/usr/local/lib/python3.8/dist-packages/ase/atoms.py:504: VisibleDeprecationWarning: Creating an ndarray from ragged nested sequences (which is a list-or-tuple of lists-or-tuples-or ndarrays with different lengths or shapes) is deprecated. If you meant to do this, you must specify 'dtype=object' when creating the ndarray. a = np.asarray(a) /scratch.hyperion/kim-jobs/jobs/bwaters/job-7677e9e4-5765-4bbe-a7a3-f7046eddd1ad-007-16cc3d6e-1d52-48bd-8f51-f46a035f641d/VC_303890932454_004-and-MO_992900971352_000-1659736432/staged_job_files/repository/vc/DimerContinuityC1__VC_303890932454_004/runner:596: DeprecationWarning: np.asscalar(a) is deprecated since NumPy v1.16, use a.item() instead nth[n], np.asscalar(val), yesno[is_continuous] /scratch.hyperion/kim-jobs/jobs/bwaters/job-7677e9e4-5765-4bbe-a7a3-f7046eddd1ad-007-16cc3d6e-1d52-48bd-8f51-f46a035f641d/VC_303890932454_004-and-MO_992900971352_000-1659736432/staged_job_files/repository/vc/DimerContinuityC1__VC_303890932454_004/runner:596: DeprecationWarning: np.asscalar(a) is deprecated since NumPy v1.16, use a.item() instead nth[n], np.asscalar(val), yesno[is_continuous] /scratch.hyperion/kim-jobs/jobs/bwaters/job-7677e9e4-5765-4bbe-a7a3-f7046eddd1ad-007-16cc3d6e-1d52-48bd-8f51-f46a035f641d/VC_303890932454_004-and-MO_992900971352_000-1659736432/staged_job_files/repository/vc/DimerContinuityC1__VC_303890932454_004/runner:596: DeprecationWarning: np.asscalar(a) is deprecated since NumPy v1.16, use a.item() instead nth[n], np.asscalar(val), yesno[is_continuous] /scratch.hyperion/kim-jobs/jobs/bwaters/job-7677e9e4-5765-4bbe-a7a3-f7046eddd1ad-007-16cc3d6e-1d52-48bd-8f51-f46a035f641d/VC_303890932454_004-and-MO_992900971352_000-1659736432/staged_job_files/repository/vc/DimerContinuityC1__VC_303890932454_004/runner:596: DeprecationWarning: np.asscalar(a) is deprecated since NumPy v1.16, use a.item() instead nth[n], np.asscalar(val), yesno[is_continuous] /scratch.hyperion/kim-jobs/jobs/bwaters/job-7677e9e4-5765-4bbe-a7a3-f7046eddd1ad-007-16cc3d6e-1d52-48bd-8f51-f46a035f641d/VC_303890932454_004-and-MO_992900971352_000-1659736432/staged_job_files/repository/vc/DimerContinuityC1__VC_303890932454_004/runner:677: DeprecationWarning: np.asscalar(a) is deprecated since NumPy v1.16, use a.item() instead e.append(np.asscalar(val)) /usr/local/lib/python3.8/dist-packages/ase/atoms.py:504: VisibleDeprecationWarning: Creating an ndarray from ragged nested sequences (which is a list-or-tuple of lists-or-tuples-or ndarrays with different lengths or shapes) is deprecated. If you meant to do this, you must specify 'dtype=object' when creating the ndarray. a = np.asarray(a) /scratch.hyperion/kim-jobs/jobs/bwaters/job-7677e9e4-5765-4bbe-a7a3-f7046eddd1ad-007-16cc3d6e-1d52-48bd-8f51-f46a035f641d/VC_303890932454_004-and-MO_992900971352_000-1659736432/staged_job_files/repository/vc/DimerContinuityC1__VC_303890932454_004/runner:596: DeprecationWarning: np.asscalar(a) is deprecated since NumPy v1.16, use