/usr/local/lib/python3.8/dist-packages/ase/atoms.py:504: VisibleDeprecationWarning: Creating an ndarray from ragged nested sequences (which is a list-or-tuple of lists-or-tuples-or ndarrays with different lengths or shapes) is deprecated. If you meant to do this, you must specify 'dtype=object' when creating the ndarray.
  a = np.asarray(a)
/work2/08773/bwaters/stampede2/bwaters/job-9a210115-655e-4eb7-be1c-e0be87182579-007-3d35b1ff-6e7e-4e7f-8be4-014e3c9b8a9e/VC_303890932454_004-and-MO_680820064987_000-1659564402/staged_job_files/repository/vc/DimerContinuityC1__VC_303890932454_004/runner:596: DeprecationWarning: np.asscalar(a) is deprecated since NumPy v1.16, use a.item() instead
  nth[n], np.asscalar(val), yesno[is_continuous]
/work2/08773/bwaters/stampede2/bwaters/job-9a210115-655e-4eb7-be1c-e0be87182579-007-3d35b1ff-6e7e-4e7f-8be4-014e3c9b8a9e/VC_303890932454_004-and-MO_680820064987_000-1659564402/staged_job_files/repository/vc/DimerContinuityC1__VC_303890932454_004/runner:596: DeprecationWarning: np.asscalar(a) is deprecated since NumPy v1.16, use a.item() instead
  nth[n], np.asscalar(val), yesno[is_continuous]
/work2/08773/bwaters/stampede2/bwaters/job-9a210115-655e-4eb7-be1c-e0be87182579-007-3d35b1ff-6e7e-4e7f-8be4-014e3c9b8a9e/VC_303890932454_004-and-MO_680820064987_000-1659564402/staged_job_files/repository/vc/DimerContinuityC1__VC_303890932454_004/runner:596: DeprecationWarning: np.asscalar(a) is deprecated since NumPy v1.16, use a.item() instead
  nth[n], np.asscalar(val), yesno[is_continuous]
/work2/08773/bwaters/stampede2/bwaters/job-9a210115-655e-4eb7-be1c-e0be87182579-007-3d35b1ff-6e7e-4e7f-8be4-014e3c9b8a9e/VC_303890932454_004-and-MO_680820064987_000-1659564402/staged_job_files/repository/vc/DimerContinuityC1__VC_303890932454_004/runner:596: DeprecationWarning: np.asscalar(a) is deprecated since NumPy v1.16, use a.item() instead
  nth[n], np.asscalar(val), yesno[is_continuous]
/work2/08773/bwaters/stampede2/bwaters/job-9a210115-655e-4eb7-be1c-e0be87182579-007-3d35b1ff-6e7e-4e7f-8be4-014e3c9b8a9e/VC_303890932454_004-and-MO_680820064987_000-1659564402/staged_job_files/repository/vc/DimerContinuityC1__VC_303890932454_004/runner:677: DeprecationWarning: np.asscalar(a) is deprecated since NumPy v1.16, use a.item() instead
  e.append(np.asscalar(val))
/usr/local/lib/python3.8/dist-packages/ase/atoms.py:504: VisibleDeprecationWarning: Creating an ndarray from ragged nested sequences (which is a list-or-tuple of lists-or-tuples-or ndarrays with different lengths or shapes) is deprecated. If you meant to do this, you must specify 'dtype=object' when creating the ndarray.
