Model Extended KIM ID = === Verification check vc-memory-leak start (2018-12-15 06:17:25) === !!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!! !!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!! !!!!! !!!!! !!!!! VERIFICATION CHECK: vc-memory-leak !!!!! !!!!! !!!!! !!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!! !!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!! Description: Check that the model has no memory leaks. This is tested using the Valgrind memory debugging tool (http://valgrind.org) by performing a series of energy and force calculations on a randomly distorted face-centered cubic (FCC) cube base structure for both non-periodic and periodic boundary conditions. Separate configurations are tested for each species supported by the model, as well as one containing a random distribution of all species. Configurations used for testing are provided as auxiliary files. Author: Ellad Tadmor ----------------------------------------------------------------------------------------------------- Results for KIM Model : EAM_Dynamo_ZhouJohnsonWadley_2004_Au__MO_468407568810_005 Supported species : Au random seed = 13 lattice constant (orig) = 3.000 perturbation amplitude = 0.300 number unit cells per side = 2 ----------------------------------------------------------------------------------------------------- MONOATOMIC STRUCTURE (pbc=False)-- Species = Au (Configuration in file "config-F-Au.xyz") ----------------------------------------------------------------------------------------------------- Energy = 249.388523018 Forces: 1 -9.72774341e+00 -3.40269876e+01 -2.71528483e+01 2 -9.28056885e+00 9.78500987e+00 -2.51653981e+01 3 1.15609660e+01 -2.97863855e+01 -1.43898200e+01 4 -2.14980514e+01 2.21576729e+01 1.87140523e+01 5 8.76670136e+00 -3.20020736e+01 -1.26154346e+01 6 1.43501249e+01 5.79371742e+00 -1.74782083e+01 7 2.11328653e+01 -6.12239495e+01 -4.93086264e+01 8 -1.57933177e+01 -1.37668064e+01 -9.58931280e+00 9 -2.34836925e+01 -2.49776116e+01 -5.53887203e+01 10 -4.72769450e+00 4.79450904e+01 -4.83002225e+01 11 -1.58227444e+01 -3.08783236e+01 2.14349174e+01 12 -3.38576053e+01 4.08531656e+01 2.54362519e+01 13 -3.75990484e+00 -3.50877295e+01 -8.92706245e+01 14 2.29922587e+01 3.15620269e+01 -2.85423351e+01 15 8.18471536e+01 -2.19640890e+01 2.71089241e+01 16 -2.50798744e+00 7.62514313e+01 2.77820991e+01 17 -3.59602321e+01 -1.65815127e+01 4.34142464e+00 18 5.82650622e+00 2.19472951e+01 5.52838209e+00 19 3.21872620e+00 -2.81957680e+01 1.64692630e+01 20 -1.61098857e+01 8.93419665e+00 1.38977775e+01 21 -2.14559936e+01 -2.73767520e+01 1.92208052e+01 22 4.74050639e+01 4.32626254e+01 3.94364912e+01 23 9.61922378e+00 -5.44121104e+00 1.83707813e+01 24 8.95148732e+00 4.05836749e+00 1.71279430e+01 25 -3.10960097e+01 -7.57936162e+00 3.38415893e-01 26 -1.57151746e+01 4.65981703e+01 -1.61136971e+01 27 1.76697478e+01 -5.81491860e+01 3.08422279e+01 28 -5.43997477e+01 4.60086909e+01 1.36373305e+01 29 -1.23215562e+01 -2.20327832e+01 1.96226574e+01 30 2.51417254e+01 3.84886317e+01 -1.28896785e+00 31 3.17430520e+01 -2.72523834e+01 3.75404600e+01 32 1.72923074e+01 3.26768221e+01 3.77540114e+01 ================================================================================ VALGRIND OUTPUT ================================================================================ ==8149== Memcheck, a memory error detector ==8149== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. ==8149== Using Valgrind-3.13.0 and LibVEX; rerun with -h for copyright info ==8149== Command: python runner2.py EAM_Dynamo_ZhouJohnsonWadley_2004_Au__MO_468407568810_005 ==8149== ==8149== Syscall param sched_getaffinity(mask) points to unaddressable byte(s) ==8149== at 0x4F3FF2F: sched_getaffinity@@GLIBC_2.3.4 (sched_getaffinity.c:36) ==8149== by 0x705438B: get_num_procs (in /usr/local/lib/python2.7/dist-packages/numpy/.libs/libopenblasp-r0-8dca6697.3.0.dev.so) ==8149== by 0x705447C: blas_get_cpu_number (in /usr/local/lib/python2.7/dist-packages/numpy/.libs/libopenblasp-r0-8dca6697.3.0.dev.so) ==8149== by 0x6E2C077: gotoblas_init (in /usr/local/lib/python2.7/dist-packages/numpy/.libs/libopenblasp-r0-8dca6697.3.0.dev.so) ==8149== by 0x4010732: call_init (dl-init.c:72) ==8149== by 0x4010732: _dl_init (dl-init.c:119) ==8149== by 0x40151FE: dl_open_worker (dl-open.c:522) ==8149== by 0x4FA32DE: _dl_catch_exception (dl-error-skeleton.c:196) ==8149== by 0x40147C9: _dl_open (dl-open.c:605) ==8149== by 0x544CF95: dlopen_doit (dlopen.c:66) ==8149== by 0x4FA32DE: _dl_catch_exception (dl-error-skeleton.c:196) ==8149== by 0x4FA336E: _dl_catch_error (dl-error-skeleton.c:215) ==8149== by 0x544D734: _dlerror_run (dlerror.c:162) ==8149== Address 0x0 is not stack'd, malloc'd or (recently) free'd ==8149== ==8149== ==8149== HEAP SUMMARY: ==8149== in use at exit: 5,937,181 bytes in 3,958 blocks ==8149== total heap usage: 110,781 allocs, 106,823 frees, 59,379,439 bytes allocated ==8149== ==8149== LEAK SUMMARY: ==8149== definitely lost: 0 bytes in 0 blocks ==8149== indirectly lost: 0 bytes in 0 blocks ==8149== possibly lost: 182,191 bytes in 111 blocks ==8149== still reachable: 5,754,990 bytes in 3,847 blocks ==8149== suppressed: 0 bytes in 0 blocks ==8149== Rerun with --leak-check=full to see details of leaked memory ==8149== ==8149== For counts of detected and suppressed errors, rerun with: -v ==8149== ERROR SUMMARY: 1 errors from 1 contexts (suppressed: 2508 from 175) ================================================================================ To pass this verification check the number of bytes that are "definitely lost" or "indirectly lost" must be zero. NOTE that Valgrind will typically report non-zero "possibly lost" bytes due to Python's internal memory allocation and garbage collection that it does not monitor. Full Valgrind output written to auxiliary file "valgrind.out" Grade: P Comment: No memory leak detected. === Verification check vc-memory-leak end (2018-12-15 06:17:50) ===