72bc09/VC_303890932454_004-and-MO_612225165948_001-1657579473/staged_job_files/repository/vc/DimerContinuityC1__VC_303890932454_004/runner:596: DeprecationWarning: np.asscalar(a) is deprecated since NumPy v1.16, use a.item() instead nth[n], np.asscalar(val), yesno[is_continuous] /work2/08773/bwaters/stampede2/bwaters/job-f3fdde29-9b70-4660-a1e1-1cffc034afca-007-e2960af7-5bd2-4fe1-a0d3-3a644d72bc09/VC_303890932454_004-and-MO_612225165948_001-1657579473/staged_job_files/repository/vc/DimerContinuityC1__VC_303890932454_004/runner:596: DeprecationWarning: np.asscalar(a) is deprecated since NumPy v1.16, use a.item() instead nth[n], np.asscalar(val), yesno[is_continuous] /work2/08773/bwaters/stampede2/bwaters/job-f3fdde29-9b70-4660-a1e1-1cffc034afca-007-e2960af7-5bd2-4fe1-a0d3-3a644d72bc09/VC_303890932454_004-and-MO_612225165948_001-1657579473/staged_job_files/repository/vc/DimerContinuityC1__VC_303890932454_004/runner:677: DeprecationWarning: np.asscalar(a) is deprecated since NumPy v1.16, use a.item() instead e.append(np.asscalar(val)) /usr/local/lib/python3.8/dist-packages/ase/atoms.py:504: VisibleDeprecationWarning: Creating an ndarray from ragged nested sequences (which is a list-or-tuple of lists-or-tuples-or ndarrays with different lengths or shapes) is deprecated. If you meant to do this, you must specify 'dtype=object' when creating the ndarray. a = np.asarray(a) /work2/08773/bwaters/stampede2/bwaters/job-f3fdde29-9b70-4660-a1e1-1cffc034afca-007-e2960af7-5bd2-4fe1-a0d3-3a644d72bc09/VC_303890932454_004-and-MO_612225165948_001-1657579473/staged_job_files/repository/vc/DimerContinuityC1__VC_303890932454_004/runner:596: DeprecationWarning: np.asscalar(a) is deprecated since NumPy v1.16, use a.item() instead nth[n], np.asscalar(val), yesno[is_continuous] /work2/08773/bwaters/stampede2/bwaters/job-f3fdde29-9b70-4660-a1e1-1cffc034afca-007-e2960af7-5bd2-4fe1-a0d3-3a644d72bc09/VC_303890932454_004-and-MO_612225165948_001-1657579473/staged_job_files/repository/vc/DimerContinuityC1__VC_303890932454_004/runner:596: DeprecationWarning: np.asscalar(a) is deprecated since NumPy v1.16, use a.item() instead nth[n], np.asscalar(val), yesno[is_continuous] /work2/08773/bwaters/stampede2/bwaters/job-f3fdde29-9b70-4660-a1e1-1cffc034afca-007-e2960af7-5bd2-4fe1-a0d3-3a644d72bc09/VC_303890932454_004-and-MO_612225165948_001-1657579473/staged_job_files/repository/vc/DimerContinuityC1__VC_303890932454_004/runner:596: DeprecationWarning: np.asscalar(a) is deprecated since NumPy v1.16, use a.item() instead nth[n], np.asscalar(val), yesno[is_continuous] /work2/08773/bwaters/stampede2/bwaters/job-f3fdde29-9b70-4660-a1e1-1cffc034afca-007-e2960af7-5bd2-4fe1-a0d3-3a644d72bc09/VC_303890932454_004-and-MO_612225165948_001-1657579473/staged_job_files/repository/vc/DimerContinuityC1__VC_303890932454_004/runner:677: DeprecationWarning: np.asscalar(a) is deprecated since NumPy v1.16, use a.item() instead e.append(np.asscalar(val)) /usr/local/lib/python3.8/dist-packages/ase/atoms.py:504: VisibleDeprecationWarning: Creating an ndarray from ragged nested sequences (which is a list-or-tuple of lists-or-tuples-or ndarrays with different lengths or shapes) is deprecated. If you meant to do this, you must specify 'dtype=object' when creating the ndarray. a = np.asarray(a) /work2/08773/bwaters/stampede2/bwaters/job-f3fdde29-9b70-4660-a1e1-1cffc034afca-007-e2960af7-5bd2-4fe1-a0d3-3a644d72bc09/VC_303890932454_004-and-MO_612225165948_001-1657579473/staged_job_files/repository/vc/DimerContinuityC1__VC_303890932454_004/runner:596: