Enter a model name: === Verification check vc-memory-leak start (2022-11-30 10:16:41) === !!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!! !!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!! !!!!! !!!!! !!!!! VERIFICATION CHECK: vc-memory-leak !!!!! !!!!! !!!!! !!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!! !!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!! Description: Check that the model has no memory leaks. This is tested using the Valgrind memory debugging tool (http://valgrind.org) by performing a series of energy and force calculations on a randomly distorted face-centered cubic (FCC) cube base structure for both non-periodic and periodic boundary conditions. Separate configurations are tested for each species supported by the model, as well as one containing a random distribution of all species. Configurations used for testing are provided as auxiliary files. Author: Ellad Tadmor and Daniel S. Karls ----------------------------------------------------------------------------------------------------- Results for KIM Model : MEAM_LAMMPS_JeongLee_2020_PdC__MO_068985622065_001 Supported species : C Pd random seed = 13 lattice constant (orig) = 3.000 perturbation amplitude = 0.300 number unit cells per side = 2 ----------------------------------------------------------------------------------------------------- MONOATOMIC STRUCTURE (pbc=False)-- Species = C (Configuration in file "config-F-C.xyz") ----------------------------------------------------------------------------------------------------- Energy = -12.567902390513689 Forces: 1 -7.62163792e+00 4.47215455e-01 -3.83554629e+00 2 -2.78049787e+00 1.02470630e+01 -1.59353185e+01 3 -1.36772654e+00 -9.31721548e+00 1.53784433e+01 4 -8.39344509e+00 -4.33299641e+00 1.21039341e+00 5 1.08527160e+01 -7.37615098e+00 -2.79755622e+00 6 4.55136955e+00 -4.56115249e+00 -5.69703725e+00 7 -8.56913254e+00 3.84955239e-01 1.38631277e+01 8 -3.24064504e+00 -1.89254693e+01 3.32352949e+00 9 -7.33814522e+00 -5.16372002e+00 -1.53382697e+01 10 5.62835154e+00 1.65504081e+01 -1.42785848e+01 11 -1.44136408e+01 -2.26839630e+01 -3.18655761e+00 12 -1.66244373e+01 1.41016602e+01 7.71979838e+00 13 -8.00965949e+00 7.17836649e+00 -3.09845152e+01 14 8.48642881e+00 6.57637365e+00 -4.75111732e+00 15 3.88273370e+01 -5.07799697e+00 8.05031509e+00 16 -2.35056411e+00 3.00297140e+01 1.01254177e+00 17 -1.09254307e+01 -6.98260838e+00 -7.24579409e+00 18 8.13375578e+00 5.08957560e+00 -5.57260512e+00 19 6.04719362e+00 -9.63100403e+00 8.80983717e+00 20 -5.97220430e+00 7.09445913e+00 9.41913193e+00 21 -1.18035300e+01 -2.56449084e+01 -1.21431346e+01 22 3.19423555e+01 1.98759892e+01 -6.14619725e+00 23 -8.18384041e-01 -2.48620677e+00 6.06629847e+00 24 1.73389260e-01 7.57845316e+00 8.01535422e+00 25 -1.07728648e+00 -1.27885394e+01 -7.68237690e+00 26 7.79513669e+00 1.61264363e+01 -3.69415507e+00 27 -7.09165160e+00 -2.23609308e+00 -2.12707872e+00 28 -1.83415575e+01 1.06265652e+01 2.87472069e+01 29 -2.86911660e+00 -3.00810601e+01 1.24957097e+01 30 1.09387515e+01 7.82720147e+00 -2.67382641e+00 31 4.40221098e+00 -4.65707547e+00 1.29640906e+00 32 1.82969699e+00 1.22117242e+01 1.86815745e+01 MONOATOMIC STRUCTURE (pbc=True)-- Species = C (Configuration in file "config-T-C.xyz") ----------------------------------------------------------------------------------------------------- Energy = -12.567902390513689 Forces: 1 -7.62163792e+00 4.47215455e-01 -3.83554629e+00 2 -2.78049787e+00 1.02470630e+01 -1.59353185e+01 3 -1.36772654e+00 -9.31721548e+00 1.53784433e+01 4 -8.39344509e+00 -4.33299641e+00 1.21039341e+00 5 1.08527160e+01 -7.37615098e+00 -2.79755622e+00 6 4.55136955e+00 -4.56115249e+00 -5.69703725e+00 7 -8.56913254e+00 3.84955239e-01 1.38631277e+01 8 -3.24064504e+00 -1.89254693e+01 3.32352949e+00 9 -7.33814522e+00 -5.16372002e+00 -1.53382697e+01 10 5.62835154e+00 1.65504081e+01 -1.42785848e+01 11 -1.44136408e+01 -2.26839630e+01 -3.18655761e+00 12 -1.66244373e+01 1.41016602e+01 7.71979838e+00 13 -8.00965949e+00 7.17836649e+00 -3.09845152e+01 14 8.48642881e+00 6.57637365e+00 -4.75111732e+00 15 3.88273370e+01 -5.07799697e+00 8.05031509e+00 16 -2.35056411e+00 3.00297140e+01 1.01254177e+00 17 -1.09254307e+01 -6.98260838e+00 -7.24579409e+00 18 8.13375578e+00 5.08957560e+00 -5.57260512e+00 19 6.04719362e+00 -9.63100403e+00 8.80983717e+00 20 -5.97220430e+00 7.09445913e+00 9.41913193e+00 21 -1.18035300e+01 -2.56449084e+01 -1.21431346e+01 22 3.19423555e+01 1.98759892e+01 -6.14619725e+00 23 -8.18384041e-01 -2.48620677e+00 6.06629847e+00 24 1.73389260e-01 7.57845316e+00 8.01535422e+00 25 -1.07728648e+00 -1.27885394e+01 -7.68237690e+00 26 7.79513669e+00 1.61264363e+01 -3.69415507e+00 27 -7.09165160e+00 -2.23609308e+00 -2.12707872e+00 28 -1.83415575e+01 1.06265652e+01 2.87472069e+01 29 -2.86911660e+00 -3.00810601e+01 1.24957097e+01 30 1.09387515e+01 7.82720147e+00 -2.67382641e+00 31 4.40221098e+00 -4.65707547e+00 1.29640906e+00 32 1.82969699e+00 1.22117242e+01 1.86815745e+01 MONOATOMIC STRUCTURE (pbc=False)-- Species = Pd (Configuration in file "config-F-Pd.xyz") ----------------------------------------------------------------------------------------------------- Energy = 175.52426731440042 Forces: 1 -2.46843993e+01 -1.41815612e+01 -4.65514234e+01 2 1.99877968e+01 -1.97248160e+01 -3.65092416e+01 3 3.19014445e+01 -2.42823792e+01 1.72512061e+01 4 -2.50113168e+01 -1.11288574e+01 3.25651054e+00 5 7.21980289e+00 -1.47451296e+01 -1.23958182e+01 6 1.55179631e+01 -5.72080135e+00 -1.53556058e+01 7 7.71759885e+00 -1.03364927e+01 -3.97064796e+00 8 7.01797749e-01 -1.46376588e+01 7.92888769e+00 9 -5.89189273e+01 3.08767795e+01 -3.99334353e+01 10 -8.21705104e+00 1.38001475e+01 -1.28308692e+01 11 2.24500532e+01 -6.76376844e+00 3.22445886e+01 12 -2.88679305e+01 1.62830040e+01 -1.09714144e+01 13 -4.03682517e+01 -3.79532932e+01 -3.84847580e+01 14 5.81013140e+01 7.94617083e+01 -3.29991303e+01 15 4.15803172e+01 -6.54177833e+01 -3.33406513e+01 16 -1.34734839e+01 6.00642440e+01 -1.95598094e+01 17 -2.68637506e+01 -2.35290879e+01 6.43768980e+00 18 6.08358734e+00 2.79499162e+01 -3.18496010e+01 19 1.59947088e+01 -6.25243546e+01 3.66947547e+01 20 -4.82146861e+01 3.75098708e+01 2.47078296e+01 21 1.58534963e+01 -2.18695939e+01 -1.71433891e+01 22 2.52464181e+01 -3.19279454e+01 1.20492964e+00 23 1.87247842e+01 -1.36354361e+01 5.00074597e+00 24 1.28018306e+01 2.16396816e+01 2.42608253e+01 25 -1.73192252e+01 1.73404131e+01 2.47454074e+01 26 1.33069079e+01 1.87698002e+01 1.50140604e+01 27 1.01356816e+01 -1.20324580e+01 1.03142409e+01 28 -2.53528602e+01 1.60132268e+01 7.25840785e+00 29 -6.61796386e+01 -4.42517118e+01 4.29281529e+01 30 5.13635165e+01 5.80131627e+01 3.04976631e+01 31 1.80903516e+01 2.44503815e+00 3.22777676e+01 32 -9.30784995e+00 3.44961360e+01 2.98721269e+01 MONOATOMIC STRUCTURE (pbc=True)-- Species = Pd (Configuration in file "config-T-Pd.xyz") ----------------------------------------------------------------------------------------------------- Energy = 175.52426731440042 Forces: 1 -2.46843993e+01 -1.41815612e+01 -4.65514234e+01 2 1.99877968e+01 -1.97248160e+01 -3.65092416e+01 3 3.19014445e+01 -2.42823792e+01 1.72512061e+01 4 -2.50113168e+01 -1.11288574e+01 3.25651054e+00 5 7.21980289e+00 -1.47451296e+01 -1.23958182e+01 6 1.55179631e+01 -5.72080135e+00 -1.53556058e+01 7 7.71759885e+00 -1.03364927e+01 -3.97064796e+00 8 7.01797749e-01 -1.46376588e+01 7.92888769e+00 9 -5.89189273e+01 3.08767795e+01 -3.99334353e+01 10 -8.21705104e+00 1.38001475e+01 -1.28308692e+01 11 2.24500532e+01 -6.76376844e+00 3.22445886e+01 12 -2.88679305e+01 1.62830040e+01 -1.09714144e+01 13 -4.03682517e+01 -3.79532932e+01 -3.84847580e+01 14 5.81013140e+01 7.94617083e+01 -3.29991303e+01 15 4.15803172e+01 -6.54177833e+01 -3.33406513e+01 16 -1.34734839e+01 6.00642440e+01 -1.95598094e+01 17 -2.68637506e+01 -2.35290879e+01 6.43768980e+00 18 6.08358734e+00 2.79499162e+01 -3.18496010e+01 19 1.59947088e+01 -6.25243546e+01 3.66947547e+01 20 -4.82146861e+01 3.75098708e+01 2.47078296e+01 21 1.58534963e+01 -2.18695939e+01 -1.71433891e+01 22 2.52464181e+01 -3.19279454e+01 1.20492964e+00 23 1.87247842e+01 -1.36354361e+01 5.00074597e+00 24 1.28018306e+01 2.16396816e+01 2.42608253e+01 25 -1.73192252e+01 1.73404131e+01 