Enter a model name: === Verification check vc-memory-leak start (2022-11-29 18:36:51) === !!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!! !!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!! !!!!! !!!!! !!!!! VERIFICATION CHECK: vc-memory-leak !!!!! !!!!! !!!!! !!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!! !!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!! Description: Check that the model has no memory leaks. This is tested using the Valgrind memory debugging tool (http://valgrind.org) by performing a series of energy and force calculations on a randomly distorted face-centered cubic (FCC) cube base structure for both non-periodic and periodic boundary conditions. Separate configurations are tested for each species supported by the model, as well as one containing a random distribution of all species. Configurations used for testing are provided as auxiliary files. Author: Ellad Tadmor and Daniel S. Karls ----------------------------------------------------------------------------------------------------- Results for KIM Model : EAM_Dynamo_ZhouJohnsonWadley_2004NISTretabulation_Ni__MO_593762436933_000 Supported species : Ni random seed = 13 lattice constant (orig) = 3.000 perturbation amplitude = 0.300 number unit cells per side = 2 ----------------------------------------------------------------------------------------------------- MONOATOMIC STRUCTURE (pbc=False)-- Species = Ni (Configuration in file "config-F-Ni.xyz") ----------------------------------------------------------------------------------------------------- Energy = -25.914218428198293 Forces: 1 -3.48812448e+00 -5.94137346e+00 -6.28131571e+00 2 -8.26466871e+00 1.40149863e+01 -6.47941559e+00 3 4.69812334e+00 -5.12668396e+00 1.71173201e-02 4 -5.02648354e+00 4.93063435e+00 4.61679196e+00 5 9.48566425e+00 -1.62752014e+01 -5.92316357e-01 6 4.37064529e+00 7.55116460e-01 -5.97355361e+00 7 3.11400769e+00 -2.28368754e+01 -2.30726644e+01 8 -1.21769824e+01 -1.06571007e+01 5.10413269e+00 9 -5.22750986e+00 -6.33036156e+00 -1.03556685e+01 10 -4.36049577e+00 1.16926845e+01 -1.39453197e+01 11 -4.12876488e+00 -8.93921893e+00 4.12020564e+00 12 -5.95501312e+00 7.89671046e+00 4.59680531e+00 13 -8.90654143e+00 -7.29857088e+00 -3.42022764e+01 14 5.00381095e+00 6.88625354e+00 -4.18643034e+00 15 2.94030216e+01 -5.22962003e+00 9.57814326e+00 16 4.48551389e+00 2.31363555e+01 1.14401714e+01 17 -1.11506075e+01 -5.72405456e+00 -4.36448181e+00 18 6.53529301e+00 1.10659870e+01 -7.80442254e+00 19 6.36295887e+00 -1.11601467e+01 9.41122521e+00 20 -5.92700920e+00 6.08746776e+00 7.22009774e+00 21 -1.34276846e+01 -6.06709547e+00 1.93696434e+00 22 1.36071963e+01 2.02086259e+01 1.78284445e+01 23 5.13259839e+00 -4.82893509e-01 8.17008464e+00 24 -2.60443412e-02 -2.55233757e+00 3.55909067e+00 25 -9.95234533e+00 -6.53135405e+00 -3.13904283e+00 26 -4.26047016e+00 1.48449026e+01 -7.89438571e+00 27 1.22738771e+01 -2.62824809e+01 1.06028973e+01 28 -2.22735556e+01 2.06372513e+01 5.16945065e+00 29 -5.74841881e+00 -1.06544676e+01 3.40003246e+00 30 5.71121212e+00 1.01651773e+01 2.97710830e+00 31 1.32033859e+01 -5.23119806e+00 7.59781523e+00 32 6.91341107e+00 1.09988817e+01 1.09447149e+01 MONOATOMIC STRUCTURE (pbc=True)-- Species = Ni (Configuration in file "config-T-Ni.xyz") ----------------------------------------------------------------------------------------------------- Energy = -25.914218428198293 Forces: 1 -3.48812448e+00 -5.94137346e+00 -6.28131571e+00 2 -8.26466871e+00 1.40149863e+01 -6.47941559e+00 3 4.69812334e+00 -5.12668396e+00 1.71173201e-02 4 -5.02648354e+00 4.93063435e+00 4.61679196e+00 5 9.48566425e+00 -1.62752014e+01 -5.92316357e-01 6 4.37064529e+00 7.55116460e-01 -5.97355361e+00 7 3.11400769e+00 -2.28368754e+01 -2.30726644e+01 8 -1.21769824e+01 -1.06571007e+01 5.10413269e+00 9 -5.22750986e+00 -6.33036156e+00 -1.03556685e+01 10 -4.36049577e+00 1.16926845e+01 -1.39453197e+01 11 -4.12876488e+00 -8.93921893e+00 4.12020564e+00 12 -5.95501312e+00 7.89671046e+00 4.59680531e+00 13 -8.90654143e+00 -7.29857088e+00 -3.42022764e+01 14 5.00381095e+00 6.88625354e+00 -4.18643034e+00 15 2.94030216e+01 -5.22962003e+00 9.57814326e+00 16 4.48551389e+00 2.31363555e+01 1.14401714e+01 17 -1.11506075e+01 -5.72405456e+00 -4.36448181e+00 18 6.53529301e+00 1.10659870e+01 -7.80442254e+00 19 6.36295887e+00 -1.11601467e+01 9.41122521e+00 20 -5.92700920e+00 6.08746776e+00 7.22009774e+00 21 -1.34276846e+01 -6.06709547e+00 1.93696434e+00 22 1.36071963e+01 2.02086259e+01 1.78284445e+01 23 5.13259839e+00 -4.82893509e-01 8.17008464e+00 24 -2.60443412e-02 -2.55233757e+00 3.55909067e+00 25 -9.95234533e+00 -6.53135405e+00 -3.13904283e+00 26 -4.26047016e+00 1.48449026e+01 -7.89438571e+00 27 1.22738771e+01 -2.62824809e+01 1.06028973e+01 28 -2.22735556e+01 2.06372513e+01 5.16945065e+00 29 -5.74841881e+00 -1.06544676e+01 3.40003246e+00 30 5.71121212e+00 1.01651773e+01 2.97710830e+00 31 1.32033859e+01 -5.23119806e+00 7.59781523e+00 32 6.91341107e+00 1.09988817e+01 1.09447149e+01 ================================================================================ VALGRIND OUTPUT ================================================================================ ==178519== Memcheck, a memory error detector ==178519== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. ==178519== Using Valgrind-3.15.0 and LibVEX; rerun with -h for copyright info ==178519== Command: python runner2.py EAM_Dynamo_ZhouJohnsonWadley_2004NISTretabulation_Ni__MO_593762436933_000 ==178519== ==180063== Warning: invalid file descriptor 255988 in syscall close() ==180063== Warning: invalid file descriptor 255989 in syscall close() ==180063== Warning: invalid file descriptor 255990 in syscall close() ==180063== Warning: invalid file descriptor 255991 in syscall close() ==180063== Use --log-fd= to select an alternative log fd. ==180063== Warning: invalid file descriptor 255992 in syscall close() ==180063== Warning: invalid file descriptor 255993 in syscall close() ==178519== ==178519== HEAP SUMMARY: ==178519== in use at exit: 2,257,559 bytes in 1,700 blocks ==178519== total heap usage: 45,249 allocs, 43,549 frees, 52,850,915 bytes allocated ==178519== ==178519== LEAK SUMMARY: ==178519== definitely lost: 0 bytes in 0 blocks ==178519== indirectly lost: 0 bytes in 0 blocks ==178519== possibly lost: 180,827 bytes in 103 blocks ==178519== still reachable: 2,076,700 bytes in 1,596 blocks ==178519== of which reachable via heuristic: ==178519== stdstring : 38 bytes in 1 blocks ==178519== suppressed: 32 bytes in 1 blocks ==178519== Rerun with --leak-check=full to see details of leaked memory ==178519== ==178519== For lists of detected and suppressed errors, rerun with: -s ==178519== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 7912 from 578) ================================================================================ To pass this verification check the number of bytes that are "definitely lost" or "indirectly lost" must be zero. NOTE that Valgrind will typically report non-zero "possibly lost" bytes due to Python's internal memory allocation and garbage collection that it does not monitor. Full Valgrind output written to auxiliary file "valgrind.out" Grade: P Comment: No memory leak detected. === Verification check vc-memory-leak end (2022-11-29 18:39:19) ===