Enter a model name: === Verification check vc-memory-leak start (2020-04-05 20:57:17) === !!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!! !!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!! !!!!! !!!!! !!!!! VERIFICATION CHECK: vc-memory-leak !!!!! !!!!! !!!!! !!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!! !!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!! Description: Check that the model has no memory leaks. This is tested using the Valgrind memory debugging tool (http://valgrind.org) by performing a series of energy and force calculations on a randomly distorted face-centered cubic (FCC) cube base structure for both non-periodic and periodic boundary conditions. Separate configurations are tested for each species supported by the model, as well as one containing a random distribution of all species. Configurations used for testing are provided as auxiliary files. Author: Ellad Tadmor and Daniel S. Karls ----------------------------------------------------------------------------------------------------- Results for KIM Model : EAM_Dynamo_MarinicaVentelonGilbert_2013EAM3_W__MO_706622909913_000 Supported species : W random seed = 13 lattice constant (orig) = 3.000 perturbation amplitude = 0.300 number unit cells per side = 2 ----------------------------------------------------------------------------------------------------- MONOATOMIC STRUCTURE (pbc=False)-- Species = W (Configuration in file "config-F-W.xyz") ----------------------------------------------------------------------------------------------------- Energy = 840.928764856622 Forces: 1 -3.95167146e+01 -6.02291255e+01 -7.15777356e+01 2 -3.27642288e+01 4.16727392e+01 -4.17894355e+01 3 4.11346533e+01 -7.58653790e+01 -2.95439638e+01 4 -4.66741913e+01 2.21741203e+01 1.84660313e+01 5 9.96598618e-01 -9.32610032e+01 -4.31616997e+01 6 4.69558904e+01 3.75249916e+01 -5.49027979e+01 7 8.09864106e+01 -1.38638398e+02 -7.64979550e+01 8 -7.38869342e+01 -7.57558985e+01 -2.88633504e+01 9 -6.72438306e+01 -5.99230112e+01 -1.14906842e+02 10 -2.74493965e+01 1.54047476e+02 -1.23715470e+02 11 -3.71543394e+01 -1.03559169e+02 2.81289861e+01 12 -8.48090253e+01 1.22812650e+02 9.92788359e+00 13 3.90677912e+01 -7.94879360e+01 -1.99467084e+02 14 4.37854521e+01 6.34310244e+01 -5.16559111e+01 15 1.87129429e+02 -3.51968482e+01 1.14779613e+01 16 5.61792106e+01 1.95731113e+02 5.33851149e+01 17 -1.23097794e+02 -6.58254173e+01 -3.62462586e+01 18 2.21833086e+01 8.96705049e+01 -6.56684627e+00 19 4.24661187e+01 -1.18978124e+02 7.09734990e+01 20 -5.27773251e+01 7.27168580e+01 6.28335891e+01 21 -9.34129245e+01 -7.91726173e+01 3.26017523e+01 22 1.29025407e+02 1.16167581e+02 7.07046463e+01 23 3.48286365e+01 -1.66468078e+01 7.53209642e+01 24 5.11034829e+01 3.18035018e+01 4.83420171e+01 25 -9.60651473e+01 -4.29291892e+01 1.05939884e+02 26 -4.18433863e+01 1.43501560e+02 -4.68432699e+01 27 6.18783816e+00 -1.46737365e+02 6.56308178e+01 28 -1.18586911e+02 8.65945785e+01 2.93781727e+01 29 -4.02413792e+01 -9.01666410e+01 6.52527700e+01 30 6.38583271e+01 1.07039948e+02 -4.02465198e+01 31 8.98105702e+01 -1.03883578e+02 1.00497249e+02 32 3.98244046e+01 1.01367863e+02 1.17123800e+02 MONOATOMIC STRUCTURE (pbc=True)-- Species = W (Configuration in file "config-T-W.xyz") ----------------------------------------------------------------------------------------------------- Energy = 840.928764856622 Forces: 1 -3.95167146e+01 -6.02291255e+01 -7.15777356e+01 2 -3.27642288e+01 4.16727392e+01 -4.17894355e+01 3 4.11346533e+01 -7.58653790e+01 -2.95439638e+01 4 -4.66741913e+01 