Enter a model name: === Verification check vc-memory-leak start (2020-04-05 21:26:29) === !!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!! !!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!! !!!!! !!!!! !!!!! VERIFICATION CHECK: vc-memory-leak !!!!! !!!!! !!!!! !!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!! !!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!! Description: Check that the model has no memory leaks. This is tested using the Valgrind memory debugging tool (http://valgrind.org) by performing a series of energy and force calculations on a randomly distorted face-centered cubic (FCC) cube base structure for both non-periodic and periodic boundary conditions. Separate configurations are tested for each species supported by the model, as well as one containing a random distribution of all species. Configurations used for testing are provided as auxiliary files. Author: Ellad Tadmor and Daniel S. Karls ----------------------------------------------------------------------------------------------------- Results for KIM Model : Sim_LAMMPS_MEAM_HennigLenoskyTrinkle_2008_Ti__SM_318953488749_000 Supported species : Ti random seed = 13 lattice constant (orig) = 3.000 perturbation amplitude = 0.300 number unit cells per side = 2 ----------------------------------------------------------------------------------------------------- MONOATOMIC STRUCTURE (pbc=False)-- Species = Ti (Configuration in file "config-F-Ti.xyz") ----------------------------------------------------------------------------------------------------- Energy = 52.89814246638411 Forces: 1 -1.10707247e+01 -9.63204780e+00 -7.86510021e+00 2 1.03031665e+01 1.90999715e+01 -5.07667444e+00 3 5.70108832e+00 -1.06460104e+01 4.50465843e+00 4 -6.13196389e+00 1.29028339e+01 1.09072646e+01 5 4.90277122e+00 -7.87134294e+00 -5.84186726e-01 6 4.72363847e+00 -1.17653044e+00 -6.02909783e+00 7 2.88824562e+00 -1.56308390e+01 -1.26389242e+01 8 -2.63513919e+01 -1.67660986e+01 1.15389016e+00 9 -4.36501491e+00 -4.41047841e+00 -7.90214349e+00 10 -6.44876638e+00 9.06069579e+00 -1.73768804e+01 11 7.95015389e+00 -1.91984120e+01 8.99351913e+00 12 -7.79627798e+00 5.48046439e+00 4.60490342e+00 13 -1.82377190e+01 -1.27579995e+01 -3.29748435e+01 14 1.17954622e+01 6.24497093e+00 -6.27475881e+00 15 3.96072633e+01 -8.05210398e+00 1.66741174e+00 16 -5.46253172e+00 2.75664971e+01 1.52332330e+01 17 -1.91250122e+01 -1.48631459e+01 -1.37648071e+01 18 1.43077586e+01 1.97768254e+01 -1.87261969e+01 19 1.83288868e+01 -8.82593193e+00 4.15094709e+00 20 -1.47870990e+01 1.84563448e+01 2.10657236e+01 21 -2.23964806e+00 -1.23961383e+01 -2.90865783e+00 22 5.20059452e+00 1.38409653e+01 4.44612300e+00 23 8.72371578e+00 -2.45946535e+00 8.37230433e+00 24 -8.35451556e+00 2.03400026e+00 5.96912542e+00 25 -7.47251702e+00 -9.93035705e+00 -2.40146732e-01 26 -3.50410161e+00 1.48836846e+01 -1.16697634e+01 27 -3.50587318e+00 -2.34578284e+01 9.31961939e+00 28 -1.40007109e+01 1.16417688e+01 1.98762117e+00 29 -1.06219316e+01 -7.95830623e+00 1.88830814e+01 30 1.21600097e+01 1.92815461e+01 1.36995663e+00 31 1.43529918e+01 -7.56194240e+00 1.04372833e+01 32 8.53005292e+00 1.33244097e+01 1.09655156e+01 MONOATOMIC STRUCTURE (pbc=True)-- Species = Ti (Configuration in file "config-T-Ti.xyz") ----------------------------------------------------------------------------------------------------- Energy = 52.89814246638411 Forces: 1 -1.10707247e+01 -9.63204780e+00 -7.86510021e+00 2 1.03031665e+01 1.90999715e+01 -5.07667444e+00 3 5.70108832e+00 -1.06460104e+01 4.50465843e+00 4 -6.13196389e+00 1.29028339e+01 1.09072646e+01 5 4.90277122e+00 -7.87134294e+00 -5.84186726e-01 6 4.72363847e+00 -1.17653044e+00 -6.02909783e+00 7 2.88824562e+00 -1.56308390e+01 -1.26389242e+01 8 -2.63513919e+01 -1.67660986e+01 1.15389016e+00 9 -4.36501491e+00 -4.41047841e+00 -7.90214349e+00 10 -6.44876638e+00 9.06069579e+00 -1.73768804e+01 11 7.95015389e+00 -1.91984120e+01 8.99351913e+00 12 -7.79627798e+00 5.48046439e+00 4.60490342e+00 13 -1.82377190e+01 -1.27579995e+01 -3.29748435e+01 14 1.17954622e+01 6.24497093e+00 -6.27475881e+00 15 3.96072633e+01 -8.05210398e+00 1.66741174e+00 16 -5.46253172e+00 2.75664971e+01 1.52332330e+01 17 -1.91250122e+01 -1.48631459e+01 -1.37648071e+01 18 1.43077586e+01 1.97768254e+01 -1.87261969e+01 19 1.83288868e+01 -8.82593193e+00 4.15094709e+00 20 -1.47870990e+01 1.84563448e+01 2.10657236e+01 21 -2.23964806e+00 -1.23961383e+01 -2.90865783e+00 22 5.20059452e+00 1.38409653e+01 4.44612300e+00 23 8.72371578e+00 -2.45946535e+00 8.37230433e+00 24 -8.35451556e+00 2.03400026e+00 5.96912542e+00 25 -7.47251702e+00 -9.93035705e+00 -2.40146732e-01 26 -3.50410161e+00 1.48836846e+01 -1.16697634e+01 27 -3.50587318e+00 -2.34578284e+01 9.31961939e+00 28 -1.40007109e+01 1.16417688e+01 1.98762117e+00 29 -1.06219316e+01 -7.95830623e+00 1.88830814e+01 30 1.21600097e+01 1.92815461e+01 1.36995663e+00 31 1.43529918e+01 -7.56194240e+00 1.04372833e+01 32 8.53005292e+00 1.33244097e+01 1.09655156e+01 ================================================================================ VALGRIND OUTPUT ================================================================================ ==4772== Memcheck, a memory error detector ==4772== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. ==4772== Using Valgrind-3.13.0 and LibVEX; rerun with -h for copyright info ==4772== Command: python runner2.py Sim_LAMMPS_MEAM_HennigLenoskyTrinkle_2008_Ti__SM_318953488749_000 ==4772== ==4772== Conditional jump or move depends on uninitialised value(s) ==4772== at 0x4FCBE77: __wcsnlen_avx2 (strlen-avx2.S:261) ==4772== by 0x4EF9EC1: wcsrtombs (wcsrtombs.c:104) ==4772== by 0x4E7FB20: wcstombs (wcstombs.c:34) ==4772== by 0x547A3F: ??? (in /usr/bin/python3.6) ==4772== by 0x63345D: _Py_stat (in /usr/bin/python3.6) ==4772== by 0x5BA640: ??? (in /usr/bin/python3.6) ==4772== by 0x551B80: ??? (in /usr/bin/python3.6) ==4772== by 0x5AA6EB: _PyObject_FastCallKeywords (in /usr/bin/python3.6) ==4772== by 0x50ABB2: ??? (in /usr/bin/python3.6) ==4772== by 0x50C5B8: _PyEval_EvalFrameDefault (in /usr/bin/python3.6) ==4772== by 0x509D47: ??? (in /usr/bin/python3.6) ==4772== by 0x50AA7C: ??? (in /usr/bin/python3.6) ==4772== ==4772== Conditional jump or move depends on uninitialised value(s) ==4772== at 0x4E63408: internal_utf8_loop (loop.c:298) ==4772== by 0x4E63408: __gconv_transform_internal_utf8 (skeleton.c:609) ==4772== by 0x4EF9EF4: wcsrtombs (wcsrtombs.c:110) ==4772== by 0x4E7FB20: wcstombs (wcstombs.c:34) ==4772== by 0x547A3F: ??? (in /usr/bin/python3.6) ==4772== by 0x63345D: _Py_stat (in /usr/bin/python3.6) ==4772== by 0x5BA640: ??? (in /usr/bin/python3.6) ==4772== by 0x551B80: ??? (in /usr/bin/python3.6) ==4772== by 0x5AA6EB: _PyObject_FastCallKeywords (in /usr/bin/python3.6) ==4772== by 0x50ABB2: ??? (in /usr/bin/python3.6) ==4772== by 0x50C5B8: _PyEval_EvalFrameDefault (in /usr/bin/python3.6) ==4772== by 