Title
A single sentence description.
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LAMMPS ADP potential for the Mg-H system developed by Smirnova, Starikov and Vlasova (2018) v000 |
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Description | This is an interatomic potential intended for the study of Mg-H system using atomistic methods. The reported potential has an angular-dependent form and can be used for simulation of pure magnesium, as well as for consideration of binary cases including Mg and H. The primary purpose of the potential is the simulation of hydrogen behavior in magnesium. |
Species
The supported atomic species.
| H, Mg |
Disclaimer
A statement of applicability provided by the contributor, informing users of the intended use of this KIM Item.
|
None |
Content Origin | https://www.ctcms.nist.gov/potentials/entry/2018--Smirnova-D-E-Starikov-S-V-Vlasova-A-M--Mg-H/ |
Contributor |
I Nikiforov |
Maintainer |
I Nikiforov |
Developer |
Daria Smirnova Sergey Starikov A. M. Vlasova |
Published on KIM | 2022 |
How to Cite |
This Simulator Model originally published in [1] is archived in OpenKIM [2-4]. [1] Smirnova DE, Starikov SV, Vlasova AM. New interatomic potential for simulation of pure magnesium and magnesium hydrides. Computational Materials Science [Internet]. 2018;154:295–302. Available from: https://www.sciencedirect.com/science/article/pii/S0927025618304865 doi:10.1016/j.commatsci.2018.07.051 — (Primary Source) A primary source is a reference directly related to the item documenting its development, as opposed to other sources that are provided as background information. [2] Smirnova D, Starikov S, Vlasova AM. LAMMPS ADP potential for the Mg-H system developed by Smirnova, Starikov and Vlasova (2018) v000. OpenKIM; 2022. doi:10.25950/3ae88c4b [3] Tadmor EB, Elliott RS, Sethna JP, Miller RE, Becker CA. The potential of atomistic simulations and the Knowledgebase of Interatomic Models. JOM. 2011;63(7):17. doi:10.1007/s11837-011-0102-6 [4] Elliott RS, Tadmor EB. Knowledgebase of Interatomic Models (KIM) Application Programming Interface (API). OpenKIM; 2011. doi:10.25950/ff8f563a Click here to download the above citation in BibTeX format. |
Citations
This panel presents information regarding the papers that have cited the interatomic potential (IP) whose page you are on. The OpenKIM machine learning based Deep Citation framework is used to determine whether the citing article actually used the IP in computations (denoted by "USED") or only provides it as a background citation (denoted by "NOT USED"). For more details on Deep Citation and how to work with this panel, click the documentation link at the top of the panel. The word cloud to the right is generated from the abstracts of IP principle source(s) (given below in "How to Cite") and the citing articles that were determined to have used the IP in order to provide users with a quick sense of the types of physical phenomena to which this IP is applied. The bar chart shows the number of articles that cited the IP per year. Each bar is divided into green (articles that USED the IP) and blue (articles that did NOT USE the IP). Users are encouraged to correct Deep Citation errors in determination by clicking the speech icon next to a citing article and providing updated information. This will be integrated into the next Deep Citation learning cycle, which occurs on a regular basis. OpenKIM acknowledges the support of the Allen Institute for AI through the Semantic Scholar project for providing citation information and full text of articles when available, which are used to train the Deep Citation ML algorithm. |
This panel provides information on past usage of this interatomic potential (IP) powered by the OpenKIM Deep Citation framework. The word cloud indicates typical applications of the potential. The bar chart shows citations per year of this IP (bars are divided into articles that used the IP (green) and those that did not (blue)). The complete list of articles that cited this IP is provided below along with the Deep Citation determination on usage. See the Deep Citation documentation for more information. ![]() 14 Citations (13 used)
Help us to determine which of the papers that cite this potential actually used it to perform calculations. If you know, click the .
