Citations
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This panel provides information on past usage of this interatomic potential (IP) powered by the OpenKIM Deep Citation framework. The word cloud indicates typical applications of the potential. The bar chart shows citations per year of this IP (bars are divided into articles that used the IP (green) and those that did not (blue)). The complete list of articles that cited this IP is provided below along with the Deep Citation determination on usage. See the Deep Citation documentation for more information.
3059 Citations (754 used)
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USED (high confidence) S. Stephan, S. Schmitt, H. Hasse, and H. Urbassek, “Molecular dynamics simulation of the Stribeck curve: Boundary lubrication, mixed lubrication, and hydrodynamic lubrication on the atomistic level,” Friction. 2023. link Times cited: 3 USED (high confidence) W. Xiong, W. Zhou, P. Sun, and S. Yuan, “Enhanced hydrogen-gas permeation through rippled graphene,” Physical Review B. 2023. link Times cited: 1 Abstract: The penetration of atomic hydrogen through defect-free graph… read moreAbstract: The penetration of atomic hydrogen through defect-free graphene was generally predicted to have a barrier of at least several eV, which is much higher than the 1 eV barrier measured for hydrogen-gas permeation through pristine graphene membranes. Herein, our density functional theory calculations show that ripples, which are ubiquitous in atomically thin crystals and mostly overlooked in the previous simulations, can significantly reduce the barriers for all steps constituting the mechanism of hydrogen-gas permeation through graphene membranes, including dissociation of hydrogen molecules, reconstruction of the dissociated hydrogen atoms and their flipping across graphene. Especially, the flipping barrier of hydrogen atoms from a cluster configuration is found to decrease rapidly down to<1 eV with increasing ripples' curvature. The estimated hydrogen permeation rates by fully considering the distribution of ripples with all realistic curvatures and the major reaction steps that occurred on them are quite close to the experimental measurements. Our work provides insights into the fundamental understanding of hydrogen-gas permeation through graphene membranes and emphasizes the importance of nanoscale non-flatness (ripples) in explaining many surface and transport phenomena (for example, functionalization, corrosion and separation) in graphene and other two-dimensional materials. read less USED (high confidence) A. Diggs et al., “Hydrogen-induced degradation dynamics in silicon heterojunction solar cells via machine learning,” Communications Materials. 2023. link Times cited: 1 USED (high confidence) B. T. Spann et al., “Semiconductor Thermal and Electrical Properties Decoupled by Localized Phonon Resonances,” Advanced Materials. 2023. link Times cited: 0 Abstract: Thermoelectric materials convert heat into electricity throu… read moreAbstract: Thermoelectric materials convert heat into electricity through thermally driven charge transport in solids or vice versa for cooling. To compete with conventional energy‐conversion technologies, a thermoelectric material must possess the properties of both an electrical conductor and a thermal insulator. However, these properties are normally mutually exclusive because of the interconnection between scattering mechanisms for charge carriers and phonons. Recent theoretical investigations on sub‐device scales have revealed that nanopillars attached to a membrane exhibit a multitude of local phonon resonances, spanning the full spectrum, that couple with the heat‐carrying phonons in the membrane and cause a reduction in the in‐plane thermal conductivity, with no expected change in the electrical properties because the nanopillars are outside the pathway of voltage generation and charge transport. Here this effect is demonstrated experimentally for the first time by investigating device‐scale suspended silicon membranes with GaN nanopillars grown on the surface. The nanopillars cause up to 21% reduction in the thermal conductivity while the power factor remains unaffected, thus demonstrating an unprecedented decoupling in the semiconductor's thermoelectric properties. The measured thermal conductivity behavior for coalesced nanopillars and corresponding lattice‐dynamics calculations provide evidence that the reductions are mechanistically tied to the phonon resonances. This finding paves the way for high‐efficiency solid‐state energy recovery and cooling. read less USED (high confidence) X. Ma, X. Tan, D. X. Guo, and S. Wen, “Active control of friction realized by vibrational excitation: Numerical simulation based on the Prandtl-Tomlinson model and molecular dynamics,” Friction. 