Enter a model name: === Verification check vc-memory-leak start (2023-05-09 13:09:56) === !!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!! !!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!! !!!!! !!!!! !!!!! VERIFICATION CHECK: vc-memory-leak !!!!! !!!!! !!!!! !!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!! !!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!! Description: Check that the model has no memory leaks. This is tested using the Valgrind memory debugging tool (http://valgrind.org) by performing a series of energy and force calculations on a randomly distorted face-centered cubic (FCC) cube base structure for both non-periodic and periodic boundary conditions. Separate configurations are tested for each species supported by the model, as well as one containing a random distribution of all species. Configurations used for testing are provided as auxiliary files. Author: Ellad Tadmor and Daniel S. Karls ----------------------------------------------------------------------------------------------------- Results for KIM Model : MEAM_LAMMPS_AsadiZaeemNouranian_2015_Cu__MO_390178379548_002 Supported species : Cu random seed = 13 lattice constant (orig) = 3.000 perturbation amplitude = 0.300 number unit cells per side = 2 ----------------------------------------------------------------------------------------------------- MONOATOMIC STRUCTURE (pbc=False)-- Species = Cu (Configuration in file "config-F-Cu.xyz") ----------------------------------------------------------------------------------------------------- Energy = -10.674951828457402 Forces: 1 -1.50142041e-01 -5.84841456e+00 -6.27925616e+00 2 -7.22762070e+00 8.77832341e+00 -2.24391823e+00 3 4.33253899e+00 -1.07453523e+01 -7.16011997e+00 4 -5.72180980e+00 4.87595981e+00 3.86528419e+00 5 6.50626774e+00 -1.20443369e+01 -5.52211191e-01 6 2.64262468e+00 2.96544248e+00 -2.24526484e+00 7 7.81693923e-01 -2.15320060e+01 -2.23149789e+01 8 -1.06296090e+01 -8.47024141e+00 -4.91138455e+00 9 -9.63794998e+00 -5.18357417e+00 -1.23179905e+01 10 -5.70337926e+00 1.61326946e+01 -1.45621664e+01 11 3.94677193e+00 -1.04784743e+01 1.03361154e+01 12 -6.93416305e+00 1.06211425e+01 2.99014958e+00 13 -4.58699303e+00 -9.38113256e+00 -2.67890009e+01 14 3.96182331e+00 6.14033675e+00 -4.54506247e+00 15 2.63391650e+01 -4.92837528e+00 1.18267611e+01 16 5.02372851e+00 1.53290538e+01 9.29157989e+00 17 -9.48986784e+00 -4.85584874e+00 -4.05341012e+00 18 2.46226348e+00 9.80370800e+00 4.96318631e+00 19 3.59937181e+00 -5.96474489e+00 5.43634837e+00 20 -3.13702659e+00 6.26303499e+00 4.43103936e+00 21 -1.32493815e+01 -9.51519433e+00 1.99208530e+00 22 1.90315642e+01 2.25082596e+01 1.87563031e+01 23 4.83594236e+00 -1.00901235e+00 6.12800306e+00 24 1.66241265e+00 5.85613281e-01 2.55055961e+00 25 -3.62259385e+00 -7.59202605e+00 -6.87508130e-01 26 -3.33763736e+00 8.60723932e+00 -8.85155497e+00 27 6.69456865e+00 -2.19910447e+01 2.70467840e+00 28 -2.02782671e+01 1.94086113e+01 1.24176561e+01 29 -6.31326982e+00 -5.08026163e+00 2.63622859e+00 30 5.42961516e+00 1.01584181e+01 -4.81299264e+00 31 6.92445707e+00 -9.76738469e+00 8.93646793e+00 32 5.84490153e+00 1.22095870e+01 1.30643738e+01 MONOATOMIC STRUCTURE (pbc=True)-- Species = Cu (Configuration in file "config-T-Cu.xyz") ----------------------------------------------------------------------------------------------------- Energy = -10.674951828457402 Forces: 1 -1.50142041e-01 -5.84841456e+00 -6.27925616e+00 2 -7.22762070e+00 8.77832341e+00 -2.24391823e+00 3 4.33253899e+00 -1.07453523e+01 -7.16011997e+00 4 -5.72180980e+00 4.87595981e+00 3.86528419e+00 5 6.50626774e+00 -1.20443369e+01 -5.52211191e-01 6 2.64262468e+00 2.96544248e+00 -2.24526484e+00 7 7.81693923e-01 -2.15320060e+01 -2.23149789e+01 8 -1.06296090e+01 -8.47024141e+00 -4.91138455e+00 9 -9.63794998e+00 -5.18357417e+00 -1.23179905e+01 10 -5.70337926e+00 1.61326946e+01 -1.45621664e+01 11 3.94677193e+00 -1.04784743e+01 1.03361154e+01 12 -6.93416305e+00 1.06211425e+01 2.99014958e+00 13 -4.58699303e+00 -9.38113256e+00 -2.67890009e+01 14 3.96182331e+00 6.14033675e+00 -4.54506247e+00 15 2.63391650e+01 -4.92837528e+00 1.18267611e+01 16 5.02372851e+00 1.53290538e+01 9.29157989e+00 17 -9.48986784e+00 -4.85584874e+00 -4.05341012e+00 18 2.46226348e+00 9.80370800e+00 4.96318631e+00 19 3.59937181e+00 -5.96474489e+00 5.43634837e+00 20 -3.13702659e+00 6.26303499e+00 4.43103936e+00 21 -1.32493815e+01 -9.51519433e+00 1.99208530e+00 22 1.90315642e+01 2.25082596e+01 1.87563031e+01 23 4.83594236e+00 -1.00901235e+00 6.12800306e+00 24 1.66241265e+00 5.85613281e-01 2.55055961e+00 25 -3.62259385e+00 -7.59202605e+00 -6.87508130e-01 26 -3.33763736e+00 8.60723932e+00 -8.85155497e+00 27 6.69456865e+00 -2.19910447e+01 2.70467840e+00 28 -2.02782671e+01 1.94086113e+01 1.24176561e+01 29 -6.31326982e+00 -5.08026163e+00 2.63622859e+00 30 5.42961516e+00 1.01584181e+01 -4.81299264e+00 31 6.92445707e+00 -9.76738469e+00 8.93646793e+00 32 5.84490153e+00 1.22095870e+01 1.30643738e+01 ================================================================================ VALGRIND OUTPUT ================================================================================ ==889162== Memcheck, a memory error detector ==889162== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. ==889162== Using Valgrind-3.15.0 and LibVEX; rerun with -h for copyright info ==889162== Command: python runner2.py MEAM_LAMMPS_AsadiZaeemNouranian_2015_Cu__MO_390178379548_002 ==889162== ==889162== Mismatched free() / delete / delete [] ==889162== at 0x483CFBF: operator delete(void*) (in /usr/lib/x86_64-linux-gnu/valgrind/vgpreload_memcheck-amd64-linux.so) ==889162== by 0x14BE8C41C: MEAMC::ProcessLibraryFile(_IO_FILE*, int, std::vector, std::allocator >, std::allocator, std::allocator > > > const&) (in /mmfs1/scratch/bwaters2/bwaters/job-5cea2dc5-dc85-465b-adff-ab7286631169-007-2fd9cce6-cd0b-44ae-b607-cc48dbbfc8b3/VC_561022993723_004-and-MO_390178379548_002-1683659101/staged_job_files/repository/md/MEAM_LAMMPS__MD_249792265679_002/libkim-api-model-driver.so) ==889162== by 0x14BD5F4EF: MEAMImplementation::ProcessParameterFiles(KIM::ModelDriverCreate*, int, _IO_FILE* const*) (in /mmfs1/scratch/bwaters2/bwaters/job-5cea2dc5-dc85-465b-adff-ab7286631169-007-2fd9cce6-cd0b-44ae-b607-cc48dbbfc8b3/VC_561022993723_004-and-MO_390178379548_002-1683659101/staged_job_files/repository/md/MEAM_LAMMPS__MD_249792265679_002/libkim-api-model-driver.so) ==889162== by 0x14BD60C23: MEAMImplementation::MEAMImplementation(KIM::ModelDriverCreate*, KIM::LengthUnit, KIM::EnergyUnit, KIM::ChargeUnit, KIM::TemperatureUnit, KIM::TimeUnit, int*) (in /mmfs1/scratch/bwaters2/bwaters/job-5cea2dc5-dc85-465b-adff-ab7286631169-007-2fd9cce6-cd0b-44ae-b607-cc48dbbfc8b3/VC_561022993723_004-and-MO_390178379548_002-1683659101/staged_job_files/repository/md/MEAM_LAMMPS__MD_249792265679_002/libkim-api-model-driver.so) ==889162== by 0x14BD49DB7: MEAM::MEAM(KIM::ModelDriverCreate*, KIM::LengthUnit, KIM::EnergyUnit, KIM::ChargeUnit, KIM::TemperatureUnit, KIM::TimeUnit, int*) (in /mmfs1/scratch/bwaters2/bwaters/job-5cea2dc5-dc85-465b-adff-ab7286631169-007-2fd9cce6-cd0b-44ae-b607-cc48dbbfc8b3/VC_561022993723_004-and-MO_390178379548_002-1683659101/staged_job_files/repository/md/MEAM_LAMMPS__MD_249792265679_002/libkim-api-model-driver.so) ==889162== by 0x14BD4D59E: ModelDriverCreateRoutine (in /mmfs1/scratch/bwaters2/bwaters/job-5cea2dc5-dc85-465b-adff-ab7286631169-007-2fd9cce6-cd0b-44ae-b607-cc48dbbfc8b3/VC_561022993723_004-and-MO_390178379548_002-1683659101/staged_job_files/repository/md/MEAM_LAMMPS__MD_249792265679_002/libkim-api-model-driver.so) ==889162== by 0x14B5C5F1E: KIM::ModelImplementation::InitializeParameterizedModel(KIM::LengthUnit, KIM::EnergyUnit, KIM::ChargeUnit, KIM::TemperatureUnit, KIM::TimeUnit, KIM::Collections*) (in /usr/local/lib/libkim-api.so.2.2.1) ==889162== by 0x14B5C6E18: KIM::ModelImplementation::ModelCreate(KIM::Numbering, KIM::LengthUnit, KIM::EnergyUnit, KIM::ChargeUnit, KIM::TemperatureUnit, KIM::TimeUnit, std::__cxx11::basic_string, std::allocator > const&) (in /usr/local/lib/libkim-api.so.2.2.1) ==889162== by 0x14B5CB762: KIM::ModelImplementation::Create(KIM::Numbering, KIM::LengthUnit, KIM::EnergyUnit, KIM::ChargeUnit, KIM::TemperatureUnit, KIM::TimeUnit, std::__cxx11::basic_string, std::allocator > const&, int*, KIM::ModelImplementation**) (in /usr/local/lib/libkim-api.so.2.2.1) ==889162== by 0x14B57B246: KIM::Model::Create(KIM::Numbering, KIM::LengthUnit, KIM::EnergyUnit, KIM::ChargeUnit, KIM::TemperatureUnit, KIM::TimeUnit, std::__cxx11::basic_string, std::allocator > const&, int*, KIM::Model**) (in /usr/local/lib/libkim-api.so.2.2.1) ==889162== by 0x14B4DB647: void pybind11::cpp_function::initialize, std::allocator > const&)#21}, pybind11::tuple, KIM::Numbering const&, KIM::LengthUnit const&, KIM::EnergyUnit const&, KIM::ChargeUnit const&, KIM::TemperatureUnit const&, KIM::TimeUnit const&, std::__cxx11::basic_string, std::allocator > const&, pybind11::name, pybind11::scope, pybind11::sibling, char [115], pybind11::arg, char [115], char [115], char [115], char [115], char [115], char [115]>(pybind11_init_model(pybind11::module_&)::{lambda(KIM::Numbering const&, KIM::LengthUnit const&, KIM::EnergyUnit const&, KIM::ChargeUnit const&, KIM::TemperatureUnit const&, KIM::TimeUnit const&, std::__cxx11::basic_string, std::allocator > const&)#21}&&, pybind11::tuple (*)(KIM::Numbering const&, KIM::LengthUnit const&, KIM::EnergyUnit const&, KIM::ChargeUnit const&, KIM::TemperatureUnit const&, KIM::TimeUnit const&, std::__cxx11::basic_string, std::allocator > const&), pybind11::name const&, pybind11::scope const&, pybind11::sibling const&, char const (&) [115], pybind11::arg const&, char const (&) [115], char const (&) [115], char const (&) [115], char const (&) [115], char const (&) [115], char const (&) [115])::{lambda(pybind11::detail::function_call&)#3}::_FUN(pybind11::detail::function_call) (KIM_Model_bind.cpp:400) ==889162== by 