Enter a model name: === Verification check vc-memory-leak start (2023-05-10 00:09:19) === !!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!! !!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!! !!!!! !!!!! !!!!! VERIFICATION CHECK: vc-memory-leak !!!!! !!!!! !!!!! !!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!! !!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!! Description: Check that the model has no memory leaks. This is tested using the Valgrind memory debugging tool (http://valgrind.org) by performing a series of energy and force calculations on a randomly distorted face-centered cubic (FCC) cube base structure for both non-periodic and periodic boundary conditions. Separate configurations are tested for each species supported by the model, as well as one containing a random distribution of all species. Configurations used for testing are provided as auxiliary files. Author: Ellad Tadmor and Daniel S. Karls ----------------------------------------------------------------------------------------------------- Results for KIM Model : MEAM_LAMMPS_LeeBaskesKim_2001_V__MO_868364924829_001 Supported species : V random seed = 13 lattice constant (orig) = 3.000 perturbation amplitude = 0.300 number unit cells per side = 2 ----------------------------------------------------------------------------------------------------- MONOATOMIC STRUCTURE (pbc=False)-- Species = V (Configuration in file "config-F-V.xyz") ----------------------------------------------------------------------------------------------------- Energy = -47.28755534943047 Forces: 1 -2.11207460e+00 -4.74981436e+00 -4.24796680e+00 2 -4.79551284e+00 6.44526566e+00 -1.14545861e+01 3 3.28629326e-01 -9.02463453e+00 -2.56974137e-01 4 -7.90360942e+00 3.08847386e+00 2.25927832e+00 5 5.86379541e+00 -1.02736905e+01 -8.02103289e-01 6 4.63743620e+00 -2.83553203e+00 -5.63323127e+00 7 4.04520878e+00 -8.88461413e+00 -6.30471936e+00 8 -7.66025899e+00 -1.29074937e+01 -4.07594597e-01 9 -5.05496006e+00 -4.23457950e-01 -6.31820492e+00 10 -4.97169437e+00 1.08440590e+01 -1.03570815e+01 11 -7.73240960e+00 -7.29681962e+00 1.63946296e+00 12 -5.43720722e+00 4.35923876e+00 2.36136514e-01 13 3.17809301e+00 3.40424113e+00 -1.83418143e+01 14 3.80521987e+00 3.88233268e+00 -3.40521857e+00 15 2.02722947e+01 8.32784435e-01 -9.56099806e-02 16 1.72857536e+00 1.48940724e+01 1.20096111e+00 17 -8.22759501e+00 -5.97555860e+00 -1.48607475e-01 18 1.99304079e+00 4.75749143e+00 -2.31461685e+00 19 -8.23218695e-01 -7.27873312e+00 4.98992681e+00 20 -4.33305286e+00 1.88477301e+00 5.59818523e+00 21 -1.70733870e+00 -8.90049552e+00 1.79746835e+00 22 1.29536358e+01 3.02413022e+00 6.76569840e+00 23 1.91640732e+00 -9.20972112e-01 3.28217902e+00 24 3.07831432e+00 3.32853169e+00 6.41201144e+00 25 -7.83951714e+00 -1.68676922e+00 -2.67005476e+00 26 -3.92871865e+00 1.10544714e+01 1.92668896e+00 27 3.62886593e-01 -6.08211401e+00 9.45134416e+00 28 -7.11897705e+00 6.06926999e+00 4.64400545e+00 29 -1.72463699e+00 -3.48870968e+00 5.52564465e+00 30 6.92234039e+00 6.84154512e+00 9.94564716e-01 31 6.76603558e+00 -1.19695050e+00 7.67661297e+00 32 3.51886878e+00 7.21567885e+00 8.35821479e+00 MONOATOMIC STRUCTURE (pbc=True)-- Species = V (Configuration in file "config-T-V.xyz") ----------------------------------------------------------------------------------------------------- Energy = -47.28755534943047 Forces: 1 -2.11207460e+00 -4.74981436e+00 -4.24796680e+00 2 -4.79551284e+00 6.44526566e+00 -1.14545861e+01 3 3.28629326e-01 -9.02463453e+00 -2.56974137e-01 4 -7.90360942e+00 3.08847386e+00 2.25927832e+00 5 5.86379541e+00 -1.02736905e+01 -8.02103289e-01 6 4.63743620e+00 -2.83553203e+00 -5.63323127e+00 7 4.04520878e+00 -8.88461413e+00 -6.30471936e+00 8 -7.66025899e+00 -1.29074937e+01 -4.07594597e-01 9 -5.05496006e+00 -4.23457950e-01 -6.31820492e+00 10 -4.97169437e+00 1.08440590e+01 -1.03570815e+01 11 -7.73240960e+00 -7.29681962e+00 1.63946296e+00 12 -5.43720722e+00 4.35923876e+00 2.36136514e-01 13 3.17809301e+00 3.40424113e+00 -1.83418143e+01 14 3.80521987e+00 3.88233268e+00 -3.40521857e+00 15 2.02722947e+01 8.32784435e-01 -9.56099806e-02 16 1.72857536e+00 1.48940724e+01 1.20096111e+00 17 -8.22759501e+00 -5.97555860e+00 -1.48607475e-01 18 1.99304079e+00 4.75749143e+00 -2.31461685e+00 19 -8.23218695e-01 -7.27873312e+00 4.98992681e+00 20 -4.33305286e+00 1.88477301e+00 5.59818523e+00 21 -1.70733870e+00 -8.90049552e+00 1.79746835e+00 22 1.29536358e+01 3.02413022e+00 6.76569840e+00 23 1.91640732e+00 -9.20972112e-01 3.28217902e+00 24 3.07831432e+00 3.32853169e+00 6.41201144e+00 25 -7.83951714e+00 -1.68676922e+00 -2.67005476e+00 26 -3.92871865e+00 1.10544714e+01 1.92668896e+00 27 3.62886593e-01 -6.08211401e+00 9.45134416e+00 28 -7.11897705e+00 6.06926999e+00 4.64400545e+00 29 -1.72463699e+00 -3.48870968e+00 5.52564465e+00 30 6.92234039e+00 6.84154512e+00 9.94564716e-01 31 6.76603558e+00 -1.19695050e+00 7.67661297e+00 32 3.51886878e+00 7.21567885e+00 8.35821479e+00 ================================================================================ VALGRIND OUTPUT ================================================================================ ==2379386== Memcheck, a memory error detector ==2379386== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. ==2379386== Using Valgrind-3.15.0 and LibVEX; rerun with -h for copyright info ==2379386== Command: python runner2.py MEAM_LAMMPS_LeeBaskesKim_2001_V__MO_868364924829_001 ==2379386== ==2379386== Mismatched free() / delete / delete [] ==2379386== at 0x483CFBF: operator delete(void*) (in /usr/lib/x86_64-linux-gnu/valgrind/vgpreload_memcheck-amd64-linux.so) ==2379386== by 0x14BE8C41C: MEAMC::ProcessLibraryFile(_IO_FILE*, int, std::vector, std::allocator >, std::allocator, std::allocator > > > const&) (in /mmfs1/scratch/bwaters2/bwaters/job-1d8b66ad-3134-46c1-8d23-0090873d03be-007-11543798-0ecc-4aec-a2c7-fbea7f7d6130/VC_561022993723_004-and-MO_868364924829_001-1683690762/staged_job_files/repository/md/MEAM_LAMMPS__MD_249792265679_002/libkim-api-model-driver.so) ==2379386== by 0x14BD5F4EF: MEAMImplementation::ProcessParameterFiles(KIM::ModelDriverCreate*, int, _IO_FILE* const*) (in /mmfs1/scratch/bwaters2/bwaters/job-1d8b66ad-3134-46c1-8d23-0090873d03be-007-11543798-0ecc-4aec-a2c7-fbea7f7d6130/VC_561022993723_004-and-MO_868364924829_001-1683690762/staged_job_files/repository/md/MEAM_LAMMPS__MD_249792265679_002/libkim-api-model-driver.so) ==2379386== by 0x14BD60C23: MEAMImplementation::MEAMImplementation(KIM::ModelDriverCreate*, KIM::LengthUnit, KIM::EnergyUnit, KIM::ChargeUnit, KIM::TemperatureUnit, KIM::TimeUnit, int*) (in /mmfs1/scratch/bwaters2/bwaters/job-1d8b66ad-3134-46c1-8d23-0090873d03be-007-11543798-0ecc-4aec-a2c7-fbea7f7d6130/VC_561022993723_004-and-MO_868364924829_001-1683690762/staged_job_files/repository/md/MEAM_LAMMPS__MD_249792265679_002/libkim-api-model-driver.so) ==2379386== by 0x14BD49DB7: MEAM::MEAM(KIM::ModelDriverCreate*, KIM::LengthUnit, KIM::EnergyUnit, KIM::ChargeUnit, KIM::TemperatureUnit, KIM::TimeUnit, int*) (in /mmfs1/scratch/bwaters2/bwaters/job-1d8b66ad-3134-46c1-8d23-0090873d03be-007-11543798-0ecc-4aec-a2c7-fbea7f7d6130/VC_561022993723_004-and-MO_868364924829_001-1683690762/staged_job_files/repository/md/MEAM_LAMMPS__MD_249792265679_002/libkim-api-model-driver.so) ==2379386== by 0x14BD4D59E: ModelDriverCreateRoutine (in /mmfs1/scratch/bwaters2/bwaters/job-1d8b66ad-3134-46c1-8d23-0090873d03be-007-11543798-0ecc-4aec-a2c7-fbea7f7d6130/VC_561022993723_004-and-MO_868364924829_001-1683690762/staged_job_files/repository/md/MEAM_LAMMPS__MD_249792265679_002/libkim-api-model-driver.so) ==2379386== by 0x14B5C5F1E: KIM::ModelImplementation::InitializeParameterizedModel(KIM::LengthUnit, KIM::EnergyUnit, KIM::ChargeUnit, KIM::TemperatureUnit, KIM::TimeUnit, KIM::Collections*) (in /usr/local/lib/libkim-api.so.2.2.1) ==2379386== by 0x14B5C6E18: KIM::ModelImplementation::ModelCreate(KIM::Numbering, KIM::LengthUnit, KIM::EnergyUnit, KIM::ChargeUnit, KIM::TemperatureUnit, KIM::TimeUnit, std::__cxx11::basic_string, std::allocator > const&) (in /usr/local/lib/libkim-api.so.2.2.1) ==2379386== by 0x14B5CB762: KIM::ModelImplementation::Create(KIM::Numbering, KIM::LengthUnit, KIM::EnergyUnit, KIM::ChargeUnit, KIM::TemperatureUnit, KIM::TimeUnit, std::__cxx11::basic_string, std::allocator > const&, int*, KIM::ModelImplementation**) (in /usr/local/lib/libkim-api.so.2.2.1) ==2379386== by 0x14B57B246: KIM::Model::Create(KIM::Numbering, KIM::LengthUnit, KIM::EnergyUnit, KIM::ChargeUnit, KIM::TemperatureUnit, KIM::TimeUnit, std::__cxx11::basic_string, std::allocator > const&, int*, KIM::Model**) (in /usr/local/lib/libkim-api.so.2.2.1) ==2379386== by 0x14B4DB647: void pybind11::cpp_function::initialize, std::allocator > const&)#21}, pybind11::tuple, KIM::Numbering const&, KIM::LengthUnit const&, KIM::EnergyUnit const&, KIM::ChargeUnit const&, KIM::TemperatureUnit const&, KIM::TimeUnit const&, std::__cxx11::basic_string, std::allocator > const&, pybind11::name, pybind11::scope, pybind11::sibling, char [115], pybind11::arg, char [115], char [115], char [115], char [115], char [115], char [115]>(pybind11_init_model(pybind11::module_&)::{lambda(KIM::Numbering const&, KIM::LengthUnit const&, KIM::EnergyUnit const&, KIM::ChargeUnit const&, KIM::TemperatureUnit const&, KIM::TimeUnit const&, std::__cxx11::basic_string, std::allocator > const&)#21}&&, pybind11::tuple (*)(KIM::Numbering const&, KIM::LengthUnit const&, KIM::EnergyUnit const&, KIM::ChargeUnit const&, KIM::TemperatureUnit const&, KIM::TimeUnit const&, std::__cxx11::basic_string, std::allocator > const&), pybind11::name const&, pybind11::scope const&, pybind11::sibling const&, char const (&) [115], pybind11::arg const&, char const (&) [115], char const (&) [115], char const (&) [115], char const (&) [115], char const (&) [115], char const (&) [115])::{lambda(pybind11::detail::function_call&)#3}::_FUN(pybind11::detail::function_call) (KIM_Model_bind.cpp:400) ==2379386== by 