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Tersoff_LAMMPS_Albe_Nordlund_Averback_PtC__MO_500121566391_001

Title
A single sentence description.
Tersoff-style three-body potential for PtC by Albe/Nordlund/Averback
Description
A short description of the Model describing its key features including for example: type of model (pair potential, 3-body potential, EAM, etc.), modeled species (Ac, Ag, ..., Zr), intended purpose, origin, and so on.
Tersoff-style three-body potential for PtC by Albe/Nordlund/Averback. The C-C interaction is potential II from Brenner, Phys. Rev. B 42, 9458 (1990) without the overbinding correction.
Species
The supported atomic species.
C, Pt
Contributor TobiasBrink
Maintainer TobiasBrink
Author Tobias Brink
Publication Year 2018
Source Citations
A citation to primary published work(s) that describe this KIM Item.

Albe K, Nordlund K, Averback RS (2002) Modeling the metal-semiconductor interaction: Analytical bond-order potential for platinum-carbon. Physical Review B 65(19):195124. doi:10.1103/PhysRevB.65.195124

Brenner DW (1990) Empirical potential for hydrocarbons for use in simulating the chemical vapor deposition of diamond films. Physical Review B 42(15):9458–9471. doi:10.1103/PhysRevB.42.9458

Brenner DW (1992) Erratum: Empirical potential for hydrocarbons for use in simulating the chemical vapor deposition of diamond films. Physical Review B 46(3):1948–1948. doi:10.1103/PhysRevB.46.1948.2

Item Citation Click here to download a citation in BibTeX format.
Short KIM ID
The unique KIM identifier code.
MO_500121566391_001
Extended KIM ID
The long form of the KIM ID including a human readable prefix (100 characters max), two underscores, and the Short KIM ID. Extended KIM IDs can only contain alpha-numeric characters (letters and digits) and underscores and must begin with a letter.
Tersoff_LAMMPS_Albe_Nordlund_Averback_PtC__MO_500121566391_001
Citable Link https://openkim.org/cite/MO_500121566391_001
KIM Item Type
Specifies whether this is a Stand-alone Model (software implementation of an interatomic model); Parameterized Model (parameter file to be read in by a Model Driver); Model Driver (software implementation of an interatomic model that reads in parameters).
Parameterized Model using Model Driver Tersoff_LAMMPS__MD_077075034781_002
DriverTersoff_LAMMPS__MD_077075034781_002
KIM API Version1.9.5
Previous Version Tersoff_LAMMPS_Albe_Nordlund_Averback_PtC__MO_500121566391_000

Verification Check Dashboard

(Click here to learn more about Verification Checks)

Grade Name Category Brief Description Full Results Aux File(s)
P vc-species-supported-as-stated mandatory
The model supports all species it claims to support; see full description.
Results Files
P vc-periodicity-support mandatory
Periodic boundary conditions are handled correctly; see full description.
Results Files
P vc-permutation-symmetry mandatory
Total energy and forces are unchanged when swapping atoms of the same species; see full description.
Results Files
A vc-forces-numerical-derivative consistency
Forces computed by the model agree with numerical derivatives of the energy; see full description.
Results Files
P vc-dimer-continuity-c1 informational
The energy versus separation relation of a pair of atoms is C1 continuous (i.e. the function and its first derivative are continuous); see full description.
Results Files
P vc-objectivity informational
Total energy is unchanged and forces transform correctly under rigid-body translation and rotation; see full description.
Results Files
P vc-inversion-symmetry informational
Total energy is unchanged and forces change sign when inverting a configuration through the origin; see full description.
Results Files
P vc-memory-leak informational
The model code does not have memory leaks (i.e. it releases all allocated memory at the end); see full description.
Results Files
P vc-thread-safe mandatory
The model returns the same energy and forces when computed in serial and when using parallel threads for a set of configurations. Note that this is not a guarantee of thread safety; see full description.
Results Files

Visualizers (in-page)


BCC Lattice Constant

This bar chart plot shows the mono-atomic body-centered cubic (bcc) lattice constant predicted by the current model (shown in the unique color) compared with the predictions for all other models in the OpenKIM Repository that support the species. The vertical bars show the average and standard deviation (one sigma) bounds for all model predictions. Graphs are generated for each species supported by the model.

Species: C
Species: Pt

Click on any thumbnail to get a full size image.



Cohesive Energy Graph

This graph shows the cohesive energy versus volume-per-atom for the current mode for four mono-atomic cubic phases (body-centered cubic (bcc), face-centered cubic (fcc), simple cubic (sc), and diamond). The curve with the lowest minimum is the ground state of the crystal if stable. (The crystal structure is enforced in these calculations, so the phase may not be stable.) Graphs are generated for each species supported by the model.

