Enter a model name: === Verification check vc-memory-leak start (2022-11-30 10:16:41) === !!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!! !!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!! !!!!! !!!!! !!!!! VERIFICATION CHECK: vc-memory-leak !!!!! !!!!! !!!!! !!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!! !!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!! Description: Check that the model has no memory leaks. This is tested using the Valgrind memory debugging tool (http://valgrind.org) by performing a series of energy and force calculations on a randomly distorted face-centered cubic (FCC) cube base structure for both non-periodic and periodic boundary conditions. Separate configurations are tested for each species supported by the model, as well as one containing a random distribution of all species. Configurations used for testing are provided as auxiliary files. Author: Ellad Tadmor and Daniel S. Karls ----------------------------------------------------------------------------------------------------- Results for KIM Model : MEAM_LAMMPS_KangEunJun_2014_SiC__MO_477506997611_001 Supported species : C Si random seed = 13 lattice constant (orig) = 3.000 perturbation amplitude = 0.300 number unit cells per side = 2 ----------------------------------------------------------------------------------------------------- MONOATOMIC STRUCTURE (pbc=False)-- Species = C (Configuration in file "config-F-C.xyz") ----------------------------------------------------------------------------------------------------- Energy = -129.64029816185317 Forces: 1 -1.11886295e-01 1.07931396e+00 1.52725211e+00 2 3.81501513e+00 2.43964292e+00 -3.76949665e+00 3 5.62704362e-01 -5.67494691e-01 1.12165312e+00 4 -1.44973632e+00 -2.82791558e-01 -1.10216124e+00 5 -5.44868448e-01 1.15075976e+00 1.33752378e+00 6 -1.27661320e+00 -5.46986423e-01 2.98921011e+00 7 -3.88917948e+00 8.83196609e-01 9.85469518e-01 8 -4.96990089e+00 1.77421842e+00 -4.81372946e-01 9 -6.90451348e-02 -2.02128459e-01 2.22707401e+00 10 -2.47491595e+00 8.73071877e+00 -6.44878050e+00 11 -4.58927323e+00 -3.66567144e+00 2.88743818e+00 12 -3.27920024e-01 -1.98718496e+00 -6.63195825e-02 13 5.33455119e+00 -2.78819063e+00 -2.41165552e+00 14 1.53473124e+00 -9.54387413e-01 -7.41222688e-01 15 1.03781313e+01 -5.49392978e+00 -3.43583487e+00 16 -1.30898450e+01 4.59428869e+00 3.26047542e+00 17 -3.96261628e+00 -2.10035446e+00 -4.24776905e+00 18 3.70501956e+00 2.53724311e-01 -4.71082596e+00 19 6.00877125e+00 -8.12426518e-01 2.36193289e+00 20 -3.69894449e+00 3.33327825e+00 6.90853826e+00 21 -1.79347495e+00 -7.66055401e+00 2.76936931e-01 22 9.36446130e+00 3.34094212e+00 3.22861070e+00 23 -1.85844279e+00 1.25404626e+00 -3.12791502e+00 24 -5.26573504e-01 1.14238998e-01 -8.46089320e-01 25 -9.61751149e-03 -1.69266761e+00 -2.39949619e+00 26 3.46442856e+00 2.64055512e+00 -3.19596438e+00 27 -1.79661417e+00 -2.62133535e+00 -1.69676965e+00 28 -2.26256939e+00 1.51022651e+00 3.63253792e+00 29 2.22506818e+00 -1.91071050e+00 5.89944802e+00 30 2.08759144e+00 9.79205198e-01 -9.90826553e-01 31 -1.09173667e+00 -9.22515600e-01 -9.62666408e-01 32 1.31330022e+00 1.30973496e-01 1.99106556e+00 MONOATOMIC STRUCTURE (pbc=True)-- Species = C (Configuration in file "config-T-C.xyz") ----------------------------------------------------------------------------------------------------- Energy = -129.64029816185317 Forces: 1 -1.11886295e-01 1.07931396e+00 1.52725211e+00 2 3.81501513e+00 2.43964292e+00 -3.76949665e+00 3 5.62704362e-01 -5.67494691e-01 1.12165312e+00 4 -1.44973632e+00 -2.82791558e-01 -1.10216124e+00 5 -5.44868448e-01 1.15075976e+00 1.33752378e+00 6 -1.27661320e+00 -5.46986423e-01 2.98921011e+00 7 -3.88917948e+00 8.83196609e-01 9.85469518e-01 8 -4.96990089e+00 1.77421842e+00 -4.81372946e-01 9 -6.90451348e-02 -2.02128459e-01 2.22707401e+00 10 -2.47491595e+00 8.73071877e+00 -6.44878050e+00 11 -4.58927323e+00 -3.66567144e+00 2.88743818e+00 12 -3.27920024e-01 -1.98718496e+00 -6.63195825e-02 13 5.33455119e+00 -2.78819063e+00 -2.41165552e+00 14 1.53473124e+00 -9.54387413e-01 -7.41222688e-01 15 1.03781313e+01 -5.49392978e+00 -3.43583487e+00 16 -1.30898450e+01 4.59428869e+00 3.26047542e+00 17 -3.96261628e+00 -2.10035446e+00 -4.24776905e+00 18 3.70501956e+00 2.53724311e-01 -4.71082596e+00 19 6.00877125e+00 -8.12426518e-01 2.36193289e+00 20 -3.69894449e+00 3.33327825e+00 6.90853826e+00 21 -1.79347495e+00 -7.66055401e+00 2.76936931e-01 22 9.36446130e+00 3.34094212e+00 3.22861070e+00 23 -1.85844279e+00 1.25404626e+00 -3.12791502e+00 24 -5.26573504e-01 1.14238998e-01 -8.46089320e-01 25 -9.61751149e-03 -1.69266761e+00 -2.39949619e+00 26 3.46442856e+00 2.64055512e+00 -3.19596438e+00 27 -1.79661417e+00 -2.62133535e+00 -1.69676965e+00 28 -2.26256939e+00 1.51022651e+00 3.63253792e+00 29 2.22506818e+00 -1.91071050e+00 5.89944802e+00 30 2.08759144e+00 9.79205198e-01 -9.90826553e-01 31 -1.09173667e+00 -9.22515600e-01 -9.62666408e-01 32 1.31330022e+00 1.30973496e-01 1.99106556e+00 MONOATOMIC STRUCTURE (pbc=False)-- Species = Si (Configuration in file "config-F-Si.xyz") ----------------------------------------------------------------------------------------------------- Energy = 175.11444109434393 Forces: 1 -2.65697074e+01 -2.68018151e+01 -3.34329617e+01 2 4.27085520e+01 -3.55611106e+01 -9.16989708e+00 3 4.78009171e+00 2.64751220e+00 2.41513390e+01 4 -5.78624871e+01 2.04381792e+01 -1.32938272e+01 5 7.68986134e+00 -1.66241919e+00 -2.42681546e+01 6 -4.59960795e+00 -1.70216134e+01 -2.25259087e+01 7 3.38041318e+00 -1.09167721e+01 -4.91496003e+00 8 1.56290951e+01 3.28339246e+01 -8.10333946e+00 9 -1.68646042e+01 -2.89431234e+00 -7.02504290e+00 10 -8.17030815e+00 1.06573127e+01 -2.42775367e+01 11 -4.05410267e+01 -8.83684630e+00 9.77422945e+00 12 -1.83313281e+01 3.05938767e+01 -1.44418180e+01 13 7.67511611e+00 -5.17083182e+01 -1.20483168e+01 14 2.81241390e+01 4.68511412e+00 2.34209125e+01 15 1.96392411e+01 3.72597267e+01 -2.97982948e+01 16 -1.61049071e+01 5.15258375e+01 1.23640264e+01 17 -3.72547233e+01 -3.73879023e+01 1.72120493e+01 18 2.20343592e+01 -4.31671547e+01 2.11294542e+01 19 1.02916878e+01 -5.42766337e+00 -2.28791075e+01 20 -2.40680569e+01 2.31658977e+01 1.09460778e+01 21 -1.97380547e+01 -1.15663689e+01 9.13010422e+00 22 4.09717898e+01 1.95204719e+01 -1.90278383e+01 23 1.73685800e+01 -2.59941289e+01 2.63159288e+01 24 8.77083429e+00 -1.37002900e+01 1.57053651e+01 25 4.02749055e+01 1.32323301e+00 -1.02412257e+01 26 -3.21481695e+01 3.80721001e+01 2.01975226e+01 27 -1.31086585e+01 -4.23441398e+00 2.91387116e+01 28 -6.20951510e+00 5.23397467e+00 7.90139257e+00 29 2.50209048e+01 -1.54347638e+01 -1.31419389e+01 30 2.18984697e+01 2.28389936e+01 4.98315371e-01 31 1.24802425e+01 -9.22139835e+00 2.03211325e+01 32 -7.16712849e+00 2.07411369e+01 2.03836069e+01 MONOATOMIC STRUCTURE (pbc=True)-- Species = Si (Configuration in file "config-T-Si.xyz") ----------------------------------------------------------------------------------------------------- Energy = 175.11444109434393 Forces: 1 -2.65697074e+01 -2.68018151e+01 -3.34329617e+01 2 4.27085520e+01 -3.55611106e+01 -9.16989708e+00 3 4.78009171e+00 2.64751220e+00 2.41513390e+01 4 -5.78624871e+01 2.04381792e+01 -1.32938272e+01 5 7.68986134e+00 -1.66241919e+00 -2.42681546e+01 6 -4.59960795e+00 -1.70216134e+01 -2.25259087e+01 7 3.38041318e+00 -1.09167721e+01 -4.91496003e+00 8 1.56290951e+01 3.28339246e+01 -8.10333946e+00 9 -1.68646042e+01 -2.89431234e+00 -7.02504290e+00 10 -8.17030815e+00 1.06573127e+01 -2.42775367e+01 11 -4.05410267e+01 -8.83684630e+00 9.77422945e+00 12 -1.83313281e+01 3.05938767e+01 -1.44418180e+01 13 7.67511611e+00 -5.17083182e+01 -1.20483168e+01 14 2.81241390e+01 4.68511412e+00 2.34209125e+01 15 1.96392411e+01 3.72597267e+01 -2.97982948e+01 16 -1.61049071e+01 5.15258375e+01 1.23640264e+01 17 -3.72547233e+01 -3.73879023e+01 1.72120493e+01 18 2.20343592e+01 -4.31671547e+01 2.11294542e+01 19 1.02916878e+01 -5.42766337e+00 -2.28791075e+01 20 -2.40680569e+01 2.31658977e+01 1.09460778e+01 21 -1.97380547e+01 -1.15663689e+01 9.13010422e+00 22 4.09717898e+01 1.95204719e+01 -1.90278383e+01 23 1.73685800e+01 -2.59941289e+01 2.63159288e+01 24 8.77083429e+00 -1.37002900e+01 1.57053651e+01 25 4.02749055e+01 1.32323301e+00 -1.02412257e+01 26 -3.21481695e+01 3.80721001e+01 2.01975226e+01 27 -1.31086585e+01 -4.23441398e+00 2.91387116e+01 28 -6.20951510e+00 5.23397467e+00 7.90139257e+00 29 2.50209048e+01 -1.54347638e+01 -1.31419389e+01 30 2.18984697e+01 2.28389936e+01 4.98315371e-01 31 1.24802425e+01 -9.22139835e+00 2.03211325e+01 32 -7.16712849e+00 2.07411369e+01 2.03836069e+01 MIXED STRUCTURE (pbc=False)-- Species = C Si (Configuration in file "config-F-CSi.xyz") ----------------------------------------------------------------------------------------------------- Energy = -24.904203632685668 Forces: 1 -4.71800786e+00 1.49850259e+00 -2.22370736e+01 2 -3.26543927e+01 -7.29672445e+00 -4.50927731e+01 3 3.87657835e+00 -5.21332810e+01 3.53740396e+01 4 -1.23555289e+01 -1.57341716e+00 7.36596071e+00 5 -1.70237748e+01 1.68865299e+01 -6.35762878e+00 6 1.14087982e+01 7.52236188e-01 4.47458725e+00 7 1.33618349e+01 -4.49611890e+00 -7.32722421e+00 8 1.39343384e+01 9.60610323e+00 1.00998804e+01 9 -3.82055861e+00 -7.91183306e+00 -2.25090547e+00 10 6.93042029e+00 6.74026356e+00 -5.32983455e+00 11 1.02074337e+01 1.51678259e+01 -6.99946008e+00 12 -1.53282857e+01 -1.23452847e+01 -1.58791652e+01 13 -2.13261383e+01 3.74993713e+00 -1.62560680e+01 14 3.91998897e+01 -5.08358977e+00 3.09913214e+01 15 2.32590526e+01 2.14278417e+01 -2.40006333e+01 16 -2.41934260e+01 4.33374652e+00 -4.46331426e+00 17 -8.86832614e+00 -1.07541359e+01 2.85927091e+00 18 -1.89202277e+01 2.02673319e+01 -4.96246369e+01 19 -1.73063129e+01 -3.03574671e+01 5.58819674e+01 20 4.59169104e+01 -1.52757011e+01 -1.49177933e+01 21 -1.96542879e+00 -6.49518822e+00 3.16094340e+00 22 1.44262394e+00 7.81686141e+00 1.79501143e+00 23 3.18970584e+00 -1.21700305e+00 3.71635612e+00 24 -1.72626119e+00 8.12043656e+00 5.58388723e+00 25 -1.68088827e+01 1.91024112e+01 1.15150886e+00 26 5.32244287e+01 1.92239227e+01 -1.83335814e+01 27 8.52647550e+00 1.74824746e+00 3.46015371e+01 28 -3.90542377e+01 -2.60729083e+00 4.06321699e+01 29 -3.98255233e-01 -2.77608030e+00 -8.80288630e-01 30 1.93119817e+00 4.79763555e-01 2.29613211e+00 31 1.26849012e+00 2.71836830e-01 9.80777020e-01 32 -1.21013378e+00 3.12931707e+00 -1.01497006e+00 MIXED STRUCTURE (pbc=True)-- Species = C Si (Configuration in file "config-T-CSi.xyz") ----------------------------------------------------------------------------------------------------- Energy = -17.746433092754582 Forces: 1 2.59709985e+00 -1.28232161e+01 -2.31678707e+01 2 -5.05645000e+01 2.99010592e+00 3.25944602e+01 3 5.87693790e+00 -3.71893494e+01 3.57160113e+01 4 -1.39031383e+01 -1.09039155e+01 3.27465025e+00 5 -1.52915040e+01 3.10194726e+01 -3.26348695e+01 6 1.57597069e+01 5.16102746e+00 1.89994445e+00 7 -7.71784559e+00 4.94267817e+00 -2.21171791e+01 8 1.46417238e+01 9.71432538e+00 6.52450510e+00 9 -3.20197764e+00 -6.82703634e+00 -6.84902342e+00 10 -9.07172097e+00 -4.32120655e+00 -6.71065025e-01 11 1.16944874e+01 1.45081035e+01 -7.56629621e+00 12 2.85337263e+01 4.31536689e+00 9.99608019e+00 13 2.68908798e+00 -1.63464959e+01 -3.54826435e+00 14 3.35212959e+01 -6.10979768e+00 2.66955092e+01 15 6.55797903e+00 6.64867583e+00 -2.34941323e+01 16 -2.42701355e+01 8.35721804e-01 -7.00905462e+00 17 2.01825919e+00 -2.89911346e+00 1.26925017e+01 18 -1.28434302e+01 1.17839843e+01 -3.81007153e+01 19 1.96959073e+01 -3.41633954e+01 5.98842674e+01 20 3.56427086e+01 -1.49412246e+01 -7.95191464e+00 21 4.77778276e+00 8.71900132e-01 -7.22619041e-01 22 -9.01797838e+00 1.19908913e+01 2.75435816e+00 23 1.78694068e+00 -3.20141816e+00 5.81883218e+00 24 2.34427672e+01 2.57280552e+01 -1.08453784e+01 25 -1.17013689e+01 6.64085136e+00 7.88307031e+00 26 -1.60044259e+01 -4.53274501e+00 -3.97126357e+01 27 -1.22482594e+01 1.51831086e+01 -7.02350104e+00 28 -2.58972547e+01 -7.51956042e-01 2.24028637e+01 29 1.21982200e+00 -2.22100726e+00 5.47177556e-01 30 -3.20160356e-01 2.52210329e+00 2.83330343e+00 31 3.86876179e+00 -8.72804972e-02 -1.83837148e+00 32 -2.27129475e+00 2.46278611e+00 1.73535566e+00 ================================================================================ VALGRIND OUTPUT ================================================================================ ==1416797== Memcheck, a memory error detector ==1416797== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. ==1416797== Using Valgrind-3.15.0 and LibVEX; rerun with -h for copyright info ==1416797== Command: python runner2.py MEAM_LAMMPS_KangEunJun_2014_SiC__MO_477506997611_001 ==1416797== ==1418027== Warning: invalid file descriptor 1024 in syscall close() ==1418027== Warning: invalid file descriptor 1025 in syscall close() ==1418027== Warning: invalid file descriptor 1026 in syscall close() ==1418027== Warning: invalid file descriptor 1027 in syscall close() ==1418027== Use --log-fd= to select an alternative log fd. ==1418027== Warning: invalid file descriptor 1028 in syscall close() ==1418027== Warning: invalid file descriptor 1029 in syscall close() ==1416797== Mismatched free() / delete / delete [] ==1416797== at 0x483CFBF: operator delete(void*) (in /usr/lib/x86_64-linux-gnu/valgrind/vgpreload_memcheck-amd64-linux.so) ==1416797== by 0x12C78438C: MEAMC::ProcessLibraryFile(_IO_FILE*, int, std::vector, std::allocator >, std::allocator, std::allocator > > > const&) (in /mmfs1/scratch/bwaters2/bwaters/job-dc070124-b789-44af-9110-f8b5920a3935-007-5d7a1587-03c8-44cb-8618-ec04e465befc/VC_561022993723_004-and-MO_477506997611_001-1669765230/staged_job_files/repository/md/MEAM_LAMMPS__MD_249792265679_001/libkim-api-model-driver.so) ==1416797== by 0x12C65754D: MEAMImplementation::ProcessParameterFiles(KIM::ModelDriverCreate*, int, _IO_FILE* const*) (in /mmfs1/scratch/bwaters2/bwaters/job-dc070124-b789-44af-9110-f8b5920a3935-007-5d7a1587-03c8-44cb-8618-ec04e465befc/VC_561022993723_004-and-MO_477506997611_001-1669765230/staged_job_files/repository/md/MEAM_LAMMPS__MD_249792265679_001/libkim-api-model-driver.so) ==1416797== by 0x12C658C83: MEAMImplementation::MEAMImplementation(KIM::ModelDriverCreate*, KIM::LengthUnit, KIM::EnergyUnit, KIM::ChargeUnit, KIM::TemperatureUnit, KIM::TimeUnit, int*) (in /mmfs1/scratch/bwaters2/bwaters/job-dc070124-b789-44af-9110-f8b5920a3935-007-5d7a1587-03c8-44cb-8618-ec04e465befc/VC_561022993723_004-and-MO_477506997611_001-1669765230/staged_job_files/repository/md/MEAM_LAMMPS__MD_249792265679_001/libkim-api-model-driver.so) ==1416797== by 0x12C641DE7: MEAM::MEAM(KIM::ModelDriverCreate*, KIM::LengthUnit, KIM::EnergyUnit, KIM::ChargeUnit, KIM::TemperatureUnit, KIM::TimeUnit, int*) (in /mmfs1/scratch/bwaters2/bwaters/job-dc070124-b789-44af-9110-f8b5920a3935-007-5d7a1587-03c8-44cb-8618-ec04e465befc/VC_561022993723_004-and-MO_477506997611_001-1669765230/staged_job_files/repository/md/MEAM_LAMMPS__MD_249792265679_001/libkim-api-model-driver.so) ==1416797== by 0x12C6455CE: ModelDriverCreateRoutine (in /mmfs1/scratch/bwaters2/bwaters/job-dc070124-b789-44af-9110-f8b5920a3935-007-5d7a1587-03c8-44cb-8618-ec04e465befc/VC_561022993723_004-and-MO_477506997611_001-1669765230/staged_job_files/repository/md/MEAM_LAMMPS__MD_249792265679_001/libkim-api-model-driver.so) ==1416797== by 0x12BEB1F1E: KIM::ModelImplementation::InitializeParameterizedModel(KIM::LengthUnit, KIM::EnergyUnit, KIM::ChargeUnit, KIM::TemperatureUnit, KIM::TimeUnit, KIM::Collections*) (in /usr/local/lib/libkim-api.so.2.2.1) ==1416797== by 0x12BEB2E18: KIM::ModelImplementation::ModelCreate(KIM::Numbering, KIM::LengthUnit, KIM::EnergyUnit, KIM::ChargeUnit, KIM::TemperatureUnit, KIM::TimeUnit, std::__cxx11::basic_string, std::allocator > const&) (in /usr/local/lib/libkim-api.so.2.2.1) ==1416797== by 0x12BEB7762: KIM::ModelImplementation::Create(KIM::Numbering, KIM::LengthUnit, KIM::EnergyUnit, KIM::ChargeUnit, KIM::TemperatureUnit, KIM::TimeUnit, std::__cxx11::basic_string, std::allocator > const&, int*, KIM::ModelImplementation**) (in /usr/local/lib/libkim-api.so.2.2.1) ==1416797== by 0x12BE67246: KIM::Model::Create(KIM::Numbering, KIM::LengthUnit, KIM::EnergyUnit, KIM::ChargeUnit, KIM::TemperatureUnit, KIM::TimeUnit, std::__cxx11::basic_string, std::allocator > const&, int*, KIM::Model**) (in /usr/local/lib/libkim-api.so.2.2.1) ==1416797== by 0x12BDC76C7: void pybind11::cpp_function::initialize, std::allocator > const&)#21}, pybind11::tuple, KIM::Numbering const&, KIM::LengthUnit const&, KIM::EnergyUnit const&, KIM::ChargeUnit const&, KIM::TemperatureUnit const&, KIM::TimeUnit const&, std::__cxx11::basic_string, std::allocator > const&, pybind11::name, pybind11::scope, pybind11::sibling, char [115], pybind11::arg, char [115], char [115], char [115], char [115], char [115], char [115]>(pybind11_init_model(pybind11::module_&)::{lambda(KIM::Numbering const&, KIM::LengthUnit const&, KIM::EnergyUnit const&, KIM::ChargeUnit const&, KIM::TemperatureUnit const&, KIM::TimeUnit const&, std::__cxx11::basic_string, std::allocator > const&)#21}&&, pybind11::tuple (*)(KIM::Numbering const&, KIM::LengthUnit const&, KIM::EnergyUnit const&, KIM::ChargeUnit const&, KIM::TemperatureUnit const&, KIM::TimeUnit const&, std::__cxx11::basic_string, std::allocator > const&), pybind11::name const&, pybind11::scope const&, pybind11::sibling const&, char const (&) [115], pybind11::arg const&, char const (&) [115], char const (&) [115], char const (&) [115], char const (&) [115], char const (&) [115], char const (&) [115])::{lambda(pybind11::detail::function_call&)#3}::_FUN(pybind11::detail::function_call) (KIM_Model_bind.cpp:400) ==1416797== by 0x12BDDD17B: pybind11::cpp_function::dispatcher(_object*, _object*, _object*) (pybind11.h:929) ==1416797== Address 0xa8f7c530 is 0 bytes inside a block of size 1,024 alloc'd ==1416797== at 0x483C583: operator new[](unsigned long) (in /usr/lib/x86_64-linux-gnu/valgrind/vgpreload_memcheck-amd64-linux.so) ==1416797== by 0x12C783B11: MEAMC::ProcessLibraryFile(_IO_FILE*, int, std::vector, std::allocator >, std::allocator, std::allocator > > > const&) (in /mmfs1/scratch/bwaters2/bwaters/job-dc070124-b789-44af-9110-f8b5920a3935-007-5d7a1587-03c8-44cb-8618-ec04e465befc/VC_561022993723_004-and-MO_477506997611_001-1669765230/staged_job_files/repository/md/MEAM_LAMMPS__MD_249792265679_001/libkim-api-model-driver.so) ==1416797== by 0x12C65754D: MEAMImplementation::ProcessParameterFiles(KIM::ModelDriverCreate*, int, _IO_FILE* const*) (in /mmfs1/scratch/bwaters2/bwaters/job-dc070124-b789-44af-9110-f8b5920a3935-007-5d7a1587-03c8-44cb-8618-ec04e465befc/VC_561022993723_004-and-MO_477506997611_001-1669765230/staged_job_files/repository/md/MEAM_LAMMPS__MD_249792265679_001/libkim-api-model-driver.so) ==1416797== by 0x12C658C83: MEAMImplementation::MEAMImplementation(KIM::ModelDriverCreate*, KIM::LengthUnit, KIM::EnergyUnit, KIM::ChargeUnit, KIM::TemperatureUnit, KIM::TimeUnit, int*) (in /mmfs1/scratch/bwaters2/bwaters/job-dc070124-b789-44af-9110-f8b5920a3935-007-5d7a1587-03c8-44cb-8618-ec04e465befc/VC_561022993723_004-and-MO_477506997611_001-1669765230/staged_job_files/repository/md/MEAM_LAMMPS__MD_249792265679_001/libkim-api-model-driver.so) ==1416797== by 0x12C641DE7: MEAM::MEAM(KIM::ModelDriverCreate*, KIM::LengthUnit, KIM::EnergyUnit, KIM::ChargeUnit, KIM::TemperatureUnit, KIM::TimeUnit, int*) (in /mmfs1/scratch/bwaters2/bwaters/job-dc070124-b789-44af-9110-f8b5920a3935-007-5d7a1587-03c8-44cb-8618-ec04e465befc/VC_561022993723_004-and-MO_477506997611_001-1669765230/staged_job_files/repository/md/MEAM_LAMMPS__MD_249792265679_001/libkim-api-model-driver.so) ==1416797== by 0x12C6455CE: ModelDriverCreateRoutine (in /mmfs1/scratch/bwaters2/bwaters/job-dc070124-b789-44af-9110-f8b5920a3935-007-5d7a1587-03c8-44cb-8618-ec04e465befc/VC_561022993723_004-and-MO_477506997611_001-1669765230/staged_job_files/repository/md/MEAM_LAMMPS__MD_249792265679_001/libkim-api-model-driver.so) ==1416797== by 0x12BEB1F1E: KIM::ModelImplementation::InitializeParameterizedModel(KIM::LengthUnit, KIM::EnergyUnit, KIM::ChargeUnit, KIM::TemperatureUnit, KIM::TimeUnit, KIM::Collections*) (in /usr/local/lib/libkim-api.so.2.2.1) ==1416797== by 0x12BEB2E18: KIM::ModelImplementation::ModelCreate(KIM::Numbering, KIM::LengthUnit, KIM::EnergyUnit, KIM::ChargeUnit, KIM::TemperatureUnit, KIM::TimeUnit, std::__cxx11::basic_string, std::allocator > const&) (in /usr/local/lib/libkim-api.so.2.2.1) ==1416797== by 0x12BEB7762: KIM::ModelImplementation::Create(KIM::Numbering, KIM::LengthUnit, KIM::EnergyUnit, KIM::ChargeUnit, KIM::TemperatureUnit, KIM::TimeUnit, std::__cxx11::basic_string, std::allocator > const&, int*, KIM::ModelImplementation**) (in /usr/local/lib/libkim-api.so.2.2.1) ==1416797== by 0x12BE67246: KIM::Model::Create(KIM::Numbering, KIM::LengthUnit, KIM::EnergyUnit, KIM::ChargeUnit, KIM::TemperatureUnit, KIM::TimeUnit, std::__cxx11::basic_string, std::allocator > const&, int*, KIM::Model**) (in /usr/local/lib/libkim-api.so.2.2.1) ==1416797== by 0x12BDC76C7: void pybind11::cpp_function::initialize, std::allocator > const&)#21}, pybind11::tuple, KIM::Numbering const&, KIM::LengthUnit const&, KIM::EnergyUnit const&, KIM::ChargeUnit const&, KIM::TemperatureUnit const&, KIM::TimeUnit const&, std::__cxx11::basic_string, std::allocator > const&, pybind11::name, pybind11::scope, pybind11::sibling, char [115], pybind11::arg, char [115], char [115], char [115], char [115], char [115], char [115]>(pybind11_init_model(pybind11::module_&)::{lambda(KIM::Numbering const&, KIM::LengthUnit const&, KIM::EnergyUnit const&, KIM::ChargeUnit const&, KIM::TemperatureUnit const&, KIM::TimeUnit const&, std::__cxx11::basic_string, std::allocator > const&)#21}&&, pybind11::tuple (*)(KIM::Numbering const&, KIM::LengthUnit const&, KIM::EnergyUnit const&, KIM::ChargeUnit const&, KIM::TemperatureUnit const&, KIM::TimeUnit const&, std::__cxx11::basic_string, std::allocator > const&), pybind11::name const&, pybind11::scope const&, pybind11::sibling const&, char const (&) [115], pybind11::arg const&, char const (&) [115], char const (&) [115], char const (&) [115], char const (&) [115], char const (&) [115], char const (&) [115])::{lambda(pybind11::detail::function_call&)#3}::_FUN(pybind11::detail::function_call) (KIM_Model_bind.cpp:400) ==1416797== by 0x12BDDD17B: pybind11::cpp_function::dispatcher(_object*, _object*, _object*) (pybind11.h:929) ==1416797== ==1416797== Mismatched free() / delete / delete [] ==1416797== at 0x483CFBF: operator delete(void*) (in /usr/lib/x86_64-linux-gnu/valgrind/vgpreload_memcheck-amd64-linux.so) ==1416797== by 0x12C77EDBD: MEAMC::ProcessParameterFile(_IO_FILE*, int) (in /mmfs1/scratch/bwaters2/bwaters/job-dc070124-b789-44af-9110-f8b5920a3935-007-5d7a1587-03c8-44cb-8618-ec04e465befc/VC_561022993723_004-and-MO_477506997611_001-1669765230/staged_job_files/repository/md/MEAM_LAMMPS__MD_249792265679_001/libkim-api-model-driver.so) ==1416797== by 0x12C657578: MEAMImplementation::ProcessParameterFiles(KIM::ModelDriverCreate*, int, _IO_FILE* const*) (in /mmfs1/scratch/bwaters2/bwaters/job-dc070124-b789-44af-9110-f8b5920a3935-007-5d7a1587-03c8-44cb-8618-ec04e465befc/VC_561022993723_004-and-MO_477506997611_001-1669765230/staged_job_files/repository/md/MEAM_LAMMPS__MD_249792265679_001/libkim-api-model-driver.so) ==1416797== by 0x12C658C83: MEAMImplementation::MEAMImplementation(KIM::ModelDriverCreate*, KIM::LengthUnit, KIM::EnergyUnit, KIM::ChargeUnit, KIM::TemperatureUnit, KIM::TimeUnit, int*) (in /mmfs1/scratch/bwaters2/bwaters/job-dc070124-b789-44af-9110-f8b5920a3935-007-5d7a1587-03c8-44cb-8618-ec04e465befc/VC_561022993723_004-and-MO_477506997611_001-1669765230/staged_job_files/repository/md/MEAM_LAMMPS__MD_249792265679_001/libkim-api-model-driver.so) ==1416797== by 0x12C641DE7: MEAM::MEAM(KIM::ModelDriverCreate*, KIM::LengthUnit, KIM::EnergyUnit, KIM::ChargeUnit, KIM::TemperatureUnit, KIM::TimeUnit, int*) (in /mmfs1/scratch/bwaters2/bwaters/job-dc070124-b789-44af-9110-f8b5920a3935-007-5d7a1587-03c8-44cb-8618-ec04e465befc/VC_561022993723_004-and-MO_477506997611_001-1669765230/staged_job_files/repository/md/MEAM_LAMMPS__MD_249792265679_001/libkim-api-model-driver.so) ==1416797== by 0x12C6455CE: ModelDriverCreateRoutine (in /mmfs1/scratch/bwaters2/bwaters/job-dc070124-b789-44af-9110-f8b5920a3935-007-5d7a1587-03c8-44cb-8618-ec04e465befc/VC_561022993723_004-and-MO_477506997611_001-1669765230/staged_job_files/repository/md/MEAM_LAMMPS__MD_249792265679_001/libkim-api-model-driver.so) ==1416797== by 0x12BEB1F1E: KIM::ModelImplementation::InitializeParameterizedModel(KIM::LengthUnit, KIM::EnergyUnit, KIM::ChargeUnit, KIM::TemperatureUnit, KIM::TimeUnit, KIM::Collections*) (in /usr/local/lib/libkim-api.so.2.2.1) ==1416797== by 0x12BEB2E18: KIM::ModelImplementation::ModelCreate(KIM::Numbering, KIM::LengthUnit, KIM::EnergyUnit, KIM::ChargeUnit, KIM::TemperatureUnit, KIM::TimeUnit, std::__cxx11::basic_string, std::allocator > const&) (in /usr/local/lib/libkim-api.so.2.2.1) ==1416797== by 0x12BEB7762: KIM::ModelImplementation::Create(KIM::Numbering, KIM::LengthUnit, KIM::EnergyUnit, KIM::ChargeUnit, KIM::TemperatureUnit, KIM::TimeUnit, std::__cxx11::basic_string, std::allocator > const&, int*, KIM::ModelImplementation**) (in /usr/local/lib/libkim-api.so.2.2.1) ==1416797== by 0x12BE67246: KIM::Model::Create(KIM::Numbering, KIM::LengthUnit, KIM::EnergyUnit, KIM::ChargeUnit, KIM::TemperatureUnit, KIM::TimeUnit, std::__cxx11::basic_string, std::allocator > const&, int*, KIM::Model**) (in /usr/local/lib/libkim-api.so.2.2.1) ==1416797== by 0x12BDC76C7: void pybind11::cpp_function::initialize, std::allocator > const&)#21}, pybind11::tuple, KIM::Numbering const&, KIM::LengthUnit const&, KIM::EnergyUnit const&, KIM::ChargeUnit const&, KIM::TemperatureUnit const&, KIM::TimeUnit const&, std::__cxx11::basic_string, std::allocator > const&, pybind11::name, pybind11::scope, pybind11::sibling, char [115], pybind11::arg, char [115], char [115], char [115], char [115], char [115], char [115]>(pybind11_init_model(pybind11::module_&)::{lambda(KIM::Numbering const&, KIM::LengthUnit const&, KIM::EnergyUnit const&, KIM::ChargeUnit const&, KIM::TemperatureUnit const&, KIM::TimeUnit const&, std::__cxx11::basic_string, std::allocator > const&)#21}&&, pybind11::tuple (*)(KIM::Numbering const&, KIM::LengthUnit const&, KIM::EnergyUnit const&, KIM::ChargeUnit const&, KIM::TemperatureUnit const&, KIM::TimeUnit const&, std::__cxx11::basic_string, std::allocator > const&), pybind11::name const&, pybind11::scope const&, pybind11::sibling const&, char const (&) [115], pybind11::arg const&, char const (&) [115], char const (&) [115], char const (&) [115], char const (&) [115], char const (&) [115], char const (&) [115])::{lambda(pybind11::detail::function_call&)#3}::_FUN(pybind11::detail::function_call) (KIM_Model_bind.cpp:400) ==1416797== by 0x12BDDD17B: pybind11::cpp_function::dispatcher(_object*, _object*, _object*) (pybind11.h:929) ==1416797== Address 0xa8f7d770 is 0 bytes inside a block of size 1,024 alloc'd ==1416797== at 0x483C583: operator new[](unsigned long) (in /usr/lib/x86_64-linux-gnu/valgrind/vgpreload_memcheck-amd64-linux.so) ==1416797== by 0x12C77EB9B: MEAMC::ProcessParameterFile(_IO_FILE*, int) (in /mmfs1/scratch/bwaters2/bwaters/job-dc070124-b789-44af-9110-f8b5920a3935-007-5d7a1587-03c8-44cb-8618-ec04e465befc/VC_561022993723_004-and-MO_477506997611_001-1669765230/staged_job_files/repository/md/MEAM_LAMMPS__MD_249792265679_001/libkim-api-model-driver.so) ==1416797== by 0x12C657578: MEAMImplementation::ProcessParameterFiles(KIM::ModelDriverCreate*, int, _IO_FILE* const*) (in /mmfs1/scratch/bwaters2/bwaters/job-dc070124-b789-44af-9110-f8b5920a3935-007-5d7a1587-03c8-44cb-8618-ec04e465befc/VC_561022993723_004-and-MO_477506997611_001-1669765230/staged_job_files/repository/md/MEAM_LAMMPS__MD_249792265679_001/libkim-api-model-driver.so) ==1416797== by 0x12C658C83: MEAMImplementation::MEAMImplementation(KIM::ModelDriverCreate*, KIM::LengthUnit, KIM::EnergyUnit, KIM::ChargeUnit, KIM::TemperatureUnit, KIM::TimeUnit, int*) (in /mmfs1/scratch/bwaters2/bwaters/job-dc070124-b789-44af-9110-f8b5920a3935-007-5d7a1587-03c8-44cb-8618-ec04e465befc/VC_561022993723_004-and-MO_477506997611_001-1669765230/staged_job_files/repository/md/MEAM_LAMMPS__MD_249792265679_001/libkim-api-model-driver.so) ==1416797== by 0x12C641DE7: MEAM::MEAM(KIM::ModelDriverCreate*, KIM::LengthUnit, KIM::EnergyUnit, KIM::ChargeUnit, KIM::TemperatureUnit, KIM::TimeUnit, int*) (in /mmfs1/scratch/bwaters2/bwaters/job-dc070124-b789-44af-9110-f8b5920a3935-007-5d7a1587-03c8-44cb-8618-ec04e465befc/VC_561022993723_004-and-MO_477506997611_001-1669765230/staged_job_files/repository/md/MEAM_LAMMPS__MD_249792265679_001/libkim-api-model-driver.so) ==1416797== by 