0x14B4F114B: pybind11::cpp_function::dispatcher(_object*, _object*, _object*) (pybind11.h:939) ==2379386== Address 0x14b075000 is 0 bytes inside a block of size 1,024 alloc'd ==2379386== at 0x483C583: operator new[](unsigned long) (in /usr/lib/x86_64-linux-gnu/valgrind/vgpreload_memcheck-amd64-linux.so) ==2379386== by 0x14BE8BBA1: MEAMC::ProcessLibraryFile(_IO_FILE*, int, std::vector, std::allocator >, std::allocator, std::allocator > > > const&) (in /mmfs1/scratch/bwaters2/bwaters/job-1d8b66ad-3134-46c1-8d23-0090873d03be-007-11543798-0ecc-4aec-a2c7-fbea7f7d6130/VC_561022993723_004-and-MO_868364924829_001-1683690762/staged_job_files/repository/md/MEAM_LAMMPS__MD_249792265679_002/libkim-api-model-driver.so) ==2379386== by 0x14BD5F4EF: MEAMImplementation::ProcessParameterFiles(KIM::ModelDriverCreate*, int, _IO_FILE* const*) (in /mmfs1/scratch/bwaters2/bwaters/job-1d8b66ad-3134-46c1-8d23-0090873d03be-007-11543798-0ecc-4aec-a2c7-fbea7f7d6130/VC_561022993723_004-and-MO_868364924829_001-1683690762/staged_job_files/repository/md/MEAM_LAMMPS__MD_249792265679_002/libkim-api-model-driver.so) ==2379386== by 0x14BD60C23: MEAMImplementation::MEAMImplementation(KIM::ModelDriverCreate*, KIM::LengthUnit, KIM::EnergyUnit, KIM::ChargeUnit, KIM::TemperatureUnit, KIM::TimeUnit, int*) (in /mmfs1/scratch/bwaters2/bwaters/job-1d8b66ad-3134-46c1-8d23-0090873d03be-007-11543798-0ecc-4aec-a2c7-fbea7f7d6130/VC_561022993723_004-and-MO_868364924829_001-1683690762/staged_job_files/repository/md/MEAM_LAMMPS__MD_249792265679_002/libkim-api-model-driver.so) ==2379386== by 0x14BD49DB7: MEAM::MEAM(KIM::ModelDriverCreate*, KIM::LengthUnit, KIM::EnergyUnit, KIM::ChargeUnit, KIM::TemperatureUnit, KIM::TimeUnit, int*) (in /mmfs1/scratch/bwaters2/bwaters/job-1d8b66ad-3134-46c1-8d23-0090873d03be-007-11543798-0ecc-4aec-a2c7-fbea7f7d6130/VC_561022993723_004-and-MO_868364924829_001-1683690762/staged_job_files/repository/md/MEAM_LAMMPS__MD_249792265679_002/libkim-api-model-driver.so) ==2379386== by 0x14BD4D59E: ModelDriverCreateRoutine (in /mmfs1/scratch/bwaters2/bwaters/job-1d8b66ad-3134-46c1-8d23-0090873d03be-007-11543798-0ecc-4aec-a2c7-fbea7f7d6130/VC_561022993723_004-and-MO_868364924829_001-1683690762/staged_job_files/repository/md/MEAM_LAMMPS__MD_249792265679_002/libkim-api-model-driver.so) ==2379386== by 0x14B5C5F1E: KIM::ModelImplementation::InitializeParameterizedModel(KIM::LengthUnit, KIM::EnergyUnit, KIM::ChargeUnit, KIM::TemperatureUnit, KIM::TimeUnit, KIM::Collections*) (in /usr/local/lib/libkim-api.so.2.2.1) ==2379386== by 0x14B5C6E18: KIM::ModelImplementation::ModelCreate(KIM::Numbering, KIM::LengthUnit, KIM::EnergyUnit, KIM::ChargeUnit, KIM::TemperatureUnit, KIM::TimeUnit, std::__cxx11::basic_string, std::allocator > const&) (in /usr/local/lib/libkim-api.so.2.2.1) ==2379386== by 0x14B5CB762: KIM::ModelImplementation::Create(KIM::Numbering, KIM::LengthUnit, KIM::EnergyUnit, KIM::ChargeUnit, KIM::TemperatureUnit, KIM::TimeUnit, std::__cxx11::basic_string, std::allocator > const&, int*, KIM::ModelImplementation**) (in /usr/local/lib/libkim-api.so.2.2.1) ==2379386== by 0x14B57B246: KIM::Model::Create(KIM::Numbering, KIM::LengthUnit, KIM::EnergyUnit, KIM::ChargeUnit, KIM::TemperatureUnit, KIM::TimeUnit, std::__cxx11::basic_string, std::allocator > const&, int*, KIM::Model**) (in /usr/local/lib/libkim-api.so.2.2.1) ==2379386== by 0x14B4DB647: void pybind11::cpp_function::initialize, std::allocator > const&)#21}, pybind11::tuple, KIM::Numbering const&, KIM::LengthUnit const&, KIM::EnergyUnit const&, KIM::ChargeUnit const&, KIM::TemperatureUnit const&, KIM::TimeUnit const&, std::__cxx11::basic_string, std::allocator > const&, pybind11::name, pybind11::scope, pybind11::sibling, char [115], pybind11::arg, char [115], char [115], char [115], char [115], char [115], char [115]>(pybind11_init_model(pybind11::module_&)::{lambda(KIM::Numbering const&, KIM::LengthUnit const&, KIM::EnergyUnit const&, KIM::ChargeUnit const&, KIM::TemperatureUnit const&, KIM::TimeUnit const&, std::__cxx11::basic_string, std::allocator > const&)#21}&&, pybind11::tuple (*)(KIM::Numbering const&, KIM::LengthUnit const&, KIM::EnergyUnit const&, KIM::ChargeUnit const&, KIM::TemperatureUnit const&, KIM::TimeUnit const&, std::__cxx11::basic_string, std::allocator > const&), pybind11::name const&, pybind11::scope const&, pybind11::sibling const&, char const (&) [115], pybind11::arg const&, char const (&) [115], char const (&) [115], char const (&) [115], char const (&) [115], char const (&) [115], char const (&) [115])::{lambda(pybind11::detail::function_call&)#3}::_FUN(pybind11::detail::function_call) (KIM_Model_bind.cpp:400) ==2379386== by 0x14B4F114B: pybind11::cpp_function::dispatcher(_object*, _object*, _object*) (pybind11.h:939) ==2379386== ==2379386== Mismatched free() / delete / delete [] ==2379386== at 0x483CFBF: operator delete(void*) (in /usr/lib/x86_64-linux-gnu/valgrind/vgpreload_memcheck-amd64-linux.so) ==2379386== by 0x14BE86DDD: MEAMC::ProcessParameterFile(_IO_FILE*, int) (in /mmfs1/scratch/bwaters2/bwaters/job-1d8b66ad-3134-46c1-8d23-0090873d03be-007-11543798-0ecc-4aec-a2c7-fbea7f7d6130/VC_561022993723_004-and-MO_868364924829_001-1683690762/staged_job_files/repository/md/MEAM_LAMMPS__MD_249792265679_002/libkim-api-model-driver.so) ==2379386== by 0x14BD5F51A: MEAMImplementation::ProcessParameterFiles(KIM::ModelDriverCreate*, int, _IO_FILE* const*) (in /mmfs1/scratch/bwaters2/bwaters/job-1d8b66ad-3134-46c1-8d23-0090873d03be-007-11543798-0ecc-4aec-a2c7-fbea7f7d6130/VC_561022993723_004-and-MO_868364924829_001-1683690762/staged_job_files/repository/md/MEAM_LAMMPS__MD_249792265679_002/libkim-api-model-driver.so) ==2379386== by 0x14BD60C23: MEAMImplementation::MEAMImplementation(KIM::ModelDriverCreate*, KIM::LengthUnit, KIM::EnergyUnit, KIM::ChargeUnit, KIM::TemperatureUnit, KIM::TimeUnit, int*) (in /mmfs1/scratch/bwaters2/bwaters/job-1d8b66ad-3134-46c1-8d23-0090873d03be-007-11543798-0ecc-4aec-a2c7-fbea7f7d6130/VC_561022993723_004-and-MO_868364924829_001-1683690762/staged_job_files/repository/md/MEAM_LAMMPS__MD_249792265679_002/libkim-api-model-driver.so) ==2379386== by 0x14BD49DB7: MEAM::MEAM(KIM::ModelDriverCreate*, KIM::LengthUnit, KIM::EnergyUnit, KIM::ChargeUnit, KIM::TemperatureUnit, KIM::TimeUnit, int*) (in /mmfs1/scratch/bwaters2/bwaters/job-1d8b66ad-3134-46c1-8d23-0090873d03be-007-11543798-0ecc-4aec-a2c7-fbea7f7d6130/VC_561022993723_004-and-MO_868364924829_001-1683690762/staged_job_files/repository/md/MEAM_LAMMPS__MD_249792265679_002/libkim-api-model-driver.so) ==2379386== by 0x14BD4D59E: ModelDriverCreateRoutine (in /mmfs1/scratch/bwaters2/bwaters/job-1d8b66ad-3134-46c1-8d23-0090873d03be-007-11543798-0ecc-4aec-a2c7-fbea7f7d6130/VC_561022993723_004-and-MO_868364924829_001-1683690762/staged_job_files/repository/md/MEAM_LAMMPS__MD_249792265679_002/libkim-api-model-driver.so) ==2379386== by 0x14B5C5F1E: KIM::ModelImplementation::InitializeParameterizedModel(KIM::LengthUnit, KIM::EnergyUnit, KIM::ChargeUnit, KIM::TemperatureUnit, KIM::TimeUnit, KIM::Collections*) (in /usr/local/lib/libkim-api.so.2.2.1) ==2379386== by 0x14B5C6E18: KIM::ModelImplementation::ModelCreate(KIM::Numbering, KIM::LengthUnit, KIM::EnergyUnit, KIM::ChargeUnit, KIM::TemperatureUnit, KIM::TimeUnit, std::__cxx11::basic_string, std::allocator > const&) (in /usr/local/lib/libkim-api.so.2.2.1) ==2379386== by 0x14B5CB762: KIM::ModelImplementation::Create(KIM::Numbering, KIM::LengthUnit, KIM::EnergyUnit, KIM::ChargeUnit, KIM::TemperatureUnit, KIM::TimeUnit, std::__cxx11::basic_string, std::allocator > const&, int*, KIM::ModelImplementation**) (in /usr/local/lib/libkim-api.so.2.2.1) ==2379386== by 0x14B57B246: KIM::Model::Create(KIM::Numbering, KIM::LengthUnit, KIM::EnergyUnit, KIM::ChargeUnit, KIM::TemperatureUnit, KIM::TimeUnit, std::__cxx11::basic_string, std::allocator > const&, int*, KIM::Model**) (in /usr/local/lib/libkim-api.so.2.2.1) ==2379386== by 0x14B4DB647: void pybind11::cpp_function::initialize, std::allocator > const&)#21}, pybind11::tuple, KIM::Numbering const&, KIM::LengthUnit const&, KIM::EnergyUnit const&, KIM::ChargeUnit const&, KIM::TemperatureUnit const&, KIM::TimeUnit const&, std::__cxx11::basic_string, std::allocator > const&, pybind11::name, pybind11::scope, pybind11::sibling, char [115], pybind11::arg, char [115], char [115], char [115], char [115], char [115], char [115]>(pybind11_init_model(pybind11::module_&)::{lambda(KIM::Numbering const&, KIM::LengthUnit const&, KIM::EnergyUnit const&, KIM::ChargeUnit const&, KIM::TemperatureUnit const&, KIM::TimeUnit const&, std::__cxx11::basic_string, std::allocator > const&)#21}&&, pybind11::tuple (*)(KIM::Numbering const&, KIM::LengthUnit const&, KIM::EnergyUnit const&, KIM::ChargeUnit const&, KIM::TemperatureUnit const&, KIM::TimeUnit const&, std::__cxx11::basic_string, std::allocator > const&), pybind11::name const&, pybind11::scope const&, pybind11::sibling const&, char const (&) [115], pybind11::arg const&, char const (&) [115], char const (&) [115], char const (&) [115], char const (&) [115], char const (&) [115], char const (&) [115])::{lambda(pybind11::detail::function_call&)#3}::_FUN(pybind11::detail::function_call) (KIM_Model_bind.cpp:400) ==2379386== by 0x14B4F114B: pybind11::cpp_function::dispatcher(_object*, _object*, _object*) (pybind11.h:939) ==2379386== Address 0x14b076140 is 0 bytes inside a block of size 1,024 alloc'd ==2379386== at 0x483C583: operator new[](unsigned long) (in /usr/lib/x86_64-linux-gnu/valgrind/vgpreload_memcheck-amd64-linux.so) ==2379386== by 0x14BE86BBB: MEAMC::ProcessParameterFile(_IO_FILE*, int) (in /mmfs1/scratch/bwaters2/bwaters/job-1d8b66ad-3134-46c1-8d23-0090873d03be-007-11543798-0ecc-4aec-a2c7-fbea7f7d6130/VC_561022993723_004-and-MO_868364924829_001-1683690762/staged_job_files/repository/md/MEAM_LAMMPS__MD_249792265679_002/libkim-api-model-driver.so) ==2379386== by 0x14BD5F51A: MEAMImplementation::ProcessParameterFiles(KIM::ModelDriverCreate*, int, _IO_FILE* const*) (in /mmfs1/scratch/bwaters2/bwaters/job-1d8b66ad-3134-46c1-8d23-0090873d03be-007-11543798-0ecc-4aec-a2c7-fbea7f7d6130/VC_561022993723_004-and-MO_868364924829_001-1683690762/staged_job_files/repository/md/MEAM_LAMMPS__MD_249792265679_002/libkim-api-model-driver.so) ==2379386== by 0x14BD60C23: MEAMImplementation::MEAMImplementation(KIM::ModelDriverCreate*, KIM::LengthUnit, KIM::EnergyUnit, KIM::ChargeUnit, KIM::TemperatureUnit, KIM::TimeUnit, int*) (in /mmfs1/scratch/bwaters2/bwaters/job-1d8b66ad-3134-46c1-8d23-0090873d03be-007-11543798-0ecc-4aec-a2c7-fbea7f7d6130/VC_561022993723_004-and-MO_868364924829_001-1683690762/staged_job_files/repository/md/MEAM_LAMMPS__MD_249792265679_002/libkim-api-model-driver.so) ==2379386== by 0x14BD49DB7: MEAM::MEAM(KIM::ModelDriverCreate*, KIM::LengthUnit, KIM::EnergyUnit, KIM::ChargeUnit, KIM::TemperatureUnit, KIM::TimeUnit, int*) (in /mmfs1/scratch/bwaters2/bwaters/job-1d8b66ad-3134-46c1-8d23-0090873d03be-007-11543798-0ecc-4aec-a2c7-fbea7f7d6130/VC_561022993723_004-and-MO_868364924829_001-1683690762/staged_job_files/repository/md/MEAM_LAMMPS__MD_249792265679_002/libkim-api-model-driver.so) ==2379386== by 0x14BD4D59E: ModelDriverCreateRoutine (in /mmfs1/scratch/bwaters2/bwaters/job-1d8b66ad-3134-46c1-8d23-0090873d03be-007-11543798-0ecc-4aec-a2c7-fbea7f7d6130/VC_561022993723_004-and-MO_868364924829_001-1683690762/staged_job_files/repository/md/MEAM_LAMMPS__MD_249792265679_002/libkim-api-model-driver.so) ==2379386== by 0x14B5C5F1E: KIM::ModelImplementation::InitializeParameterizedModel(KIM::LengthUnit, KIM::EnergyUnit, KIM::ChargeUnit, KIM::TemperatureUnit, KIM::TimeUnit, KIM::Collections*) (in /usr/local/lib/libkim-api.so.2.2.1) ==2379386== by 0x14B5C6E18: KIM::ModelImplementation::ModelCreate(KIM::Numbering, KIM::LengthUnit, KIM::EnergyUnit, KIM::ChargeUnit, KIM::TemperatureUnit, KIM::TimeUnit, std::__cxx11::basic_string, std::allocator > const&) (in /usr/local/lib/libkim-api.so.2.2.1) ==2379386== by 0x14B5CB762: KIM::ModelImplementation::Create(KIM::Numbering, KIM::LengthUnit, KIM::EnergyUnit, KIM::ChargeUnit, KIM::TemperatureUnit, KIM::TimeUnit, std::__cxx11::basic_string, std::allocator > const&, int*, KIM::ModelImplementation**) (in /usr/local/lib/libkim-api.so.2.2.1) ==2379386== by 0x14B57B246: KIM::Model::Create(KIM::Numbering, KIM::LengthUnit, KIM::EnergyUnit, KIM::ChargeUnit, KIM::TemperatureUnit, KIM::TimeUnit, std::__cxx11::basic_string, std::allocator > const&, int*, KIM::Model**) (in /usr/local/lib/libkim-api.so.2.2.1) ==2379386== by 0x14B4DB647: void pybind11::cpp_function::initialize, std::allocator > const&)#21}, pybind11::tuple, KIM::Numbering const&, KIM::LengthUnit const&, KIM::EnergyUnit const&, KIM::ChargeUnit const&, KIM::TemperatureUnit const&, KIM::TimeUnit const&, std::__cxx11::basic_string, std::allocator > const&, pybind11::name, pybind11::scope, pybind11::sibling, char [115], pybind11::arg, char [115], char [115], char [115], char [115], char [115], char [115]>(pybind11_init_model(pybind11::module_&)::{lambda(KIM::Numbering const&, KIM::LengthUnit const&, KIM::EnergyUnit const&, KIM::ChargeUnit const&, KIM::TemperatureUnit const&, KIM::TimeUnit const&, std::__cxx11::basic_string, std::allocator > const&)#21}&&, pybind11::tuple (*)(KIM::Numbering const&, KIM::LengthUnit