a.item() instead nth[n], np.asscalar(val), yesno[is_continuous] /scratch.hyperion/kim-jobs/jobs/bwaters/job-7677e9e4-5765-4bbe-a7a3-f7046eddd1ad-007-16cc3d6e-1d52-48bd-8f51-f46a035f641d/VC_303890932454_004-and-MO_992900971352_000-1659736432/staged_job_files/repository/vc/DimerContinuityC1__VC_303890932454_004/runner:596: DeprecationWarning: np.asscalar(a) is deprecated since NumPy v1.16, use a.item() instead nth[n], np.asscalar(val), yesno[is_continuous] /scratch.hyperion/kim-jobs/jobs/bwaters/job-7677e9e4-5765-4bbe-a7a3-f7046eddd1ad-007-16cc3d6e-1d52-48bd-8f51-f46a035f641d/VC_303890932454_004-and-MO_992900971352_000-1659736432/staged_job_files/repository/vc/DimerContinuityC1__VC_303890932454_004/runner:596: DeprecationWarning: np.asscalar(a) is deprecated since NumPy v1.16, use a.item() instead nth[n], np.asscalar(val), yesno[is_continuous] /scratch.hyperion/kim-jobs/jobs/bwaters/job-7677e9e4-5765-4bbe-a7a3-f7046eddd1ad-007-16cc3d6e-1d52-48bd-8f51-f46a035f641d/VC_303890932454_004-and-MO_992900971352_000-1659736432/staged_job_files/repository/vc/DimerContinuityC1__VC_303890932454_004/runner:677: DeprecationWarning: np.asscalar(a) is deprecated since NumPy v1.16, use a.item() instead e.append(np.asscalar(val)) /usr/local/lib/python3.8/dist-packages/ase/atoms.py:504: VisibleDeprecationWarning: Creating an ndarray from ragged nested sequences (which is a list-or-tuple of lists-or-tuples-or ndarrays with different lengths or shapes) is deprecated. If you meant to do this, you must specify 'dtype=object' when creating the ndarray. a = np.asarray(a) /scratch.hyperion/kim-jobs/jobs/bwaters/job-7677e9e4-5765-4bbe-a7a3-f7046eddd1ad-007-16cc3d6e-1d52-48bd-8f51-f46a035f641d/VC_303890932454_004-and-MO_992900971352_000-1659736432/staged_job_files/repository/vc/DimerContinuityC1__VC_303890932454_004/runner:596: DeprecationWarning: np.asscalar(a) is deprecated since NumPy v1.16, use a.item() instead nth[n], np.asscalar(val), yesno[is_continuous] /scratch.hyperion/kim-jobs/jobs/bwaters/job-7677e9e4-5765-4bbe-a7a3-f7046eddd1ad-007-16cc3d6e-1d52-48bd-8f51-f46a035f641d/VC_303890932454_004-and-MO_992900971352_000-1659736432/staged_job_files/repository/vc/DimerContinuityC1__VC_303890932454_004/runner:596: DeprecationWarning: np.asscalar(a) is deprecated since NumPy v1.16, use a.item() instead nth[n], np.asscalar(val), yesno[is_continuous] /scratch.hyperion/kim-jobs/jobs/bwaters/job-7677e9e4-5765-4bbe-a7a3-f7046eddd1ad-007-16cc3d6e-1d52-48bd-8f51-f46a035f641d/VC_303890932454_004-and-MO_992900971352_000-1659736432/staged_job_files/repository/vc/DimerContinuityC1__VC_303890932454_004/runner:596: DeprecationWarning: np.asscalar(a) is deprecated since NumPy v1.16, use a.item() instead nth[n], np.asscalar(val), yesno[is_continuous] /scratch.hyperion/kim-jobs/jobs/bwaters/job-7677e9e4-5765-4bbe-a7a3-f7046eddd1ad-007-16cc3d6e-1d52-48bd-8f51-f46a035f641d/VC_303890932454_004-and-MO_992900971352_000-1659736432/staged_job_files/repository/vc/DimerContinuityC1__VC_303890932454_004/runner:677: DeprecationWarning: np.asscalar(a) is deprecated since NumPy v1.16, use a.item() instead e.append(np.asscalar(val)) /usr/local/lib/python3.8/dist-packages/ase/atoms.py:504: VisibleDeprecationWarning: Creating an ndarray from ragged nested sequences (which is a list-or-tuple of lists-or-tuples-or ndarrays with different lengths or shapes) is deprecated. If you meant to do this, you must specify 'dtype=object' when creating the ndarray. a = np.asarray(a) /scratch.hyperion/kim-jobs/jobs/bwaters/job-7677e9e4-5765-4bbe-a7a3-f7046eddd1ad-007-16cc3d6e-1d52-48bd-8f51-f46a035f641d/VC_303890932454_004-and-MO_992900971352_000-1659736432/staged_job_files/repository/vc/DimerContinuityC1__VC_303890932454_004/runner:596: DeprecationWarning: np.asscalar(a) is deprecated since NumPy v1.16, use a.item() instead nth[n], np.asscalar(val), yesno[is_continuous] /scratch.hyperion/kim-jobs/jobs/bwaters/job-7677e9e4-5765-4bbe-a7a3-f7046eddd1ad-007-16cc3d6e-1d52-48bd-8f51-f46a035f641d/VC_303890932454_004-and-MO_992900971352_000-1659736432/staged_job_files/repository/vc/DimerContinuityC1__VC_303890932454_004/runner:596: DeprecationWarning: np.asscalar(a) is deprecated since NumPy v1.16, use a.item() instead nth[n], np.asscalar(val), yesno[is_continuous] /scratch.hyperion/kim-jobs/jobs/bwaters/job-7677e9e4-5765-4bbe-a7a3-f7046eddd1ad-007-16cc3d6e-1d52-48bd-8f51-f46a035f641d/VC_303890932454_004-and-MO_992900971352_000-1659736432/staged_job_files/repository/vc/DimerContinuityC1__VC_303890932454_004/runner:596: DeprecationWarning: np.asscalar(a) is deprecated since NumPy v1.16, use a.item() instead nth[n], np.asscalar(val), yesno[is_continuous] /scratch.hyperion/kim-jobs/jobs/bwaters/job-7677e9e4-5765-4bbe-a7a3-f7046eddd1ad-007-16cc3d6e-1d52-48bd-8f51-f46a035f641d/VC_303890932454_004-and-MO_992900971352_000-1659736432/staged_job_files/repository/vc/DimerContinuityC1__VC_303890932454_004/runner:677: DeprecationWarning: np.asscalar(a) is deprecated since NumPy v1.16, use a.item() instead e.append(np.asscalar(val)) /usr/local/lib/python3.8/dist-packages/ase/atoms.py:504: VisibleDeprecationWarning: Creating an ndarray from ragged nested sequences (which is a list-or-tuple of lists-or-tuples-or ndarrays with different lengths or shapes) is deprecated. If you meant to do this, you must specify 'dtype=object' when creating the ndarray. a = np.asarray(a) /scratch.hyperion/kim-jobs/jobs/bwaters/job-7677e9e4-5765-4bbe-a7a3-f7046eddd1ad-007-16cc3d6e-1d52-48bd-8f51-f46a035f641d/VC_303890932454_004-and-MO_992900971352_000-1659736432/staged_job_files/repository/vc/DimerContinuityC1__VC_303890932454_004/runner:596: DeprecationWarning: np.asscalar(a) is deprecated since NumPy v1.16, use a.item() instead nth[n], np.asscalar(val), yesno[is_continuous] /scratch.hyperion/kim-jobs/jobs/bwaters/job-7677e9e4-5765-4bbe-a7a3-f7046eddd1ad-007-16cc3d6e-1d52-48bd-8f51-f46a035f641d/VC_303890932454_004-and-MO_992900971352_000-1659736432/staged_job_files/repository/vc/DimerContinuityC1__VC_303890932454_004/runner:596: DeprecationWarning: np.asscalar(a) is deprecated since NumPy v1.16, use a.item() instead nth[n], np.asscalar(val), yesno[is_continuous] /scratch.hyperion/kim-jobs/jobs/bwaters/job-7677e9e4-5765-4bbe-a7a3-f7046eddd1ad-007-16cc3d6e-1d52-48bd-8f51-f46a035f641d/VC_303890932454_004-and-MO_992900971352_000-1659736432/staged_job_files/repository/vc/DimerContinuityC1__VC_303890932454_004/runner:596: DeprecationWarning: np.asscalar(a) is deprecated since NumPy v1.16, use a.item() instead nth[n], np.asscalar(val), yesno[is_continuous] /scratch.hyperion/kim-jobs/jobs/bwaters/job-7677e9e4-5765-4bbe-a7a3-f7046eddd1ad-007-16cc3d6e-1d52-48bd-8f51-f46a035f641d/VC_303890932454_004-and-MO_992900971352_000-1659736432/staged_job_files/repository/vc/DimerContinuityC1__VC_303890932454_004/runner:677: DeprecationWarning: np.asscalar(a) is deprecated since NumPy v1.16, use a.item() instead e.append(np.asscalar(val)) /usr/local/lib/python3.8/dist-packages/ase/atoms.py:504: VisibleDeprecationWarning: Creating an ndarray from ragged nested sequences (which is a list-or-tuple of lists-or-tuples-or ndarrays with different lengths or shapes) is deprecated. If you meant to do this, you must specify 'dtype=object' when creating the ndarray. a = np.asarray(a) /scratch.hyperion/kim-jobs/jobs/bwaters/job-7677e9e4-5765-4bbe-a7a3-f7046eddd1ad-007-16cc3d6e-1d52-48bd-8f51-f46a035f641d/VC_303890932454_004-and-MO_992900971352_000-1659736432/staged_job_files/repository/vc/DimerContinuityC1__VC_303890932454_004/runner:596: DeprecationWarning: np.asscalar(a) is deprecated since NumPy v1.16, use a.item() instead nth[n], np.asscalar(val), yesno[is_continuous] /scratch.hyperion/kim-jobs/jobs/bwaters/job-7677e9e4-5765-4bbe-a7a3-f7046eddd1ad-007-16cc3d6e-1d52-48bd-8f51-f46a035f641d/VC_303890932454_004-and-MO_992900971352_000-1659736432/staged_job_files/repository/vc/DimerContinuityC1__VC_303890932454_004/runner:596: DeprecationWarning: np.asscalar(a) is deprecated since NumPy v1.16, use a.item() instead nth[n], np.asscalar(val), yesno[is_continuous] /scratch.hyperion/kim-jobs/jobs/bwaters/job-7677e9e4-5765-4bbe-a7a3-f7046eddd1ad-007-16cc3d6e-1d52-48bd-8f51-f46a035f641d/VC_303890932454_004-and-MO_992900971352_000-1659736432/staged_job_files/repository/vc/DimerContinuityC1__VC_303890932454_004/runner:596: DeprecationWarning: np.asscalar(a) is deprecated since NumPy v1.16, use a.item() instead nth[n], np.asscalar(val), yesno[is_continuous] /scratch.hyperion/kim-jobs/jobs/bwaters/job-7677e9e4-5765-4bbe-a7a3-f7046eddd1ad-007-16cc3d6e-1d52-48bd-8f51-f46a035f641d/VC_303890932454_004-and-MO_992900971352_000-1659736432/staged_job_files/repository/vc/DimerContinuityC1__VC_303890932454_004/runner:677: DeprecationWarning: np.asscalar(a) is deprecated since NumPy v1.16, use a.item() instead e.append(np.asscalar(val)) {"realtime":21.94,"usertime":20.09,"systime":1.32,"memmax":59592,"memavg":0}