2.21741203e+01 1.84660313e+01 5 9.96598618e-01 -9.32610032e+01 -4.31616997e+01 6 4.69558904e+01 3.75249916e+01 -5.49027979e+01 7 8.09864106e+01 -1.38638398e+02 -7.64979550e+01 8 -7.38869342e+01 -7.57558985e+01 -2.88633504e+01 9 -6.72438306e+01 -5.99230112e+01 -1.14906842e+02 10 -2.74493965e+01 1.54047476e+02 -1.23715470e+02 11 -3.71543394e+01 -1.03559169e+02 2.81289861e+01 12 -8.48090253e+01 1.22812650e+02 9.92788359e+00 13 3.90677912e+01 -7.94879360e+01 -1.99467084e+02 14 4.37854521e+01 6.34310244e+01 -5.16559111e+01 15 1.87129429e+02 -3.51968482e+01 1.14779613e+01 16 5.61792106e+01 1.95731113e+02 5.33851149e+01 17 -1.23097794e+02 -6.58254173e+01 -3.62462586e+01 18 2.21833086e+01 8.96705049e+01 -6.56684627e+00 19 4.24661187e+01 -1.18978124e+02 7.09734990e+01 20 -5.27773251e+01 7.27168580e+01 6.28335891e+01 21 -9.34129245e+01 -7.91726173e+01 3.26017523e+01 22 1.29025407e+02 1.16167581e+02 7.07046463e+01 23 3.48286365e+01 -1.66468078e+01 7.53209642e+01 24 5.11034829e+01 3.18035018e+01 4.83420171e+01 25 -9.60651473e+01 -4.29291892e+01 1.05939884e+02 26 -4.18433863e+01 1.43501560e+02 -4.68432699e+01 27 6.18783816e+00 -1.46737365e+02 6.56308178e+01 28 -1.18586911e+02 8.65945785e+01 2.93781727e+01 29 -4.02413792e+01 -9.01666410e+01 6.52527700e+01 30 6.38583271e+01 1.07039948e+02 -4.02465198e+01 31 8.98105702e+01 -1.03883578e+02 1.00497249e+02 32 3.98244046e+01 1.01367863e+02 1.17123800e+02 ================================================================================ VALGRIND OUTPUT ================================================================================ ==88003== Memcheck, a memory error detector ==88003== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. ==88003== Using Valgrind-3.13.0 and LibVEX; rerun with -h for copyright info ==88003== Command: python runner2.py EAM_Dynamo_MarinicaVentelonGilbert_2013EAM3_W__MO_706622909913_000 ==88003== ==88003== Conditional jump or move depends on uninitialised value(s) ==88003== at 0x4FCBE77: __wcsnlen_avx2 (strlen-avx2.S:261) ==88003== by 0x4EF9EC1: wcsrtombs (wcsrtombs.c:104) ==88003== by 0x4E7FB20: wcstombs (wcstombs.c:34) ==88003== by 0x547A3F: ??? (in /usr/bin/python3.6) ==88003== by 0x63345D: _Py_stat (in /usr/bin/python3.6) ==88003== by 0x5BA640: ??? (in /usr/bin/python3.6) ==88003== by 0x551B80: ??? (in /usr/bin/python3.6) ==88003== by 0x5AA6EB: _PyObject_FastCallKeywords (in /usr/bin/python3.6) ==88003== by 0x50ABB2: ??? (in /usr/bin/python3.6) ==88003== by 0x50C5B8: _PyEval_EvalFrameDefault (in /usr/bin/python3.6) ==88003== by 0x509D47: ??? (in /usr/bin/python3.6) ==88003== by 0x50AA7C: ??? (in /usr/bin/python3.6) ==88003== ==88003== Conditional jump or move depends on uninitialised value(s) ==88003== at 0x4E63408: internal_utf8_loop (loop.c:298) ==88003== by 0x4E63408: __gconv_transform_internal_utf8 (skeleton.c:609) ==88003== by 0x4EF9EF4: wcsrtombs (wcsrtombs.c:110) ==88003== by 0x4E7FB20: wcstombs (wcstombs.c:34) ==88003== by 0x547A3F: ??? (in /usr/bin/python3.6) ==88003== by 0x63345D: _Py_stat (in /usr/bin/python3.6) ==88003== by 0x5BA640: ??? (in /usr/bin/python3.6) ==88003== by 0x551B80: ??? (in /usr/bin/python3.6) ==88003== by 0x5AA6EB: _PyObject_FastCallKeywords (in /usr/bin/python3.6) ==88003== by 0x50ABB2: ??? (in /usr/bin/python3.6) ==88003== by 0x50C5B8: _PyEval_EvalFrameDefault (in /usr/bin/python3.6) ==88003== by 0x509D47: ??? (in /usr/bin/python3.6) ==88003== by 0x50AA7C: ??? (in /usr/bin/python3.6) ==88003== ==88003== Conditional jump or move depends on uninitialised value(s) ==88003== at 0x4E63411: internal_utf8_loop (loop.c:303) ==88003== by 0x4E63411: __gconv_transform_internal_utf8 (skeleton.c:609) ==88003== by 0x4EF9EF4: wcsrtombs (wcsrtombs.c:110) ==88003== by 0x4E7FB20: wcstombs (wcstombs.c:34) ==88003== by 0x547A3F: ??? (in /usr/bin/python3.6) ==88003== by 0x63345D: _Py_stat (in /usr/bin/python3.6) ==88003== by 0x5BA640: ??? (in /usr/bin/python3.6) ==88003== by 0x551B80: ??? (in /usr/bin/python3.6) ==88003== by 0x5AA6EB: _PyObject_FastCallKeywords (in /usr/bin/python3.6) ==88003== by 0x50ABB2: ??? (in /usr/bin/python3.6) ==88003== by 0x50C5B8: _PyEval_EvalFrameDefault (in /usr/bin/python3.6) ==88003== by 0x509D47: ??? (in /usr/bin/python3.6) ==88003== by 0x50AA7C: ??? (in /usr/bin/python3.6) ==88003== ==88003== Conditional jump or move depends on uninitialised value(s) ==88003== at 0x4E63458: internal_utf8_loop (loop.c:298) ==88003== by 0x4E63458: __gconv_transform_internal_utf8 (skeleton.c:609) ==88003== by 0x4EF9EF4: wcsrtombs (wcsrtombs.c:110) ==88003== by 0x4E7FB20: wcstombs (wcstombs.c:34) ==88003== by 0x547A3F: ??? (in /usr/bin/python3.6) ==88003== by 0x63345D: _Py_stat (in /usr/bin/python3.6) ==88003== by 0x5BA640: ??? (in /usr/bin/python3.6) ==88003== by 0x551B80: ??? (in /usr/bin/python3.6) ==88003== by 0x5AA6EB: _PyObject_FastCallKeywords (in /usr/bin/python3.6) ==88003== by 0x50ABB2: ??? (in /usr/bin/python3.6) ==88003== by 0x50C5B8: _PyEval_EvalFrameDefault (in /usr/bin/python3.6) ==88003== by 0x509D47: ??? (in /usr/bin/python3.6) ==88003== by 0x50AA7C: ??? (in /usr/bin/python3.6) ==88003== ==88003== Conditional jump or move depends on uninitialised value(s) ==88003== at 0x4FCBCEC: __wcsnlen_avx2 (strlen-avx2.S:103) ==88003== by 0x4EF9EC1: wcsrtombs (wcsrtombs.c:104) ==88003== by 0x4E7FB20: wcstombs (wcstombs.c:34) ==88003== by 0x547A3F: ??? (in /usr/bin/python3.6) ==88003== by 0x547D20: PyUnicode_FSConverter (in /usr/bin/python3.6) ==88003== by 0x4C51E6: ??? (in /usr/bin/python3.6) ==88003== by 0x4F8388: ??? (in /usr/bin/python3.6) ==88003== by 0x4FBD83: ??? (in /usr/bin/python3.6) ==88003== by 0x4FC914: _PyArg_ParseStack_SizeT (in /usr/bin/python3.6) ==88003== by 0x4C6C88: ??? (in /usr/bin/python3.6) ==88003== by 0x50A9D9: ??? (in /usr/bin/python3.6) ==88003== by 0x50C5B8: _PyEval_EvalFrameDefault (in /usr/bin/python3.6) ==88003== ==88003== ==88003== HEAP SUMMARY: ==88003== in use at exit: 2,764,995 bytes in 1,647 blocks ==88003== total heap usage: 36,172 allocs, 34,525 frees, 177,111,796 bytes allocated ==88003== ==88003== LEAK SUMMARY: ==88003== definitely lost: 0 bytes in 0 blocks ==88003== indirectly lost: 0 bytes in 0 blocks ==88003== possibly lost: 146,155 bytes in 87 blocks ==88003== still reachable: 2,618,840 bytes in 1,560 blocks ==88003== suppressed: 0 bytes in 0 blocks ==88003== Rerun with --leak-check=full to see details of leaked memory ==88003== ==88003== For counts of detected and suppressed errors, rerun with: -v ==88003== Use --track-origins=yes to see where uninitialised values come from ==88003== ERROR SUMMARY: 6672 errors from 5 contexts (suppressed: 12345 from 658) ================================================================================ To pass this verification check the number of bytes that are "definitely lost" or "indirectly lost" must be zero. NOTE that Valgrind will typically report non-zero "possibly lost" bytes due to Python's internal memory allocation and garbage collection that it does not monitor. Full Valgrind output written to auxiliary file "valgrind.out" Grade: P Comment: No memory leak detected. === Verification check vc-memory-leak end (2020-04-05 20:59:14) ===