/usr/local/lib/python3.8/dist-packages/ase/atoms.py:504: VisibleDeprecationWarning: Creating an ndarray from ragged nested sequences (which is a list-or-tuple of lists-or-tuples-or ndarrays with different lengths or shapes) is deprecated. If you meant to do this, you must specify 'dtype=object' when creating the ndarray. a = np.asarray(a) /work2/08773/bwaters/stampede2/bwaters/job-acba795c-65ee-49c5-acea-967c32e1a118-007-6073ede6-ce75-4360-a783-dc981b242ea2/VC_303890932454_004-and-MO_802302521552_000-1658432652/staged_job_files/repository/vc/DimerContinuityC1__VC_303890932454_004/runner:596: DeprecationWarning: np.asscalar(a) is deprecated since NumPy v1.16, use a.item() instead nth[n], np.asscalar(val), yesno[is_continuous] /work2/08773/bwaters/stampede2/bwaters/job-acba795c-65ee-49c5-acea-967c32e1a118-007-6073ede6-ce75-4360-a783-dc981b242ea2/VC_303890932454_004-and-MO_802302521552_000-1658432652/staged_job_files/repository/vc/DimerContinuityC1__VC_303890932454_004/runner:596: DeprecationWarning: np.asscalar(a) is deprecated since NumPy v1.16, use a.item() instead nth[n], np.asscalar(val), yesno[is_continuous] /work2/08773/bwaters/stampede2/bwaters/job-acba795c-65ee-49c5-acea-967c32e1a118-007-6073ede6-ce75-4360-a783-dc981b242ea2/VC_303890932454_004-and-MO_802302521552_000-1658432652/staged_job_files/repository/vc/DimerContinuityC1__VC_303890932454_004/runner:596: DeprecationWarning: np.asscalar(a) is deprecated since NumPy v1.16, use a.item() instead nth[n], np.asscalar(val), yesno[is_continuous] /work2/08773/bwaters/stampede2/bwaters/job-acba795c-65ee-49c5-acea-967c32e1a118-007-6073ede6-ce75-4360-a783-dc981b242ea2/VC_303890932454_004-and-MO_802302521552_000-1658432652/staged_job_files/repository/vc/DimerContinuityC1__VC_303890932454_004/runner:596: DeprecationWarning: np.asscalar(a) is deprecated since NumPy v1.16, use a.item() instead nth[n], np.asscalar(val), yesno[is_continuous] /work2/08773/bwaters/stampede2/bwaters/job-acba795c-65ee-49c5-acea-967c32e1a118-007-6073ede6-ce75-4360-a783-dc981b242ea2/VC_303890932454_004-and-MO_802302521552_000-1658432652/staged_job_files/repository/vc/DimerContinuityC1__VC_303890932454_004/runner:677: DeprecationWarning: np.asscalar(a) is deprecated since NumPy v1.16, use a.item() instead e.append(np.asscalar(val)) {"realtime":101.62,"usertime":106.62,"systime":19.07,"memmax":94040,"memavg":0}