2022. link Times cited: 2 USED (high confidence) A. Giri, C. Dionne, and P. Hopkins, “Atomic coordination dictates vibrational characteristics and thermal conductivity in amorphous carbon,” npj Computational Materials. 2022. link Times cited: 9 USED (high confidence) L. Barbisan, A. Marzegalli, and F. Montalenti, “Atomic-scale insights on the formation of ordered arrays of edge dislocations in Ge/Si(001) films via molecular dynamics simulations,” Scientific Reports. 2022. link Times cited: 2 USED (high confidence) P. R. Chowdhury and X. Ruan, “Unexpected thermal conductivity enhancement in aperiodic superlattices discovered using active machine learning,” npj Computational Materials. 2022. link Times cited: 5 USED (high confidence) V. Reshetnyak, O. Reshetnyak, A. Aborkin, and A. Filippov, “Interatomic Interaction at the Aluminum–Fullerene C60 Interface,” Journal of Experimental and Theoretical Physics. 2022. link Times cited: 1 USED (high confidence) Y. Wang et al., “Fabrication of three-dimensional sin-shaped ripples using a multi-tip diamond tool based on the force modulation approach,” Journal of Manufacturing Processes. 2021. link Times cited: 8 USED (high confidence) M. Gatchell et al., “Survival of polycyclic aromatic hydrocarbon knockout fragments in the interstellar medium,” Nature Communications. 2021. link Times cited: 10 USED (high confidence) J. S. Lima, I. S. Oliveira, S. Azevedo, A. Freitas, C. Bezerra, and L. Machado, “Mechanical and electronic properties of boron nitride nanosheets with graphene domains under strain,” RSC Advances. 2021. link Times cited: 1 Abstract: Hybrid structures comprised of graphene domains embedded in … read moreAbstract: Hybrid structures comprised of graphene domains embedded in larger hexagonal boron nitride (h-BN) nanosheets were first synthesized in 2013. However, the existing theoretical investigations on them have only considered relaxed structures. In this work, we use Density Functional Theory (DFT) and Molecular Dynamics (MD) simulations to investigate the mechanical and electronic properties of this type of nanosheet under strain. Our results reveal that the Young's modulus of the hybrid sheets depends only on the relative concentration of graphene and h-BN in the structure, showing little dependence on the shape of the domain or the size of the structure for a given concentration. Regarding the tensile strength, we obtained higher values using triangular graphene domains. We find that the studied systems can withstand large strain values (between 15% and 22%) before fracture, which always begins at the weaker C–B bonds located at the interface between the two materials. Concerning the electronic properties, we find that by combining composition and strain, we can produce hybrid sheets with band gaps spanning an extensive range of values (between 1.0 eV and 3.5 eV). Our results also show that the band gap depends more on the composition than on the external strain, particularly for structures with low carbon concentration. The combination of atomic-scale thickness, high ultimate strain, and adjustable band gap suggests applications of h-BN nanosheets with graphene domains in wearable electronics. read less USED (high confidence) M. Alborzi and A. Rajabpour, “Thermal transport in van der Waals graphene/boron-nitride structure: a molecular dynamics study,” The European Physical Journal Plus. 2021. link Times cited: 7 USED (high confidence) Z. Zhang, Y. Guo, M. Bescond, J. Chen, M. Nomura, and S. Volz, “Thermal self-synchronization of nano-objects,” Journal of Applied Physics. 2021. link Times cited: 3 Abstract: Self-synchronization is a ubiquitous phenomenon in nature, i… read moreAbstract: Self-synchronization is a ubiquitous phenomenon in nature, in which oscillators are collectively locked in frequency and phase through mutual interactions. While self-synchronization requires the forced excitation of at least one of the oscillators, we demonstrate that this mechanism spontaneously appears due to activation from thermal fluctuations. By performing molecular dynamics simulations, we demonstrate self-synchronization in a platform supporting doped silicon resonator nanopillars having different eigenfrequencies. We find that pillar’s vibrations are spontaneously converging to the same frequency and phase. In addition, the dependencies on the intrinsic frequency difference and the coupling strength agree well with the Kuramoto model predictions. More interestingly, we find that a balance between energy dissipation resulting from phonon–phonon scattering and potential energy between oscillators is reached to maintain synchronization. The balance could be suppressed by increasing the membrane size. While microscopic stochastic motions are known to follow random probability distributions, we finally prove that they can also yield coherent collective motions via self-synchronization. read less USED (high confidence) P. Rez, T. M. Boland, C. Elsässer, and A. K. Singh, “Localized Phonon Densities of States at Grain Boundaries in Silicon,” Microscopy and Microanalysis. 