Enter a model name: === Verification check vc-memory-leak start (2020-04-05 21:07:20) === !!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!! !!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!! !!!!! !!!!! !!!!! VERIFICATION CHECK: vc-memory-leak !!!!! !!!!! !!!!! !!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!! !!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!! Description: Check that the model has no memory leaks. This is tested using the Valgrind memory debugging tool (http://valgrind.org) by performing a series of energy and force calculations on a randomly distorted face-centered cubic (FCC) cube base structure for both non-periodic and periodic boundary conditions. Separate configurations are tested for each species supported by the model, as well as one containing a random distribution of all species. Configurations used for testing are provided as auxiliary files. Author: Ellad Tadmor and Daniel S. Karls ----------------------------------------------------------------------------------------------------- Results for KIM Model : EAM_Dynamo_ZhouWadleyJohnson_2001NISTretabulation_W__MO_914556822329_000 Supported species : W random seed = 13 lattice constant (orig) = 3.000 perturbation amplitude = 0.300 number unit cells per side = 2 ----------------------------------------------------------------------------------------------------- MONOATOMIC STRUCTURE (pbc=False)-- Species = W (Configuration in file "config-F-W.xyz") ----------------------------------------------------------------------------------------------------- Energy = 329.3571002305523 Forces: 1 -1.54331235e+01 -3.19212671e+01 -3.32207456e+01 2 -3.38624344e+01 5.54086668e+01 -3.94581490e+01 3 5.40787307e+00 -2.14075663e+01 9.99473668e+00 4 -1.98429693e+01 2.33616652e+01 2.01555340e+01 5 4.93268259e+01 -7.29325985e+01 -1.22373159e+01 6 1.56368923e+01 5.63019097e+00 -2.57774348e+01 7 2.21389296e+01 -1.05730072e+02 -9.88124939e+01 8 -5.63936297e+01 -4.04734460e+01 2.21040974e+00 9 -4.39839949e+01 -2.52558950e+01 -6.60987892e+01 10 -1.72957468e+01 7.34693740e+01 -7.39471026e+01 11 -2.51620141e+01 -5.87985210e+01 5.01941067e+01 12 -3.55790851e+01 4.44007135e+01 1.94123064e+01 13 -2.03647213e+01 -4.42068981e+01 -1.53319536e+02 14 2.93869059e+01 3.63415524e+01 -2.68628520e+01 15 1.31061057e+02 -3.55116292e+01 2.39454191e+01 16 1.23419260e+01 1.07301404e+02 5.05552228e+01 17 -6.58113148e+01 -4.58767777e+01 -2.31691681e+01 18 5.15422153e+01 6.67112632e+01 -6.32619541e+01 19 2.35824860e+01 -7.67150669e+01 4.82319241e+01 20 -5.44371052e+01 2.62544808e+01 6.10372914e+01 21 -4.67065235e+01 -3.55794955e+01 2.36096491e+01 22 7.18283770e+01 8.24429363e+01 8.00405169e+01 23 1.67227814e+01 -7.44505775e+00 2.39810474e+01 24 1.91015341e+01 1.79067970e+01 2.52726444e+01 25 -4.24426045e+01 -2.51485285e+01 -1.46803044e+01 26 -1.93288642e+01 7.04595791e+01 -3.64000907e+01 27 5.11864038e+01 -1.14622863e+02 5.28235878e+01 28 -9.98990942e+01 8.95157218e+01 2.53180469e+01 29 -2.99191187e+01 -4.29331347e+01 2.65230995e+01 30 3.81276610e+01 5.87906789e+01 3.07488847e+01 31 5.64655811e+01 -2.64350210e+01 3.75940123e+01 32 3.26048942e+01 5.29988150e+01 5.55974964e+01 MONOATOMIC STRUCTURE (pbc=True)-- Species = W (Configuration in file "config-T-W.xyz") ----------------------------------------------------------------------------------------------------- Energy = 329.3571002305523 Forces: 1 -1.54331235e+01 -3.19212671e+01 -3.32207456e+01 2 -3.38624344e+01 5.54086668e+01 -3.94581490e+01 3 5.40787307e+00 -2.14075663e+01 9.99473668e+00 4 -1.98429693e+01 