/usr/local/lib/python3.8/dist-packages/ase/atoms.py:504: VisibleDeprecationWarning: Creating an ndarray from ragged nested sequences (which is a list-or-tuple of lists-or-tuples-or ndarrays with different lengths or shapes) is deprecated. If you meant to do this, you must specify 'dtype=object' when creating the ndarray. a = np.asarray(a) /work2/08773/bwaters/stampede2/bwaters/job-6325b822-4adc-4bb5-8f27-7fd8154ba17b-007-cdb9861b-36fb-4ac0-8169-67a6a73b42bf/VC_303890932454_004-and-MO_715003088863_000-1659562139/staged_job_files/repository/vc/DimerContinuityC1__VC_303890932454_004/runner:596: DeprecationWarning: np.asscalar(a) is deprecated since NumPy v1.16, use a.item() instead nth[n], np.asscalar(val), yesno[is_continuous] /work2/08773/bwaters/stampede2/bwaters/job-6325b822-4adc-4bb5-8f27-7fd8154ba17b-007-cdb9861b-36fb-4ac0-8169-67a6a73b42bf/VC_303890932454_004-and-MO_715003088863_000-1659562139/staged_job_files/repository/vc/DimerContinuityC1__VC_303890932454_004/runner:596: DeprecationWarning: np.asscalar(a) is deprecated since NumPy v1.16, use a.item() instead nth[n], np.asscalar(val), yesno[is_continuous] /work2/08773/bwaters/stampede2/bwaters/job-6325b822-4adc-4bb5-8f27-7fd8154ba17b-007-cdb9861b-36fb-4ac0-8169-67a6a73b42bf/VC_303890932454_004-and-MO_715003088863_000-1659562139/staged_job_files/repository/vc/DimerContinuityC1__VC_303890932454_004/runner:596: DeprecationWarning: np.asscalar(a) is deprecated since NumPy v1.16, use a.item() instead nth[n], np.asscalar(val), yesno[is_continuous] /work2/08773/bwaters/stampede2/bwaters/job-6325b822-4adc-4bb5-8f27-7fd8154ba17b-007-cdb9861b-36fb-4ac0-8169-67a6a73b42bf/VC_303890932454_004-and-MO_715003088863_000-1659562139/staged_job_files/repository/vc/DimerContinuityC1__VC_303890932454_004/runner:596: DeprecationWarning: np.asscalar(a) is deprecated since NumPy v1.16, use a.item() instead nth[n], np.asscalar(val), yesno[is_continuous] /work2/08773/bwaters/stampede2/bwaters/job-6325b822-4adc-4bb5-8f27-7fd8154ba17b-007-cdb9861b-36fb-4ac0-8169-67a6a73b42bf/VC_303890932454_004-and-MO_715003088863_000-1659562139/staged_job_files/repository/vc/DimerContinuityC1__VC_303890932454_004/runner:677: DeprecationWarning: np.asscalar(a) is deprecated since NumPy v1.16, use a.item() instead e.append(np.asscalar(val)) /usr/local/lib/python3.8/dist-packages/ase/atoms.py:504: VisibleDeprecationWarning: Creating an ndarray from ragged nested sequences (which is a list-or-tuple of lists-or-tuples-or ndarrays with different lengths or shapes) is deprecated. If you meant to do this, you must specify 'dtype=object' when creating the ndarray. a = np.asarray(a) /work2/08773/bwaters/stampede2/bwaters/job-6325b822-4adc-4bb5-8f27-7fd8154ba17b-007-cdb9861b-36fb-4ac0-8169-67a6a73b42bf/VC_303890932454_004-and-MO_715003088863_000-1659562139/staged_job_files/repository/vc/DimerContinuityC1__VC_303890932454_004/runner:596: DeprecationWarning: np.asscalar(a) is deprecated since NumPy v1.16, use a.item() instead nth[n], np.asscalar(val), yesno[is_continuous] /work2/08773/bwaters/stampede2/bwaters/job-6325b822-4adc-4bb5-8f27-7fd8154ba17b-007-cdb9861b-36fb-4ac0-8169-67a6a73b42bf/VC_303890932454_004-and-MO_715003088863_000-1659562139/staged_job_files/repository/vc/DimerContinuityC1__VC_303890932454_004/runner:596: DeprecationWarning: np.asscalar(a) is deprecated since NumPy v1.16, use a.item() instead nth[n], np.asscalar(val), yesno[is_continuous] /work2/08773/bwaters/stampede2/bwaters/job-6325b822-4adc-4bb5-8f27-7fd8154ba17b-007-cdb9861b-36fb-4ac0-8169-67a6a73b42bf/VC_303890932454_004-and-MO_715003088863_000-1659562139/staged_job_files/repository/vc/DimerContinuityC1__VC_303890932454_004/runner:596: DeprecationWarning: np.asscalar(a) is deprecated since NumPy v1.16, use a.item() instead nth[n], np.asscalar(val), yesno[is_continuous] /work2/08773/bwaters/stampede2/bwaters/job-6325b822-4adc-4bb5-8f27-7fd8154ba17b-007-cdb9861b-36fb-4ac0-8169-67a6a73b42bf/VC_303890932454_004-and-MO_715003088863_000-1659562139/staged_job_files/repository/vc/DimerContinuityC1__VC_303890932454_004/runner:677: DeprecationWarning: np.asscalar(a) is deprecated since NumPy v1.16, use a.item() instead e.append(np.asscalar(val)) /usr/local/lib/python3.8/dist-packages/ase/atoms.py:504: VisibleDeprecationWarning: Creating an ndarray from ragged nested sequences (which is a list-or-tuple of lists-or-tuples-or ndarrays with different lengths or shapes) is deprecated. If you meant to do this, you must specify 'dtype=object' when creating the ndarray. a = np.asarray(a) /work2/08773/bwaters/stampede2/bwaters/job-6325b822-4adc-4bb5-8f27-7fd8154ba17b-007-cdb9861b-36fb-4ac0-8169-67a6a73b42bf/VC_303890932454_004-and-MO_715003088863_000-1659562139/staged_job_files/repository/vc/DimerContinuityC1__VC_303890932454_004/runner:596: DeprecationWarning: np.asscalar(a) is deprecated since NumPy v1.16, use a.item() instead nth[n], np.asscalar(val), yesno[is_continuous] /work2/08773/bwaters/stampede2/bwaters/job-6325b822-4adc-4bb5-8f27-7fd8154ba17b-007-cdb9861b-36fb-4ac0-8169-67a6a73b42bf/VC_303890932454_004-and-MO_715003088863_000-1659562139/staged_job_files/repository/vc/DimerContinuityC1__VC_303890932454_004/runner:596: DeprecationWarning: np.asscalar(a) is deprecated since NumPy v1.16, use a.item() instead nth[n], np.asscalar(val), yesno[is_continuous] /work2/08773/bwaters/stampede2/bwaters/job-6325b822-4adc-4bb5-8f27-7fd8154ba17b-007-cdb9861b-36fb-4ac0-8169-67a6a73b42bf/VC_303890932454_004-and-MO_715003088863_000-1659562139/staged_job_files/repository/vc/DimerContinuityC1__VC_303890932454_004/runner:596: DeprecationWarning: np.asscalar(a) is deprecated since NumPy v1.16, use a.item() instead nth[n], np.asscalar(val), yesno[is_continuous] /work2/08773/bwaters/stampede2/bwaters/job-6325b822-4adc-4bb5-8f27-7fd8154ba17b-007-cdb9861b-36fb-4ac0-8169-67a6a73b42bf/VC_303890932454_004-and-MO_715003088863_000-1659562139/staged_job_files/repository/vc/DimerContinuityC1__VC_303890932454_004/runner:677: DeprecationWarning: np.asscalar(a) is deprecated since NumPy v1.16, use a.item() instead e.append(np.asscalar(val)) /usr/local/lib/python3.8/dist-packages/ase/atoms.py:504: VisibleDeprecationWarning: Creating an ndarray from ragged nested sequences (which is a list-or-tuple of lists-or-tuples-or ndarrays with different lengths or shapes) is deprecated. If you meant to do this, you must specify 'dtype=object' when creating the ndarray. a = np.asarray(a) /work2/08773/bwaters/stampede2/bwaters/job-6325b822-4adc-4bb5-8f27-7fd8154ba17b-007-cdb9861b-36fb-4ac0-8169-67a6a73b42bf/VC_303890932454_004-and-MO_715003088863_000-1659562139/staged_job_files/repository/vc/DimerContinuityC1__VC_303890932454_004/runner:596: DeprecationWarning: np.asscalar(a) is deprecated since NumPy v1.16, use a.item() instead nth[n], np.asscalar(val), yesno[is_continuous] /work2/08773/bwaters/stampede2/bwaters/job-6325b822-4adc-4bb5-8f27-7fd8154ba17b-007-cdb9861b-36fb-4ac0-8169-67a6a73b42bf/VC_303890932454_004-and-MO_715003088863_000-1659562139/staged_job_files/repository/vc/DimerContinuityC1__VC_303890932454_004/runner:596: DeprecationWarning: np.asscalar(a) is deprecated since NumPy v1.16, use a.item() instead nth[n], np.asscalar(val), yesno[is_continuous] /work2/08773/bwaters/stampede2/bwaters/job-6325b822-4adc-4bb5-8f27-7fd8154ba17b-007-cdb9861b-36fb-4ac0-8169-67a6a73b42bf/VC_303890932454_004-and-MO_715003088863_000-1659562139/staged_job_files/repository/vc/DimerContinuityC1__VC_303890932454_004/runner:596: DeprecationWarning: np.asscalar(a) is deprecated since NumPy v1.16, use a.item() instead nth[n], np.asscalar(val), yesno[is_continuous] /work2/08773/bwaters/stampede2/bwaters/job-6325b822-4adc-4bb5-8f27-7fd8154ba17b-007-cdb9861b-36fb-4ac0-8169-67a6a73b42bf/VC_303890932454_004-and-MO_715003088863_000-1659562139/staged_job_files/repository/vc/DimerContinuityC1__VC_303890932454_004/runner:677: DeprecationWarning: np.asscalar(a) is