0x14B4F114B: pybind11::cpp_function::dispatcher(_object*, _object*, _object*) (pybind11.h:939) ==889162== Address 0x14b075400 is 0 bytes inside a block of size 1,024 alloc'd ==889162== at 0x483C583: operator new[](unsigned long) (in /usr/lib/x86_64-linux-gnu/valgrind/vgpreload_memcheck-amd64-linux.so) ==889162== by 0x14BE8BBA1: MEAMC::ProcessLibraryFile(_IO_FILE*, int, std::vector, std::allocator >, std::allocator, std::allocator > > > const&) (in /mmfs1/scratch/bwaters2/bwaters/job-5cea2dc5-dc85-465b-adff-ab7286631169-007-2fd9cce6-cd0b-44ae-b607-cc48dbbfc8b3/VC_561022993723_004-and-MO_390178379548_002-1683659101/staged_job_files/repository/md/MEAM_LAMMPS__MD_249792265679_002/libkim-api-model-driver.so) ==889162== by 0x14BD5F4EF: MEAMImplementation::ProcessParameterFiles(KIM::ModelDriverCreate*, int, _IO_FILE* const*) (in /mmfs1/scratch/bwaters2/bwaters/job-5cea2dc5-dc85-465b-adff-ab7286631169-007-2fd9cce6-cd0b-44ae-b607-cc48dbbfc8b3/VC_561022993723_004-and-MO_390178379548_002-1683659101/staged_job_files/repository/md/MEAM_LAMMPS__MD_249792265679_002/libkim-api-model-driver.so) ==889162== by 0x14BD60C23: MEAMImplementation::MEAMImplementation(KIM::ModelDriverCreate*, KIM::LengthUnit, KIM::EnergyUnit, KIM::ChargeUnit, KIM::TemperatureUnit, KIM::TimeUnit, int*) (in /mmfs1/scratch/bwaters2/bwaters/job-5cea2dc5-dc85-465b-adff-ab7286631169-007-2fd9cce6-cd0b-44ae-b607-cc48dbbfc8b3/VC_561022993723_004-and-MO_390178379548_002-1683659101/staged_job_files/repository/md/MEAM_LAMMPS__MD_249792265679_002/libkim-api-model-driver.so) ==889162== by 0x14BD49DB7: MEAM::MEAM(KIM::ModelDriverCreate*, KIM::LengthUnit, KIM::EnergyUnit, KIM::ChargeUnit, KIM::TemperatureUnit, KIM::TimeUnit, int*) (in /mmfs1/scratch/bwaters2/bwaters/job-5cea2dc5-dc85-465b-adff-ab7286631169-007-2fd9cce6-cd0b-44ae-b607-cc48dbbfc8b3/VC_561022993723_004-and-MO_390178379548_002-1683659101/staged_job_files/repository/md/MEAM_LAMMPS__MD_249792265679_002/libkim-api-model-driver.so) ==889162== by 0x14BD4D59E: ModelDriverCreateRoutine (in /mmfs1/scratch/bwaters2/bwaters/job-5cea2dc5-dc85-465b-adff-ab7286631169-007-2fd9cce6-cd0b-44ae-b607-cc48dbbfc8b3/VC_561022993723_004-and-MO_390178379548_002-1683659101/staged_job_files/repository/md/MEAM_LAMMPS__MD_249792265679_002/libkim-api-model-driver.so) ==889162== by 0x14B5C5F1E: KIM::ModelImplementation::InitializeParameterizedModel(KIM::LengthUnit, KIM::EnergyUnit, KIM::ChargeUnit, KIM::TemperatureUnit, KIM::TimeUnit, KIM::Collections*) (in /usr/local/lib/libkim-api.so.2.2.1) ==889162== by 0x14B5C6E18: KIM::ModelImplementation::ModelCreate(KIM::Numbering, KIM::LengthUnit, KIM::EnergyUnit, KIM::ChargeUnit, KIM::TemperatureUnit, KIM::TimeUnit, std::__cxx11::basic_string, std::allocator > const&) (in /usr/local/lib/libkim-api.so.2.2.1) ==889162== by 0x14B5CB762: KIM::ModelImplementation::Create(KIM::Numbering, KIM::LengthUnit, KIM::EnergyUnit, KIM::ChargeUnit, KIM::TemperatureUnit, KIM::TimeUnit, std::__cxx11::basic_string, std::allocator > const&, int*, KIM::ModelImplementation**) (in /usr/local/lib/libkim-api.so.2.2.1) ==889162== by 0x14B57B246: KIM::Model::Create(KIM::Numbering, KIM::LengthUnit, KIM::EnergyUnit, KIM::ChargeUnit, KIM::TemperatureUnit, KIM::TimeUnit, std::__cxx11::basic_string, std::allocator > const&, int*, KIM::Model**) (in /usr/local/lib/libkim-api.so.2.2.1) ==889162== by 0x14B4DB647: void pybind11::cpp_function::initialize, std::allocator > const&)#21}, pybind11::tuple, KIM::Numbering const&, KIM::LengthUnit const&, KIM::EnergyUnit const&, KIM::ChargeUnit const&, KIM::TemperatureUnit const&, KIM::TimeUnit const&, std::__cxx11::basic_string, std::allocator > const&, pybind11::name, pybind11::scope, pybind11::sibling, char [115], pybind11::arg, char [115], char [115], char [115], char [115], char [115], char [115]>(pybind11_init_model(pybind11::module_&)::{lambda(KIM::Numbering const&, KIM::LengthUnit const&, KIM::EnergyUnit const&, KIM::ChargeUnit const&, KIM::TemperatureUnit const&, KIM::TimeUnit const&, std::__cxx11::basic_string, std::allocator > const&)#21}&&, pybind11::tuple (*)(KIM::Numbering const&, KIM::LengthUnit const&, KIM::EnergyUnit const&, KIM::ChargeUnit const&, KIM::TemperatureUnit const&, KIM::TimeUnit const&, std::__cxx11::basic_string, std::allocator > const&), pybind11::name const&, pybind11::scope const&, pybind11::sibling const&, char const (&) [115], pybind11::arg const&, char const (&) [115], char const (&) [115], char const (&) [115], char const (&) [115], char const (&) [115], char const (&) [115])::{lambda(pybind11::detail::function_call&)#3}::_FUN(pybind11::detail::function_call) (KIM_Model_bind.cpp:400) ==889162== by 0x14B4F114B: pybind11::cpp_function::dispatcher(_object*, _object*, _object*) (pybind11.h:939) ==889162== ==889162== Mismatched free() / delete / delete [] ==889162== at 0x483CFBF: operator delete(void*) (in /usr/lib/x86_64-linux-gnu/valgrind/vgpreload_memcheck-amd64-linux.so) ==889162== by 0x14BE86DDD: MEAMC::ProcessParameterFile(_IO_FILE*, int) (in /mmfs1/scratch/bwaters2/bwaters/job-5cea2dc5-dc85-465b-adff-ab7286631169-007-2fd9cce6-cd0b-44ae-b607-cc48dbbfc8b3/VC_561022993723_004-and-MO_390178379548_002-1683659101/staged_job_files/repository/md/MEAM_LAMMPS__MD_249792265679_002/libkim-api-model-driver.so) ==889162== by 0x14BD5F51A: MEAMImplementation::ProcessParameterFiles(KIM::ModelDriverCreate*, int, _IO_FILE* const*) (in /mmfs1/scratch/bwaters2/bwaters/job-5cea2dc5-dc85-465b-adff-ab7286631169-007-2fd9cce6-cd0b-44ae-b607-cc48dbbfc8b3/VC_561022993723_004-and-MO_390178379548_002-1683659101/staged_job_files/repository/md/MEAM_LAMMPS__MD_249792265679_002/libkim-api-model-driver.so) ==889162== by 0x14BD60C23: MEAMImplementation::MEAMImplementation(KIM::ModelDriverCreate*, KIM::LengthUnit, KIM::EnergyUnit, KIM::ChargeUnit, KIM::TemperatureUnit, KIM::TimeUnit, int*) (in /mmfs1/scratch/bwaters2/bwaters/job-5cea2dc5-dc85-465b-adff-ab7286631169-007-2fd9cce6-cd0b-44ae-b607-cc48dbbfc8b3/VC_561022993723_004-and-MO_390178379548_002-1683659101/staged_job_files/repository/md/MEAM_LAMMPS__MD_249792265679_002/libkim-api-model-driver.so) ==889162== by 0x14BD49DB7: MEAM::MEAM(KIM::ModelDriverCreate*, KIM::LengthUnit, KIM::EnergyUnit, KIM::ChargeUnit, KIM::TemperatureUnit, KIM::TimeUnit, int*) (in /mmfs1/scratch/bwaters2/bwaters/job-5cea2dc5-dc85-465b-adff-ab7286631169-007-2fd9cce6-cd0b-44ae-b607-cc48dbbfc8b3/VC_561022993723_004-and-MO_390178379548_002-1683659101/staged_job_files/repository/md/MEAM_LAMMPS__MD_249792265679_002/libkim-api-model-driver.so) ==889162== by 0x14BD4D59E: ModelDriverCreateRoutine (in /mmfs1/scratch/bwaters2/bwaters/job-5cea2dc5-dc85-465b-adff-ab7286631169-007-2fd9cce6-cd0b-44ae-b607-cc48dbbfc8b3/VC_561022993723_004-and-MO_390178379548_002-1683659101/staged_job_files/repository/md/MEAM_LAMMPS__MD_249792265679_002/libkim-api-model-driver.so) ==889162== by 0x14B5C5F1E: KIM::ModelImplementation::InitializeParameterizedModel(KIM::LengthUnit, KIM::EnergyUnit, KIM::ChargeUnit, KIM::TemperatureUnit, KIM::TimeUnit, KIM::Collections*) (in /usr/local/lib/libkim-api.so.2.2.1) ==889162== by 0x14B5C6E18: KIM::ModelImplementation::ModelCreate(KIM::Numbering, KIM::LengthUnit, KIM::EnergyUnit, KIM::ChargeUnit, KIM::TemperatureUnit, KIM::TimeUnit, std::__cxx11::basic_string, std::allocator > const&) (in /usr/local/lib/libkim-api.so.2.2.1) ==889162== by 0x14B5CB762: KIM::ModelImplementation::Create(KIM::Numbering, KIM::LengthUnit, KIM::EnergyUnit, KIM::ChargeUnit, KIM::TemperatureUnit, KIM::TimeUnit, std::__cxx11::basic_string, std::allocator > const&, int*, KIM::ModelImplementation**) (in /usr/local/lib/libkim-api.so.2.2.1) ==889162== by 0x14B57B246: KIM::Model::Create(KIM::Numbering, KIM::LengthUnit, KIM::EnergyUnit, KIM::ChargeUnit, KIM::TemperatureUnit, KIM::TimeUnit, std::__cxx11::basic_string, std::allocator > const&, int*, KIM::Model**) (in /usr/local/lib/libkim-api.so.2.2.1) ==889162== by 0x14B4DB647: void pybind11::cpp_function::initialize, std::allocator > const&)#21}, pybind11::tuple, KIM::Numbering const&, KIM::LengthUnit const&, KIM::EnergyUnit const&, KIM::ChargeUnit const&, KIM::TemperatureUnit const&, KIM::TimeUnit const&, std::__cxx11::basic_string, std::allocator > const&, pybind11::name, pybind11::scope, pybind11::sibling, char [115], pybind11::arg, char [115], char [115], char [115], char [115], char [115], char [115]>(pybind11_init_model(pybind11::module_&)::{lambda(KIM::Numbering const&, KIM::LengthUnit const&, KIM::EnergyUnit const&, KIM::ChargeUnit const&, KIM::TemperatureUnit const&, KIM::TimeUnit const&, std::__cxx11::basic_string, std::allocator > const&)#21}&&, pybind11::tuple (*)(KIM::Numbering const&, KIM::LengthUnit const&, KIM::EnergyUnit const&, KIM::ChargeUnit const&, KIM::TemperatureUnit const&, KIM::TimeUnit const&, std::__cxx11::basic_string, std::allocator > const&), pybind11::name const&, pybind11::scope const&, pybind11::sibling const&, char const (&) [115], pybind11::arg const&, char const (&) [115], char const (&) [115], char const (&) [115], char const (&) [115], char const (&) [115], char const (&) [115])::{lambda(pybind11::detail::function_call&)#3}::_FUN(pybind11::detail::function_call) (KIM_Model_bind.cpp:400) ==889162== by 0x14B4F114B: pybind11::cpp_function::dispatcher(_object*, _object*, _object*) (pybind11.h:939) ==889162== Address 0x14b076450 is 0 bytes inside a block of size 1,024 alloc'd ==889162== at 0x483C583: operator new[](unsigned long) (in /usr/lib/x86_64-linux-gnu/valgrind/vgpreload_memcheck-amd64-linux.so) ==889162== by 0x14BE86BBB: MEAMC::ProcessParameterFile(_IO_FILE*, int) (in /mmfs1/scratch/bwaters2/bwaters/job-5cea2dc5-dc85-465b-adff-ab7286631169-007-2fd9cce6-cd0b-44ae-b607-cc48dbbfc8b3/VC_561022993723_004-and-MO_390178379548_002-1683659101/staged_job_files/repository/md/MEAM_LAMMPS__MD_249792265679_002/libkim-api-model-driver.so) ==889162== by 0x14BD5F51A: MEAMImplementation::ProcessParameterFiles(KIM::ModelDriverCreate*, int, _IO_FILE* const*) (in /mmfs1/scratch/bwaters2/bwaters/job-5cea2dc5-dc85-465b-adff-ab7286631169-007-2fd9cce6-cd0b-44ae-b607-cc48dbbfc8b3/VC_561022993723_004-and-MO_390178379548_002-1683659101/staged_job_files/repository/md/MEAM_LAMMPS__MD_249792265679_002/libkim-api-model-driver.so) ==889162== by 0x14BD60C23: MEAMImplementation::MEAMImplementation(KIM::ModelDriverCreate*, KIM::LengthUnit, KIM::EnergyUnit, KIM::ChargeUnit, KIM::TemperatureUnit, KIM::TimeUnit, int*) (in /mmfs1/scratch/bwaters2/bwaters/job-5cea2dc5-dc85-465b-adff-ab7286631169-007-2fd9cce6-cd0b-44ae-b607-cc48dbbfc8b3/VC_561022993723_004-and-MO_390178379548_002-1683659101/staged_job_files/repository/md/MEAM_LAMMPS__MD_249792265679_002/libkim-api-model-driver.so) ==889162== by 0x14BD49DB7: MEAM::MEAM(KIM::ModelDriverCreate*, KIM::LengthUnit, KIM::EnergyUnit, KIM::ChargeUnit, KIM::TemperatureUnit, KIM::TimeUnit, int*) (in /mmfs1/scratch/bwaters2/bwaters/job-5cea2dc5-dc85-465b-adff-ab7286631169-007-2fd9cce6-cd0b-44ae-b607-cc48dbbfc8b3/VC_561022993723_004-and-MO_390178379548_002-1683659101/staged_job_files/repository/md/MEAM_LAMMPS__MD_249792265679_002/libkim-api-model-driver.so) ==889162== by 0x14BD4D59E: ModelDriverCreateRoutine (in /mmfs1/scratch/bwaters2/bwaters/job-5cea2dc5-dc85-465b-adff-ab7286631169-007-2fd9cce6-cd0b-44ae-b607-cc48dbbfc8b3/VC_561022993723_004-and-MO_390178379548_002-1683659101/staged_job_files/repository/md/MEAM_LAMMPS__MD_249792265679_002/libkim-api-model-driver.so) ==889162== by 0x14B5C5F1E: KIM::ModelImplementation::InitializeParameterizedModel(KIM::LengthUnit, KIM::EnergyUnit, KIM::ChargeUnit, KIM::TemperatureUnit, KIM::TimeUnit, KIM::Collections*) (in /usr/local/lib/libkim-api.so.2.2.1) ==889162== by 0x14B5C6E18: KIM::ModelImplementation::ModelCreate(KIM::Numbering, KIM::LengthUnit, KIM::EnergyUnit, KIM::ChargeUnit, KIM::TemperatureUnit, KIM::TimeUnit, std::__cxx11::basic_string, std::allocator > const&) (in /usr/local/lib/libkim-api.so.2.2.1) ==889162== by 0x14B5CB762: KIM::ModelImplementation::Create(KIM::Numbering, KIM::LengthUnit, KIM::EnergyUnit, KIM::ChargeUnit, KIM::TemperatureUnit, KIM::TimeUnit, std::__cxx11::basic_string, std::allocator > const&, int*, KIM::ModelImplementation**) (in /usr/local/lib/libkim-api.so.2.2.1) ==889162== by 0x14B57B246: KIM::Model::Create(KIM::Numbering, KIM::LengthUnit, KIM::EnergyUnit, KIM::ChargeUnit, KIM::TemperatureUnit, KIM::TimeUnit, std::__cxx11::basic_string, std::allocator > const&, int*, KIM::Model**) (in /usr/local/lib/libkim-api.so.2.2.1) ==889162== by 0x14B4DB647: void pybind11::cpp_function::initialize, std::allocator > const&)#21}, pybind11::tuple, KIM::Numbering const&, KIM::LengthUnit const&, KIM::EnergyUnit const&, KIM::ChargeUnit const&, KIM::TemperatureUnit const&, KIM::TimeUnit const&, std::__cxx11::basic_string, std::allocator > const&, pybind11::name, pybind11::scope, pybind11::sibling, char [115], pybind11::arg, char [115], char [115], char [115], char [115], char [115], char [115]>(pybind11_init_model(pybind11::module_&)::{lambda(KIM::Numbering const&, KIM::LengthUnit const&, KIM::EnergyUnit const&, KIM::ChargeUnit const&, KIM::TemperatureUnit const&, KIM::TimeUnit const&, std::__cxx11::basic_string, std::allocator > const&)#21}&&, pybind11::tuple (*)(KIM::Numbering