0x509D47: ??? (in /usr/bin/python3.6) ==4772== by 0x50AA7C: ??? (in /usr/bin/python3.6) ==4772== ==4772== Conditional jump or move depends on uninitialised value(s) ==4772== at 0x4E63411: internal_utf8_loop (loop.c:303) ==4772== by 0x4E63411: __gconv_transform_internal_utf8 (skeleton.c:609) ==4772== by 0x4EF9EF4: wcsrtombs (wcsrtombs.c:110) ==4772== by 0x4E7FB20: wcstombs (wcstombs.c:34) ==4772== by 0x547A3F: ??? (in /usr/bin/python3.6) ==4772== by 0x63345D: _Py_stat (in /usr/bin/python3.6) ==4772== by 0x5BA640: ??? (in /usr/bin/python3.6) ==4772== by 0x551B80: ??? (in /usr/bin/python3.6) ==4772== by 0x5AA6EB: _PyObject_FastCallKeywords (in /usr/bin/python3.6) ==4772== by 0x50ABB2: ??? (in /usr/bin/python3.6) ==4772== by 0x50C5B8: _PyEval_EvalFrameDefault (in /usr/bin/python3.6) ==4772== by 0x509D47: ??? (in /usr/bin/python3.6) ==4772== by 0x50AA7C: ??? (in /usr/bin/python3.6) ==4772== ==4772== Conditional jump or move depends on uninitialised value(s) ==4772== at 0x4E63458: internal_utf8_loop (loop.c:298) ==4772== by 0x4E63458: __gconv_transform_internal_utf8 (skeleton.c:609) ==4772== by 0x4EF9EF4: wcsrtombs (wcsrtombs.c:110) ==4772== by 0x4E7FB20: wcstombs (wcstombs.c:34) ==4772== by 0x547A3F: ??? (in /usr/bin/python3.6) ==4772== by 0x63345D: _Py_stat (in /usr/bin/python3.6) ==4772== by 0x5BA640: ??? (in /usr/bin/python3.6) ==4772== by 0x551B80: ??? (in /usr/bin/python3.6) ==4772== by 0x5AA6EB: _PyObject_FastCallKeywords (in /usr/bin/python3.6) ==4772== by 0x50ABB2: ??? (in /usr/bin/python3.6) ==4772== by 0x50C5B8: _PyEval_EvalFrameDefault (in /usr/bin/python3.6) ==4772== by 0x509D47: ??? (in /usr/bin/python3.6) ==4772== by 0x50AA7C: ??? (in /usr/bin/python3.6) ==4772== ==4772== Conditional jump or move depends on uninitialised value(s) ==4772== at 0x4FCBCEC: __wcsnlen_avx2 (strlen-avx2.S:103) ==4772== by 0x4EF9EC1: wcsrtombs (wcsrtombs.c:104) ==4772== by 0x4E7FB20: wcstombs (wcstombs.c:34) ==4772== by 0x547A3F: ??? (in /usr/bin/python3.6) ==4772== by 0x547D20: PyUnicode_FSConverter (in /usr/bin/python3.6) ==4772== by 0x4C51E6: ??? (in /usr/bin/python3.6) ==4772== by 0x4F8388: ??? (in /usr/bin/python3.6) ==4772== by 0x4FBD83: ??? (in /usr/bin/python3.6) ==4772== by 0x4FC914: _PyArg_ParseStack_SizeT (in /usr/bin/python3.6) ==4772== by 0x4C6C88: ??? (in /usr/bin/python3.6) ==4772== by 0x50A9D9: ??? (in /usr/bin/python3.6) ==4772== by 0x50C5B8: _PyEval_EvalFrameDefault (in /usr/bin/python3.6) ==4772== --4772-- Warning: DWARF2 CFI reader: unhandled DW_OP_ opcode 0x13 --4772-- Warning: DWARF2 CFI reader: unhandled DW_OP_ opcode 0x13 --4772-- Warning: DWARF2 CFI reader: unhandled DW_OP_ opcode 0x13 --4772-- Warning: DWARF2 CFI reader: unhandled DW_OP_ opcode 0x13 --4772-- Warning: DWARF2 CFI reader: unhandled DW_OP_ opcode 0x13 --4772-- Warning: DWARF2 CFI reader: unhandled DW_OP_ opcode 0x13 --4772-- Warning: DWARF2 CFI reader: unhandled DW_OP_ opcode 0x13 --4772-- Warning: DWARF2 CFI reader: unhandled DW_OP_ opcode 0x13 --4772-- Warning: DWARF2 CFI reader: unhandled DW_OP_ opcode 0x13 --4772-- Warning: DWARF2 CFI reader: unhandled DW_OP_ opcode 0x13 --4772-- Warning: DWARF2 CFI reader: unhandled DW_OP_ opcode 0x13 --4772-- Warning: DWARF2 CFI reader: unhandled DW_OP_ opcode 0x13 --4772-- Warning: DWARF2 CFI reader: unhandled DW_OP_ opcode 0x13 --4772-- Warning: DWARF2 CFI reader: unhandled DW_OP_ opcode 0x13 --4772-- Warning: DWARF2 CFI reader: unhandled DW_OP_ opcode 0x13 --4772-- Warning: DWARF2 CFI reader: unhandled DW_OP_ opcode 0x13 --4772-- Warning: DWARF2 CFI reader: unhandled DW_OP_ opcode 0x13 --4772-- Warning: DWARF2 CFI reader: unhandled DW_OP_ opcode 0x13 --4772-- Warning: DWARF2 CFI reader: unhandled DW_OP_ opcode 0x13 --4772-- Warning: DWARF2 CFI reader: unhandled DW_OP_ opcode 0x13 --4772-- Warning: DWARF2 CFI reader: unhandled DW_OP_ opcode 0x13 --4772-- Warning: DWARF2 CFI reader: unhandled DW_OP_ opcode 0x13 --4772-- Warning: DWARF2 CFI reader: unhandled DW_OP_ opcode 0x13 --4772-- Warning: DWARF2 CFI reader: unhandled DW_OP_ opcode 0x13 --4772-- Warning: DWARF2 CFI reader: unhandled DW_OP_ opcode 0x13 --4772-- Warning: DWARF2 CFI reader: unhandled DW_OP_ opcode 0x13 --4772-- Warning: DWARF2 CFI reader: unhandled DW_OP_ opcode 0x13 --4772-- Warning: DWARF2 CFI reader: unhandled DW_OP_ opcode 0x13 --4772-- Warning: DWARF2 CFI reader: unhandled DW_OP_ opcode 0x13 --4772-- Warning: DWARF2 CFI reader: unhandled DW_OP_ opcode 0x13 --4772-- Warning: DWARF2 CFI reader: unhandled DW_OP_ opcode 0x13 --4772-- Warning: DWARF2 CFI reader: unhandled DW_OP_ opcode 0x13 --4772-- Warning: DWARF2 CFI reader: unhandled DW_OP_ opcode 0x13 --4772-- Warning: DWARF2 CFI reader: unhandled DW_OP_ opcode 0x13 --4772-- Warning: DWARF2 CFI reader: unhandled DW_OP_ opcode 0x13 --4772-- Warning: DWARF2 CFI reader: unhandled DW_OP_ opcode 0x13 --4772-- Warning: DWARF2 CFI reader: unhandled DW_OP_ opcode 0x13 --4772-- Warning: DWARF2 CFI reader: unhandled DW_OP_ opcode 0x13 --4772-- Warning: DWARF2 CFI reader: unhandled DW_OP_ opcode 0x13 --4772-- Warning: DWARF2 CFI reader: unhandled DW_OP_ opcode 0x13 --4772-- Warning: DWARF2 CFI reader: unhandled DW_OP_ opcode 0x13 --4772-- Warning: DWARF2 CFI reader: unhandled DW_OP_ opcode 0x13 --4772-- Warning: DWARF2 CFI reader: unhandled DW_OP_ opcode 0x13 --4772-- Warning: DWARF2 CFI reader: unhandled DW_OP_ opcode 0x13 --4772-- Warning: DWARF2 CFI reader: unhandled DW_OP_ opcode 0x13 --4772-- Warning: DWARF2 CFI reader: unhandled DW_OP_ opcode 0x13 --4772-- Warning: DWARF2 CFI reader: unhandled DW_OP_ opcode 0x13 --4772-- Warning: DWARF2 CFI reader: unhandled DW_OP_ opcode 0x13 ==4772== ==4772== HEAP SUMMARY: ==4772== in use at exit: 3,062,521 bytes in 1,951 blocks ==4772== total heap usage: 46,110 allocs, 44,159 frees, 75,405,454 bytes allocated ==4772== ==4772== LEAK SUMMARY: ==4772== definitely lost: 0 bytes in 0 blocks ==4772== indirectly lost: 0 bytes in 0 blocks ==4772== possibly lost: 151,315 bytes in 96 blocks ==4772== still reachable: 2,911,206 bytes in 1,855 blocks ==4772== suppressed: 0 bytes in 0 blocks ==4772== Rerun with --leak-check=full to see details of leaked memory ==4772== ==4772== For counts of detected and suppressed errors, rerun with: -v ==4772== Use --track-origins=yes to see where uninitialised values come from ==4772== ERROR SUMMARY: 6672 errors from 5 contexts (suppressed: 12320 from 674) ================================================================================ To pass this verification check the number of bytes that are "definitely lost" or "indirectly lost" must be zero. NOTE that Valgrind will typically report non-zero "possibly lost" bytes due to Python's internal memory allocation and garbage collection that it does not monitor. Full Valgrind output written to auxiliary file "valgrind.out" Grade: P Comment: No memory leak detected. === Verification check vc-memory-leak end (2020-04-05 21:27:17) ===