Enter a model name: === Verification check vc-memory-leak start (2022-11-30 10:16:29) === !!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!! !!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!! !!!!! !!!!! !!!!! VERIFICATION CHECK: vc-memory-leak !!!!! !!!!! !!!!! !!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!! !!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!! Description: Check that the model has no memory leaks. This is tested using the Valgrind memory debugging tool (http://valgrind.org) by performing a series of energy and force calculations on a randomly distorted face-centered cubic (FCC) cube base structure for both non-periodic and periodic boundary conditions. Separate configurations are tested for each species supported by the model, as well as one containing a random distribution of all species. Configurations used for testing are provided as auxiliary files. Author: Ellad Tadmor and Daniel S. Karls ----------------------------------------------------------------------------------------------------- Results for KIM Model : EAM_Dynamo_ZhouJohnsonWadley_2004_Pb__MO_116920074573_005 Supported species : Pb random seed = 13 lattice constant (orig) = 3.000 perturbation amplitude = 0.300 number unit cells per side = 2 ----------------------------------------------------------------------------------------------------- MONOATOMIC STRUCTURE (pbc=False)-- Species = Pb (Configuration in file "config-F-Pb.xyz") ----------------------------------------------------------------------------------------------------- Energy = 680.0181029755818 Forces: 1 -1.98882170e+01 -4.50176391e+01 -3.78438609e+01 2 -1.45786248e+01 4.40917043e+00 -4.75855156e+01 3 6.59233408e+00 -5.06655960e+01 -1.60594743e+01 4 -3.72429412e+01 2.55235474e+01 2.29409430e+01 5 8.81097376e+00 -5.28594903e+01 -2.60031284e+01 6 3.13108681e+01 4.14125650e+00 -3.73199103e+01 7 3.30870261e+01 -7.34815232e+01 -4.60542396e+01 8 -2.16363671e+01 -3.43153792e+01 4.87318037e+00 9 -4.62000169e+01 1.36190401e+00 -5.37686290e+01 10 -2.41726465e+01 7.75588904e+01 -6.06164995e+01 11 -4.69007639e+01 -3.49338981e+01 3.57558731e+01 12 -3.55741120e+01 3.77088218e+01 -6.22797068e+00 13 3.73557658e+01 -1.87856119e+01 -1.09325771e+02 14 2.55372845e+01 2.56659269e+01 -2.34971603e+01 15 8.64003487e+01 3.47507463e+00 5.66087394e+00 16 2.35346886e+01 9.07315393e+01 2.92186060e+01 17 -4.72777822e+01 -2.32090049e+01 -7.68215409e-03 18 -2.90956807e+00 2.01880826e+01 1.46537341e+01 19 6.64551837e+00 -3.78284491e+01 2.87461262e+01 20 -2.54988627e+01 1.22097370e+01 2.56202393e+01 21 -2.22517919e+01 -4.44900342e+01 1.91232742e+01 22 5.94370678e+01 4.41801386e+01 4.15833461e+01 23 2.30912513e+01 -1.39079675e+01 3.02453810e+01 24 1.95320021e+00 6.13653019e+00 3.16900671e+01 25 -5.10315572e+01 -3.28594800e+01 -1.53913359e+01 26 -1.92363955e+01 8.26112379e+01 -1.62442025e+01 27 2.06671912e+01 -6.43930546e+01 6.13605958e+01 28 -6.72040435e+01 6.25411238e+01 3.35384282e+01 29 1.58792130e+01 -4.01592269e+01 1.94452139e+01 30 3.24838943e+01 3.91959692e+01 7.82484917e+00 31 4.14830261e+01 -1.72343754e+01 3.05807911e+01 32 2.73340387e+01 4.65017799e+01 5.30838575e+01 MONOATOMIC STRUCTURE (pbc=True)-- Species = Pb (Configuration in file "config-T-Pb.xyz") ----------------------------------------------------------------------------------------------------- Energy = 680.0181029755818 Forces: 1 -1.98882170e+01 -4.50176391e+01 -3.78438609e+01 2 -1.45786248e+01 4.40917043e+00 -4.75855156e+01 3 6.59233408e+00 -5.06655960e+01 -1.60594743e+01 4 -3.72429412e+01 2.55235474e+01 2.29409430e+01 5 8.81097376e+00 -5.28594903e+01 -2.60031284e+01 6 3.13108681e+01 4.14125650e+00 -3.73199103e+01 7 3.30870261e+01 -7.34815232e+01 -4.60542396e+01 8 -2.16363671e+01 -3.43153792e+01 4.87318037e+00 9 -4.62000169e+01 1.36190401e+00 -5.37686290e+01 10 -2.41726465e+01 7.75588904e+01 -6.06164995e+01 11 -4.69007639e+01 -3.49338981e+01 3.57558731e+01 12 -3.55741120e+01 3.77088218e+01 -6.22797068e+00 13 3.73557658e+01 -1.87856119e+01 -1.09325771e+02 14 2.55372845e+01 2.56659269e+01 -2.34971603e+01 15 8.64003487e+01 3.47507463e+00 5.66087394e+00 16 2.35346886e+01 9.07315393e+01 2.92186060e+01 17 -4.72777822e+01 -2.32090049e+01 -7.68215409e-03 18 -2.90956807e+00 2.01880826e+01 1.46537341e+01 19 6.64551837e+00 -3.78284491e+01 2.87461262e+01 20 -2.54988627e+01 1.22097370e+01 2.56202393e+01 21 -2.22517919e+01 -4.44900342e+01 1.91232742e+01 22 5.94370678e+01 4.41801386e+01 4.15833461e+01 23 2.30912513e+01 -1.39079675e+01 3.02453810e+01 24 1.95320021e+00 6.13653019e+00 3.16900671e+01 25 -5.10315572e+01 -3.28594800e+01 -1.53913359e+01 26 -1.92363955e+01 8.26112379e+01 -1.62442025e+01 27 2.06671912e+01 -6.43930546e+01 6.13605958e+01 28 -6.72040435e+01 6.25411238e+01 3.35384282e+01 29 1.58792130e+01 -4.01592269e+01 1.94452139e+01 30 3.24838943e+01 3.91959692e+01 7.82484917e+00 31 4.14830261e+01 -1.72343754e+01 3.05807911e+01 32 2.73340387e+01 4.65017799e+01 5.30838575e+01 ================================================================================ VALGRIND OUTPUT ================================================================================ ==1304767== Memcheck, a memory error detector ==1304767== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. ==1304767== Using Valgrind-3.15.0 and LibVEX; rerun with -h for copyright info ==1304767== Command: python runner2.py EAM_Dynamo_ZhouJohnsonWadley_2004_Pb__MO_116920074573_005 ==1304767== ==1306144== Warning: invalid file descriptor 1024 in syscall close() ==1306144== Warning: invalid file descriptor 1025 in syscall close() ==1306144== Warning: invalid file descriptor 1026 in syscall close() ==1306144== Warning: invalid file descriptor 1027 in syscall close() ==1306144== Use --log-fd= to select an alternative log fd. ==1306144== Warning: invalid file descriptor 1028 in syscall close() ==1306144== Warning: invalid file descriptor 1029 in syscall close() ==1304767== ==1304767== HEAP SUMMARY: ==1304767== in use at exit: 2,257,559 bytes in 1,700 blocks ==1304767== total heap usage: 45,235 allocs, 43,535 frees, 61,329,579 bytes allocated ==1304767== ==1304767== LEAK SUMMARY: ==1304767== definitely lost: 0 bytes in 0 blocks ==1304767== indirectly lost: 0 bytes in 0 blocks ==1304767== possibly lost: 180,827 bytes in 103 blocks ==1304767== still reachable: 2,076,700 bytes in 1,596 blocks ==1304767== of which reachable via heuristic: ==1304767== stdstring : 38 bytes in 1 blocks ==1304767== suppressed: 32 bytes in 1 blocks ==1304767== Rerun with --leak-check=full to see details of leaked memory ==1304767== ==1304767== For lists of detected and suppressed errors, rerun with: -s ==1304767== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 7764 from 552) ================================================================================ To pass this verification check the number of bytes that are "definitely lost" or "indirectly lost" must be zero. NOTE that Valgrind will typically report non-zero "possibly lost" bytes due to Python's internal memory allocation and garbage collection that it does not monitor. Full Valgrind output written to auxiliary file "valgrind.out" Grade: P Comment: No memory leak detected. === Verification check vc-memory-leak end (2022-11-30 10:16:58) ===