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Sim_LAMMPS_IFF_PCFF_HeinzMishraLinEmami_2015Ver1v5_FccmetalsMineralsSolventsPolymers__SM_039297821658_001

Interatomic potential for Aluminum (Al), Calcium (Ca), Carbon (C), Copper (Cu), Gold (Au), Hydrogen (H), Lead (Pb), Nickel (Ni), Oxygen (O), Palladium (Pd), Phosphorus (P), Platinum (Pt), Potassium (K), Silicon (Si), Silver (Ag), Sodium (Na), Sulfur (S).
Use this Potential

Title
A single sentence description.
LAMMPS PCFF bonded force-field combined with IFF non-bonded 9-6 Lennard-Jones potentials for metal interactions v001
Description This "supermodel" allows the use of PCFF bonded force-fields for covalent bonds, and the IFF non-bonded 9-6 Lennard-Jones potentials for interactions with between ceramic inorganics and several face-centered cubic metals (Ag, Al, Au, Cu, Ni, Pb, Pd, Pt). the model reproduces densities, surface tensions, interface properties with water and (bio)organic molecules, as well as mechanical properties in quantitative (<0.1%) to good qualitative (25%) agreement with experiment under ambient conditions. Deviations associated with earlier LJ models have been reduced by 1 order of magnitude due to the precise fit of the new models to densities and surface tensions under standard conditions, which also leads to significantly improved results for surface energy anisotropies, interface tensions, and mechanical properties. The performance is comparable to tight-binding and embedded atom models at up to a million times lower computational cost. The models extend classical simulation methods to metals and a variety of nanostructured materials through the PCFF. Limitations include the neglect of electronic structure effects and the restriction to noncovalent interactions with the metals.
Species
The supported atomic species.
Ag, Al, Au, C, Ca, Cu, H, K, Na, Ni, O, P, Pb, Pd, Pt, S, Si
Disclaimer
A statement of applicability provided by the contributor, informing users of the intended use of this KIM Item.
None
Contributor I Nikiforov
Maintainer I Nikiforov
Developer Hendrik Heinz
Fateme S. Emami
Tzu-Jen Lin
Ratan K. Mishra
Published on KIM 2023
How to Cite

This Simulator Model originally published in [1-4] is archived in OpenKIM [5-7].

[1] Hill J-R, Sauer J. Molecular Mechanics Potential for Silica and Zeolite Catalysts Based on ab Initio Calculations. 2. Aluminosilicates. The Journal of Physical Chemistry [Internet]. 1995Jun;99(23):9536–50. Available from: https://doi.org/10.1021/j100023a036 doi:10.1021/j100023a036

[2] Heinz H, Vaia RA, Farmer BL, Naik RR. Accurate Simulation of Surfaces and Interfaces of Face-Centered Cubic Metals Using 12-6 and 9-6 Lennard-Jones Potentials. The Journal of Physical Chemistry C [Internet]. 2008Oct;112(44):17281–90. Available from: https://doi.org/10.1021/jp801931d doi:10.1021/jp801931d

[3] Liu J, Tennessen E, Miao J, Huang Y, Rondinelli JM, Heinz H. Understanding Chemical Bonding in Alloys and the Representation in Atomistic Simulations. The Journal of Physical Chemistry C [Internet]. 2018May;122(26):14996–5009. Available from: https://doi.org/10.1021/acs.jpcc.8b01891 doi:10.1021/acs.jpcc.8b01891

[4] Heinz H, Lin T-J, Kishore Mishra R, Emami FS. Thermodynamically Consistent Force Fields for the Assembly of Inorganic, Organic, and Biological Nanostructures: The INTERFACE Force Field. Langmuir [Internet]. 2013;29(6):1754–65. Available from: https://doi.org/10.1021/la3038846 doi:10.1021/la3038846 — (Primary Source) A primary source is a reference directly related to the item documenting its development, as opposed to other sources that are provided as background information.

