Enter a model name: === Verification check vc-memory-leak start (2019-08-08 23:21:26) === !!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!! !!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!! !!!!! !!!!! !!!!! VERIFICATION CHECK: vc-memory-leak !!!!! !!!!! !!!!! !!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!! !!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!! Description: Check that the model has no memory leaks. This is tested using the Valgrind memory debugging tool (http://valgrind.org) by performing a series of energy and force calculations on a randomly distorted face-centered cubic (FCC) cube base structure for both non-periodic and periodic boundary conditions. Separate configurations are tested for each species supported by the model, as well as one containing a random distribution of all species. Configurations used for testing are provided as auxiliary files. Author: Ellad Tadmor ----------------------------------------------------------------------------------------------------- Results for KIM Model : EAM_Dynamo_RaveloGermannGuerrero_2013Ta2_Ta__MO_330376344314_000 Supported species : Ta random seed = 13 lattice constant (orig) = 3.000 perturbation amplitude = 0.300 number unit cells per side = 2 ----------------------------------------------------------------------------------------------------- MONOATOMIC STRUCTURE (pbc=False)-- Species = Ta (Configuration in file "config-F-Ta.xyz") ----------------------------------------------------------------------------------------------------- Energy = 68.43070105752918 Forces: 1 -8.66012834e+00 -1.45302922e+01 -1.57868196e+01 2 -9.95535978e+00 6.30941563e+00 -1.88540764e+01 3 4.43899017e+00 -2.23966584e+01 -6.95844802e+00 4 -1.38956907e+01 9.77546787e+00 8.10693959e+00 5 1.35959114e+00 -2.64801271e+01 -1.16455292e+01 6 1.49747068e+01 4.03030295e+00 -1.77325154e+01 7 1.79616324e+01 -3.45555047e+01 -2.09786908e+01 8 -9.20024782e+00 -1.37323216e+01 5.91771225e+00 9 -1.77804286e+01 -1.26145816e+01 -2.77105079e+01 10 -6.48130320e+00 3.68012271e+01 -2.99573942e+01 11 -1.87640725e+01 -2.00207010e+01 1.46607375e+01 12 -1.95775118e+01 2.17305898e+01 8.86706146e+00 13 1.40621598e+00 -1.26456349e+01 -5.86778493e+01 14 1.29128097e+01 2.10587195e+01 -1.69955190e+01 15 4.81884747e+01 -1.45244481e+01 9.02789888e+00 16 7.33058090e+00 4.83265380e+01 1.60989683e+01 17 -2.21367974e+01 -1.07055183e+01 -6.82526972e+00 18 -7.07766618e+00 1.34032446e+01 6.82737199e+00 19 6.45878390e+00 -2.17462788e+01 1.37246671e+01 20 -9.80433415e+00 1.38061320e+01 1.19799048e+01 21 -1.28139212e+01 -2.53644546e+01 8.63342923e+00 22 2.73739113e+01 2.75887607e+01 1.64262809e+01 23 9.63761751e+00 -5.05257469e+00 1.52166089e+01 24 4.19006411e+00 9.35229794e+00 1.62162469e+01 25 -2.38817513e+01 -1.54818782e+01 -2.01340684e+00 26 -7.69523928e+00 3.56622196e+01 -1.35113538e+01 27 8.13824775e+00 -3.74478497e+01 2.54394837e+01 28 -3.07873066e+01 2.71374998e+01 1.31328858e+01 29 -1.46683519e+00 -1.92336473e+01 6.67224073e+00 30 1.72749910e+01 1.94142667e+01 6.56894335e+00 31 2.54796004e+01 -1.19994691e+01 1.80450238e+01 32 1.28523764e+01 2.41352582e+01 2.60849749e+01 MONOATOMIC STRUCTURE (pbc=True)-- Species = Ta (Configuration in file "config-T-Ta.xyz") ----------------------------------------------------------------------------------------------------- Energy = 68.43070105752918 Forces: 1 -8.66012834e+00 -1.45302922e+01 -1.57868196e+01 2 -9.95535978e+00 6.30941563e+00 -1.88540764e+01 3 4.43899017e+00 -2.23966584e+01 -6.95844802e+00 4 -1.38956907e+01 9.77546787e+00 8.10693959e+00 5 1.35959114e+00 -2.64801271e+01 -1.16455292e+01 6 1.49747068e+01 4.03030295e+00 -1.77325154e+01 7 1.79616324e+01 -3.45555047e+01 -2.09786908e+01 8 -9.20024782e+00 -1.37323216e+01 5.91771225e+00 9 -1.77804286e+01 -1.26145816e+01 -2.77105079e+01 10 -6.48130320e+00 3.68012271e+01 -2.99573942e+01 11 -1.87640725e+01 -2.00207010e+01 1.46607375e+01 12 -1.95775118e+01 2.17305898e+01 8.86706146e+00 13 1.40621598e+00 -1.26456349e+01 -5.86778493e+01 14 1.29128097e+01 2.10587195e+01 -1.69955190e+01 15 4.81884747e+01 -1.45244481e+01 9.02789888e+00 16 7.33058090e+00 4.83265380e+01 1.60989683e+01 17 -2.21367974e+01 -1.07055183e+01 -6.82526972e+00 18 -7.07766618e+00 1.34032446e+01 6.82737199e+00 19 6.45878390e+00 -2.17462788e+01 1.37246671e+01 20 -9.80433415e+00 1.38061320e+01 1.19799048e+01 21 -1.28139212e+01 -2.53644546e+01 8.63342923e+00 22 2.73739113e+01 2.75887607e+01 1.64262809e+01 23 9.63761751e+00 -5.05257469e+00 1.52166089e+01 24 4.19006411e+00 9.35229794e+00 1.62162469e+01 25 -2.38817513e+01 -1.54818782e+01 -2.01340684e+00 26 -7.69523928e+00 3.56622196e+01 -1.35113538e+01 27 8.13824775e+00 -3.74478497e+01 2.54394837e+01 28 -3.07873066e+01 2.71374998e+01 1.31328858e+01 