DeprecationWarning: np.asscalar(a) is deprecated since NumPy v1.16, use a.item() instead nth[n], np.asscalar(val), yesno[is_continuous] /work2/08773/bwaters/stampede2/bwaters/job-f3fdde29-9b70-4660-a1e1-1cffc034afca-007-e2960af7-5bd2-4fe1-a0d3-3a644d72bc09/VC_303890932454_004-and-MO_612225165948_001-1657579473/staged_job_files/repository/vc/DimerContinuityC1__VC_303890932454_004/runner:596: DeprecationWarning: np.asscalar(a) is deprecated since NumPy v1.16, use a.item() instead nth[n], np.asscalar(val), yesno[is_continuous] /work2/08773/bwaters/stampede2/bwaters/job-f3fdde29-9b70-4660-a1e1-1cffc034afca-007-e2960af7-5bd2-4fe1-a0d3-3a644d72bc09/VC_303890932454_004-and-MO_612225165948_001-1657579473/staged_job_files/repository/vc/DimerContinuityC1__VC_303890932454_004/runner:596: DeprecationWarning: np.asscalar(a) is deprecated since NumPy v1.16, use a.item() instead nth[n], np.asscalar(val), yesno[is_continuous] /work2/08773/bwaters/stampede2/bwaters/job-f3fdde29-9b70-4660-a1e1-1cffc034afca-007-e2960af7-5bd2-4fe1-a0d3-3a644d72bc09/VC_303890932454_004-and-MO_612225165948_001-1657579473/staged_job_files/repository/vc/DimerContinuityC1__VC_303890932454_004/runner:677: DeprecationWarning: np.asscalar(a) is deprecated since NumPy v1.16, use a.item() instead e.append(np.asscalar(val)) /usr/local/lib/python3.8/dist-packages/ase/atoms.py:504: VisibleDeprecationWarning: Creating an ndarray from ragged nested sequences (which is a list-or-tuple of lists-or-tuples-or ndarrays with different lengths or shapes) is deprecated. If you meant to do this, you must specify 'dtype=object' when creating the ndarray. a = np.asarray(a) /work2/08773/bwaters/stampede2/bwaters/job-f3fdde29-9b70-4660-a1e1-1cffc034afca-007-e2960af7-5bd2-4fe1-a0d3-3a644d72bc09/VC_303890932454_004-and-MO_612225165948_001-1657579473/staged_job_files/repository/vc/DimerContinuityC1__VC_303890932454_004/runner:596: DeprecationWarning: np.asscalar(a) is deprecated since NumPy v1.16, use a.item() instead nth[n], np.asscalar(val), yesno[is_continuous] /work2/08773/bwaters/stampede2/bwaters/job-f3fdde29-9b70-4660-a1e1-1cffc034afca-007-e2960af7-5bd2-4fe1-a0d3-3a644d72bc09/VC_303890932454_004-and-MO_612225165948_001-1657579473/staged_job_files/repository/vc/DimerContinuityC1__VC_303890932454_004/runner:596: DeprecationWarning: np.asscalar(a) is deprecated since NumPy v1.16, use a.item() instead nth[n], np.asscalar(val), yesno[is_continuous] /work2/08773/bwaters/stampede2/bwaters/job-f3fdde29-9b70-4660-a1e1-1cffc034afca-007-e2960af7-5bd2-4fe1-a0d3-3a644d72bc09/VC_303890932454_004-and-MO_612225165948_001-1657579473/staged_job_files/repository/vc/DimerContinuityC1__VC_303890932454_004/runner:596: DeprecationWarning: np.asscalar(a) is deprecated since NumPy v1.16, use a.item() instead nth[n], np.asscalar(val), yesno[is_continuous] /work2/08773/bwaters/stampede2/bwaters/job-f3fdde29-9b70-4660-a1e1-1cffc034afca-007-e2960af7-5bd2-4fe1-a0d3-3a644d72bc09/VC_303890932454_004-and-MO_612225165948_001-1657579473/staged_job_files/repository/vc/DimerContinuityC1__VC_303890932454_004/runner:677: DeprecationWarning: np.asscalar(a) is deprecated since NumPy v1.16, use a.item() instead e.append(np.asscalar(val)) {"realtime":3419.97,"usertime":3418.03,"systime":22.28,"memmax":142216,"memavg":0}