[5] Heinz H, Emami FS, Lin T-J, Mishra RK. LAMMPS PCFF bonded force-field combined with IFF non-bonded 9-6 Lennard-Jones potentials for metal interactions v001. OpenKIM; 2023. doi:10.25950/2ea4fcb9

[6] Tadmor EB, Elliott RS, Sethna JP, Miller RE, Becker CA. The potential of atomistic simulations and the Knowledgebase of Interatomic Models. JOM. 2011;63(7):17. doi:10.1007/s11837-011-0102-6

[7] Elliott RS, Tadmor EB. Knowledgebase of Interatomic Models (KIM) Application Programming Interface (API). OpenKIM; 2011. doi:10.25950/ff8f563a

Click here to download the above citation in BibTeX format.
Funding Not available
Short KIM ID
The unique KIM identifier code.
SM_039297821658_001
Extended KIM ID
The long form of the KIM ID including a human readable prefix (100 characters max), two underscores, and the Short KIM ID. Extended KIM IDs can only contain alpha-numeric characters (letters and digits) and underscores and must begin with a letter.
Sim_LAMMPS_IFF_PCFF_HeinzMishraLinEmami_2015Ver1v5_FccmetalsMineralsSolventsPolymers__SM_039297821658_001
DOI 10.25950/2ea4fcb9
https://doi.org/10.25950/2ea4fcb9
https://commons.datacite.org/doi.org/10.25950/2ea4fcb9
KIM Item TypeSimulator Model
KIM API Version2.3
Simulator Name
The name of the simulator as defined in kimspec.edn.
LAMMPS
Potential Type class2
Simulator Potential class2
Run Compatibility special-purpose-models
Atom Type Labels
The supported particle types, if different from their atomic species.
{"ay1" "Al", "Ni" "Ni", "sc3" "Si", "oy4" "O", "he1" "H", "Cu" "Cu", "sc4" "Si", "oc7" "O", "o*" "O", "hoc" "H", "k+" "K", "oc6" "O", "oc21" "O", "oap1" "O", "oy3" "O", "oy6" "O", "s'" "S", "oe1" "O", "ac2" "Al", "Ag" "Ag", "Pt" "Pt", "ce1" "C", "oc17" "O", "ca+g" "Ca", "Pb" "Pb", "ac3" "Al", "oy7" "O", "na+" "Na", "sc2" "Si", "sc1" "Si", "sy1" "Si", "oc9" "O", "hop" "H", "oy1" "O", "Al" "Al", "ca+e" "Ca", "oc15" "O", "oc14" "O", "oc19" "O", "ca+t" "Ca", "oap2" "O", "oc22" "O", "Au" "Au", "oc16" "O", "s_m" "S", "hok" "H", "pap" "P", "oc24" "O", "sy2" "Si", "ac1" "Al", "oc12" "O", "oc13" "O", "oc23" "O", "oc2" "O", "h*" "H", "oc1" "O", "oy8" "O", "oc11" "O", "oc10" "O", "ca+a" "Ca", "oc5" "O", "oc4" "O", "ca++" "Ca", "oy2" "O", "oy9" "O", "ay2" "Al", "ca+h" "Ca", "oc20" "O", "Pd" "Pd", "oc3" "O", "hoy" "H", "oy5" "O", "oc18" "O", "oc8" "O", "ca+m" "Ca"}
Previous Version Sim_LAMMPS_IFF_PCFF_HeinzMishraLinEmami_2015Ver1v5_FccmetalsMineralsSolventsPolymers__SM_039297821658_000


BCC Lattice Constant

This bar chart plot shows the mono-atomic body-centered cubic (bcc) lattice constant predicted by the current model (shown in the unique color) compared with the predictions for all other models in the OpenKIM Repository that support the species. The vertical bars show the average and standard deviation (one sigma) bounds for all model predictions. Graphs are generated for each species supported by the model.