2.47454074e+01 26 1.33069079e+01 1.87698002e+01 1.50140604e+01 27 1.01356816e+01 -1.20324580e+01 1.03142409e+01 28 -2.53528602e+01 1.60132268e+01 7.25840785e+00 29 -6.61796386e+01 -4.42517118e+01 4.29281529e+01 30 5.13635165e+01 5.80131627e+01 3.04976631e+01 31 1.80903516e+01 2.44503815e+00 3.22777676e+01 32 -9.30784995e+00 3.44961360e+01 2.98721269e+01 MIXED STRUCTURE (pbc=False)-- Species = C Pd (Configuration in file "config-F-CPd.xyz") ----------------------------------------------------------------------------------------------------- Energy = 172.96115154163414 Forces: 1 -1.05510474e+01 -1.94608312e+01 -2.53770920e+01 2 -3.90639885e+00 8.01302226e+00 -5.84550372e+01 3 5.11979165e+00 -4.91189135e+01 -4.15161251e+00 4 -5.57196057e+01 5.82060071e+01 -4.16358510e+01 5 4.88604966e+00 -2.78990867e+00 -1.39463653e+01 6 6.38173406e+01 -6.12999967e+01 -1.91259645e+01 7 4.81889355e+00 -3.26481723e+00 1.06300439e+00 8 1.06755399e+02 1.55017337e+01 -1.08759905e+02 9 -2.30050148e+01 -8.66949904e+00 -1.32789093e+01 10 4.16638544e+01 1.28172454e+01 -4.25135849e+01 11 -1.51388541e+00 5.86666961e+00 2.51606609e+00 12 -3.85541344e+01 1.41733901e+01 3.84850957e+01 13 -5.29451261e+01 4.23737661e+01 -1.92050607e+01 14 1.98237565e+01 1.10012814e+01 1.09242369e+00 15 2.09335565e+01 -7.19713215e+00 1.61002851e+00 16 -1.47397408e+01 2.48824991e+01 -1.04922857e+00 17 -3.98211750e+01 -5.58560673e+01 5.39074031e+01 18 -1.17512276e+02 4.27979000e+01 1.17438983e+02 19 -1.70715632e+01 -2.63014379e+01 2.69133362e+01 20 -3.06234879e+01 -3.99659695e+01 3.13870080e+01 21 5.23765160e+01 -6.29863306e+01 2.17399512e+01 22 7.10521222e+01 4.20528680e+01 -9.68359542e+01 23 6.59432224e+01 -7.89317574e+01 4.10688734e+01 24 -7.48025429e+01 3.69206198e+01 8.99062924e+01 25 -1.49247759e+01 1.90909363e+01 -3.45012223e+01 26 -8.24006209e+00 1.93400614e+01 1.69716559e+01 27 3.37187708e+01 1.15185824e+01 1.88402168e+01 28 -3.87284954e+00 8.61514557e+00 3.05054172e+00 29 -5.72226234e+00 9.58020783e+00 -3.57890356e+01 30 9.78987268e+00 4.59922071e+00 -2.97230841e+00 31 3.79265797e+00 8.78400373e-01 5.97819183e+00 32 9.03414353e+00 2.76131042e+01 4.56280595e+01 MIXED STRUCTURE (pbc=True)-- Species = C Pd (Configuration in file "config-T-CPd.xyz") ----------------------------------------------------------------------------------------------------- Energy = 236.7236415578144 Forces: 1 -1.48406413e+01 3.24826570e+00 -2.53421980e+01 2 -2.62760511e+00 3.17016931e+00 -3.39050567e+01 3 9.06088570e+00 -2.99235588e+01 1.25759547e+00 4 -5.35134596e+01 5.72367764e+01 -4.08241612e+01 5 1.06248506e+01 3.42291557e+00 -8.38483726e+00 6 5.14493200e+01 -5.28885614e+01 -4.64729310e+00 7 5.08461346e+00 7.85419662e+00 -2.90041009e+00 8 1.10077815e+02 2.04022944e+01 -1.06180877e+02 9 -2.56984542e+01 -1.30040030e+01 1.58975841e+01 10 7.05419557e+01 -7.07715514e+00 4.97739166e+00 11 -4.65009682e+00 8.96719630e+00 -1.62178152e+00 12 -3.58258903e+01 -2.22568778e+01 4.76129431e+01 13 -5.32650629e+01 3.84483826e+01 -7.94159959e+00 14 1.40953878e+01 1.84138752e+01 -2.72108283e+00 15 9.21956911e+00 -7.80156321e+00 5.71784769e+00 16 -1.03829526e+01 -7.35670199e-02 -5.56750721e+00 17 -2.67695767e+01 -4.49966060e+01 5.55862422e+01 18 -1.20283180e+02 4.61429701e+01 1.18264583e+02 19 -2.57932014e+01 -4.05118514e+00 1.33529606e+01 20 -1.90938184e+01 -3.31877517e+01 5.95774609e+00 21 5.01960369e+01 -4.96414493e+01 2.37393058e+01 22 6.31946535e+01 4.34130520e+01 -9.64896350e+01 23 5.23162246e+01 -7.53835194e+01 4.11863793e+01 24 -7.45414831e+01 3.38206495e+01 7.97905693e+01 25 -1.48174612e+00 1.71766778e+01 -3.86429525e+01 26 -1.39737974e+01 8.98428629e+00 1.28031898e+01 27 4.41413636e+01 1.16272870e+01 -6.00644823e+00 28 -2.81972836e+01 1.00150617e+01 -5.35955317e+01 29 2.08035451e+00 4.84788800e+00 -3.06702146e+01 30 1.08258087e+01 -9.96066165e+00 -5.81185181e+00 31 -1.31904053e+01 4.96680665e+00 1.25914788e+00 32 2.12198164e+01 8.08770843e+00 4.38499523e+01 ================================================================================ VALGRIND OUTPUT ================================================================================ ==1416796== Memcheck, a memory error detector ==1416796== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. ==1416796== Using Valgrind-3.15.0 and LibVEX; rerun with -h for copyright info ==1416796== Command: python runner2.py MEAM_LAMMPS_JeongLee_2020_PdC__MO_068985622065_001 ==1416796== ==1418025== Warning: invalid file descriptor 1024 in syscall close() ==1418025== Warning: invalid file descriptor 1025 in syscall close() ==1418025== Warning: invalid file descriptor 1026 in syscall close() ==1418025== Warning: invalid file descriptor 1027 in syscall close() ==1418025== Use --log-fd= to select an alternative log fd. ==1418025== Warning: invalid file descriptor 1028 in syscall close() ==1418025== Warning: invalid file descriptor 1029 in syscall close() ==1416796== Mismatched free() / delete / delete [] ==1416796== at 0x483CFBF: operator delete(void*) (in /usr/lib/x86_64-linux-gnu/valgrind/vgpreload_memcheck-amd64-linux.so) ==1416796== by 0x12C78438C: MEAMC::ProcessLibraryFile(_IO_FILE*, int, std::vector, std::allocator >, std::allocator, std::allocator > > > const&) (in /mmfs1/scratch/bwaters2/bwaters/job-dc070124-b789-44af-9110-f8b5920a3935-007-5d7a1587-03c8-44cb-8618-ec04e465befc/VC_561022993723_004-and-MO_068985622065_001-1669765229/staged_job_files/repository/md/MEAM_LAMMPS__MD_249792265679_001/libkim-api-model-driver.so) ==1416796== by 0x12C65754D: MEAMImplementation::ProcessParameterFiles(KIM::ModelDriverCreate*, int, _IO_FILE* const*) (in /mmfs1/scratch/bwaters2/bwaters/job-dc070124-b789-44af-9110-f8b5920a3935-007-5d7a1587-03c8-44cb-8618-ec04e465befc/VC_561022993723_004-and-MO_068985622065_001-1669765229/staged_job_files/repository/md/MEAM_LAMMPS__MD_249792265679_001/libkim-api-model-driver.so) ==1416796== by 0x12C658C83: MEAMImplementation::MEAMImplementation(KIM::ModelDriverCreate*, KIM::LengthUnit, KIM::EnergyUnit, KIM::ChargeUnit, KIM::TemperatureUnit, KIM::TimeUnit, int*) (in /mmfs1/scratch/bwaters2/bwaters/job-dc070124-b789-44af-9110-f8b5920a3935-007-5d7a1587-03c8-44cb-8618-ec04e465befc/VC_561022993723_004-and-MO_068985622065_001-1669765229/staged_job_files/repository/md/MEAM_LAMMPS__MD_249792265679_001/libkim-api-model-driver.so) ==1416796== by 0x12C641DE7: MEAM::MEAM(KIM::ModelDriverCreate*, KIM::LengthUnit, KIM::EnergyUnit, KIM::ChargeUnit, KIM::TemperatureUnit, KIM::TimeUnit, int*) (in /mmfs1/scratch/bwaters2/bwaters/job-dc070124-b789-44af-9110-f8b5920a3935-007-5d7a1587-03c8-44cb-8618-ec04e465befc/VC_561022993723_004-and-MO_068985622065_001-1669765229/staged_job_files/repository/md/MEAM_LAMMPS__MD_249792265679_001/libkim-api-model-driver.so) ==1416796== by 0x12C6455CE: ModelDriverCreateRoutine (in /mmfs1/scratch/bwaters2/bwaters/job-dc070124-b789-44af-9110-f8b5920a3935-007-5d7a1587-03c8-44cb-8618-ec04e465befc/VC_561022993723_004-and-MO_068985622065_001-1669765229/staged_job_files/repository/md/MEAM_LAMMPS__MD_249792265679_001/libkim-api-model-driver.so) ==1416796== by 0x12BEB1F1E: KIM::ModelImplementation::InitializeParameterizedModel(KIM::LengthUnit, KIM::EnergyUnit, KIM::ChargeUnit, KIM::TemperatureUnit, KIM::TimeUnit, KIM::Collections*) (in /usr/local/lib/libkim-api.so.2.2.1) ==1416796== by 0x12BEB2E18: KIM::ModelImplementation::ModelCreate(KIM::Numbering, KIM::LengthUnit, KIM::EnergyUnit, KIM::ChargeUnit, KIM::TemperatureUnit, KIM::TimeUnit, std::__cxx11::basic_string, std::allocator > const&) (in /usr/local/lib/libkim-api.so.2.2.1) ==1416796== by 0x12BEB7762: KIM::ModelImplementation::Create(KIM::Numbering, KIM::LengthUnit, KIM::EnergyUnit, KIM::ChargeUnit, KIM::TemperatureUnit, KIM::TimeUnit, std::__cxx11::basic_string, std::allocator > const&, int*, KIM::ModelImplementation**) (in /usr/local/lib/libkim-api.so.2.2.1) ==1416796== by 0x12BE67246: KIM::Model::Create(KIM::Numbering, KIM::LengthUnit, KIM::EnergyUnit, KIM::ChargeUnit, KIM::TemperatureUnit, KIM::TimeUnit, std::__cxx11::basic_string, std::allocator > const&, int*, KIM::Model**) (in /usr/local/lib/libkim-api.so.2.2.1) ==1416796== by 0x12BDC76C7: void pybind11::cpp_function::initialize, std::allocator > const&)#21}, pybind11::tuple, KIM::Numbering