  a = np.asarray(a)
/work2/08773/bwaters/stampede2/bwaters/job-9a210115-655e-4eb7-be1c-e0be87182579-007-3d35b1ff-6e7e-4e7f-8be4-014e3c9b8a9e/VC_303890932454_004-and-MO_680820064987_000-1659564402/staged_job_files/repository/vc/DimerContinuityC1__VC_303890932454_004/runner:596: DeprecationWarning: np.asscalar(a) is deprecated since NumPy v1.16, use a.item() instead
  nth[n], np.asscalar(val), yesno[is_continuous]
/work2/08773/bwaters/stampede2/bwaters/job-9a210115-655e-4eb7-be1c-e0be87182579-007-3d35b1ff-6e7e-4e7f-8be4-014e3c9b8a9e/VC_303890932454_004-and-MO_680820064987_000-1659564402/staged_job_files/repository/vc/DimerContinuityC1__VC_303890932454_004/runner:596: DeprecationWarning: np.asscalar(a) is deprecated since NumPy v1.16, use a.item() instead
  nth[n], np.asscalar(val), yesno[is_continuous]
/work2/08773/bwaters/stampede2/bwaters/job-9a210115-655e-4eb7-be1c-e0be87182579-007-3d35b1ff-6e7e-4e7f-8be4-014e3c9b8a9e/VC_303890932454_004-and-MO_680820064987_000-1659564402/staged_job_files/repository/vc/DimerContinuityC1__VC_303890932454_004/runner:596: DeprecationWarning: np.asscalar(a) is deprecated since NumPy v1.16, use a.item() instead
  nth[n], np.asscalar(val), yesno[is_continuous]
/work2/08773/bwaters/stampede2/bwaters/job-9a210115-655e-4eb7-be1c-e0be87182579-007-3d35b1ff-6e7e-4e7f-8be4-014e3c9b8a9e/VC_303890932454_004-and-MO_680820064987_000-1659564402/staged_job_files/repository/vc/DimerContinuityC1__VC_303890932454_004/runner:677: DeprecationWarning: np.asscalar(a) is deprecated since NumPy v1.16, use a.item() instead
  e.append(np.asscalar(val))
/usr/local/lib/python3.8/dist-packages/ase/atoms.py:504: VisibleDeprecationWarning: Creating an ndarray from ragged nested sequences (which is a list-or-tuple of lists-or-tuples-or ndarrays with different lengths or shapes) is deprecated. If you meant to do this, you must specify 'dtype=object' when creating the ndarray.
  a = np.asarray(a)
/work2/08773/bwaters/stampede2/bwaters/job-9a210115-655e-4eb7-be1c-e0be87182579-007-3d35b1ff-6e7e-4e7f-8be4-014e3c9b8a9e/VC_303890932454_004-and-MO_680820064987_000-1659564402/staged_job_files/repository/vc/DimerContinuityC1__VC_303890932454_004/runner:596: DeprecationWarning: np.asscalar(a) is deprecated since NumPy v1.16, use a.item() instead
  nth[n], np.asscalar(val), yesno[is_continuous]
/work2/08773/bwaters/stampede2/bwaters/job-9a210115-655e-4eb7-be1c-e0be87182579-007-3d35b1ff-6e7e-4e7f-8be4-014e3c9b8a9e/VC_303890932454_004-and-MO_680820064987_000-1659564402/staged_job_files/repository/vc/DimerContinuityC1__VC_303890932454_004/runner:596: DeprecationWarning: np.asscalar(a) is deprecated since NumPy v1.16, use a.item() instead
  nth[n], np.asscalar(val), yesno[is_continuous]
/work2/08773/bwaters/stampede2/bwaters/job-9a210115-655e-4eb7-be1c-e0be87182579-007-3d35b1ff-6e7e-4e7f-8be4-014e3c9b8a9e/VC_303890932454_004-and-MO_680820064987_000-1659564402/staged_job_files/repository/vc/DimerContinuityC1__VC_303890932454_004/runner:596: DeprecationWarning: np.asscalar(a) is deprecated since NumPy v1.16, use a.item() instead
  nth[n], np.asscalar(val), yesno[is_continuous]
/work2/08773/bwaters/stampede2/bwaters/job-9a210115-655e-4eb7-be1c-e0be87182579-007-3d35b1ff-6e7e-4e7f-8be4-014e3c9b8a9e/VC_303890932454_004-and-MO_680820064987_000-1659564402/staged_job_files/repository/vc/DimerContinuityC1__VC_303890932454_004/runner:677: DeprecationWarning: np.asscalar(a) is deprecated since NumPy v1.16, use a.item() instead
  e.append(np.asscalar(val))

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