USED (high confidence) A. Vlasova, “Simulation of Uniaxial Deformation of Magnesium Nanocrystals of ‘Rigid’ and ‘Soft’ Orientations,” Physics of the Solid State. 2020. link Times cited: 1 USED (low confidence) D. Liang et al., “Preparation of high purity magnesium by vacuum gasification-directional condensation technology,” Separation and Purification Technology. 2023. link Times cited: 0 USED (low confidence) E. Ibrahim, Y. Lysogorskiy, M. Mrovec, and R. Drautz, “Atomic cluster expansion for a general-purpose interatomic potential of magnesium,” Physical Review Materials. 2023. link Times cited: 2 Abstract: We present a general-purpose parameterization of the atomic … read more USED (low confidence) S. Zhang et al., “Investigating the Impact of Displacement Cascades on Tritium Diffusion in MgT2: A Molecular Dynamics Study,” Materials. 2023. link Times cited: 0 Abstract: Molecular dynamics methods were utilized to investigate disp… read more USED (low confidence) T. Pittie, G. Kunwar, S. Das, J. Jain, and K. N. M. Anoop, “Determining the threshold displacement energy of magnesium using molecular dynamics simulations,” Bulletin of Materials Science. 2022. link Times cited: 1 USED (low confidence) Z. Jian et al., “Shock-induced plasticity and phase transformation in single crystal magnesium: an interatomic potential and non-equilibrium molecular dynamics simulations,” Journal of Physics: Condensed Matter. 2021. link Times cited: 8 Abstract: An effective and reliable Finnis–Sinclair (FS) type potentia… read more USED (low confidence) A. Mayer, “Micromechanical model of nanoparticle compaction and shock waves in metal powders,” International Journal of Plasticity. 2021. link Times cited: 11 USED (low confidence) S. Starikov et al., “Angular-dependent interatomic potential for large-scale atomistic simulation of iron: Development and comprehensive comparison with existing interatomic models,” Physical Review Materials. 2021. link Times cited: 16 Abstract: The development of classical interatomic potential for iron … read more USED (low confidence) N. Wang and S. Huang, “Molecular dynamics study on magnesium hydride nanoclusters with machine-learning interatomic potential,” Physical Review B. 2020. link Times cited: 3 Abstract: We introduce a machine-learning (ML) interatomic potential f… read more USED (low confidence) T. Tang et al., “A polycrystal plasticity based thermo-mechanical-dynamic recrystallization coupled modeling method and its application to light weight alloys,” International Journal of Plasticity. 2019. link Times cited: 34 USED (low confidence) Y. Chang et al., “Ti and its alloys as examples of cryogenic focused ion beam milling of environmentally-sensitive materials,” Nature Communications. 2019. link Times cited: 88 USED (low confidence) A. Vlasova, “Deformation features of magnesium [11̅01]- and [0001]-nanocrystal with hydrogen and vacancies.” 2018. link Times cited: 0 USED (low confidence) J. F. Troncoso and V. Turlo, “Evaluating the applicability of classical and neural network interatomic potentials for modeling body centered cubic polymorph of magnesium,” Modelling and Simulation in Materials Science and Engineering. 2022. link Times cited: 2 Abstract: Magnesium (Mg) is one of the most abundant metallic elements… read more NOT USED (high confidence) M. Poul, L. Huber, E. Bitzek, and J. Neugebauer, “Systematic atomic structure datasets for machine learning potentials: Application to defects in magnesium,” Physical Review B. 2022. link Times cited: 3 Abstract: We present a physically motivated strategy for the construct… read more |
Funding |
Award Number: 16-33-60027 Funder: Russian Foundation for Basic Research Award Number: 859480 Funder: K2 |
Short KIM ID
The unique KIM identifier code.
| SM_899925688973_000 |
Extended KIM ID
The long form of the KIM ID including a human readable prefix (100 characters max), two underscores, and the Short KIM ID. Extended KIM IDs can only contain alpha-numeric characters (letters and digits) and underscores and must begin with a letter.
| Sim_LAMMPS_ADP_SmirnovaStarikovVlasova_2018_MgH__SM_899925688973_000 |
DOI |
10.25950/3ae88c4b https://doi.org/10.25950/3ae88c4b https://commons.datacite.org/doi.org/10.25950/3ae88c4b |
KIM Item Type | Simulator Model |
KIM API Version | 2.2 |
Simulator Name
The name of the simulator as defined in kimspec.edn.
