Enter a model name: === Verification check vc-memory-leak start (2025-07-10 16:18:25) === !!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!! !!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!! !!!!! !!!!! !!!!! VERIFICATION CHECK: vc-memory-leak !!!!! !!!!! !!!!! !!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!! !!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!! Description: Check that the model has no memory leaks. This is tested using the Valgrind memory debugging tool (http://valgrind.org) by performing a series of energy and force calculations on a randomly distorted face-centered cubic (FCC) cube base structure for both non-periodic and periodic boundary conditions. Separate configurations are tested for each species supported by the model, as well as one containing a random distribution of all species. Configurations used for testing are provided as auxiliary files. Author: Ellad Tadmor and Daniel S. Karls ----------------------------------------------------------------------------------------------------- Results for KIM Model : EAM_Dynamo_FoilesBaskesDaw_1986Universal3_Au__MO_559016907324_001 Supported species : Au random seed = 13 lattice constant (orig) = 3.000 perturbation amplitude = 0.300 number unit cells per side = 2 ----------------------------------------------------------------------------------------------------- MONOATOMIC STRUCTURE (pbc=False)-- Species = Au (Configuration in file "config-F-Au.xyz") ----------------------------------------------------------------------------------------------------- Energy = 219.18640198409003 Forces: 1 -1.65081236e+01 -3.30143151e+01 -3.71221132e+01 2 -1.11993716e+01 1.86221597e+01 -2.94288583e+01 3 1.43143531e+01 -2.85199298e+01 -3.22469769e-01 4 -2.46423445e+01 2.96617334e+01 1.85709440e+01 5 1.98992046e+01 -3.85390551e+01 -7.79622993e+00 6 1.29936708e+01 -6.08066330e+00 -1.79268647e+01 7 1.88779448e+01 -5.95940137e+01 -5.36833845e+01 8 -3.74467586e+01 -3.53041001e+01 -3.58712935e+00 9 -2.60381749e+01 -1.07151123e+01 -3.98542886e+01 10 -9.41035738e+00 4.55490188e+01 -4.47678435e+01 11 -2.28313749e+01 -2.77799275e+01 2.29474124e+01 12 -2.57242365e+01 2.45158159e+01 1.44411807e+01 13 -4.35592941e+00 -1.37417423e+01 -8.67285963e+01 14 1.67468591e+01 1.76752742e+01 -1.22737621e+01 15 8.60778601e+01 9.52764513e+00 1.30625030e+01 16 1.37413743e+01 6.62116837e+01 2.36245434e+01 17 -4.05623881e+01 -2.13933143e+01 1.50443948e-01 18 1.55540947e+01 1.77475217e+01 -5.90011442e+00 19 1.13709914e+01 -2.44442201e+01 2.48284892e+01 20 -1.74399215e+01 3.90538662e+00 2.02628191e+01 21 -2.05519596e+01 -2.56415067e+01 1.82407679e+01 22 4.83741375e+01 3.28928539e+01 4.56974454e+01 23 7.26749517e+00 -4.76791829e+00 1.09247301e+01 24 5.01768856e+00 -1.27208791e+00 1.58121518e+01 25 -3.88894337e+01 -1.39371718e+01 -3.07353476e+01 26 -1.10038479e+01 4.76825356e+01 -1.76145020e+01 27 2.90296203e+01 -5.24423517e+01 4.53034629e+01 28 -5.47792003e+01 5.41448270e+01 2.49628886e+01 29 -1.26206263e+01 -1.62241337e+01 2.24015526e+01 30 2.23307752e+01 2.71577463e+01 1.40906010e+00 31 3.30896222e+01 -1.36328908e+01 2.91574310e+01 32 1.93183569e+01 3.17502526e+01 3.59436783e+01 MONOATOMIC STRUCTURE (pbc=True)-- Species = Au (Configuration in file "config-T-Au.xyz") ----------------------------------------------------------------------------------------------------- Energy = 219.18640198409003 Forces: 1 -1.65081236e+01 -3.30143151e+01 -3.71221132e+01 2 -1.11993716e+01 1.86221597e+01 -2.94288583e+01 3 