0x12C6455CE: ModelDriverCreateRoutine (in /mmfs1/scratch/bwaters2/bwaters/job-dc070124-b789-44af-9110-f8b5920a3935-007-5d7a1587-03c8-44cb-8618-ec04e465befc/VC_561022993723_004-and-MO_477506997611_001-1669765230/staged_job_files/repository/md/MEAM_LAMMPS__MD_249792265679_001/libkim-api-model-driver.so) ==1416797== by 0x12BEB1F1E: KIM::ModelImplementation::InitializeParameterizedModel(KIM::LengthUnit, KIM::EnergyUnit, KIM::ChargeUnit, KIM::TemperatureUnit, KIM::TimeUnit, KIM::Collections*) (in /usr/local/lib/libkim-api.so.2.2.1) ==1416797== by 0x12BEB2E18: KIM::ModelImplementation::ModelCreate(KIM::Numbering, KIM::LengthUnit, KIM::EnergyUnit, KIM::ChargeUnit, KIM::TemperatureUnit, KIM::TimeUnit, std::__cxx11::basic_string, std::allocator > const&) (in /usr/local/lib/libkim-api.so.2.2.1) ==1416797== by 0x12BEB7762: KIM::ModelImplementation::Create(KIM::Numbering, KIM::LengthUnit, KIM::EnergyUnit, KIM::ChargeUnit, KIM::TemperatureUnit, KIM::TimeUnit, std::__cxx11::basic_string, std::allocator > const&, int*, KIM::ModelImplementation**) (in /usr/local/lib/libkim-api.so.2.2.1) ==1416797== by 0x12BE67246: KIM::Model::Create(KIM::Numbering, KIM::LengthUnit, KIM::EnergyUnit, KIM::ChargeUnit, KIM::TemperatureUnit, KIM::TimeUnit, std::__cxx11::basic_string, std::allocator > const&, int*, KIM::Model**) (in /usr/local/lib/libkim-api.so.2.2.1) ==1416797== by 0x12BDC76C7: void pybind11::cpp_function::initialize, std::allocator > const&)#21}, pybind11::tuple, KIM::Numbering const&, KIM::LengthUnit const&, KIM::EnergyUnit const&, KIM::ChargeUnit const&, KIM::TemperatureUnit const&, KIM::TimeUnit const&, std::__cxx11::basic_string, std::allocator > const&, pybind11::name, pybind11::scope, pybind11::sibling, char [115], pybind11::arg, char [115], char [115], char [115], char [115], char [115], char [115]>(pybind11_init_model(pybind11::module_&)::{lambda(KIM::Numbering const&, KIM::LengthUnit const&, KIM::EnergyUnit const&, KIM::ChargeUnit const&, KIM::TemperatureUnit const&, KIM::TimeUnit const&, std::__cxx11::basic_string, std::allocator > const&)#21}&&, pybind11::tuple (*)(KIM::Numbering const&, KIM::LengthUnit const&, KIM::EnergyUnit const&, KIM::ChargeUnit const&, KIM::TemperatureUnit const&, KIM::TimeUnit const&, std::__cxx11::basic_string, std::allocator > const&), pybind11::name const&, pybind11::scope const&, pybind11::sibling const&, char const (&) [115], pybind11::arg const&, char const (&) [115], char const (&) [115], char const (&) [115], char const (&) [115], char const (&) [115], char const (&) [115])::{lambda(pybind11::detail::function_call&)#3}::_FUN(pybind11::detail::function_call) (KIM_Model_bind.cpp:400) ==1416797== by 0x12BDDD17B: pybind11::cpp_function::dispatcher(_object*, _object*, _object*) (pybind11.h:929) ==1416797== ==1416797== ==1416797== HEAP SUMMARY: ==1416797== in use at exit: 2,257,687 bytes in 1,702 blocks ==1416797== total heap usage: 93,212 allocs, 91,510 frees, 115,240,368 bytes allocated ==1416797== ==1416797== LEAK SUMMARY: ==1416797== definitely lost: 0 bytes in 0 blocks ==1416797== indirectly lost: 0 bytes in 0 blocks ==1416797== possibly lost: 180,827 bytes in 103 blocks ==1416797== still reachable: 2,076,828 bytes in 1,598 blocks ==1416797== of which reachable via heuristic: ==1416797== stdstring : 38 bytes in 1 blocks ==1416797== suppressed: 32 bytes in 1 blocks ==1416797== Rerun with --leak-check=full to see details of leaked memory ==1416797== ==1416797== For lists of detected and suppressed errors, rerun with: -s ==1416797== ERROR SUMMARY: 20 errors from 2 contexts (suppressed: 7946 from 540) ================================================================================ To pass this verification check the number of bytes that are "definitely lost" or "indirectly lost" must be zero. NOTE that Valgrind will typically report non-zero "possibly lost" bytes due to Python's internal memory allocation and garbage collection that it does not monitor. Full Valgrind output written to auxiliary file "valgrind.out" Grade: P Comment: No memory leak detected. === Verification check vc-memory-leak end (2022-11-30 10:17:18) ===