| LAMMPS |
Potential Type | adp |
Simulator Potential | adp |
Run Compatibility | portable-models |
Grade | Name | Category | Brief Description | Full Results | Aux File(s) |
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P | vc-species-supported-as-stated | mandatory | The model supports all species it claims to support; see full description. |
Results | Files |
P | vc-periodicity-support | mandatory | Periodic boundary conditions are handled correctly; see full description. |
Results | Files |
N/A | vc-permutation-symmetry | mandatory | Total energy and forces are unchanged when swapping atoms of the same species; see full description. |
Results | Files |
B | vc-forces-numerical-derivative | consistency | Forces computed by the model agree with numerical derivatives of the energy; see full description. |
Results | Files |
F | vc-dimer-continuity-c1 | informational | The energy versus separation relation of a pair of atoms is C1 continuous (i.e. the function and its first derivative are continuous); see full description. |
Results | Files |
P | vc-objectivity | informational | Total energy is unchanged and forces transform correctly under rigid-body translation and rotation; see full description. |
Results | Files |
P | vc-inversion-symmetry | informational | Total energy is unchanged and forces change sign when inverting a configuration through the origin; see full description. |
Results | Files |
F | vc-memory-leak | informational | The model code does not have memory leaks (i.e. it releases all allocated memory at the end); see full description. |
Results | Files |
N/A | vc-thread-safe | mandatory | The model returns the same energy and forces when computed in serial and when using parallel threads for a set of configurations. Note that this is not a guarantee of thread safety; see full description. |
Results | Files |
This bar chart plot shows the mono-atomic body-centered cubic (bcc) lattice constant predicted by the current model (shown in the unique color) compared with the predictions for all other models in the OpenKIM Repository that support the species. The vertical bars show the average and standard deviation (one sigma) bounds for all model predictions. Graphs are generated for each species supported by the model.
This graph shows the cohesive energy versus volume-per-atom for the current mode for four mono-atomic cubic phases (body-centered cubic (bcc), face-centered cubic (fcc), simple cubic (sc), and diamond). The curve with the lowest minimum is the ground state of the crystal if stable. (The crystal structure is enforced in these calculations, so the phase may not be stable.) Graphs are generated for each species supported by the model.
This bar chart plot shows the mono-atomic face-centered diamond lattice constant predicted by the current model (shown in the unique color) compared with the predictions for all other models in the OpenKIM Repository that support the species. The vertical bars show the average and standard deviation (one sigma) bounds for all model predictions. Graphs are generated for each species supported by the model.
This graph shows the dislocation core energy of a cubic crystal at zero temperature and pressure for a specific set of dislocation core cutoff radii. After obtaining the total energy of the system from conjugate gradient minimizations, non-singular, isotropic and anisotropic elasticity are applied to obtain the dislocation core energy for each of these supercells with different dipole distances. Graphs are generated for each species supported by the model.
(No matching species)This bar chart plot shows the mono-atomic face-centered cubic (fcc) elastic constants predicted by the current model (shown in blue) compared with the predictions for all other models in the OpenKIM Repository that support the species. The vertical bars show the average and standard deviation (one sigma) bounds for all model predictions. Graphs are generated for each species supported by the model.
This bar chart plot shows the mono-atomic face-centered cubic (fcc) lattice constant predicted by the current model (shown in red) compared with the predictions for all other models in the OpenKIM Repository that support the species. The vertical bars show the average and standard deviation (one sigma) bounds for all model predictions. Graphs are generated for each species supported by the model.
This bar chart plot shows the intrinsic and extrinsic stacking fault energies as well as the unstable stacking and unstable twinning energies for face-centered cubic (fcc) predicted by the current model (shown in blue) compared with the predictions for all other models in the OpenKIM Repository that support the species. The vertical bars show the average and standard deviation (one sigma) bounds for all model predictions. Graphs are generated for each species supported by the model.
(No matching species)This bar chart plot shows the mono-atomic face-centered cubic (fcc) relaxed surface energies predicted by the current model (shown in blue) compared with the predictions for all other models in the OpenKIM Repository that support the species. The vertical bars show the average and standard deviation (one sigma) bounds for all model predictions. Graphs are generated for each species supported by the model.
(No matching species)This bar chart plot shows the mono-atomic simple cubic (sc) lattice constant predicted by the current model (shown in the unique color) compared with the predictions for all other models in the OpenKIM Repository that support the species. The vertical bars show the average and standard deviation (one sigma) bounds for all model predictions. Graphs are generated for each species supported by the model.
Test | Test Results | Link to Test Results page | Benchmark time
Usertime multiplied by the Whetstone Benchmark. This number can be used (approximately) to compare the performance of different models independently of the architecture on which the test was run.