2.33616652e+01 2.01555340e+01 5 4.93268259e+01 -7.29325985e+01 -1.22373159e+01 6 1.56368923e+01 5.63019097e+00 -2.57774348e+01 7 2.21389296e+01 -1.05730072e+02 -9.88124939e+01 8 -5.63936297e+01 -4.04734460e+01 2.21040974e+00 9 -4.39839949e+01 -2.52558950e+01 -6.60987892e+01 10 -1.72957468e+01 7.34693740e+01 -7.39471026e+01 11 -2.51620141e+01 -5.87985210e+01 5.01941067e+01 12 -3.55790851e+01 4.44007135e+01 1.94123064e+01 13 -2.03647213e+01 -4.42068981e+01 -1.53319536e+02 14 2.93869059e+01 3.63415524e+01 -2.68628520e+01 15 1.31061057e+02 -3.55116292e+01 2.39454191e+01 16 1.23419260e+01 1.07301404e+02 5.05552228e+01 17 -6.58113148e+01 -4.58767777e+01 -2.31691681e+01 18 5.15422153e+01 6.67112632e+01 -6.32619541e+01 19 2.35824860e+01 -7.67150669e+01 4.82319241e+01 20 -5.44371052e+01 2.62544808e+01 6.10372914e+01 21 -4.67065235e+01 -3.55794955e+01 2.36096491e+01 22 7.18283770e+01 8.24429363e+01 8.00405169e+01 23 1.67227814e+01 -7.44505775e+00 2.39810474e+01 24 1.91015341e+01 1.79067970e+01 2.52726444e+01 25 -4.24426045e+01 -2.51485285e+01 -1.46803044e+01 26 -1.93288642e+01 7.04595791e+01 -3.64000907e+01 27 5.11864038e+01 -1.14622863e+02 5.28235878e+01 28 -9.98990942e+01 8.95157218e+01 2.53180469e+01 29 -2.99191187e+01 -4.29331347e+01 2.65230995e+01 30 3.81276610e+01 5.87906789e+01 3.07488847e+01 31 5.64655811e+01 -2.64350210e+01 3.75940123e+01 32 3.26048942e+01 5.29988150e+01 5.55974964e+01 ================================================================================ VALGRIND OUTPUT ================================================================================ ==93604== Memcheck, a memory error detector ==93604== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. ==93604== Using Valgrind-3.13.0 and LibVEX; rerun with -h for copyright info ==93604== Command: python runner2.py EAM_Dynamo_ZhouWadleyJohnson_2001NISTretabulation_W__MO_914556822329_000 ==93604== ==93604== Conditional jump or move depends on uninitialised value(s) ==93604== at 0x4FCBE77: __wcsnlen_avx2 (strlen-avx2.S:261) ==93604== by 0x4EF9EC1: wcsrtombs (wcsrtombs.c:104) ==93604== by 0x4E7FB20: wcstombs (wcstombs.c:34) ==93604== by 0x547A3F: ??? (in /usr/bin/python3.6) ==93604== by 0x63345D: _Py_stat (in /usr/bin/python3.6) ==93604== by 0x5BA640: ??? (in /usr/bin/python3.6) ==93604== by 0x551B80: ??? (in /usr/bin/python3.6) ==93604== by 0x5AA6EB: _PyObject_FastCallKeywords (in /usr/bin/python3.6) ==93604== by 0x50ABB2: ??? (in /usr/bin/python3.6) ==93604== by 0x50C5B8: _PyEval_EvalFrameDefault (in /usr/bin/python3.6) ==93604== by 0x509D47: ??? (in /usr/bin/python3.6) ==93604== by 0x50AA7C: ??? (in /usr/bin/python3.6) ==93604== ==93604== Conditional jump or move depends on uninitialised value(s) ==93604== at 0x4E63408: internal_utf8_loop (loop.c:298) ==93604== by 0x4E63408: __gconv_transform_internal_utf8 (skeleton.c:609) ==93604== by 0x4EF9EF4: wcsrtombs (wcsrtombs.c:110) ==93604== by 0x4E7FB20: wcstombs (wcstombs.c:34) ==93604== by 0x547A3F: ??? (in /usr/bin/python3.6) ==93604== by 0x63345D: _Py_stat (in /usr/bin/python3.6) ==93604== by 0x5BA640: ??? (in /usr/bin/python3.6) ==93604== by 0x551B80: ??? (in /usr/bin/python3.6) ==93604== by 0x5AA6EB: _PyObject_FastCallKeywords (in /usr/bin/python3.6) ==93604== by 0x50ABB2: ??? (in /usr/bin/python3.6) ==93604== by 0x50C5B8: _PyEval_EvalFrameDefault (in /usr/bin/python3.6) ==93604== by 0x509D47: ??? (in /usr/bin/python3.6) ==93604== by 0x50AA7C: ??? (in /usr/bin/python3.6) ==93604== ==93604== Conditional jump or move depends on uninitialised value(s) ==93604== at 0x4E63411: internal_utf8_loop (loop.c:303) ==93604== by 0x4E63411: __gconv_transform_internal_utf8 (skeleton.c:609) ==93604== by 0x4EF9EF4: wcsrtombs (wcsrtombs.c:110) ==93604== by 0x4E7FB20: wcstombs (wcstombs.c:34) ==93604== by 0x547A3F: ??? (in /usr/bin/python3.6) ==93604== by 0x63345D: _Py_stat (in /usr/bin/python3.6) ==93604== by 0x5BA640: ??? (in /usr/bin/python3.6) ==93604== by 0x551B80: ??? (in /usr/bin/python3.6) ==93604== by 0x5AA6EB: _PyObject_FastCallKeywords (in /usr/bin/python3.6) ==93604== by 0x50ABB2: ??? (in /usr/bin/python3.6) ==93604== by 0x50C5B8: _PyEval_EvalFrameDefault (in /usr/bin/python3.6) ==93604== by 0x509D47: ??? (in /usr/bin/python3.6) ==93604== by 0x50AA7C: ??? (in /usr/bin/python3.6) ==93604== ==93604== Conditional jump or move depends on uninitialised value(s) ==93604== at 0x4E63458: internal_utf8_loop (loop.c:298) ==93604== by 0x4E63458: __gconv_transform_internal_utf8 (skeleton.c:609) ==93604== by 0x4EF9EF4: wcsrtombs (wcsrtombs.c:110) ==93604== by 0x4E7FB20: wcstombs (wcstombs.c:34) ==93604== by 0x547A3F: ??? (in /usr/bin/python3.6) ==93604== by 0x63345D: _Py_stat (in /usr/bin/python3.6) ==93604== by 0x5BA640: ??? (in /usr/bin/python3.6) ==93604== by 0x551B80: ??? (in /usr/bin/python3.6) ==93604== by 0x5AA6EB: _PyObject_FastCallKeywords (in /usr/bin/python3.6) ==93604== by 0x50ABB2: ??? (in /usr/bin/python3.6) ==93604== by 0x50C5B8: _PyEval_EvalFrameDefault (in /usr/bin/python3.6) ==93604== by 0x509D47: ??? (in /usr/bin/python3.6) ==93604== by 0x50AA7C: ??? (in /usr/bin/python3.6) ==93604== ==93604== Conditional jump or move depends on uninitialised value(s) ==93604== at 0x4FCBCEC: __wcsnlen_avx2 (strlen-avx2.S:103) ==93604== by 0x4EF9EC1: wcsrtombs (wcsrtombs.c:104) ==93604== by 0x4E7FB20: wcstombs (wcstombs.c:34) ==93604== by 0x547A3F: ??? (in /usr/bin/python3.6) ==93604== by 0x547D20: PyUnicode_FSConverter (in /usr/bin/python3.6) ==93604== by 0x4C51E6: ??? (in /usr/bin/python3.6) ==93604== by 0x4F8388: ??? (in /usr/bin/python3.6) ==93604== by 0x4FBD83: ??? (in /usr/bin/python3.6) ==93604== by 0x4FC914: _PyArg_ParseStack_SizeT (in /usr/bin/python3.6) ==93604== by 0x4C6C88: ??? (in /usr/bin/python3.6) ==93604== by 0x50A9D9: ??? (in /usr/bin/python3.6) ==93604== by 0x50C5B8: _PyEval_EvalFrameDefault (in /usr/bin/python3.6) ==93604== ==93604== ==93604== HEAP SUMMARY: ==93604== in use at exit: 2,764,995 bytes in 1,647 blocks ==93604== total heap usage: 36,172 allocs, 34,525 frees, 64,216,837 bytes allocated ==93604== ==93604== LEAK SUMMARY: ==93604== definitely lost: 0 bytes in 0 blocks ==93604== indirectly lost: 0 bytes in 0 blocks ==93604== possibly lost: 146,155 bytes in 87 blocks ==93604== still reachable: 2,618,840 bytes in 1,560 blocks ==93604== suppressed: 0 bytes in 0 blocks ==93604== Rerun with --leak-check=full to see details of leaked memory ==93604== ==93604== For counts of detected and suppressed errors, rerun with: -v ==93604== Use --track-origins=yes to see where uninitialised values come from ==93604== ERROR SUMMARY: 6672 errors from 5 contexts (suppressed: 11155 from 668) ================================================================================ To pass this verification check the number of bytes that are "definitely lost" or "indirectly lost" must be zero. NOTE that Valgrind will typically report non-zero "possibly lost" bytes due to Python's internal memory allocation and garbage collection that it does not monitor. Full Valgrind output written to auxiliary file "valgrind.out" Grade: P Comment: No memory leak detected. === Verification check vc-memory-leak end (2020-04-05 21:08:01) ===