/usr/local/lib/python3.8/dist-packages/ase/atoms.py:504: VisibleDeprecationWarning: Creating an ndarray from ragged nested sequences (which is a list-or-tuple of lists-or-tuples-or ndarrays with different lengths or shapes) is deprecated. If you meant to do this, you must specify 'dtype=object' when creating the ndarray. a = np.asarray(a) /scratch.hyperion/kim-jobs/jobs/dskarls/job-5991eb2e-49b0-434c-b2df-5ac3586e717e-007-b21d8cd0-a51c-4c70-92f1-93c5778334ca/VC_303890932454_004-and-MO_883726743759_001-1640655083/staged_job_files/repository/vc/DimerContinuityC1__VC_303890932454_004/runner:596: DeprecationWarning: np.asscalar(a) is deprecated since NumPy v1.16, use a.item() instead nth[n], np.asscalar(val), yesno[is_continuous] /scratch.hyperion/kim-jobs/jobs/dskarls/job-5991eb2e-49b0-434c-b2df-5ac3586e717e-007-b21d8cd0-a51c-4c70-92f1-93c5778334ca/VC_303890932454_004-and-MO_883726743759_001-1640655083/staged_job_files/repository/vc/DimerContinuityC1__VC_303890932454_004/runner:596: DeprecationWarning: np.asscalar(a) is deprecated since NumPy v1.16, use a.item() instead nth[n], np.asscalar(val), yesno[is_continuous] /scratch.hyperion/kim-jobs/jobs/dskarls/job-5991eb2e-49b0-434c-b2df-5ac3586e717e-007-b21d8cd0-a51c-4c70-92f1-93c5778334ca/VC_303890932454_004-and-MO_883726743759_001-1640655083/staged_job_files/repository/vc/DimerContinuityC1__VC_303890932454_004/runner:596: DeprecationWarning: np.asscalar(a) is deprecated since NumPy v1.16, use a.item() instead nth[n], np.asscalar(val), yesno[is_continuous] /scratch.hyperion/kim-jobs/jobs/dskarls/job-5991eb2e-49b0-434c-b2df-5ac3586e717e-007-b21d8cd0-a51c-4c70-92f1-93c5778334ca/VC_303890932454_004-and-MO_883726743759_001-1640655083/staged_job_files/repository/vc/DimerContinuityC1__VC_303890932454_004/runner:596: DeprecationWarning: np.asscalar(a) is deprecated since NumPy v1.16, use a.item() instead nth[n], np.asscalar(val), yesno[is_continuous] /scratch.hyperion/kim-jobs/jobs/dskarls/job-5991eb2e-49b0-434c-b2df-5ac3586e717e-007-b21d8cd0-a51c-4c70-92f1-93c5778334ca/VC_303890932454_004-and-MO_883726743759_001-1640655083/staged_job_files/repository/vc/DimerContinuityC1__VC_303890932454_004/runner:677: DeprecationWarning: np.asscalar(a) is deprecated since NumPy v1.16, use a.item() instead e.append(np.asscalar(val)) {"realtime":7.63,"usertime":6.75,"systime":1.76,"memmax":60156,"memavg":0}