Enter a model name: === Verification check vc-memory-leak start (2020-04-05 21:30:37) === !!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!! !!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!! !!!!! !!!!! !!!!! VERIFICATION CHECK: vc-memory-leak !!!!! !!!!! !!!!! !!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!! !!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!! Description: Check that the model has no memory leaks. This is tested using the Valgrind memory debugging tool (http://valgrind.org) by performing a series of energy and force calculations on a randomly distorted face-centered cubic (FCC) cube base structure for both non-periodic and periodic boundary conditions. Separate configurations are tested for each species supported by the model, as well as one containing a random distribution of all species. Configurations used for testing are provided as auxiliary files. Author: Ellad Tadmor and Daniel S. Karls ----------------------------------------------------------------------------------------------------- Results for KIM Model : Sim_LAMMPS_MEAM_Wagner_2007_Ni__SM_168413969663_000 Supported species : Ni random seed = 13 lattice constant (orig) = 3.000 perturbation amplitude = 0.300 number unit cells per side = 2 ----------------------------------------------------------------------------------------------------- MONOATOMIC STRUCTURE (pbc=False)-- Species = Ni (Configuration in file "config-F-Ni.xyz") ----------------------------------------------------------------------------------------------------- Energy = 3332.3300252755776 Forces: 1 1.24536312e+02 5.59117250e+01 -1.46753954e+02 2 -2.13884989e+02 6.92361027e+01 -1.22543108e+02 3 -2.42728128e+02 -3.18396576e+02 4.51373190e+02 4 -1.26055221e+02 1.17682408e+02 8.51248680e+01 5 9.20811258e+01 -8.22181453e+01 -1.23537899e+01 6 -2.79719364e+01 2.24473171e+01 2.45272024e+00 7 1.49392235e+02 -2.70520384e+02 -1.08345218e+02 8 -2.14288369e+02 -2.25026668e+02 2.07452066e+02 9 -1.21994187e+01 -1.03289536e+02 -8.10525176e+01 10 -5.91732471e+01 7.08373816e+01 -1.71460535e+01 11 5.50282149e+01 1.85134169e+01 4.01256211e+01 12 1.77018406e+01 1.98205330e+01 6.04202870e+01 13 -1.20747676e+04 -8.49175686e+03 -2.74749760e+02 14 1.21550058e+04 8.41421217e+03 1.89243277e+02 15 2.62043336e+02 3.57572891e+02 -2.21187529e+01 16 -1.70358853e+01 3.21929095e+01 2.70090237e+01 17 -3.80904376e+03 4.17871892e+03 1.88199267e+03 18 3.65684138e+02 3.87292111e+02 6.78473923e+01 19 7.48588167e+03 -3.03700454e+03 1.04224069e+03 20 -3.75466139e+03 -1.28117007e+03 -3.45315929e+03 21 -3.37323285e+02 -9.89527734e+02 -1.94335393e+03 22 -1.68898964e+02 1.69991867e+02 -4.69254189e+01 23 -7.08657443e+02 1.34779950e+03 9.37503394e+02 24 1.04654690e+03 -3.50551900e+02 1.03085581e+03 25 -2.64050152e+04 2.80183499e+04 7.38484591e+03 26 -4.44047009e+01 2.12134059e+01 3.17658102e+01 27 3.97651473e+04 -1.21099953e+04 3.92298518e+04 28 -1.33315214e+04 -1.59847942e+04 -4.64341569e+04 29 3.13657576e+01 -2.95421667e+01 6.61981953e+00 30 3.17672209e+01 2.78233338e+01 -1.04096323e+02 31 -5.94371295e+00 -1.08598343e+02 3.93251344e+01 32 -2.86071223e+01 5.27765004e+01 5.07054862e+01 MONOATOMIC STRUCTURE (pbc=True)-- Species = Ni (Configuration in file "config-T-Ni.xyz") ----------------------------------------------------------------------------------------------------- Energy = 3332.3300252755776 Forces: 1 1.24536312e+02 5.59117250e+01 -1.46753954e+02 