Species: C
Species: Pt

Click on any thumbnail to get a full size image.



Diamond Lattice Constant

This bar chart plot shows the mono-atomic face-centered diamond lattice constant predicted by the current model (shown in the unique color) compared with the predictions for all other models in the OpenKIM Repository that support the species. The vertical bars show the average and standard deviation (one sigma) bounds for all model predictions. Graphs are generated for each species supported by the model.

Species: C
Species: Pt

Click on any thumbnail to get a full size image.



FCC Lattice Constant

This bar chart plot shows the mono-atomic face-centered cubic (fcc) lattice constant predicted by the current model (shown in red) compared with the predictions for all other models in the OpenKIM Repository that support the species. The vertical bars show the average and standard deviation (one sigma) bounds for all model predictions. Graphs are generated for each species supported by the model.

Species: C
Species: Pt

Click on any thumbnail to get a full size image.



SC Lattice Constant

This bar chart plot shows the mono-atomic simple cubic (sc) lattice constant predicted by the current model (shown in the unique color) compared with the predictions for all other models in the OpenKIM Repository that support the species. The vertical bars show the average and standard deviation (one sigma) bounds for all model predictions. Graphs are generated for each species supported by the model.

Species: C
Species: Pt

Click on any thumbnail to get a full size image.



Cubic Crystal Basic Properties Table

Species: C

Species: Pt



Tests

CohesiveEnergyVsLatticeConstant__TD_554653289799_001
This Test Driver uses LAMMPS to compute the cohesive energy of a given monoatomic cubic
lattice (fcc, bcc, sc, or diamond) at a variety of lattice spacings. The lattice spacings
range from a_min (=a_min_frac*a_0) to a_max (=a_max_frac*a_0) where a_0, a_min_frac, and
a_max_frac are read from stdin (a_0 is typically approximately equal to the equilibrium lattice
constant). The precise scaling and number of lattice spacings sampled between a_min and a_0
(a_0 and a_max) is specified by two additional parameters passed from stdin: N_lower and
samplespacing_lower (N_upper and samplespacing_upper). Please see README.txt for further details.
Test Test Results Link to Test Results page Benchmark time
Usertime muliplied by the Whetstone Benchmark. This number can be used (approximately) to compare the performance of different models independently of the architecture on which the test was run.

Measured in Millions of Whetstone Instructions (MWI)
CohesiveEnergyVsLatticeConstant_bcc_C__TE_381992859743_001 view 1794
CohesiveEnergyVsLatticeConstant_bcc_Pt__TE_852024024775_001 view 1471
CohesiveEnergyVsLatticeConstant_diamond_C__TE_609752483801_001 view 1759
CohesiveEnergyVsLatticeConstant_diamond_Pt__TE_607297691797_001 view 1579
CohesiveEnergyVsLatticeConstant_fcc_C__TE_004682584752_001 view 1902
CohesiveEnergyVsLatticeConstant_fcc_Pt__TE_164136256057_001 view 1543
CohesiveEnergyVsLatticeConstant_sc_C__TE_095514597201_001 view 1364
CohesiveEnergyVsLatticeConstant_sc_Pt__TE_157772593014_001 view 1579
ElasticConstantsCubic__TD_011862047401_003
Measures the cubic elastic constants for some common crystal types (fcc, bcc, sc) by calculating the hessian of the energy density with respect to strain. Error estimate is reported due to the numerical differentiation.

This version fixes the number of repeats in the species key.
Test Test Results Link to Test Results page Benchmark time
Usertime muliplied by the Whetstone Benchmark. This number can be used (approximately) to compare the performance of different models independently of the architecture on which the test was run.

Measured in Millions of Whetstone Instructions (MWI)
ElasticConstantsCubic_bcc_C__TE_658794163909_003 view 1400
ElasticConstantsCubic_bcc_Pt__TE_044796406471_003 view 1292
ElasticConstantsCubic_fcc_C__TE_000146156270_003 view 1328
ElasticConstantsCubic_fcc_Pt__TE_304169980530_003 view 1400
ElasticConstantsCubic_sc_C__TE_994329625827_003 view 1005
ElasticConstantsCubic_sc_Pt__TE_076340850633_003 view 1184
ElasticConstantsHexagonal__TD_612503193866_002
Measures the hexagonal elastic constants for hcp structure by calculating the hessian of the energy density with respect to strain. Error estimate is reported due to the numerical differentiation.

This version fixes the number of repeats in the species key and the coordinate of the 2nd atom in the normed basis.
Test Test Results Link to Test Results page Benchmark time
Usertime muliplied by the Whetstone Benchmark. This number can be used (approximately) to compare the performance of different models independently of the architecture on which the test was run.