29 -1.46683519e+00 -1.92336473e+01 6.67224073e+00 30 1.72749910e+01 1.94142667e+01 6.56894335e+00 31 2.54796004e+01 -1.19994691e+01 1.80450238e+01 32 1.28523764e+01 2.41352582e+01 2.60849749e+01 ================================================================================ VALGRIND OUTPUT ================================================================================ ==66246== Memcheck, a memory error detector ==66246== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. ==66246== Using Valgrind-3.13.0 and LibVEX; rerun with -h for copyright info ==66246== Command: python runner2.py EAM_Dynamo_RaveloGermannGuerrero_2013Ta2_Ta__MO_330376344314_000 ==66246== ==68006== Warning: invalid file descriptor 1048564 in syscall close() ==68006== Warning: invalid file descriptor 1048565 in syscall close() ==68006== Warning: invalid file descriptor 1048566 in syscall close() ==68006== Warning: invalid file descriptor 1048567 in syscall close() ==68006== Use --log-fd= to select an alternative log fd. ==68006== Warning: invalid file descriptor 1048568 in syscall close() ==68006== Warning: invalid file descriptor 1048569 in syscall close() ==68008== Warning: invalid file descriptor 1048564 in syscall close() ==68008== Warning: invalid file descriptor 1048565 in syscall close() ==68008== Warning: invalid file descriptor 1048566 in syscall close() ==68008== Warning: invalid file descriptor 1048567 in syscall close() ==68008== Use --log-fd= to select an alternative log fd. ==68008== Warning: invalid file descriptor 1048568 in syscall close() ==68008== Warning: invalid file descriptor 1048569 in syscall close() ==68010== Warning: invalid file descriptor 1048564 in syscall close() ==68010== Warning: invalid file descriptor 1048565 in syscall close() ==68010== Warning: invalid file descriptor 1048566 in syscall close() ==68010== Warning: invalid file descriptor 1048567 in syscall close() ==68010== Use --log-fd= to select an alternative log fd. ==68010== Warning: invalid file descriptor 1048568 in syscall close() ==68010== Warning: invalid file descriptor 1048569 in syscall close() ==68011== Warning: invalid file descriptor 1048564 in syscall close() ==68011== Warning: invalid file descriptor 1048565 in syscall close() ==68011== Warning: invalid file descriptor 1048566 in syscall close() ==68011== Warning: invalid file descriptor 1048567 in syscall close() ==68011== Use --log-fd= to select an alternative log fd. ==68011== Warning: invalid file descriptor 1048568 in syscall close() ==68011== Warning: invalid file descriptor 1048569 in syscall close() ==68012== Warning: invalid file descriptor 1048564 in syscall close() ==68012== Warning: invalid file descriptor 1048565 in syscall close() ==68012== Warning: invalid file descriptor 1048566 in syscall close() ==68012== Warning: invalid file descriptor 1048567 in syscall close() ==68012== Use --log-fd= to select an alternative log fd. ==68012== Warning: invalid file descriptor 1048568 in syscall close() ==68012== Warning: invalid file descriptor 1048569 in syscall close() ==68013== Warning: invalid file descriptor 1048564 in syscall close() ==68013== Warning: invalid file descriptor 1048565 in syscall close() ==68013== Warning: invalid file descriptor 1048566 in syscall close() ==68013== Warning: invalid file descriptor 1048567 in syscall close() ==68013== Use --log-fd= to select an alternative log fd. ==68013== Warning: invalid file descriptor 1048568 in syscall close() ==68013== Warning: invalid file descriptor 1048569 in syscall close() ==66246== ==66246== HEAP SUMMARY: ==66246== in use at exit: 1,718,292 bytes in 1,321 blocks ==66246== total heap usage: 31,120 allocs, 29,799 frees, 42,969,293 bytes allocated ==66246== ==66246== LEAK SUMMARY: ==66246== definitely lost: 0 bytes in 0 blocks ==66246== indirectly lost: 0 bytes in 0 blocks ==66246== possibly lost: 178,943 bytes in 97 blocks ==66246== still reachable: 1,539,349 bytes in 1,224 blocks ==66246== suppressed: 0 bytes in 0 blocks ==66246== Rerun with --leak-check=full to see details of leaked memory ==66246== ==66246== For counts of detected and suppressed errors, rerun with: -v ==66246== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 16358 from 611) ================================================================================ To pass this verification check the number of bytes that are "definitely lost" or "indirectly lost" must be zero. NOTE that Valgrind will typically report non-zero "possibly lost" bytes due to Python's internal memory allocation and garbage collection that it does not monitor. Full Valgrind output written to auxiliary file "valgrind.out" Grade: P Comment: No memory leak detected. === Verification check vc-memory-leak end (2019-08-08 23:21:49) ===