Measured in Millions of Whetstone Instructions (MWI) |
---|---|---|---|
Cohesive energy versus lattice constant curve for bcc Mg v004 | view | 3481 | |
Cohesive energy versus lattice constant curve for diamond Mg v004 | view | 3382 | |
Cohesive energy versus lattice constant curve for fcc Mg v004 | view | 4123 | |
Cohesive energy versus lattice constant curve for sc Mg v004 | view | 3976 |
Test | Test Results | Link to Test Results page | Benchmark time
Usertime multiplied by the Whetstone Benchmark. This number can be used (approximately) to compare the performance of different models independently of the architecture on which the test was run.
Measured in Millions of Whetstone Instructions (MWI) |
---|---|---|---|
Elastic constants for HMg in AFLOW crystal prototype A2B_cF12_225_c_a at zero temperature and pressure v000 | view | 190908 | |
Elastic constants for HMg in AFLOW crystal prototype A2B_cP12_205_c_a at zero temperature and pressure v000 | view | 2838659 |
Test | Test Results | Link to Test Results page | Benchmark time
Usertime multiplied by the Whetstone Benchmark. This number can be used (approximately) to compare the performance of different models independently of the architecture on which the test was run.
Measured in Millions of Whetstone Instructions (MWI) |
---|---|---|---|
Elastic constants for bcc H at zero temperature v006 | view | 24596 | |
Elastic constants for bcc Mg at zero temperature v006 | view | 22647 | |
Elastic constants for diamond H at zero temperature v001 | view | 62302 | |
Elastic constants for diamond Mg at zero temperature v001 | view | 62083 | |
Elastic constants for fcc H at zero temperature v006 | view | 13455 | |
Elastic constants for fcc Mg at zero temperature v006 | view | 13381 | |
Elastic constants for sc H at zero temperature v006 | view | 16511 | |
Elastic constants for sc Mg at zero temperature v006 | view | 43554 |
Test | Test Results | Link to Test Results page | Benchmark time
Usertime multiplied by the Whetstone Benchmark. This number can be used (approximately) to compare the performance of different models independently of the architecture on which the test was run.
Measured in Millions of Whetstone Instructions (MWI) |
---|---|---|---|
Equilibrium zero-temperature lattice constant for bcc H v007 | view | 30563 | |
Equilibrium zero-temperature lattice constant for bcc Mg v007 | view | 24674 | |
Equilibrium zero-temperature lattice constant for diamond H v007 | view | 27739 | |
Equilibrium zero-temperature lattice constant for diamond Mg v007 | view | 28289 | |
Equilibrium zero-temperature lattice constant for fcc H v007 | view | 27283 | |
Equilibrium zero-temperature lattice constant for fcc Mg v007 | view | 35408 | |
Equilibrium zero-temperature lattice constant for sc H v007 | view | 28103 | |
Equilibrium zero-temperature lattice constant for sc Mg v007 | view | 22816 |
Test | Test Results | Link to Test Results page | Benchmark time
Usertime multiplied by the Whetstone Benchmark. This number can be used (approximately) to compare the performance of different models independently of the architecture on which the test was run.
Measured in Millions of Whetstone Instructions (MWI) |
---|---|---|---|
Equilibrium lattice constants for hcp Mg v005 | view | 660199 |
Test | Test Results | Link to Test Results page | Benchmark time
Usertime multiplied by the Whetstone Benchmark. This number can be used (approximately) to compare the performance of different models independently of the architecture on which the test was run.
Measured in Millions of Whetstone Instructions (MWI) |
---|---|---|---|
Monovacancy formation energy and relaxation volume for hcp Mg | view | 5174638 |
Test | Test Results | Link to Test Results page | Benchmark time
Usertime multiplied by the Whetstone Benchmark. This number can be used (approximately) to compare the performance of different models independently of the architecture on which the test was run.
Measured in Millions of Whetstone Instructions (MWI) |
---|---|---|---|
Vacancy formation and migration energy for hcp Mg | view | 3170467 |
Test | Error Categories | Link to Error page |
---|---|---|
Elastic constants for hcp Mg at zero temperature v004 | other | view |
Test | Error Categories | Link to Error page |
---|---|---|
Equilibrium lattice constants for hcp H v005 | other | view |
Verification Check | Error Categories | Link to Error page |
---|---|---|
MemoryLeak__VC_561022993723_004 | other | view |
Sim_LAMMPS_ADP_SmirnovaStarikovVlasova_2018_MgH__SM_899925688973_000.txz | Tar+XZ | Linux and OS X archive |
Sim_LAMMPS_ADP_SmirnovaStarikovVlasova_2018_MgH__SM_899925688973_000.zip | Zip | Windows archive |