2021. link Times cited: 2 Abstract: Since it is now possible to record vibrational spectra at na… read moreAbstract: Since it is now possible to record vibrational spectra at nanometer scales in the electron microscope, it is of interest to explore whether extended defects in crystals such as dislocations or grain boundaries will result in measurable changes of the phonon densities of states (dos) that are reflected in the spectra. Phonon densities of states were calculated for a set of high angle grain boundaries in silicon. The boundaries are modeled by supercells with up to 160 atoms, and the vibrational densities of states were calculated by taking the Fourier transform of the velocity–velocity autocorrelation function from molecular dynamics simulations with larger supercells doubled in all three directions. In selected cases, the results were checked on the original supercells by comparison with the densities of states obtained by diagonalizing the dynamical matrix calculated using density functional theory. Near the core of the grain boundary, the height of the optic phonon peak in the dos at 60 meV was suppressed relative to features due to acoustic phonons that are largely unchanged relative to their bulk values. This can be attributed to the variation in the strength of bonds in grain boundary core regions where there is a range of bond lengths. read less USED (high confidence) L. Yang, Y. Jiang, and Y. Zhou, “Quantitatively predicting modal thermal conductivity of nanocrystalline Si by full-band Monte Carlo simulations,” Physical Review B. 2021. link Times cited: 4 Abstract: Thermal transport of nanocrystalline Si is of great importan… read moreAbstract: Thermal transport of nanocrystalline Si is of great importance for the application of thermoelectrics. A better understanding of the modal thermal conductivity of nanocrystalline Si will be expected to benefit the efficiency of thermoelectrics. In this work, the variance reduced Monte Carlo simulation with full band of phonon dispersion is applied to study the modal thermal conductivity of nanocrystalline Si. Importantly, the phonon modal transmissions across the grain boundaries which are modeled by the amorphous Si interface are calculated by the mode-resolved atomistic Greens function method. The predicted ratios of thermal conductivity of nanocrystalline Si to that of bulk Si agree well with that of the experimental measurements in a wide range of grain size. The thermal conductivity of nanocrystalline Si is decreased from 54 percent to 3 percent and the contribution of phonons with mean free path larger than the grain size increases from 30 percent to 96 percnet as the grain size decreases from 550 nm to 10 nm. This work demonstrates that the full band Monte Carlo simulation using phonon modal transmission by the mode-resolved atomistic Greens function method can capture the phonon transport picture in complex nanostructures, and therefore can provide guidance for designing high performance Si based thermoelectrics. read less USED (high confidence) N. Kamanina, K. Borodianskiy, and D. Kvashnin, “Surface Heterostructure of Aluminum with Carbon Nanotubes Obtained by Laser-Oriented Deposition,” Coatings. 2021. link Times cited: 3 Abstract: Al is one of the most widely applicable metallic materials d… read moreAbstract: Al is one of the most widely applicable metallic materials due to its advanced properties. However, its main drawback is its strength, which is relatively low compared to ferrous alloys. This issue may be resolved using different approaches. In the present work, a heterostructure of Al substrate with a modified surface with carbon nanotubes (CNTs) was studied. This heterostructure was obtained using the laser-oriented deposition technique. The obtained results showed a slight reduction in the reflectivity of the obtained Al substrate with embedded CNTs compared to pure Al. Additionally, the obtained surface heterostructure showed enhancement in microhardness and higher hydrophobicity. Simulation of the CNT embedding process revealed that CNT penetration strongly depends on the diameter. Hence, the penetration increases when the diameter decreases. read less USED (high confidence) P. Marashizadeh, M. Abshirini, M. Saha, L. Huang, and Y. Liu, “Interfacial Properties of ZnO Nanowire-Enhanced Carbon Fiber Composites: A Molecular Dynamics Simulation Study.,” Langmuir : the ACS journal of surfaces and colloids. 