const&, KIM::LengthUnit const&, KIM::EnergyUnit const&, KIM::ChargeUnit const&, KIM::TemperatureUnit const&, KIM::TimeUnit const&, std::__cxx11::basic_string, std::allocator > const&, pybind11::name, pybind11::scope, pybind11::sibling, char [115], pybind11::arg, char [115], char [115], char [115], char [115], char [115], char [115]>(pybind11_init_model(pybind11::module_&)::{lambda(KIM::Numbering const&, KIM::LengthUnit const&, KIM::EnergyUnit const&, KIM::ChargeUnit const&, KIM::TemperatureUnit const&, KIM::TimeUnit const&, std::__cxx11::basic_string, std::allocator > const&)#21}&&, pybind11::tuple (*)(KIM::Numbering const&, KIM::LengthUnit const&, KIM::EnergyUnit const&, KIM::ChargeUnit const&, KIM::TemperatureUnit const&, KIM::TimeUnit const&, std::__cxx11::basic_string, std::allocator > const&), pybind11::name const&, pybind11::scope const&, pybind11::sibling const&, char const (&) [115], pybind11::arg const&, char const (&) [115], char const (&) [115], char const (&) [115], char const (&) [115], char const (&) [115], char const (&) [115])::{lambda(pybind11::detail::function_call&)#3}::_FUN(pybind11::detail::function_call) (KIM_Model_bind.cpp:400) ==1416796== by 0x12BDDD17B: pybind11::cpp_function::dispatcher(_object*, _object*, _object*) (pybind11.h:929) ==1416796== Address 0xa8f7c2d0 is 0 bytes inside a block of size 1,024 alloc'd ==1416796== at 0x483C583: operator new[](unsigned long) (in /usr/lib/x86_64-linux-gnu/valgrind/vgpreload_memcheck-amd64-linux.so) ==1416796== by 0x12C783B11: MEAMC::ProcessLibraryFile(_IO_FILE*, int, std::vector, std::allocator >, std::allocator, std::allocator > > > const&) (in /mmfs1/scratch/bwaters2/bwaters/job-dc070124-b789-44af-9110-f8b5920a3935-007-5d7a1587-03c8-44cb-8618-ec04e465befc/VC_561022993723_004-and-MO_068985622065_001-1669765229/staged_job_files/repository/md/MEAM_LAMMPS__MD_249792265679_001/libkim-api-model-driver.so) ==1416796== by 0x12C65754D: MEAMImplementation::ProcessParameterFiles(KIM::ModelDriverCreate*, int, _IO_FILE* const*) (in /mmfs1/scratch/bwaters2/bwaters/job-dc070124-b789-44af-9110-f8b5920a3935-007-5d7a1587-03c8-44cb-8618-ec04e465befc/VC_561022993723_004-and-MO_068985622065_001-1669765229/staged_job_files/repository/md/MEAM_LAMMPS__MD_249792265679_001/libkim-api-model-driver.so) ==1416796== by 0x12C658C83: MEAMImplementation::MEAMImplementation(KIM::ModelDriverCreate*, KIM::LengthUnit, KIM::EnergyUnit, KIM::ChargeUnit, KIM::TemperatureUnit, KIM::TimeUnit, int*) (in /mmfs1/scratch/bwaters2/bwaters/job-dc070124-b789-44af-9110-f8b5920a3935-007-5d7a1587-03c8-44cb-8618-ec04e465befc/VC_561022993723_004-and-MO_068985622065_001-1669765229/staged_job_files/repository/md/MEAM_LAMMPS__MD_249792265679_001/libkim-api-model-driver.so) ==1416796== by 0x12C641DE7: MEAM::MEAM(KIM::ModelDriverCreate*, KIM::LengthUnit, KIM::EnergyUnit, KIM::ChargeUnit, KIM::TemperatureUnit, KIM::TimeUnit, int*) (in /mmfs1/scratch/bwaters2/bwaters/job-dc070124-b789-44af-9110-f8b5920a3935-007-5d7a1587-03c8-44cb-8618-ec04e465befc/VC_561022993723_004-and-MO_068985622065_001-1669765229/staged_job_files/repository/md/MEAM_LAMMPS__MD_249792265679_001/libkim-api-model-driver.so) ==1416796== by 0x12C6455CE: ModelDriverCreateRoutine (in /mmfs1/scratch/bwaters2/bwaters/job-dc070124-b789-44af-9110-f8b5920a3935-007-5d7a1587-03c8-44cb-8618-ec04e465befc/VC_561022993723_004-and-MO_068985622065_001-1669765229/staged_job_files/repository/md/MEAM_LAMMPS__MD_249792265679_001/libkim-api-model-driver.so) ==1416796== by 0x12BEB1F1E: KIM::ModelImplementation::InitializeParameterizedModel(KIM::LengthUnit, KIM::EnergyUnit, KIM::ChargeUnit, KIM::TemperatureUnit, KIM::TimeUnit, KIM::Collections*) (in /usr/local/lib/libkim-api.so.2.2.1) ==1416796== by 0x12BEB2E18: KIM::ModelImplementation::ModelCreate(KIM::Numbering, KIM::LengthUnit, KIM::EnergyUnit, KIM::ChargeUnit, KIM::TemperatureUnit, KIM::TimeUnit, std::__cxx11::basic_string, std::allocator > const&) (in /usr/local/lib/libkim-api.so.2.2.1) ==1416796== by 0x12BEB7762: KIM::ModelImplementation::Create(KIM::Numbering, KIM::LengthUnit, KIM::EnergyUnit, KIM::ChargeUnit, KIM::TemperatureUnit, KIM::TimeUnit, std::__cxx11::basic_string, std::allocator > const&, int*, KIM::ModelImplementation**) (in /usr/local/lib/libkim-api.so.2.2.1) ==1416796== by 0x12BE67246: KIM::Model::Create(KIM::Numbering, KIM::LengthUnit, KIM::EnergyUnit, KIM::ChargeUnit, KIM::TemperatureUnit, KIM::TimeUnit, std::__cxx11::basic_string, std::allocator > const&, int*, KIM::Model**) (in /usr/local/lib/libkim-api.so.2.2.1) ==1416796== by 0x12BDC76C7: void pybind11::cpp_function::initialize, std::allocator > const&)#21}, pybind11::tuple, KIM::Numbering const&, KIM::LengthUnit const&, KIM::EnergyUnit const&, KIM::ChargeUnit const&, KIM::TemperatureUnit const&, KIM::TimeUnit const&, std::__cxx11::basic_string, std::allocator > const&, pybind11::name, pybind11::scope, pybind11::sibling, char [115], pybind11::arg, char [115], char [115], char [115], char [115], char [115], char [115]>(pybind11_init_model(pybind11::module_&)::{lambda(KIM::Numbering const&, KIM::LengthUnit const&, KIM::EnergyUnit const&, KIM::ChargeUnit const&, KIM::TemperatureUnit const&, KIM::TimeUnit const&, std::__cxx11::basic_string, std::allocator > const&)#21}&&, pybind11::tuple (*)(KIM::Numbering const&, KIM::LengthUnit const&, KIM::EnergyUnit const&, KIM::ChargeUnit const&, KIM::TemperatureUnit const&, KIM::TimeUnit const&, std::__cxx11::basic_string, std::allocator > const&), pybind11::name const&, pybind11::scope const&, pybind11::sibling const&, char const (&) [115], pybind11::arg const&, char const (&) [115], char const (&) [115], char const (&) [115], char const (&) [115], char const (&) [115], char const (&) [115])::{lambda(pybind11::detail::function_call&)#3}::_FUN(pybind11::detail::function_call) (KIM_Model_bind.cpp:400) ==1416796== by 0x12BDDD17B: pybind11::cpp_function::dispatcher(_object*, _object*, _object*) (pybind11.h:929) ==1416796== ==1416796== Mismatched free() / delete / delete [] ==1416796== at 0x483CFBF: operator delete(void*) (in /usr/lib/x86_64-linux-gnu/valgrind/vgpreload_memcheck-amd64-linux.so) ==1416796== by 0x12C77EDBD: MEAMC::ProcessParameterFile(_IO_FILE*, int) (in /mmfs1/scratch/bwaters2/bwaters/job-dc070124-b789-44af-9110-f8b5920a3935-007-5d7a1587-03c8-44cb-8618-ec04e465befc/VC_561022993723_004-and-MO_068985622065_001-1669765229/staged_job_files/repository/md/MEAM_LAMMPS__MD_249792265679_001/libkim-api-model-driver.so) ==1416796== by 0x12C657578: MEAMImplementation::ProcessParameterFiles(KIM::ModelDriverCreate*, int, _IO_FILE* const*) (in /mmfs1/scratch/bwaters2/bwaters/job-dc070124-b789-44af-9110-f8b5920a3935-007-5d7a1587-03c8-44cb-8618-ec04e465befc/VC_561022993723_004-and-MO_068985622065_001-1669765229/staged_job_files/repository/md/MEAM_LAMMPS__MD_249792265679_001/libkim-api-model-driver.so) ==1416796== by 0x12C658C83: MEAMImplementation::MEAMImplementation(KIM::ModelDriverCreate*, KIM::LengthUnit, KIM::EnergyUnit, KIM::ChargeUnit, KIM::TemperatureUnit, KIM::TimeUnit, int*) (in /mmfs1/scratch/bwaters2/bwaters/job-dc070124-b789-44af-9110-f8b5920a3935-007-5d7a1587-03c8-44cb-8618-ec04e465befc/VC_561022993723_004-and-MO_068985622065_001-1669765229/staged_job_files/repository/md/MEAM_LAMMPS__MD_249792265679_001/libkim-api-model-driver.so) ==1416796== by 0x12C641DE7: MEAM::MEAM(KIM::ModelDriverCreate*, KIM::LengthUnit, KIM::EnergyUnit, KIM::ChargeUnit, KIM::TemperatureUnit, KIM::TimeUnit, int*) (in /mmfs1/scratch/bwaters2/bwaters/job-dc070124-b789-44af-9110-f8b5920a3935-007-5d7a1587-03c8-44cb-8618-ec04e465befc/VC_561022993723_004-and-MO_068985622065_001-1669765229/staged_job_files/repository/md/MEAM_LAMMPS__MD_249792265679_001/libkim-api-model-driver.so) ==1416796== by 0x12C6455CE: ModelDriverCreateRoutine (in /mmfs1/scratch/bwaters2/bwaters/job-dc070124-b789-44af-9110-f8b5920a3935-007-5d7a1587-03c8-44cb-8618-ec04e465befc/VC_561022993723_004-and-MO_068985622065_001-1669765229/staged_job_files/repository/md/MEAM_LAMMPS__MD_249792265679_001/libkim-api-model-driver.so) ==1416796== by 0x12BEB1F1E: KIM::ModelImplementation::InitializeParameterizedModel(KIM::LengthUnit, KIM::EnergyUnit, KIM::ChargeUnit, KIM::TemperatureUnit, KIM::TimeUnit, KIM::Collections*) (in /usr/local/lib/libkim-api.so.2.2.1) ==1416796== by 0x12BEB2E18: KIM::ModelImplementation::ModelCreate(KIM::Numbering, KIM::LengthUnit, KIM::EnergyUnit, KIM::ChargeUnit, KIM::TemperatureUnit, KIM::TimeUnit, std::__cxx11::basic_string, std::allocator > const&) (in /usr/local/lib/libkim-api.so.2.2.1) ==1416796== by 0x12BEB7762: KIM::ModelImplementation::Create(KIM::Numbering, KIM::LengthUnit, KIM::EnergyUnit, KIM::ChargeUnit, KIM::TemperatureUnit, KIM::TimeUnit, std::__cxx11::basic_string, std::allocator > const&, int*, KIM::ModelImplementation**) (in /usr/local/lib/libkim-api.so.2.2.1) ==1416796== by 0x12BE67246: KIM::Model::Create(KIM::Numbering, KIM::LengthUnit, KIM::EnergyUnit, KIM::ChargeUnit, KIM::TemperatureUnit, KIM::TimeUnit, std::__cxx11::basic_string, std::allocator > const&, int*, KIM::Model**) (in /usr/local/lib/libkim-api.so.2.2.1) ==1416796== by 0x12BDC76C7: void pybind11::cpp_function::initialize, std::allocator > const&)#21}, pybind11::tuple, KIM::Numbering const&, KIM::LengthUnit const&, KIM::EnergyUnit const&, KIM::ChargeUnit const&, KIM::TemperatureUnit const&, KIM::TimeUnit const&, std::__cxx11::basic_string, std::allocator > const&, pybind11::name, pybind11::scope, pybind11::sibling, char [115], pybind11::arg, char [115], char [115], char [115], char [115], char [115], char [115]>(pybind11_init_model(pybind11::module_&)::{lambda(KIM::Numbering const&, KIM::LengthUnit const&, KIM::EnergyUnit const&, KIM::ChargeUnit const&, KIM::TemperatureUnit const&, KIM::TimeUnit const&, std::__cxx11::basic_string, std::allocator > const&)#21}&&, pybind11::tuple (*)(KIM::Numbering const&, KIM::LengthUnit const&, KIM::EnergyUnit const&, KIM::ChargeUnit const&, KIM::TemperatureUnit const&, KIM::TimeUnit const&, std::__cxx11::basic_string, std::allocator > const&), pybind11::name const&, pybind11::scope const&, pybind11::sibling const&, char const (&) [115], pybind11::arg const&, char const (&) [115], char const (&) [115], char const (&) [115], char const (&) [115], char const (&) [115], char const (&) [115])::{lambda(pybind11::detail::function_call&)#3}::_FUN(pybind11::detail::function_call) (KIM_Model_bind.cpp:400) ==1416796== by 0x12BDDD17B: pybind11::cpp_function::dispatcher(_object*, _object*, _object*) (pybind11.h:929) ==1416796== Address 0xa8f7d560 is 0 bytes inside a block of size 1,024 alloc'd ==1416796== at 0x483C583: operator new[](unsigned long) (in /usr/lib/x86_64-linux-gnu/valgrind/vgpreload_memcheck-amd64-linux.so) ==1416796== by 0x12C77EB9B: MEAMC::ProcessParameterFile(_IO_FILE*, int) (in /mmfs1/scratch/bwaters2/bwaters/job-dc070124-b789-44af-9110-f8b5920a3935-007-5d7a1587-03c8-44cb-8618-ec04e465befc/VC_561022993723_004-and-MO_068985622065_001-1669765229/staged_job_files/repository/md/MEAM_LAMMPS__MD_249792265679_001/libkim-api-model-driver.so) ==1416796== by 0x12C657578: MEAMImplementation::ProcessParameterFiles(KIM::ModelDriverCreate*, int, _IO_FILE* const*) (in /mmfs1/scratch/bwaters2/bwaters/job-dc070124-b789-44af-9110-f8b5920a3935-007-5d7a1587-03c8-44cb-8618-ec04e465befc/VC_561022993723_004-and-MO_068985622065_001-1669765229/staged_job_files/repository/md/MEAM_LAMMPS__MD_249792265679_001/libkim-api-model-driver.so) ==1416796== by 0x12C658C83: MEAMImplementation::MEAMImplementation(KIM::ModelDriverCreate*, KIM::LengthUnit, KIM::EnergyUnit, KIM::ChargeUnit, KIM::TemperatureUnit, KIM::TimeUnit, int*) (in /mmfs1/scratch/bwaters2/bwaters/job-dc070124-b789-44af-9110-f8b5920a3935-007-5d7a1587-03c8-44cb-8618-ec04e465befc/VC_561022993723_004-and-MO_068985622065_001-1669765229/staged_job_files/repository/md/MEAM_LAMMPS__MD_249792265679_001/libkim-api-model-driver.so) ==1416796== by 0x12C641DE7: MEAM::MEAM(KIM::ModelDriverCreate*, KIM::LengthUnit, KIM::EnergyUnit, KIM::ChargeUnit, KIM::TemperatureUnit, KIM::TimeUnit, int*) (in /mmfs1/scratch/bwaters2/bwaters/job-dc070124-b789-44af-9110-f8b5920a3935-007-5d7a1587-03c8-44cb-8618-ec04e465befc/VC_561022993723_004-and-MO_068985622065_001-1669765229/staged_job_files/repository/md/MEAM_LAMMPS__MD_249792265679_001/libkim-api-model-driver.so) ==1416796== by 