Measured in Millions of Whetstone Instructions (MWI)
ElasticConstantsHexagonal_hcp_C__TE_638600582934_002 view 1292
ElasticConstantsHexagonal_hcp_Pt__TE_328579240125_002 view 1364
LatticeConstant2DHexagonalEnergy__TD_034540307932_000
This Test Driver computes the equilibrium lattice spacing and cohesive energy of a 2D hexagonal monolayer crystal using Polak-Ribiere conjugate gradient minimization in LAMMPS. Through pipeline.stdin.tpl, the user supplies the choice of structure type, an initial guess at the equilibrium lattice spacing and the two atomic species comprising the crystal.
Test Test Results Link to Test Results page Benchmark time
Usertime muliplied by the Whetstone Benchmark. This number can be used (approximately) to compare the performance of different models independently of the architecture on which the test was run.

Measured in Millions of Whetstone Instructions (MWI)
LatticeConstant2DHexagonalEnergy_Graphene__TE_638394465817_000 view 108
LatticeConstantCubicEnergy__TD_475411767977_004
Equilibrium lattice constant and cohesive energy of a cubic lattice at zero temperature and pressure.
Test Test Results Link to Test Results page Benchmark time
Usertime muliplied by the Whetstone Benchmark. This number can be used (approximately) to compare the performance of different models independently of the architecture on which the test was run.

Measured in Millions of Whetstone Instructions (MWI)
LatticeConstantCubicEnergy_bcc_C__TE_035231992677_004 view 682
LatticeConstantCubicEnergy_bcc_Pt__TE_456905666653_004 view 682
LatticeConstantCubicEnergy_diamond_C__TE_072855742236_004 view 574
LatticeConstantCubicEnergy_diamond_Pt__TE_136530762051_004 view 646
LatticeConstantCubicEnergy_fcc_C__TE_200775201868_004 view 502
LatticeConstantCubicEnergy_fcc_Pt__TE_202249747456_004 view 682
LatticeConstantCubicEnergy_sc_C__TE_515273288513_004 view 646
LatticeConstantCubicEnergy_sc_Pt__TE_671050090410_004 view 790
LatticeConstantHexagonalEnergy__TD_942334626465_003
Calculates lattice constant by minimizing energy function.

This version fixes the output format problems in species and stress, and adds support for PURE and OPBC neighbor lists. The cell used for calculation is switched from a hexagonal one to an orthorhombic one to comply with the requirement of OPBC.
Test Test Results Link to Test Results page Benchmark time
Usertime muliplied by the Whetstone Benchmark. This number can be used (approximately) to compare the performance of different models independently of the architecture on which the test was run.

Measured in Millions of Whetstone Instructions (MWI)
LatticeConstantHexagonalEnergy_hcp_C__TE_698171651321_003 view 4522
LatticeConstantHexagonalEnergy_hcp_Pt__TE_646115617497_003 view 4953
PhononDispersionCurve__TD_530195868545_002
Calculates the phonon dispersion relations for fcc lattices and records the results as curves.
Test Test Results Link to Test Results page Benchmark time
Usertime muliplied by the Whetstone Benchmark. This number can be used (approximately) to compare the performance of different models independently of the architecture on which the test was run.

Measured in Millions of Whetstone Instructions (MWI)
PhononDispersionCurve_fcc_Pt__TE_751500878459_002 view 97187
VacancyFormationEnergyRelaxationVolume__TD_647413317626_000
Computes the monovacancy formation energy and relaxation volume for cubic and hcp monoatomic crystals.
Test Test Results Link to Test Results page Benchmark time
Usertime muliplied by the Whetstone Benchmark. This number can be used (approximately) to compare the performance of different models independently of the architecture on which the test was run.

Measured in Millions of Whetstone Instructions (MWI)
VacancyFormationEnergyRelaxationVolume_fcc_Pt__TE_437812956174_000 view 344929
VacancyFormationMigration__TD_554849987965_000
Computes the monovacancy formation and migration energies for cubic and hcp monoatomic crystals.
Test Test Results Link to Test Results page Benchmark time
Usertime muliplied by the Whetstone Benchmark. This number can be used (approximately) to compare the performance of different models independently of the architecture on which the test was run.

Measured in Millions of Whetstone Instructions (MWI)
VacancyFormationMigration_fcc_Pt__TE_143190656999_000 view 636348





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Tersoff_LAMMPS__MD_077075034781_002.txz Tar+XZ Linux and OS X archive
Tersoff_LAMMPS__MD_077075034781_002.zip Zip Windows archive

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