(No matching species)

Cohesive Energy Graph

This graph shows the cohesive energy versus volume-per-atom for the current mode for four mono-atomic cubic phases (body-centered cubic (bcc), face-centered cubic (fcc), simple cubic (sc), and diamond). The curve with the lowest minimum is the ground state of the crystal if stable. (The crystal structure is enforced in these calculations, so the phase may not be stable.) Graphs are generated for each species supported by the model.

(No matching species)

Diamond Lattice Constant

This bar chart plot shows the mono-atomic face-centered diamond lattice constant predicted by the current model (shown in the unique color) compared with the predictions for all other models in the OpenKIM Repository that support the species. The vertical bars show the average and standard deviation (one sigma) bounds for all model predictions. Graphs are generated for each species supported by the model.

(No matching species)

Dislocation Core Energies

This graph shows the dislocation core energy of a cubic crystal at zero temperature and pressure for a specific set of dislocation core cutoff radii. After obtaining the total energy of the system from conjugate gradient minimizations, non-singular, isotropic and anisotropic elasticity are applied to obtain the dislocation core energy for each of these supercells with different dipole distances. Graphs are generated for each species supported by the model.

(No matching species)

FCC Elastic Constants

This bar chart plot shows the mono-atomic face-centered cubic (fcc) elastic constants predicted by the current model (shown in blue) compared with the predictions for all other models in the OpenKIM Repository that support the species. The vertical bars show the average and standard deviation (one sigma) bounds for all model predictions. Graphs are generated for each species supported by the model.

(No matching species)

FCC Lattice Constant

This bar chart plot shows the mono-atomic face-centered cubic (fcc) lattice constant predicted by the current model (shown in red) compared with the predictions for all other models in the OpenKIM Repository that support the species. The vertical bars show the average and standard deviation (one sigma) bounds for all model predictions. Graphs are generated for each species supported by the model.

(No matching species)

FCC Stacking Fault Energies

This bar chart plot shows the intrinsic and extrinsic stacking fault energies as well as the unstable stacking and unstable twinning energies for face-centered cubic (fcc) predicted by the current model (shown in blue) compared with the predictions for all other models in the OpenKIM Repository that support the species. The vertical bars show the average and standard deviation (one sigma) bounds for all model predictions. Graphs are generated for each species supported by the model.

(No matching species)

FCC Surface Energies

This bar chart plot shows the mono-atomic face-centered cubic (fcc) relaxed surface energies predicted by the current model (shown in blue) compared with the predictions for all other models in the OpenKIM Repository that support the species. The vertical bars show the average and standard deviation (one sigma) bounds for all model predictions. Graphs are generated for each species supported by the model.

(No matching species)

SC Lattice Constant

This bar chart plot shows the mono-atomic simple cubic (sc) lattice constant predicted by the current model (shown in the unique color) compared with the predictions for all other models in the OpenKIM Repository that support the species. The vertical bars show the average and standard deviation (one sigma) bounds for all model predictions. Graphs are generated for each species supported by the model.

(No matching species)

Cubic Crystal Basic Properties Table

Species: Ag

Species: Al

Species: Au

Species: C

Species: Ca

Species: Cu

Species: H

Species: K

Species: Na

Species: Ni

Species: O

Species: P

Species: Pb

Species: Pd

Species: Pt

Species: S

Species: Si





Equilibrium structure and energy for a crystal specified using LAMMPS type labels at zero temperature and pressure v000

Creators:
Contributor: ilia
Publication Year: 2023
DOI: https://doi.org/10.25950/86dce899

Computes the equilibrium crystal structure and energy for an arbitrary crystal at zero temperature and applied stress by performing an unconstrained structural relaxation of the unit cell and atomic positions. One or more initial guesses are specified as LAMMPS data files using type labels. Each unique crystal structure found after the relaxations is reported using the AFLOW prototype designation. No guarantee is made regarding the stability of computed equilibria, nor that any are the ground state.
Test Test Results Link to Test Results page Benchmark time
Usertime multiplied by the Whetstone Benchmark. This number can be used (approximately) to compare the performance of different models independently of the architecture on which the test was run.

