Model Extended KIM ID =
=== Verification check vc-memory-leak start (2018-12-15 06:17:25) ===
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!!!!! VERIFICATION CHECK: vc-memory-leak !!!!!
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Description: Check that the model has no memory leaks. This is tested using the
Valgrind memory debugging tool (http://valgrind.org) by performing
a series of energy and force calculations on a randomly distorted
face-centered cubic (FCC) cube base structure for both non-periodic
and periodic boundary conditions. Separate configurations are
tested for each species supported by the model, as well as one
containing a random distribution of all species. Configurations
used for testing are provided as auxiliary files.
Author: Ellad Tadmor
-----------------------------------------------------------------------------------------------------
Results for KIM Model : EAM_Dynamo_ZhouJohnsonWadley_2004_Au__MO_468407568810_005
Supported species : Au
random seed = 13
lattice constant (orig) = 3.000
perturbation amplitude = 0.300
number unit cells per side = 2
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MONOATOMIC STRUCTURE (pbc=False)-- Species = Au (Configuration in file "config-F-Au.xyz")
-----------------------------------------------------------------------------------------------------
Energy = 249.388523018
Forces:
1 -9.72774341e+00 -3.40269876e+01 -2.71528483e+01
2 -9.28056885e+00 9.78500987e+00 -2.51653981e+01
3 1.15609660e+01 -2.97863855e+01 -1.43898200e+01
4 -2.14980514e+01 2.21576729e+01 1.87140523e+01
5 8.76670136e+00 -3.20020736e+01 -1.26154346e+01
6 1.43501249e+01 5.79371742e+00 -1.74782083e+01
7 2.11328653e+01 -6.12239495e+01 -4.93086264e+01
8 -1.57933177e+01 -1.37668064e+01 -9.58931280e+00
9 -2.34836925e+01 -2.49776116e+01 -5.53887203e+01
10 -4.72769450e+00 4.79450904e+01 -4.83002225e+01
11 -1.58227444e+01 -3.08783236e+01 2.14349174e+01
12 -3.38576053e+01 4.08531656e+01 2.54362519e+01
13 -3.75990484e+00 -3.50877295e+01 -8.92706245e+01
14 2.29922587e+01 3.15620269e+01 -2.85423351e+01
15 8.18471536e+01 -2.19640890e+01 2.71089241e+01
16 -2.50798744e+00 7.62514313e+01 2.77820991e+01
17 -3.59602321e+01 -1.65815127e+01 4.34142464e+00
18 5.82650622e+00 2.19472951e+01 5.52838209e+00
19 3.21872620e+00 -2.81957680e+01 1.64692630e+01
20 -1.61098857e+01 8.93419665e+00 1.38977775e+01
21 -2.14559936e+01 -2.73767520e+01 1.92208052e+01
22 4.74050639e+01 4.32626254e+01 3.94364912e+01
23 9.61922378e+00 -5.44121104e+00 1.83707813e+01
24 8.95148732e+00 4.05836749e+00 1.71279430e+01
25 -3.10960097e+01 -7.57936162e+00 3.38415893e-01
26 -1.57151746e+01 4.65981703e+01 -1.61136971e+01
27 1.76697478e+01 -5.81491860e+01 3.08422279e+01
28 -5.43997477e+01 4.60086909e+01 1.36373305e+01
29 -1.23215562e+01 -2.20327832e+01 1.96226574e+01
30 2.51417254e+01 3.84886317e+01 -1.28896785e+00
31 3.17430520e+01 -2.72523834e+01 3.75404600e+01
32 1.72923074e+01 3.26768221e+01 3.77540114e+01
================================================================================
VALGRIND OUTPUT
================================================================================
==8149== Memcheck, a memory error detector
==8149== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al.
==8149== Using Valgrind-3.13.0 and LibVEX; rerun with -h for copyright info
==8149== Command: python runner2.py EAM_Dynamo_ZhouJohnsonWadley_2004_Au__MO_468407568810_005
==8149==
==8149== Syscall param sched_getaffinity(mask) points to unaddressable byte(s)
==8149== at 0x4F3FF2F: sched_getaffinity@@GLIBC_2.3.4 (sched_getaffinity.c:36)
==8149== by 0x705438B: get_num_procs (in /usr/local/lib/python2.7/dist-packages/numpy/.libs/libopenblasp-r0-8dca6697.3.0.dev.so)
==8149== by 0x705447C: blas_get_cpu_number (in /usr/local/lib/python2.7/dist-packages/numpy/.libs/libopenblasp-r0-8dca6697.3.0.dev.so)
==8149== by 0x6E2C077: gotoblas_init (in /usr/local/lib/python2.7/dist-packages/numpy/.libs/libopenblasp-r0-8dca6697.3.0.dev.so)
==8149== by 0x4010732: call_init (dl-init.c:72)
==8149== by 0x4010732: _dl_init (dl-init.c:119)
==8149== by 0x40151FE: dl_open_worker (dl-open.c:522)
==8149== by 0x4FA32DE: _dl_catch_exception (dl-error-skeleton.c:196)
==8149== by 0x40147C9: _dl_open (dl-open.c:605)
==8149== by 0x544CF95: dlopen_doit (dlopen.c:66)
==8149== by 0x4FA32DE: _dl_catch_exception (dl-error-skeleton.c:196)
==8149== by 0x4FA336E: _dl_catch_error (dl-error-skeleton.c:215)
==8149== by 0x544D734: _dlerror_run (dlerror.c:162)
==8149== Address 0x0 is not stack'd, malloc'd or (recently) free'd
==8149==
==8149==
==8149== HEAP SUMMARY:
==8149== in use at exit: 5,937,181 bytes in 3,958 blocks
==8149== total heap usage: 110,781 allocs, 106,823 frees, 59,379,439 bytes allocated
==8149==
==8149== LEAK SUMMARY:
==8149== definitely lost: 0 bytes in 0 blocks
==8149== indirectly lost: 0 bytes in 0 blocks
==8149== possibly lost: 182,191 bytes in 111 blocks
==8149== still reachable: 5,754,990 bytes in 3,847 blocks
==8149== suppressed: 0 bytes in 0 blocks
==8149== Rerun with --leak-check=full to see details of leaked memory
==8149==
==8149== For counts of detected and suppressed errors, rerun with: -v
==8149== ERROR SUMMARY: 1 errors from 1 contexts (suppressed: 2508 from 175)
================================================================================
To pass this verification check the number of bytes that are "definitely lost"
or "indirectly lost" must be zero.
NOTE that Valgrind will typically report non-zero "possibly lost" bytes due to
Python's internal memory allocation and garbage collection that it does not monitor.
Full Valgrind output written to auxiliary file "valgrind.out"
Grade: P
Comment: No memory leak detected.
=== Verification check vc-memory-leak end (2018-12-15 06:17:50) ===