Model Extended KIM ID = === Verification check vc-memory-leak start (2018-12-15 06:18:45) === !!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!! !!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!! !!!!! !!!!! !!!!! VERIFICATION CHECK: vc-memory-leak !!!!! !!!!! !!!!! !!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!! !!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!! Description: Check that the model has no memory leaks. This is tested using the Valgrind memory debugging tool (http://valgrind.org) by performing a series of energy and force calculations on a randomly distorted face-centered cubic (FCC) cube base structure for both non-periodic and periodic boundary conditions. Separate configurations are tested for each species supported by the model, as well as one containing a random distribution of all species. Configurations used for testing are provided as auxiliary files. Author: Ellad Tadmor ----------------------------------------------------------------------------------------------------- Results for KIM Model : EAM_Dynamo_ZhouWadleyJohnson_2001NISTretabulation_Mo__MO_230319944007_000 Supported species : Mo random seed = 13 lattice constant (orig) = 3.000 perturbation amplitude = 0.300 number unit cells per side = 2 ----------------------------------------------------------------------------------------------------- MONOATOMIC STRUCTURE (pbc=False)-- Species = Mo (Configuration in file "config-F-Mo.xyz") ----------------------------------------------------------------------------------------------------- Energy = 183.581246799 Forces: 1 -1.01702349e+01 -1.97959495e+01 -2.07430128e+01 2 -2.02937221e+01 3.25551605e+01 -2.72145125e+01 3 -3.45504102e+00 -2.96874060e+01 -2.98227833e+00 4 -1.59500301e+01 9.26077158e+00 1.06582433e+01 5 2.97697972e+01 -4.53914665e+01 -9.64265125e+00 6 1.09084879e+01 3.39421437e+00 -1.74540095e+01 7 1.63199777e+01 -6.55355908e+01 -5.95810632e+01 8 -2.04708698e+01 -2.17155846e+01 -1.04899568e+01 9 -2.39128385e+01 -3.47758642e+01 -5.76904454e+01 10 -2.68929442e+00 4.83477240e+01 -4.96897553e+01 11 -9.45627825e+00 -3.56355616e+01 2.10895729e+01 12 -3.58208213e+01 4.80148431e+01 2.65520631e+01 13 -1.03377969e+01 -2.70612895e+01 -9.57545740e+01 14 1.92590293e+01 2.30213400e+01 -1.60739995e+01 15 8.60780525e+01 -9.90324721e+00 2.12935522e+01 16 1.08656019e+01 6.97568541e+01 3.17985754e+01 17 -2.71131326e+01 -1.28466818e+01 -9.94488879e+00 18 -1.43848640e+01 2.00449247e+01 1.40723651e+01 19 1.28340643e+01 -2.31634741e+01 1.88879680e+01 20 -1.24743510e+01 1.73569287e+01 1.42515081e+01 21 -2.21213656e+01 -2.98888044e+01 2.00869131e+01 22 4.67831331e+01 4.96633651e+01 4.65800314e+01 23 9.51438654e+00 -4.78884624e+00 1.71069982e+01 24 5.60103277e+00 1.56010183e+00 1.56562090e+01 25 -2.56117609e+01 -8.90790907e+00 1.89594120e+01 26 -1.63312715e+01 4.33775810e+01 -2.07971508e+01 27 2.03030835e+01 -6.95155634e+01 2.47873100e+01 28 -5.99261377e+01 4.89989008e+01 1.02502512e+01 29 -1.50247204e+01 -2.20874090e+01 1.68496914e+01 30 2.20819281e+01 3.26620271e+01 2.15703620e+00 31 3.55384935e+01 -2.18771159e+01 3.01408447e+01 32 1.96874627e+01 3.45630267e+01 3.68797525e+01 ================================================================================ VALGRIND OUTPUT ================================================================================ ==9941== Memcheck, a memory error detector ==9941== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. ==9941== Using Valgrind-3.13.0 and LibVEX; rerun with -h for copyright info ==9941== Command: python runner2.py EAM_Dynamo_ZhouWadleyJohnson_2001NISTretabulation_Mo__MO_230319944007_000 ==9941== ==9941== Syscall param sched_getaffinity(mask) points to unaddressable byte(s) ==9941== at 0x4F3FF2F: sched_getaffinity@@GLIBC_2.3.4 (sched_getaffinity.c:36) ==9941== by 0x705438B: get_num_procs (in /usr/local/lib/python2.7/dist-packages/numpy/.libs/libopenblasp-r0-8dca6697.3.0.dev.so) ==9941== by 0x705447C: blas_get_cpu_number (in /usr/local/lib/python2.7/dist-packages/numpy/.libs/libopenblasp-r0-8dca6697.3.0.dev.so) ==9941== by 0x6E2C077: gotoblas_init (in /usr/local/lib/python2.7/dist-packages/numpy/.libs/libopenblasp-r0-8dca6697.3.0.dev.so) ==9941== by 0x4010732: call_init (dl-init.c:72) ==9941== by 0x4010732: _dl_init (dl-init.c:119) ==9941== by 0x40151FE: dl_open_worker (dl-open.c:522) ==9941== by 0x4FA32DE: _dl_catch_exception (dl-error-skeleton.c:196) ==9941== by 0x40147C9: _dl_open (dl-open.c:605) ==9941== by 0x544CF95: dlopen_doit (dlopen.c:66) ==9941== by 0x4FA32DE: _dl_catch_exception (dl-error-skeleton.c:196) ==9941== by 0x4FA336E: _dl_catch_error (dl-error-skeleton.c:215) ==9941== by 0x544D734: _dlerror_run (dlerror.c:162) ==9941== Address 0x0 is not stack'd, malloc'd or (recently) free'd ==9941== ==9941== ==9941== HEAP SUMMARY: ==9941== in use at exit: 5,903,029 bytes in 3,958 blocks ==9941== total heap usage: 110,779 allocs, 106,821 frees, 59,269,385 bytes allocated ==9941== ==9941== LEAK SUMMARY: ==9941== definitely lost: 0 bytes in 0 blocks ==9941== indirectly lost: 0 bytes in 0 blocks ==9941== possibly lost: 182,191 bytes in 111 blocks ==9941== still reachable: 5,720,838 bytes in 3,847 blocks ==9941== suppressed: 0 bytes in 0 blocks ==9941== Rerun with --leak-check=full to see details of leaked memory ==9941== ==9941== For counts of detected and suppressed errors, rerun with: -v ==9941== ERROR SUMMARY: 1 errors from 1 contexts (suppressed: 2509 from 175) ================================================================================ To pass this verification check the number of bytes that are "definitely lost" or "indirectly lost" must be zero. NOTE that Valgrind will typically report non-zero "possibly lost" bytes due to Python's internal memory allocation and garbage collection that it does not monitor. Full Valgrind output written to auxiliary file "valgrind.out" Grade: P Comment: No memory leak detected. === Verification check vc-memory-leak end (2018-12-15 06:19:11) ===