Measured in Millions of Whetstone Instructions (MWI)
Unconstrained equilibrium crystal structure and energy of Alpha Cristobalite expressed in PCFF-INTERFACE atom types and bonding v000 view 264003
Unconstrained equilibrium crystal structure and energy of Alpha Quartz expressed in PCFF-INTERFACE atom types and bonding v000 view 102927
Unconstrained equilibrium crystal structure and energy of Aluminum expressed in PCFF-INTERFACE atom types and bonding v000 view 47271
Unconstrained equilibrium crystal structure and energy of Kaolinite expressed in PCFF-INTERFACE atom types and bonding v000 view 2078843
Unconstrained equilibrium crystal structure and energy of Lead expressed in PCFF-INTERFACE atom types and bonding v000 view 46970
Unconstrained equilibrium crystal structure and energy of Montmorillonite expressed in PCFF-INTERFACE atom types and bonding v000 view 3758842
Unconstrained equilibrium crystal structure and energy of Nickel expressed in PCFF-INTERFACE atom types and bonding v000 view 47632
Unconstrained equilibrium crystal structure and energy of Palladium expressed in PCFF-INTERFACE atom types and bonding v000 view 48810
Unconstrained equilibrium crystal structure and energy of Platinum expressed in PCFF-INTERFACE atom types and bonding v000 view 47485
Unconstrained equilibrium crystal structure and energy of Pyrophyllite expressed in PCFF-INTERFACE atom types and bonding v000 view 2453256
Unconstrained equilibrium crystal structure and energy of Tobermorite expressed in PCFF-INTERFACE atom types and bonding v000 view 233819
Unconstrained equilibrium crystal structure and energy of Tricalcium Aluminate expressed in PCFF-INTERFACE atom types and bonding v000 view 954661
Unconstrained equilibrium crystal structure and energy of Tricalcium Silicate expressed in PCFF-INTERFACE atom types and bonding v000 view 668238


EquilibriumCrystalStructure_Unconstrained_TypeLabels__TD_495406822220_000
Test Error Categories Link to Error page
Unconstrained equilibrium crystal structure and energy of Alpha Cristobalite expressed in PCFF-INTERFACE atom types and bonding v000 other view
Unconstrained equilibrium crystal structure and energy of Alpha Quartz expressed in PCFF-INTERFACE atom types and bonding v000 other view
Unconstrained equilibrium crystal structure and energy of Aluminum expressed in PCFF-INTERFACE atom types and bonding v000 other view
Unconstrained equilibrium crystal structure and energy of Kaolinite expressed in PCFF-INTERFACE atom types and bonding v000 other view
Unconstrained equilibrium crystal structure and energy of Lead expressed in PCFF-INTERFACE atom types and bonding v000 other view
Unconstrained equilibrium crystal structure and energy of Montmorillonite expressed in PCFF-INTERFACE atom types and bonding v000 other view
Unconstrained equilibrium crystal structure and energy of Nickel expressed in PCFF-INTERFACE atom types and bonding v000 other view
Unconstrained equilibrium crystal structure and energy of Palladium expressed in PCFF-INTERFACE atom types and bonding v000 other view
Unconstrained equilibrium crystal structure and energy of Platinum expressed in PCFF-INTERFACE atom types and bonding v000 other view
Unconstrained equilibrium crystal structure and energy of Pyrophyllite expressed in PCFF-INTERFACE atom types and bonding v000 other view
Unconstrained equilibrium crystal structure and energy of Tobermorite expressed in PCFF-INTERFACE atom types and bonding v000 other view
Unconstrained equilibrium crystal structure and energy of Tricalcium Aluminate expressed in PCFF-INTERFACE atom types and bonding v000 other view
Unconstrained equilibrium crystal structure and energy of Tricalcium Silicate expressed in PCFF-INTERFACE atom types and bonding v000 other view



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