1.43143531e+01 -2.85199298e+01 -3.22469769e-01 4 -2.46423445e+01 2.96617334e+01 1.85709440e+01 5 1.98992046e+01 -3.85390551e+01 -7.79622993e+00 6 1.29936708e+01 -6.08066330e+00 -1.79268647e+01 7 1.88779448e+01 -5.95940137e+01 -5.36833845e+01 8 -3.74467586e+01 -3.53041001e+01 -3.58712935e+00 9 -2.60381749e+01 -1.07151123e+01 -3.98542886e+01 10 -9.41035738e+00 4.55490188e+01 -4.47678435e+01 11 -2.28313749e+01 -2.77799275e+01 2.29474124e+01 12 -2.57242365e+01 2.45158159e+01 1.44411807e+01 13 -4.35592941e+00 -1.37417423e+01 -8.67285963e+01 14 1.67468591e+01 1.76752742e+01 -1.22737621e+01 15 8.60778601e+01 9.52764513e+00 1.30625030e+01 16 1.37413743e+01 6.62116837e+01 2.36245434e+01 17 -4.05623881e+01 -2.13933143e+01 1.50443948e-01 18 1.55540947e+01 1.77475217e+01 -5.90011442e+00 19 1.13709914e+01 -2.44442201e+01 2.48284892e+01 20 -1.74399215e+01 3.90538662e+00 2.02628191e+01 21 -2.05519596e+01 -2.56415067e+01 1.82407679e+01 22 4.83741375e+01 3.28928539e+01 4.56974454e+01 23 7.26749517e+00 -4.76791829e+00 1.09247301e+01 24 5.01768856e+00 -1.27208791e+00 1.58121518e+01 25 -3.88894337e+01 -1.39371718e+01 -3.07353476e+01 26 -1.10038479e+01 4.76825356e+01 -1.76145020e+01 27 2.90296203e+01 -5.24423517e+01 4.53034629e+01 28 -5.47792003e+01 5.41448270e+01 2.49628886e+01 29 -1.26206263e+01 -1.62241337e+01 2.24015526e+01 30 2.23307752e+01 2.71577463e+01 1.40906010e+00 31 3.30896222e+01 -1.36328908e+01 2.91574310e+01 32 1.93183569e+01 3.17502526e+01 3.59436783e+01 ================================================================================ VALGRIND OUTPUT ================================================================================ ==29565== Memcheck, a memory error detector ==29565== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. ==29565== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info ==29565== Command: python runner2.py EAM_Dynamo_FoilesBaskesDaw_1986Universal3_Au__MO_559016907324_001 ==29565== ==29565== Invalid read of size 8 ==29565== at 0x40286A0: strncmp (strcmp.S:170) ==29565== by 0x400668D: is_dst (dl-load.c:216) ==29565== by 0x400810E: _dl_dst_count (dl-load.c:253) ==29565== by 0x400810E: expand_dynamic_string_token (dl-load.c:395) ==29565== by 0x40082B7: fillin_rpath.isra.0 (dl-load.c:483) ==29565== by 0x4008602: decompose_rpath (dl-load.c:654) ==29565== by 0x400A8C8: cache_rpath (dl-load.c:696) ==29565== by 0x400A8C8: cache_rpath (dl-load.c:677) ==29565== by 0x400A8C8: _dl_map_object (dl-load.c:2117) ==29565== by 0x4003494: openaux (dl-deps.c:64) ==29565== by 0x4B08A97: _dl_catch_exception (dl-error-skeleton.c:208) ==29565== by 0x4003C7B: _dl_map_object_deps (dl-deps.c:248) ==29565== by 0x400EA0E: dl_open_worker_begin (dl-open.c:592) ==29565== by 0x4B08A97: _dl_catch_exception (dl-error-skeleton.c:208) ==29565== by 0x400DF99: dl_open_worker (dl-open.c:782) ==29565== Address 0x56cc881 is 1 bytes inside a block of size 8 alloc'd ==29565== at 0x4848899: malloc (in /usr/libexec/valgrind/vgpreload_memcheck-amd64-linux.so) ==29565== by 0x40271DF: malloc (rtld-malloc.h:56) ==29565== by 0x40271DF: strdup (strdup.c:42) ==29565== by 0x4008594: decompose_rpath (dl-load.c:629) ==29565== by 0x400A8C8: cache_rpath (dl-load.c:696) ==29565== by 0x400A8C8: cache_rpath (dl-load.c:677) ==29565== by 0x400A8C8: _dl_map_object (dl-load.c:2117) ==29565== by 0x4003494: openaux (dl-deps.c:64) ==29565== by 0x4B08A97: _dl_catch_exception (dl-error-skeleton.c:208) ==29565== by 0x4003C7B: _dl_map_object_deps (dl-deps.c:248) ==29565== by 0x400EA0E: dl_open_worker_begin (dl-open.c:592) ==29565== by 0x4B08A97: _dl_catch_exception (dl-error-skeleton.c:208) ==29565== by 0x400DF99: dl_open_worker (dl-open.c:782) ==29565== by 0x4B08A97: _dl_catch_exception (dl-error-skeleton.c:208) ==29565== by 0x400E34D: _dl_open (dl-open.c:883) ==29565== ==29565== Invalid read of size 8 ==29565== at 0x40286A8: strncmp (strcmp.S:172) ==29565== by 0x400668D: is_dst (dl-load.c:216) ==29565== by 0x400810E: _dl_dst_count (dl-load.c:253) ==29565== by 0x400810E: expand_dynamic_string_token (dl-load.c:395) ==29565== by 0x40082B7: fillin_rpath.isra.0 (dl-load.c:483) ==29565== by 0x4008602: decompose_rpath (dl-load.c:654) ==29565== by 0x400A8C8: cache_rpath (dl-load.c:696) ==29565== by 0x400A8C8: cache_rpath (dl-load.c:677) ==29565== by 0x400A8C8: _dl_map_object (dl-load.c:2117) ==29565== by 0x4003494: openaux (dl-deps.c:64) ==29565== by 0x4B08A97: _dl_catch_exception (dl-error-skeleton.c:208) ==29565== by 0x4003C7B: _dl_map_object_deps (dl-deps.c:248) ==29565== by 0x400EA0E: dl_open_worker_begin (dl-open.c:592) ==29565== by 0x4B08A97: _dl_catch_exception (dl-error-skeleton.c:208) ==29565== by 0x400DF99: dl_open_worker (dl-open.c:782) ==29565== Address 0x56cc889 is 1 bytes after a block of size 8 alloc'd ==29565== at 0x4848899: malloc (in /usr/libexec/valgrind/vgpreload_memcheck-amd64-linux.so) ==29565== by 0x40271DF: malloc (rtld-malloc.h:56) ==29565== by 0x40271DF: strdup (strdup.c:42) ==29565== by 0x4008594: decompose_rpath (dl-load.c:629) ==29565== by 0x400A8C8: cache_rpath (dl-load.c:696) ==29565== by 0x400A8C8: cache_rpath (dl-load.c:677) ==29565== by 0x400A8C8: _dl_map_object (dl-load.c:2117) ==29565== by 0x4003494: openaux (dl-deps.c:64) ==29565== by 0x4B08A97: _dl_catch_exception (dl-error-skeleton.c:208) ==29565== by 0x4003C7B: _dl_map_object_deps (dl-deps.c:248) ==29565== by 0x400EA0E: dl_open_worker_begin (dl-open.c:592) ==29565== by 0x4B08A97: _dl_catch_exception (dl-error-skeleton.c:208) ==29565== by 0x400DF99: dl_open_worker (dl-open.c:782) ==29565== by 0x4B08A97: _dl_catch_exception (dl-error-skeleton.c:208) ==29565== by 0x400E34D: _dl_open (dl-open.c:883) ==29565== ==29565== Invalid read of size 8 ==29565== at 0x40286A0: strncmp (strcmp.S:170) ==29565== by 0x400668D: is_dst (dl-load.c:216) ==29565== by 0x4007F79: _dl_dst_substitute (dl-load.c:295) ==29565== by 0x40082B7: fillin_rpath.isra.0 (dl-load.c:483) ==29565== by 0x4008602: decompose_rpath (dl-load.c:654) ==29565== by 0x400A8C8: cache_rpath (dl-load.c:696) ==29565== by 0x400A8C8: cache_rpath (dl-load.c:677) ==29565== by 0x400A8C8: _dl_map_object (dl-load.c:2117) ==29565== by 0x4003494: openaux (dl-deps.c:64) ==29565== by 0x4B08A97: _dl_catch_exception (dl-error-skeleton.c:208) ==29565== by 0x4003C7B: _dl_map_object_deps (dl-deps.c:248) ==29565== by 0x400EA0E: dl_open_worker_begin (dl-open.c:592) ==29565== by 0x4B08A97: _dl_catch_exception (dl-error-skeleton.c:208) ==29565== by 0x400DF99: dl_open_worker (dl-open.c:782) ==29565== Address 0x56cc881 is 1 bytes inside a block of size 8 alloc'd ==29565== at 0x4848899: malloc (in /usr/libexec/valgrind/vgpreload_memcheck-amd64-linux.so) ==29565== by 0x40271DF: malloc (rtld-malloc.h:56) ==29565== by 0x40271DF: strdup (strdup.c:42) ==29565== by 0x4008594: decompose_rpath (dl-load.c:629) ==29565== by 0x400A8C8: cache_rpath (dl-load.c:696) ==29565== by 0x400A8C8: cache_rpath (dl-load.c:677) ==29565== by 0x400A8C8: _dl_map_object (dl-load.c:2117) ==29565== by 0x4003494: openaux (dl-deps.c:64) ==29565== by 0x4B08A97: _dl_catch_exception (dl-error-skeleton.c:208) ==29565== by 0x4003C7B: _dl_map_object_deps (dl-deps.c:248) ==29565== by 0x400EA0E: dl_open_worker_begin (dl-open.c:592) ==29565== by 0x4B08A97: _dl_catch_exception (dl-error-skeleton.c:208) ==29565== by 0x400DF99: dl_open_worker (dl-open.c:782) ==29565== by 0x4B08A97: _dl_catch_exception (dl-error-skeleton.c:208) ==29565== by 0x400E34D: _dl_open (dl-open.c:883) ==29565== ==29565== Invalid read of size 8 ==29565== at 0x40286A8: strncmp (strcmp.S:172) ==29565== by 0x400668D: is_dst (dl-load.c:216) ==29565== by 0x4007F79: _dl_dst_substitute (dl-load.c:295) ==29565== by 0x40082B7: fillin_rpath.isra.0 (dl-load.c:483) ==29565== by 0x4008602: decompose_rpath (dl-load.c:654) ==29565== by 0x400A8C8: cache_rpath (dl-load.c:696) ==29565== by 0x400A8C8: cache_rpath (dl-load.c:677) ==29565== by 0x400A8C8: _dl_map_object (dl-load.c:2117) ==29565== by 0x4003494: openaux (dl-deps.c:64) ==29565== by 0x4B08A97: _dl_catch_exception (dl-error-skeleton.c:208) ==29565== by 0x4003C7B: _dl_map_object_deps (dl-deps.c:248) ==29565== by 0x400EA0E: dl_open_worker_begin (dl-open.c:592) ==29565== by 0x4B08A97: _dl_catch_exception (dl-error-skeleton.c:208) ==29565== by 0x400DF99: dl_open_worker (dl-open.c:782) ==29565== Address 0x56cc889 is 1 bytes after a block of size 8 alloc'd ==29565== at 0x4848899: malloc (in /usr/libexec/valgrind/vgpreload_memcheck-amd64-linux.so) ==29565== by 0x40271DF: malloc (rtld-malloc.h:56) ==29565== by 0x40271DF: strdup (strdup.c:42) ==29565== by 0x4008594: decompose_rpath (dl-load.c:629) ==29565== by 0x400A8C8: cache_rpath (dl-load.c:696) ==29565== by 0x400A8C8: cache_rpath (dl-load.c:677) ==29565== by 0x400A8C8: _dl_map_object (dl-load.c:2117) ==29565== by 0x4003494: openaux (dl-deps.c:64) ==29565== by 0x4B08A97: _dl_catch_exception (dl-error-skeleton.c:208) ==29565== by 0x4003C7B: _dl_map_object_deps (dl-deps.c:248) ==29565== by 0x400EA0E: dl_open_worker_begin (dl-open.c:592) ==29565== by 0x4B08A97: _dl_catch_exception (dl-error-skeleton.c:208) ==29565== by 0x400DF99: dl_open_worker (dl-open.c:782) ==29565== by 0x4B08A97: _dl_catch_exception (dl-error-skeleton.c:208) ==29565== by 0x400E34D: _dl_open (dl-open.c:883) ==29565== ==29565== ==29565== HEAP SUMMARY: ==29565== in use at exit: 3,734,006 bytes in 5,931 blocks ==29565== total heap usage: 83,541 allocs, 77,610 frees, 287,773,412 bytes allocated ==29565== ==29565== LEAK SUMMARY: ==29565== definitely lost: 0 bytes in 0 blocks ==29565== indirectly lost: 0 bytes in 0 blocks ==29565== possibly lost: 158,559 bytes in 109 blocks ==29565== still reachable: 3,575,447 bytes in 5,822 blocks ==29565== of which reachable via heuristic: ==29565== stdstring : 4,256 bytes in 48 blocks ==29565== suppressed: 0 bytes in 0 blocks ==29565== Rerun with --leak-check=full to see details of leaked memory ==29565== ==29565== For lists of detected and suppressed errors, rerun with: -s ==29565== ERROR SUMMARY: 8 errors from 4 contexts (suppressed: 0 from 0) ================================================================================ To pass this verification check the number of bytes that are "definitely lost" or "indirectly lost" must be zero. NOTE that Valgrind will typically report non-zero "possibly lost" bytes due to Python's internal memory allocation and garbage collection that it does not monitor. Full Valgrind output written to auxiliary file "valgrind.out" Grade: P Comment: No memory leak detected. === Verification check vc-memory-leak end (2025-07-10 16:19:11) ===