/usr/local/lib/python3.8/dist-packages/ase/atoms.py:504: VisibleDeprecationWarning: Creating an ndarray from ragged nested sequences (which is a list-or-tuple of lists-or-tuples-or ndarrays with different lengths or shapes) is deprecated. If you meant to do this, you must specify 'dtype=object' when creating the ndarray. a = np.asarray(a) /work/07753/dskarls/stampede2/jobs/dskarls/job-fc444f11-7a66-46d8-8ffe-df39789c995f-007-93c00d49-96aa-451d-bdb7-8bace16098f3/VC_303890932454_004-and-MO_616482358807_001-1652903158/staged_job_files/repository/vc/DimerContinuityC1__VC_303890932454_004/runner:596: DeprecationWarning: np.asscalar(a) is deprecated since NumPy v1.16, use a.item() instead nth[n], np.asscalar(val), yesno[is_continuous] /work/07753/dskarls/stampede2/jobs/dskarls/job-fc444f11-7a66-46d8-8ffe-df39789c995f-007-93c00d49-96aa-451d-bdb7-8bace16098f3/VC_303890932454_004-and-MO_616482358807_001-1652903158/staged_job_files/repository/vc/DimerContinuityC1__VC_303890932454_004/runner:596: DeprecationWarning: np.asscalar(a) is deprecated since NumPy v1.16, use a.item() instead nth[n], np.asscalar(val), yesno[is_continuous] /work/07753/dskarls/stampede2/jobs/dskarls/job-fc444f11-7a66-46d8-8ffe-df39789c995f-007-93c00d49-96aa-451d-bdb7-8bace16098f3/VC_303890932454_004-and-MO_616482358807_001-1652903158/staged_job_files/repository/vc/DimerContinuityC1__VC_303890932454_004/runner:596: DeprecationWarning: np.asscalar(a) is deprecated since NumPy v1.16, use a.item() instead nth[n], np.asscalar(val), yesno[is_continuous] /work/07753/dskarls/stampede2/jobs/dskarls/job-fc444f11-7a66-46d8-8ffe-df39789c995f-007-93c00d49-96aa-451d-bdb7-8bace16098f3/VC_303890932454_004-and-MO_616482358807_001-1652903158/staged_job_files/repository/vc/DimerContinuityC1__VC_303890932454_004/runner:596: DeprecationWarning: np.asscalar(a) is deprecated since NumPy v1.16, use a.item() instead nth[n], np.asscalar(val), yesno[is_continuous] /work/07753/dskarls/stampede2/jobs/dskarls/job-fc444f11-7a66-46d8-8ffe-df39789c995f-007-93c00d49-96aa-451d-bdb7-8bace16098f3/VC_303890932454_004-and-MO_616482358807_001-1652903158/staged_job_files/repository/vc/DimerContinuityC1__VC_303890932454_004/runner:677: DeprecationWarning: np.asscalar(a) is deprecated since NumPy v1.16, use a.item() instead e.append(np.asscalar(val)) /usr/local/lib/python3.8/dist-packages/ase/atoms.py:504: VisibleDeprecationWarning: Creating an ndarray from ragged nested sequences (which is a list-or-tuple of lists-or-tuples-or ndarrays with different lengths or shapes) is deprecated. If you meant to do this, you must specify 'dtype=object' when creating the ndarray. a = np.asarray(a) /work/07753/dskarls/stampede2/jobs/dskarls/job-fc444f11-7a66-46d8-8ffe-df39789c995f-007-93c00d49-96aa-451d-bdb7-8bace16098f3/VC_303890932454_004-and-MO_616482358807_001-1652903158/staged_job_files/repository/vc/DimerContinuityC1__VC_303890932454_004/runner:596: DeprecationWarning: np.asscalar(a) is deprecated since NumPy v1.16, use a.item() instead