2 -2.13884989e+02 6.92361027e+01 -1.22543108e+02 3 -2.42728128e+02 -3.18396576e+02 4.51373190e+02 4 -1.26055221e+02 1.17682408e+02 8.51248680e+01 5 9.20811258e+01 -8.22181453e+01 -1.23537899e+01 6 -2.79719364e+01 2.24473171e+01 2.45272024e+00 7 1.49392235e+02 -2.70520384e+02 -1.08345218e+02 8 -2.14288369e+02 -2.25026668e+02 2.07452066e+02 9 -1.21994187e+01 -1.03289536e+02 -8.10525176e+01 10 -5.91732471e+01 7.08373816e+01 -1.71460535e+01 11 5.50282149e+01 1.85134169e+01 4.01256211e+01 12 1.77018406e+01 1.98205330e+01 6.04202870e+01 13 -1.20747676e+04 -8.49175686e+03 -2.74749760e+02 14 1.21550058e+04 8.41421217e+03 1.89243277e+02 15 2.62043336e+02 3.57572891e+02 -2.21187529e+01 16 -1.70358853e+01 3.21929095e+01 2.70090237e+01 17 -3.80904376e+03 4.17871892e+03 1.88199267e+03 18 3.65684138e+02 3.87292111e+02 6.78473923e+01 19 7.48588167e+03 -3.03700454e+03 1.04224069e+03 20 -3.75466139e+03 -1.28117007e+03 -3.45315929e+03 21 -3.37323285e+02 -9.89527734e+02 -1.94335393e+03 22 -1.68898964e+02 1.69991867e+02 -4.69254189e+01 23 -7.08657443e+02 1.34779950e+03 9.37503394e+02 24 1.04654690e+03 -3.50551900e+02 1.03085581e+03 25 -2.64050152e+04 2.80183499e+04 7.38484591e+03 26 -4.44047009e+01 2.12134059e+01 3.17658102e+01 27 3.97651473e+04 -1.21099953e+04 3.92298518e+04 28 -1.33315214e+04 -1.59847942e+04 -4.64341569e+04 29 3.13657576e+01 -2.95421667e+01 6.61981953e+00 30 3.17672209e+01 2.78233338e+01 -1.04096323e+02 31 -5.94371295e+00 -1.08598343e+02 3.93251344e+01 32 -2.86071223e+01 5.27765004e+01 5.07054862e+01 ================================================================================ VALGRIND OUTPUT ================================================================================ ==5650== Memcheck, a memory error detector ==5650== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. ==5650== Using Valgrind-3.13.0 and LibVEX; rerun with -h for copyright info ==5650== Command: python runner2.py Sim_LAMMPS_MEAM_Wagner_2007_Ni__SM_168413969663_000 ==5650== ==5650== Conditional jump or move depends on uninitialised value(s) ==5650== at 0x4FCBE77: __wcsnlen_avx2 (strlen-avx2.S:261) ==5650== by 0x4EF9EC1: wcsrtombs (wcsrtombs.c:104) ==5650== by 0x4E7FB20: wcstombs (wcstombs.c:34) ==5650== by 0x547A3F: ??? (in /usr/bin/python3.6) ==5650== by 0x63345D: _Py_stat (in /usr/bin/python3.6) ==5650== by 0x5BA640: ??? (in /usr/bin/python3.6) ==5650== by 0x551B80: ??? (in /usr/bin/python3.6) ==5650== by 0x5AA6EB: _PyObject_FastCallKeywords (in /usr/bin/python3.6) ==5650== by 0x50ABB2: ??? (in /usr/bin/python3.6) ==5650== by 0x50C5B8: _PyEval_EvalFrameDefault (in /usr/bin/python3.6) ==5650== by 0x509D47: ??? (in /usr/bin/python3.6) ==5650== by 0x50AA7C: ??? (in /usr/bin/python3.6) ==5650== ==5650== Conditional jump or move depends on uninitialised value(s) ==5650== at 0x4E63408: internal_utf8_loop (loop.c:298) ==5650== by 0x4E63408: __gconv_transform_internal_utf8 (skeleton.c:609) ==5650== by 0x4EF9EF4: wcsrtombs (wcsrtombs.c:110) ==5650== by 0x4E7FB20: wcstombs (wcstombs.c:34) ==5650== by 0x547A3F: ??? (in /usr/bin/python3.6) ==5650== by 0x63345D: _Py_stat (in /usr/bin/python3.6) ==5650== by 0x5BA640: ??? (in /usr/bin/python3.6) ==5650== by 0x551B80: ??? (in /usr/bin/python3.6) ==5650== by 0x5AA6EB: _PyObject_FastCallKeywords (in /usr/bin/python3.6) ==5650== by 0x50ABB2: ??? (in /usr/bin/python3.6) ==5650== by 0x50C5B8: _PyEval_EvalFrameDefault (in /usr/bin/python3.6) ==5650== by 0x509D47: ??? (in /usr/bin/python3.6) ==5650== by 0x50AA7C: ??? (in /usr/bin/python3.6) ==5650== ==5650== Conditional jump or move depends on uninitialised value(s) ==5650== at 0x4E63411: internal_utf8_loop (loop.c:303) ==5650== by 0x4E63411: __gconv_transform_internal_utf8 (skeleton.c:609) ==5650== by 0x4EF9EF4: wcsrtombs (wcsrtombs.c:110) ==5650== by 0x4E7FB20: wcstombs (wcstombs.c:34) ==5650== by 0x547A3F: ??? (in /usr/bin/python3.6) ==5650== by 0x63345D: _Py_stat (in /usr/bin/python3.6) ==5650== by 0x5BA640: ??? (in /usr/bin/python3.6) ==5650== by 0x551B80: ??? (in /usr/bin/python3.6) ==5650== by 0x5AA6EB: _PyObject_FastCallKeywords (in /usr/bin/python3.6) ==5650== by 0x50ABB2: ??? (in /usr/bin/python3.6) ==5650== by 0x50C5B8: _PyEval_EvalFrameDefault (in /usr/bin/python3.6) ==5650== by 0x509D47: ??? (in /usr/bin/python3.6) ==5650== by 0x50AA7C: ??? (in /usr/bin/python3.6) ==5650== ==5650== Conditional jump or move depends on uninitialised value(s) ==5650== at 0x4E63458: internal_utf8_loop (loop.c:298) ==5650== by 0x4E63458: __gconv_transform_internal_utf8 (skeleton.c:609) ==5650== by 0x4EF9EF4: wcsrtombs (wcsrtombs.c:110) ==5650== by 0x4E7FB20: wcstombs (wcstombs.c:34) ==5650== by 0x547A3F: ??? (in /usr/bin/python3.6) ==5650== by 0x63345D: _Py_stat (in /usr/bin/python3.6) ==5650== by 0x5BA640: ??? (in /usr/bin/python3.6) ==5650== by 0x551B80: ??? (in /usr/bin/python3.6) ==5650== by 0x5AA6EB: _PyObject_FastCallKeywords (in /usr/bin/python3.6) ==5650== by 0x50ABB2: ??? (in /usr/bin/python3.6) ==5650== by 0x50C5B8: _PyEval_EvalFrameDefault (in /usr/bin/python3.6) ==5650== by 0x509D47: ??? (in /usr/bin/python3.6) ==5650== by 0x50AA7C: ??? (in /usr/bin/python3.6) ==5650== ==5650== Conditional jump or move depends on uninitialised value(s) ==5650== at 0x4FCBCEC: __wcsnlen_avx2 (strlen-avx2.S:103) ==5650== by 0x4EF9EC1: wcsrtombs (wcsrtombs.c:104) ==5650== by 0x4E7FB20: wcstombs (wcstombs.c:34) ==5650== by 0x547A3F: ??? (in /usr/bin/python3.6) ==5650== by 0x547D20: PyUnicode_FSConverter (in /usr/bin/python3.6) ==5650== by 0x4CAD31: ??? (in /usr/bin/python3.6) ==5650== by 0x551B80: ??? (in /usr/bin/python3.6) ==5650== by 0x5AA6EB: _PyObject_FastCallKeywords (in /usr/bin/python3.6) ==5650== by 0x50ABB2: ??? (in /usr/bin/python3.6) ==5650== by 0x50C5B8: _PyEval_EvalFrameDefault (in /usr/bin/python3.6) ==5650== by 0x509D47: ??? (in /usr/bin/python3.6) ==5650== by 0x50AA7C: ??? (in /usr/bin/python3.6) ==5650== --5650-- Warning: DWARF2 CFI reader: unhandled DW_OP_ opcode 0x13 --5650-- Warning: DWARF2 CFI reader: unhandled DW_OP_ opcode 0x13 --5650-- Warning: DWARF2 CFI reader: unhandled DW_OP_ opcode 0x13 --5650-- Warning: DWARF2 CFI reader: unhandled DW_OP_ opcode 0x13 --5650-- Warning: DWARF2 CFI reader: unhandled DW_OP_ opcode 0x13 --5650-- Warning: DWARF2 CFI reader: unhandled DW_OP_ opcode 0x13 --5650-- Warning: DWARF2 CFI reader: unhandled DW_OP_ opcode 0x13 --5650-- Warning: DWARF2 CFI reader: unhandled DW_OP_ opcode 0x13 --5650-- Warning: DWARF2 CFI reader: unhandled DW_OP_ opcode 0x13 --5650-- Warning: DWARF2 CFI reader: unhandled DW_OP_ opcode 0x13 --5650-- Warning: DWARF2 CFI reader: unhandled DW_OP_ opcode 0x13 --5650-- Warning: DWARF2 CFI reader: unhandled DW_OP_ opcode 0x13 --5650-- Warning: DWARF2 CFI reader: unhandled DW_OP_ opcode 0x13 --5650-- Warning: DWARF2 CFI reader: unhandled DW_OP_ opcode 0x13 --5650-- Warning: DWARF2 CFI reader: unhandled DW_OP_ opcode 0x13 --5650-- Warning: DWARF2 CFI reader: unhandled DW_OP_ opcode 0x13 --5650-- Warning: DWARF2 CFI reader: unhandled DW_OP_ opcode 0x13 --5650-- Warning: DWARF2 CFI reader: unhandled DW_OP_ opcode 0x13 --5650-- Warning: DWARF2 CFI reader: unhandled DW_OP_ opcode 0x13 --5650-- Warning: DWARF2 CFI reader: unhandled DW_OP_ opcode 0x13 --5650-- Warning: DWARF2 CFI reader: unhandled DW_OP_ opcode 0x13 --5650-- Warning: DWARF2 CFI reader: unhandled DW_OP_ opcode 0x13 --5650-- Warning: DWARF2 CFI reader: unhandled DW_OP_ opcode 0x13 --5650-- Warning: DWARF2 CFI reader: unhandled DW_OP_ opcode 0x13 --5650-- Warning: DWARF2 CFI reader: unhandled DW_OP_ opcode 0x13 --5650-- Warning: DWARF2 CFI reader: unhandled DW_OP_ opcode 0x13 --5650-- Warning: DWARF2 CFI reader: unhandled DW_OP_ opcode 0x13 --5650-- Warning: DWARF2 CFI reader: unhandled DW_OP_ opcode 0x13 --5650-- Warning: DWARF2 CFI reader: unhandled DW_OP_ opcode 0x13 --5650-- Warning: DWARF2 CFI reader: unhandled DW_OP_ opcode 0x13 --5650-- Warning: DWARF2 CFI reader: unhandled DW_OP_ opcode 0x13 --5650-- Warning: DWARF2 CFI reader: unhandled DW_OP_ opcode 0x13 --5650-- Warning: DWARF2 CFI reader: unhandled DW_OP_ opcode 0x13 --5650-- Warning: DWARF2 CFI reader: unhandled DW_OP_ opcode 0x13 --5650-- Warning: DWARF2 CFI reader: unhandled DW_OP_ opcode 0x13 --5650-- Warning: DWARF2 CFI reader: unhandled DW_OP_ opcode 0x13 --5650-- Warning: DWARF2 CFI reader: unhandled DW_OP_ opcode 0x13 --5650-- Warning: DWARF2 CFI reader: unhandled DW_OP_ opcode 0x13 --5650-- Warning: DWARF2 CFI reader: unhandled DW_OP_ opcode 0x13 --5650-- Warning: DWARF2 CFI reader: unhandled DW_OP_ opcode 0x13 --5650-- Warning: DWARF2 CFI reader: unhandled DW_OP_ opcode 0x13 --5650-- Warning: DWARF2 CFI reader: unhandled DW_OP_ opcode 0x13 --5650-- Warning: DWARF2 CFI reader: unhandled DW_OP_ opcode 0x13 --5650-- Warning: DWARF2 CFI reader: unhandled DW_OP_ opcode 0x13 --5650-- Warning: DWARF2 CFI reader: unhandled DW_OP_ opcode 0x13 --5650-- Warning: DWARF2 CFI reader: unhandled DW_OP_ opcode 0x13 --5650-- Warning: DWARF2 CFI reader: unhandled DW_OP_ opcode 0x13 --5650-- Warning: DWARF2 CFI reader: unhandled DW_OP_ opcode 0x13 ==5650== ==5650== HEAP SUMMARY: ==5650== in use at exit: 3,062,353 bytes in 1,951 blocks ==5650== total heap usage: 47,327 allocs, 45,376 frees, 93,143,790 bytes allocated ==5650== ==5650== LEAK SUMMARY: ==5650== definitely lost: 0 bytes in 0 blocks ==5650== indirectly lost: 0 bytes in 0 blocks ==5650== possibly lost: 151,315 bytes in 96 blocks ==5650== still reachable: 2,911,038 bytes in 1,855 blocks ==5650== suppressed: 0 bytes in 0 blocks ==5650== Rerun with --leak-check=full to see details of leaked memory ==5650== ==5650== For counts of detected and suppressed errors, rerun with: -v ==5650== Use --track-origins=yes to see where uninitialised values come from ==5650== ERROR SUMMARY: 6672 errors from 5 contexts (suppressed: 11469 from 644) ================================================================================ To pass this verification check the number of bytes that are "definitely lost" or "indirectly lost" must be zero. NOTE that Valgrind will typically report non-zero "possibly lost" bytes due to Python's internal memory allocation and garbage collection that it does not monitor. Full Valgrind output written to auxiliary file "valgrind.out" Grade: P Comment: No memory leak detected. === Verification check vc-memory-leak end (2020-04-05 21:31:23) ===