const&, KIM::EnergyUnit const&, KIM::ChargeUnit const&, KIM::TemperatureUnit const&, KIM::TimeUnit const&, std::__cxx11::basic_string, std::allocator > const&), pybind11::name const&, pybind11::scope const&, pybind11::sibling const&, char const (&) [115], pybind11::arg const&, char const (&) [115], char const (&) [115], char const (&) [115], char const (&) [115], char const (&) [115], char const (&) [115])::{lambda(pybind11::detail::function_call&)#3}::_FUN(pybind11::detail::function_call) (KIM_Model_bind.cpp:400) ==2379386== by 0x14B4F114B: pybind11::cpp_function::dispatcher(_object*, _object*, _object*) (pybind11.h:939) ==2379386== ==2379386== Conditional jump or move depends on uninitialised value(s) ==2379386== at 0x699E467: NpyIter_GetInnerFixedStrideArray (in /usr/local/lib/python3.8/dist-packages/numpy/core/_multiarray_umath.cpython-38-x86_64-linux-gnu.so) ==2379386== by 0x6A9AACC: execute_ufunc_loop (in /usr/local/lib/python3.8/dist-packages/numpy/core/_multiarray_umath.cpython-38-x86_64-linux-gnu.so) ==2379386== by 0x6AA3C47: ufunc_generic_fastcall (in /usr/local/lib/python3.8/dist-packages/numpy/core/_multiarray_umath.cpython-38-x86_64-linux-gnu.so) ==2379386== by 0x5F3C40: ??? (in /usr/bin/python3.8) ==2379386== by 0x5F3F04: PyObject_CallFunctionObjArgs (in /usr/bin/python3.8) ==2379386== by 0x69B0AA5: array_add (in /usr/local/lib/python3.8/dist-packages/numpy/core/_multiarray_umath.cpython-38-x86_64-linux-gnu.so) ==2379386== by 0x50F85E: PyNumber_Add (in /usr/bin/python3.8) ==2379386== by 0x56C1D8: _PyEval_EvalFrameDefault (in /usr/bin/python3.8) ==2379386== by 0x5F6835: _PyFunction_Vectorcall (in /usr/bin/python3.8) ==2379386== by 0x56BBDE: _PyEval_EvalFrameDefault (in /usr/bin/python3.8) ==2379386== by 0x569CE9: _PyEval_EvalCodeWithName (in /usr/bin/python3.8) ==2379386== by 0x5F6A12: _PyFunction_Vectorcall (in /usr/bin/python3.8) ==2379386== ==2379386== ==2379386== HEAP SUMMARY: ==2379386== in use at exit: 2,273,255 bytes in 1,703 blocks ==2379386== total heap usage: 60,742 allocs, 59,039 frees, 87,622,249 bytes allocated ==2379386== ==2379386== LEAK SUMMARY: ==2379386== definitely lost: 0 bytes in 0 blocks ==2379386== indirectly lost: 0 bytes in 0 blocks ==2379386== possibly lost: 188,754 bytes in 107 blocks ==2379386== still reachable: 2,084,469 bytes in 1,595 blocks ==2379386== of which reachable via heuristic: ==2379386== stdstring : 38 bytes in 1 blocks ==2379386== suppressed: 32 bytes in 1 blocks ==2379386== Rerun with --leak-check=full to see details of leaked memory ==2379386== ==2379386== Use --track-origins=yes to see where uninitialised values come from ==2379386== For lists of detected and suppressed errors, rerun with: -s ==2379386== ERROR SUMMARY: 15 errors from 3 contexts (suppressed: 17893 from 610) ================================================================================ To pass this verification check the number of bytes that are "definitely lost" or "indirectly lost" must be zero. NOTE that Valgrind will typically report non-zero "possibly lost" bytes due to Python's internal memory allocation and garbage collection that it does not monitor. Full Valgrind output written to auxiliary file "valgrind.out" Grade: P Comment: No memory leak detected. === Verification check vc-memory-leak end (2023-05-10 00:09:52) ===