nth[n], np.asscalar(val), yesno[is_continuous] /work/07753/dskarls/stampede2/jobs/dskarls/job-fc444f11-7a66-46d8-8ffe-df39789c995f-007-93c00d49-96aa-451d-bdb7-8bace16098f3/VC_303890932454_004-and-MO_616482358807_001-1652903158/staged_job_files/repository/vc/DimerContinuityC1__VC_303890932454_004/runner:596: DeprecationWarning: np.asscalar(a) is deprecated since NumPy v1.16, use a.item() instead nth[n], np.asscalar(val), yesno[is_continuous] /work/07753/dskarls/stampede2/jobs/dskarls/job-fc444f11-7a66-46d8-8ffe-df39789c995f-007-93c00d49-96aa-451d-bdb7-8bace16098f3/VC_303890932454_004-and-MO_616482358807_001-1652903158/staged_job_files/repository/vc/DimerContinuityC1__VC_303890932454_004/runner:596: DeprecationWarning: np.asscalar(a) is deprecated since NumPy v1.16, use a.item() instead nth[n], np.asscalar(val), yesno[is_continuous] /work/07753/dskarls/stampede2/jobs/dskarls/job-fc444f11-7a66-46d8-8ffe-df39789c995f-007-93c00d49-96aa-451d-bdb7-8bace16098f3/VC_303890932454_004-and-MO_616482358807_001-1652903158/staged_job_files/repository/vc/DimerContinuityC1__VC_303890932454_004/runner:677: DeprecationWarning: np.asscalar(a) is deprecated since NumPy v1.16, use a.item() instead e.append(np.asscalar(val)) /usr/local/lib/python3.8/dist-packages/ase/atoms.py:504: VisibleDeprecationWarning: Creating an ndarray from ragged nested sequences (which is a list-or-tuple of lists-or-tuples-or ndarrays with different lengths or shapes) is deprecated. If you meant to do this, you must specify 'dtype=object' when creating the ndarray. a = np.asarray(a) /work/07753/dskarls/stampede2/jobs/dskarls/job-fc444f11-7a66-46d8-8ffe-df39789c995f-007-93c00d49-96aa-451d-bdb7-8bace16098f3/VC_303890932454_004-and-MO_616482358807_001-1652903158/staged_job_files/repository/vc/DimerContinuityC1__VC_303890932454_004/runner:596: DeprecationWarning: np.asscalar(a) is deprecated since NumPy v1.16, use a.item() instead nth[n], np.asscalar(val), yesno[is_continuous] /work/07753/dskarls/stampede2/jobs/dskarls/job-fc444f11-7a66-46d8-8ffe-df39789c995f-007-93c00d49-96aa-451d-bdb7-8bace16098f3/VC_303890932454_004-and-MO_616482358807_001-1652903158/staged_job_files/repository/vc/DimerContinuityC1__VC_303890932454_004/runner:596: DeprecationWarning: np.asscalar(a) is deprecated since NumPy v1.16, use a.item() instead nth[n], np.asscalar(val), yesno[is_continuous] /work/07753/dskarls/stampede2/jobs/dskarls/job-fc444f11-7a66-46d8-8ffe-df39789c995f-007-93c00d49-96aa-451d-bdb7-8bace16098f3/VC_303890932454_004-and-MO_616482358807_001-1652903158/staged_job_files/repository/vc/DimerContinuityC1__VC_303890932454_004/runner:596: DeprecationWarning: np.asscalar(a) is deprecated since NumPy v1.16, use a.item() instead nth[n], np.asscalar(val), yesno[is_continuous] /work/07753/dskarls/stampede2/jobs/dskarls/job-fc444f11-7a66-46d8-8ffe-df39789c995f-007-93c00d49-96aa-451d-bdb7-8bace16098f3/VC_303890932454_004-and-MO_616482358807_001-1652903158/staged_job_files/repository/vc/DimerContinuityC1__VC_303890932454_004/runner:677: DeprecationWarning: np.asscalar(a) is deprecated since NumPy v1.16, use a.item() instead e.append(np.asscalar(val)) {"realtime":461.53,"usertime":465.20,"systime":20.18,"memmax":120136,"memavg":0}