Enter a model name: === Verification check vc-memory-leak start (2020-04-05 21:24:45) === !!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!! !!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!! !!!!! !!!!! !!!!! VERIFICATION CHECK: vc-memory-leak !!!!! !!!!! !!!!! !!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!! !!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!! Description: Check that the model has no memory leaks. This is tested using the Valgrind memory debugging tool (http://valgrind.org) by performing a series of energy and force calculations on a randomly distorted face-centered cubic (FCC) cube base structure for both non-periodic and periodic boundary conditions. Separate configurations are tested for each species supported by the model, as well as one containing a random distribution of all species. Configurations used for testing are provided as auxiliary files. Author: Ellad Tadmor and Daniel S. Karls ----------------------------------------------------------------------------------------------------- Results for KIM Model : Sim_LAMMPS_MEAM_AsadiZaeemNouranian_2015_Ni__SM_078420412697_000 Supported species : Ni random seed = 13 lattice constant (orig) = 3.000 perturbation amplitude = 0.300 number unit cells per side = 2 ----------------------------------------------------------------------------------------------------- MONOATOMIC STRUCTURE (pbc=False)-- Species = Ni (Configuration in file "config-F-Ni.xyz") ----------------------------------------------------------------------------------------------------- Energy = -23.81239373927567 Forces: 1 -5.67124900e+00 -5.53867787e+00 -1.02946001e+01 2 -1.13936202e+01 1.85518699e+01 -6.65103679e+00 3 1.12207631e+01 -8.83730880e+00 -1.07023794e+00 4 -5.55988405e+00 7.37514264e+00 2.42970118e+00 5 1.27928809e+01 -2.04969803e+01 2.64650175e+00 6 1.69362154e+00 1.31915998e+00 -2.62583994e+00 7 1.18412872e+00 -2.76901454e+01 -3.07734446e+01 8 -1.21741826e+01 -8.19519141e+00 -3.24305522e+00 9 -5.94995077e+00 -4.97651693e+00 -9.08712387e+00 10 -7.90755783e+00 1.66309418e+01 -1.60151082e+01 11 -1.93421385e+01 -1.42726708e+01 1.43316802e+01 12 -4.39286141e+00 8.07738276e+00 3.17860001e+00 13 1.38711074e+00 -1.06449482e+01 -4.27932588e+01 14 4.15414109e+00 6.80663436e+00 -3.94907690e+00 15 3.05786796e+01 -3.16975022e+00 1.73898840e+01 16 9.66583631e+00 2.38571814e+01 1.51018626e+01 17 -1.30277851e+01 -6.06527947e+00 -4.96974991e-01 18 6.04686745e+00 9.11659754e+00 -2.76721483e+00 19 3.74296481e+00 -8.47085798e+00 7.27585449e+00 20 -3.94522058e+00 6.41009044e+00 5.64789364e+00 21 -1.14117370e+01 -1.14546742e+01 6.15356365e+00 22 2.08941925e+01 2.60882061e+01 2.31638867e+01 23 3.42335905e+00 -2.23089862e+00 3.74712291e+00 24 -1.59473506e-02 4.94503150e+00 4.76331857e+00 25 -3.93220920e+00 -5.84525883e+00 -1.24693974e+00 26 -4.01754735e+00 9.70623909e+00 -8.33784991e+00 27 2.04902291e+01 -3.41984011e+01 5.98516554e+00 28 -3.11071834e+01 2.81144209e+01 6.94085249e+00 29 -6.25662850e+00 -5.73660911e+00 4.26379854e+00 30 5.68895854e+00 1.18047037e+01 -7.10153592e+00 31 7.42683833e+00 -1.18720043e+01 1.16911265e+01 32 5.71513104e+00 1.08925714e+01 1.17424849e+01 MONOATOMIC STRUCTURE (pbc=True)-- Species = Ni (Configuration in file "config-T-Ni.xyz") ----------------------------------------------------------------------------------------------------- Energy = -23.81239373927567 Forces: 1 -5.67124900e+00 -5.53867787e+00 -1.02946001e+01 2 -1.13936202e+01 1.85518699e+01 -6.65103679e+00 3 1.12207631e+01 -8.83730880e+00 -1.07023794e+00 4 -5.55988405e+00 7.37514264e+00 2.42970118e+00 5 1.27928809e+01 -2.04969803e+01 2.64650175e+00 6 1.69362154e+00 1.31915998e+00 -2.62583994e+00 7 1.18412872e+00 -2.76901454e+01 -3.07734446e+01 8 -1.21741826e+01 -8.19519141e+00 -3.24305522e+00 9 -5.94995077e+00 -4.97651693e+00 -9.08712387e+00 10 -7.90755783e+00 1.66309418e+01 -1.60151082e+01 11 -1.93421385e+01 -1.42726708e+01 1.43316802e+01 12 -4.39286141e+00 8.07738276e+00 3.17860001e+00 13 1.38711074e+00 -1.06449482e+01 -4.27932588e+01 14 4.15414109e+00 6.80663436e+00 -3.94907690e+00 15 3.05786796e+01 -3.16975022e+00 1.73898840e+01 16 9.66583631e+00 2.38571814e+01 1.51018626e+01 17 -1.30277851e+01 -6.06527947e+00 -4.96974991e-01 18 6.04686745e+00 9.11659754e+00 -2.76721483e+00 19 3.74296481e+00 -8.47085798e+00 7.27585449e+00 20 -3.94522058e+00 6.41009044e+00 5.64789364e+00 21 -1.14117370e+01 -1.14546742e+01 6.15356365e+00 22 2.08941925e+01 2.60882061e+01 2.31638867e+01 23 3.42335905e+00 -2.23089862e+00 3.74712291e+00 24 -1.59473506e-02 4.94503150e+00 4.76331857e+00 25 -3.93220920e+00 -5.84525883e+00 -1.24693974e+00 26 -4.01754735e+00 9.70623909e+00 -8.33784991e+00 27 2.04902291e+01 -3.41984011e+01 5.98516554e+00 28 -3.11071834e+01 2.81144209e+01 6.94085249e+00 29 -6.25662850e+00 -5.73660911e+00 4.26379854e+00 30 5.68895854e+00 1.18047037e+01 -7.10153592e+00 31 7.42683833e+00 -1.18720043e+01 1.16911265e+01 32 5.71513104e+00 1.08925714e+01 1.17424849e+01 ================================================================================ VALGRIND OUTPUT ================================================================================ ==4368== Memcheck, a memory error detector ==4368== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. ==4368== Using Valgrind-3.13.0 and LibVEX; rerun with -h for copyright info ==4368== Command: python runner2.py Sim_LAMMPS_MEAM_AsadiZaeemNouranian_2015_Ni__SM_078420412697_000 ==4368== ==4368== Conditional jump or move depends on uninitialised value(s) ==4368== at 0x4FCBE77: __wcsnlen_avx2 (strlen-avx2.S:261) ==4368== by 0x4EF9EC1: wcsrtombs (wcsrtombs.c:104) ==4368== by 0x4E7FB20: wcstombs (wcstombs.c:34) ==4368== by 0x547A3F: ??? (in /usr/bin/python3.6) ==4368== by 0x63345D: _Py_stat (in /usr/bin/python3.6) ==4368== by 0x5BA640: ??? (in /usr/bin/python3.6) ==4368== by 0x551B80: ??? (in /usr/bin/python3.6) ==4368== by 0x5AA6EB: _PyObject_FastCallKeywords (in /usr/bin/python3.6) ==4368== by 0x50ABB2: ??? (in /usr/bin/python3.6) ==4368== by 0x50C5B8: _PyEval_EvalFrameDefault (in /usr/bin/python3.6) ==4368== by 0x509D47: ??? (in /usr/bin/python3.6) ==4368== by 0x50AA7C: ??? (in /usr/bin/python3.6) ==4368== ==4368== Conditional jump or move depends on uninitialised value(s) ==4368== at 0x4E63408: internal_utf8_loop (loop.c:298) ==4368== by 0x4E63408: __gconv_transform_internal_utf8 (skeleton.c:609) ==4368== by 0x4EF9EF4: wcsrtombs (wcsrtombs.c:110) ==4368== by 0x4E7FB20: wcstombs (wcstombs.c:34) ==4368== by 0x547A3F: ??? (in /usr/bin/python3.6) ==4368== by 0x63345D: _Py_stat (in /usr/bin/python3.6) ==4368== by 0x5BA640: ??? (in /usr/bin/python3.6) ==4368== by 0x551B80: ??? (in /usr/bin/python3.6) ==4368== by 0x5AA6EB: _PyObject_FastCallKeywords (in /usr/bin/python3.6) ==4368== by 0x50ABB2: ??? (in /usr/bin/python3.6) ==4368== by 0x50C5B8: _PyEval_EvalFrameDefault (in /usr/bin/python3.6) ==4368== by 