0x12C6455CE: ModelDriverCreateRoutine (in /mmfs1/scratch/bwaters2/bwaters/job-dc070124-b789-44af-9110-f8b5920a3935-007-5d7a1587-03c8-44cb-8618-ec04e465befc/VC_561022993723_004-and-MO_068985622065_001-1669765229/staged_job_files/repository/md/MEAM_LAMMPS__MD_249792265679_001/libkim-api-model-driver.so) ==1416796== by 0x12BEB1F1E: KIM::ModelImplementation::InitializeParameterizedModel(KIM::LengthUnit, KIM::EnergyUnit, KIM::ChargeUnit, KIM::TemperatureUnit, KIM::TimeUnit, KIM::Collections*) (in /usr/local/lib/libkim-api.so.2.2.1) ==1416796== by 0x12BEB2E18: KIM::ModelImplementation::ModelCreate(KIM::Numbering, KIM::LengthUnit, KIM::EnergyUnit, KIM::ChargeUnit, KIM::TemperatureUnit, KIM::TimeUnit, std::__cxx11::basic_string, std::allocator > const&) (in /usr/local/lib/libkim-api.so.2.2.1) ==1416796== by 0x12BEB7762: KIM::ModelImplementation::Create(KIM::Numbering, KIM::LengthUnit, KIM::EnergyUnit, KIM::ChargeUnit, KIM::TemperatureUnit, KIM::TimeUnit, std::__cxx11::basic_string, std::allocator > const&, int*, KIM::ModelImplementation**) (in /usr/local/lib/libkim-api.so.2.2.1) ==1416796== by 0x12BE67246: KIM::Model::Create(KIM::Numbering, KIM::LengthUnit, KIM::EnergyUnit, KIM::ChargeUnit, KIM::TemperatureUnit, KIM::TimeUnit, std::__cxx11::basic_string, std::allocator > const&, int*, KIM::Model**) (in /usr/local/lib/libkim-api.so.2.2.1) ==1416796== by 0x12BDC76C7: void pybind11::cpp_function::initialize, std::allocator > const&)#21}, pybind11::tuple, KIM::Numbering const&, KIM::LengthUnit const&, KIM::EnergyUnit const&, KIM::ChargeUnit const&, KIM::TemperatureUnit const&, KIM::TimeUnit const&, std::__cxx11::basic_string, std::allocator > const&, pybind11::name, pybind11::scope, pybind11::sibling, char [115], pybind11::arg, char [115], char [115], char [115], char [115], char [115], char [115]>(pybind11_init_model(pybind11::module_&)::{lambda(KIM::Numbering const&, KIM::LengthUnit const&, KIM::EnergyUnit const&, KIM::ChargeUnit const&, KIM::TemperatureUnit const&, KIM::TimeUnit const&, std::__cxx11::basic_string, std::allocator > const&)#21}&&, pybind11::tuple (*)(KIM::Numbering const&, KIM::LengthUnit const&, KIM::EnergyUnit const&, KIM::ChargeUnit const&, KIM::TemperatureUnit const&, KIM::TimeUnit const&, std::__cxx11::basic_string, std::allocator > const&), pybind11::name const&, pybind11::scope const&, pybind11::sibling const&, char const (&) [115], pybind11::arg const&, char const (&) [115], char const (&) [115], char const (&) [115], char const (&) [115], char const (&) [115], char const (&) [115])::{lambda(pybind11::detail::function_call&)#3}::_FUN(pybind11::detail::function_call) (KIM_Model_bind.cpp:400) ==1416796== by 0x12BDDD17B: pybind11::cpp_function::dispatcher(_object*, _object*, _object*) (pybind11.h:929) ==1416796== ==1416796== ==1416796== HEAP SUMMARY: ==1416796== in use at exit: 2,257,671 bytes in 1,702 blocks ==1416796== total heap usage: 93,062 allocs, 91,360 frees, 115,245,598 bytes allocated ==1416796== ==1416796== LEAK SUMMARY: ==1416796== definitely lost: 0 bytes in 0 blocks ==1416796== indirectly lost: 0 bytes in 0 blocks ==1416796== possibly lost: 180,827 bytes in 103 blocks ==1416796== still reachable: 2,076,812 bytes in 1,598 blocks ==1416796== of which reachable via heuristic: ==1416796== stdstring : 38 bytes in 1 blocks ==1416796== suppressed: 32 bytes in 1 blocks ==1416796== Rerun with --leak-check=full to see details of leaked memory ==1416796== ==1416796== For lists of detected and suppressed errors, rerun with: -s ==1416796== ERROR SUMMARY: 20 errors from 2 contexts (suppressed: 7935 from 547) ================================================================================ To pass this verification check the number of bytes that are "definitely lost" or "indirectly lost" must be zero. NOTE that Valgrind will typically report non-zero "possibly lost" bytes due to Python's internal memory allocation and garbage collection that it does not monitor. Full Valgrind output written to auxiliary file "valgrind.out" Grade: P Comment: No memory leak detected. === Verification check vc-memory-leak end (2022-11-30 10:17:17) ===