deprecated since NumPy v1.16, use a.item() instead e.append(np.asscalar(val)) /usr/local/lib/python3.8/dist-packages/ase/atoms.py:504: VisibleDeprecationWarning: Creating an ndarray from ragged nested sequences (which is a list-or-tuple of lists-or-tuples-or ndarrays with different lengths or shapes) is deprecated. If you meant to do this, you must specify 'dtype=object' when creating the ndarray. a = np.asarray(a) /work2/08773/bwaters/stampede2/bwaters/job-6325b822-4adc-4bb5-8f27-7fd8154ba17b-007-cdb9861b-36fb-4ac0-8169-67a6a73b42bf/VC_303890932454_004-and-MO_715003088863_000-1659562139/staged_job_files/repository/vc/DimerContinuityC1__VC_303890932454_004/runner:596: DeprecationWarning: np.asscalar(a) is deprecated since NumPy v1.16, use a.item() instead nth[n], np.asscalar(val), yesno[is_continuous] /work2/08773/bwaters/stampede2/bwaters/job-6325b822-4adc-4bb5-8f27-7fd8154ba17b-007-cdb9861b-36fb-4ac0-8169-67a6a73b42bf/VC_303890932454_004-and-MO_715003088863_000-1659562139/staged_job_files/repository/vc/DimerContinuityC1__VC_303890932454_004/runner:596: DeprecationWarning: np.asscalar(a) is deprecated since NumPy v1.16, use a.item() instead nth[n], np.asscalar(val), yesno[is_continuous] /work2/08773/bwaters/stampede2/bwaters/job-6325b822-4adc-4bb5-8f27-7fd8154ba17b-007-cdb9861b-36fb-4ac0-8169-67a6a73b42bf/VC_303890932454_004-and-MO_715003088863_000-1659562139/staged_job_files/repository/vc/DimerContinuityC1__VC_303890932454_004/runner:596: DeprecationWarning: np.asscalar(a) is deprecated since NumPy v1.16, use a.item() instead nth[n], np.asscalar(val), yesno[is_continuous] /work2/08773/bwaters/stampede2/bwaters/job-6325b822-4adc-4bb5-8f27-7fd8154ba17b-007-cdb9861b-36fb-4ac0-8169-67a6a73b42bf/VC_303890932454_004-and-MO_715003088863_000-1659562139/staged_job_files/repository/vc/DimerContinuityC1__VC_303890932454_004/runner:677: DeprecationWarning: np.asscalar(a) is deprecated since NumPy v1.16, use a.item() instead e.append(np.asscalar(val)) /usr/local/lib/python3.8/dist-packages/ase/atoms.py:504: VisibleDeprecationWarning: Creating an ndarray from ragged nested sequences (which is a list-or-tuple of lists-or-tuples-or ndarrays with different lengths or shapes) is deprecated. If you meant to do this, you must specify 'dtype=object' when creating the ndarray. a = np.asarray(a) /work2/08773/bwaters/stampede2/bwaters/job-6325b822-4adc-4bb5-8f27-7fd8154ba17b-007-cdb9861b-36fb-4ac0-8169-67a6a73b42bf/VC_303890932454_004-and-MO_715003088863_000-1659562139/staged_job_files/repository/vc/DimerContinuityC1__VC_303890932454_004/runner:596: DeprecationWarning: np.asscalar(a) is deprecated since NumPy v1.16, use a.item() instead nth[n], np.asscalar(val), yesno[is_continuous] /work2/08773/bwaters/stampede2/bwaters/job-6325b822-4adc-4bb5-8f27-7fd8154ba17b-007-cdb9861b-36fb-4ac0-8169-67a6a73b42bf/VC_303890932454_004-and-MO_715003088863_000-1659562139/staged_job_files/repository/vc/DimerContinuityC1__VC_303890932454_004/runner:596: DeprecationWarning: np.asscalar(a) is deprecated since NumPy v1.16, use a.item() instead nth[n], np.asscalar(val), yesno[is_continuous] /work2/08773/bwaters/stampede2/bwaters/job-6325b822-4adc-4bb5-8f27-7fd8154ba17b-007-cdb9861b-36fb-4ac0-8169-67a6a73b42bf/VC_303890932454_004-and-MO_715003088863_000-1659562139/staged_job_files/repository/vc/DimerContinuityC1__VC_303890932454_004/runner:596: DeprecationWarning: np.asscalar(a) is deprecated since NumPy v1.16, use a.item() instead nth[n], np.asscalar(val), yesno[is_continuous] /work2/08773/bwaters/stampede2/bwaters/job-6325b822-4adc-4bb5-8f27-7fd8154ba17b-007-cdb9861b-36fb-4ac0-8169-67a6a73b42bf/VC_303890932454_004-and-MO_715003088863_000-1659562139/staged_job_files/repository/vc/DimerContinuityC1__VC_303890932454_004/runner:677: DeprecationWarning: np.asscalar(a) is deprecated since NumPy v1.16, use a.item() instead e.append(np.asscalar(val)) {"realtime":596.89,"usertime":597.63,"systime":22.75,"memmax":257524,"memavg":0}