0x509D47: ??? (in /usr/bin/python3.6) ==4368== by 0x50AA7C: ??? (in /usr/bin/python3.6) ==4368== ==4368== Conditional jump or move depends on uninitialised value(s) ==4368== at 0x4E63411: internal_utf8_loop (loop.c:303) ==4368== by 0x4E63411: __gconv_transform_internal_utf8 (skeleton.c:609) ==4368== by 0x4EF9EF4: wcsrtombs (wcsrtombs.c:110) ==4368== by 0x4E7FB20: wcstombs (wcstombs.c:34) ==4368== by 0x547A3F: ??? (in /usr/bin/python3.6) ==4368== by 0x63345D: _Py_stat (in /usr/bin/python3.6) ==4368== by 0x5BA640: ??? (in /usr/bin/python3.6) ==4368== by 0x551B80: ??? (in /usr/bin/python3.6) ==4368== by 0x5AA6EB: _PyObject_FastCallKeywords (in /usr/bin/python3.6) ==4368== by 0x50ABB2: ??? (in /usr/bin/python3.6) ==4368== by 0x50C5B8: _PyEval_EvalFrameDefault (in /usr/bin/python3.6) ==4368== by 0x509D47: ??? (in /usr/bin/python3.6) ==4368== by 0x50AA7C: ??? (in /usr/bin/python3.6) ==4368== ==4368== Conditional jump or move depends on uninitialised value(s) ==4368== at 0x4E63458: internal_utf8_loop (loop.c:298) ==4368== by 0x4E63458: __gconv_transform_internal_utf8 (skeleton.c:609) ==4368== by 0x4EF9EF4: wcsrtombs (wcsrtombs.c:110) ==4368== by 0x4E7FB20: wcstombs (wcstombs.c:34) ==4368== by 0x547A3F: ??? (in /usr/bin/python3.6) ==4368== by 0x63345D: _Py_stat (in /usr/bin/python3.6) ==4368== by 0x5BA640: ??? (in /usr/bin/python3.6) ==4368== by 0x551B80: ??? (in /usr/bin/python3.6) ==4368== by 0x5AA6EB: _PyObject_FastCallKeywords (in /usr/bin/python3.6) ==4368== by 0x50ABB2: ??? (in /usr/bin/python3.6) ==4368== by 0x50C5B8: _PyEval_EvalFrameDefault (in /usr/bin/python3.6) ==4368== by 0x509D47: ??? (in /usr/bin/python3.6) ==4368== by 0x50AA7C: ??? (in /usr/bin/python3.6) ==4368== ==4368== Conditional jump or move depends on uninitialised value(s) ==4368== at 0x4FCBCEC: __wcsnlen_avx2 (strlen-avx2.S:103) ==4368== by 0x4EF9EC1: wcsrtombs (wcsrtombs.c:104) ==4368== by 0x4E7FB20: wcstombs (wcstombs.c:34) ==4368== by 0x547A3F: ??? (in /usr/bin/python3.6) ==4368== by 0x547D20: PyUnicode_FSConverter (in /usr/bin/python3.6) ==4368== by 0x4C51E6: ??? (in /usr/bin/python3.6) ==4368== by 0x4F8388: ??? (in /usr/bin/python3.6) ==4368== by 0x4FBD83: ??? (in /usr/bin/python3.6) ==4368== by 0x4FC914: _PyArg_ParseStack_SizeT (in /usr/bin/python3.6) ==4368== by 0x4C6C88: ??? (in /usr/bin/python3.6) ==4368== by 0x50A9D9: ??? (in /usr/bin/python3.6) ==4368== by 0x50C5B8: _PyEval_EvalFrameDefault (in /usr/bin/python3.6) ==4368== --4368-- Warning: DWARF2 CFI reader: unhandled DW_OP_ opcode 0x13 --4368-- Warning: DWARF2 CFI reader: unhandled DW_OP_ opcode 0x13 --4368-- Warning: DWARF2 CFI reader: unhandled DW_OP_ opcode 0x13 --4368-- Warning: DWARF2 CFI reader: unhandled DW_OP_ opcode 0x13 --4368-- Warning: DWARF2 CFI reader: unhandled DW_OP_ opcode 0x13 --4368-- Warning: DWARF2 CFI reader: unhandled DW_OP_ opcode 0x13 --4368-- Warning: DWARF2 CFI reader: unhandled DW_OP_ opcode 0x13 --4368-- Warning: DWARF2 CFI reader: unhandled DW_OP_ opcode 0x13 --4368-- Warning: DWARF2 CFI reader: unhandled DW_OP_ opcode 0x13 --4368-- Warning: DWARF2 CFI reader: unhandled DW_OP_ opcode 0x13 --4368-- Warning: DWARF2 CFI reader: unhandled DW_OP_ opcode 0x13 --4368-- Warning: DWARF2 CFI reader: unhandled DW_OP_ opcode 0x13 --4368-- Warning: DWARF2 CFI reader: unhandled DW_OP_ opcode 0x13 --4368-- Warning: DWARF2 CFI reader: unhandled DW_OP_ opcode 0x13 --4368-- Warning: DWARF2 CFI reader: unhandled DW_OP_ opcode 0x13 --4368-- Warning: DWARF2 CFI reader: unhandled DW_OP_ opcode 0x13 --4368-- Warning: DWARF2 CFI reader: unhandled DW_OP_ opcode 0x13 --4368-- Warning: DWARF2 CFI reader: unhandled DW_OP_ opcode 0x13 --4368-- Warning: DWARF2 CFI reader: unhandled DW_OP_ opcode 0x13 --4368-- Warning: DWARF2 CFI reader: unhandled DW_OP_ opcode 0x13 --4368-- Warning: DWARF2 CFI reader: unhandled DW_OP_ opcode 0x13 --4368-- Warning: DWARF2 CFI reader: unhandled DW_OP_ opcode 0x13 --4368-- Warning: DWARF2 CFI reader: unhandled DW_OP_ opcode 0x13 --4368-- Warning: DWARF2 CFI reader: unhandled DW_OP_ opcode 0x13 --4368-- Warning: DWARF2 CFI reader: unhandled DW_OP_ opcode 0x13 --4368-- Warning: DWARF2 CFI reader: unhandled DW_OP_ opcode 0x13 --4368-- Warning: DWARF2 CFI reader: unhandled DW_OP_ opcode 0x13 --4368-- Warning: DWARF2 CFI reader: unhandled DW_OP_ opcode 0x13 --4368-- Warning: DWARF2 CFI reader: unhandled DW_OP_ opcode 0x13 --4368-- Warning: DWARF2 CFI reader: unhandled DW_OP_ opcode 0x13 --4368-- Warning: DWARF2 CFI reader: unhandled DW_OP_ opcode 0x13 --4368-- Warning: DWARF2 CFI reader: unhandled DW_OP_ opcode 0x13 --4368-- Warning: DWARF2 CFI reader: unhandled DW_OP_ opcode 0x13 --4368-- Warning: DWARF2 CFI reader: unhandled DW_OP_ opcode 0x13 --4368-- Warning: DWARF2 CFI reader: unhandled DW_OP_ opcode 0x13 --4368-- Warning: DWARF2 CFI reader: unhandled DW_OP_ opcode 0x13 --4368-- Warning: DWARF2 CFI reader: unhandled DW_OP_ opcode 0x13 --4368-- Warning: DWARF2 CFI reader: unhandled DW_OP_ opcode 0x13 --4368-- Warning: DWARF2 CFI reader: unhandled DW_OP_ opcode 0x13 --4368-- Warning: DWARF2 CFI reader: unhandled DW_OP_ opcode 0x13 --4368-- Warning: DWARF2 CFI reader: unhandled DW_OP_ opcode 0x13 --4368-- Warning: DWARF2 CFI reader: unhandled DW_OP_ opcode 0x13 --4368-- Warning: DWARF2 CFI reader: unhandled DW_OP_ opcode 0x13 --4368-- Warning: DWARF2 CFI reader: unhandled DW_OP_ opcode 0x13 --4368-- Warning: DWARF2 CFI reader: unhandled DW_OP_ opcode 0x13 --4368-- Warning: DWARF2 CFI reader: unhandled DW_OP_ opcode 0x13 --4368-- Warning: DWARF2 CFI reader: unhandled DW_OP_ opcode 0x13 --4368-- Warning: DWARF2 CFI reader: unhandled DW_OP_ opcode 0x13 ==4368== ==4368== HEAP SUMMARY: ==4368== in use at exit: 3,062,509 bytes in 1,951 blocks ==4368== total heap usage: 46,878 allocs, 44,927 frees, 93,110,175 bytes allocated ==4368== ==4368== LEAK SUMMARY: ==4368== definitely lost: 0 bytes in 0 blocks ==4368== indirectly lost: 0 bytes in 0 blocks ==4368== possibly lost: 151,315 bytes in 96 blocks ==4368== still reachable: 2,911,194 bytes in 1,855 blocks ==4368== suppressed: 0 bytes in 0 blocks ==4368== Rerun with --leak-check=full to see details of leaked memory ==4368== ==4368== For counts of detected and suppressed errors, rerun with: -v ==4368== Use --track-origins=yes to see where uninitialised values come from ==4368== ERROR SUMMARY: 6672 errors from 5 contexts (suppressed: 12291 from 670) ================================================================================ To pass this verification check the number of bytes that are "definitely lost" or "indirectly lost" must be zero. NOTE that Valgrind will typically report non-zero "possibly lost" bytes due to Python's internal memory allocation and garbage collection that it does not monitor. Full Valgrind output written to auxiliary file "valgrind.out" Grade: P Comment: No memory leak detected. === Verification check vc-memory-leak end (2020-04-05 21:25:32) ===