const&, KIM::LengthUnit const&, KIM::EnergyUnit const&, KIM::ChargeUnit const&, KIM::TemperatureUnit const&, KIM::TimeUnit const&, std::__cxx11::basic_string, std::allocator > const&), pybind11::name const&, pybind11::scope const&, pybind11::sibling const&, char const (&) [115], pybind11::arg const&, char const (&) [115], char const (&) [115], char const (&) [115], char const (&) [115], char const (&) [115], char const (&) [115])::{lambda(pybind11::detail::function_call&)#3}::_FUN(pybind11::detail::function_call) (KIM_Model_bind.cpp:400) ==889162== by 0x14B4F114B: pybind11::cpp_function::dispatcher(_object*, _object*, _object*) (pybind11.h:939) ==889162== ==889162== Conditional jump or move depends on uninitialised value(s) ==889162== at 0x699E467: NpyIter_GetInnerFixedStrideArray (in /usr/local/lib/python3.8/dist-packages/numpy/core/_multiarray_umath.cpython-38-x86_64-linux-gnu.so) ==889162== by 0x6A9AACC: execute_ufunc_loop (in /usr/local/lib/python3.8/dist-packages/numpy/core/_multiarray_umath.cpython-38-x86_64-linux-gnu.so) ==889162== by 0x6AA3C47: ufunc_generic_fastcall (in /usr/local/lib/python3.8/dist-packages/numpy/core/_multiarray_umath.cpython-38-x86_64-linux-gnu.so) ==889162== by 0x5F3C40: ??? (in /usr/bin/python3.8) ==889162== by 0x5F3F04: PyObject_CallFunctionObjArgs (in /usr/bin/python3.8) ==889162== by 0x69B0AA5: array_add (in /usr/local/lib/python3.8/dist-packages/numpy/core/_multiarray_umath.cpython-38-x86_64-linux-gnu.so) ==889162== by 0x50F85E: PyNumber_Add (in /usr/bin/python3.8) ==889162== by 0x56C1D8: _PyEval_EvalFrameDefault (in /usr/bin/python3.8) ==889162== by 0x5F6835: _PyFunction_Vectorcall (in /usr/bin/python3.8) ==889162== by 0x56BBDE: _PyEval_EvalFrameDefault (in /usr/bin/python3.8) ==889162== by 0x569CE9: _PyEval_EvalCodeWithName (in /usr/bin/python3.8) ==889162== by 0x5F6A12: _PyFunction_Vectorcall (in /usr/bin/python3.8) ==889162== ==889162== ==889162== HEAP SUMMARY: ==889162== in use at exit: 2,273,255 bytes in 1,703 blocks ==889162== total heap usage: 60,774 allocs, 59,071 frees, 87,629,447 bytes allocated ==889162== ==889162== LEAK SUMMARY: ==889162== definitely lost: 0 bytes in 0 blocks ==889162== indirectly lost: 0 bytes in 0 blocks ==889162== possibly lost: 188,754 bytes in 107 blocks ==889162== still reachable: 2,084,469 bytes in 1,595 blocks ==889162== of which reachable via heuristic: ==889162== stdstring : 38 bytes in 1 blocks ==889162== suppressed: 32 bytes in 1 blocks ==889162== Rerun with --leak-check=full to see details of leaked memory ==889162== ==889162== Use --track-origins=yes to see where uninitialised values come from ==889162== For lists of detected and suppressed errors, rerun with: -s ==889162== ERROR SUMMARY: 15 errors from 3 contexts (suppressed: 17950 from 657) ================================================================================ To pass this verification check the number of bytes that are "definitely lost" or "indirectly lost" must be zero. NOTE that Valgrind will typically report non-zero "possibly lost" bytes due to Python's internal memory allocation and garbage collection that it does not monitor. Full Valgrind output written to auxiliary file "valgrind.out" Grade: P Comment: No memory leak detected. === Verification check vc-memory-leak end (2023-05-09 13:10:27) ===