2021. link Times cited: 12 Abstract: The interfacial properties of ZnO nanowire (NW)/carbon fiber… read moreAbstract: The interfacial properties of ZnO nanowire (NW)/carbon fiber-reinforced epoxy composites are investigated using molecular dynamics (MD) simulations. An atomistic representative volume element (RVE) is developed in which a single ZnO NW is aligned on carbon fiber and embedded in the cross-linked epoxy. Effects of ZnO NWs on the fiber-matrix adhesion are studied by evaluating the fiber and the enhanced matrix interaction. The traction-separation behavior in both sliding mode (shear separation) and opening mode (normal separation) is evaluated. The cohesive parameters, including the peak traction and adhesion energy, are calculated in each mode. Different numbers of cross-linked epoxy units in the system are studied and validated. The interfacial properties of the hybrid system are compared with the simulated bare RVE containing fiber and epoxy. MD results showed that the interfacial strength is increased from 485 MPa to 1066 MPa with the ZnO NWs. The adhesion energy in both opening and sliding modes is significantly improved by growing ZnO NWs on the carbon fibers. In addition, the hybrid system shows more rate-independent behavior compared with the bare system in the opening mode. read less USED (high confidence) V. V. Kuryliuk, S. S. Semchuk, A. M. Kuryliuk, and P. P. Kogutyuk, “Теплопровідність Si нанониток з аморфною SiO2 обо-лонкою: молекулярно-динамічний розрахунок,” Ukrainian Journal of Physics. 2021. link Times cited: 1 Abstract: Методом нерiвноважної молекулярної динамiки дослiджено проце… read moreAbstract: Методом нерiвноважної молекулярної динамiки дослiджено процеси теплового транспорту в Si нанонитках, покритих оболонкою аморфного SiO2. Розглянуто вплив товщини аморфного шару, радiуса кристалiчного кремнiєвого ядра I температури на величину коефiцiєнта теплопровiдностi нанониток. Встановлено, що збiльшення товщини аморфної оболонки зумовлює зменшення теплопровiдностi Si/SiO2 нанониток типу ядро-оболонка. Результати також показують, що теплопровiднiсть Si/SiO2 нанониток при 300 К зростає зi збiльшенням площi поперечного перерiзу кристалiчного Si ядра. Виявлено, що температурна залежнiсть коефiцiєнта теплопровiдностi Si/SiO2 нанониток типу ядро-оболонка є суттєво слабшою, нiж в кристалiчних кремнiєвих нанонитках. Показано, що така вiдмiннiсть є результатом рiзних домiнуючих механiзмiв фононного розсiювання в нанонитках. Отриманi результати демонструють, що нанонитки Si/SiO2 є перспективним матерiалом для термоелектричних застосувань. read less USED (high confidence) Y. Wang, J. He, N. Wan, and A. Zhang, “Auxetic behavior of a novel graphene assembly model,” Meccanica. 2021. link Times cited: 0 USED (high confidence) E. Fadaly et al., “Unveiling Planar Defects in Hexagonal Group IV Materials,” Nano Letters. 2021. link Times cited: 6 Abstract: Recently synthesized hexagonal group IV materials are a prom… read moreAbstract: Recently synthesized hexagonal group IV materials are a promising platform to realize efficient light emission that is closely integrated with electronics. A high crystal quality is essential to assess the intrinsic electronic and optical properties of these materials unaffected by structural defects. Here, we identify a previously unknown partial planar defect in materials with a type I3 basal stacking fault and investigate its structural and electronic properties. Electron microscopy and atomistic modeling are used to reconstruct and visualize this stacking fault and its terminating dislocations in the crystal. From band structure calculations coupled to photoluminescence measurements, we conclude that the I3 defect does not create states within the hex-Ge and hex-Si band gap. Therefore, the defect is not detrimental to the optoelectronic properties of the hex-SiGe materials family. Finally, highlighting the properties of this defect can be of great interest to the community of hex-III-Ns, where this defect is also present. read less USED (high confidence) H. Li, Q. Rui, X. Wang, and W. Yu, “Molecular Dynamics Simulations on Influence of Defect on Thermal Conductivity of Silicon Nanowires,” Frontiers in Energy Research. 2021. link Times cited: 1 Abstract: A non-equilibrium molecular dynamics simulation method is co… read moreAbstract: A non-equilibrium molecular dynamics simulation method is conducted to study the thermal conductivity (TC) of silicon nanowires (SiNWs) with different types of defects. The impacts of defect position, porosity, temperature, and length on the TC of SiNWs are analyzed. The numerical results indicate that SiNWs with surface defects have higher TC than SiNWs with inner defects, the TC of SiNWs gradually decreases with the increase of porosity and temperature, and the impact of temperature on the TC of SiNWs with defects is weaker than the impact on the TC of SiNWs with no defects. The TC of SiNWs increases as their length increases. SiNWs with no defects have the highest corresponding frequency of low-frequency peaks of phonon density of states; however, when SiNWs have inner defects, the lowest frequency is observed. Under the same porosity, the average phonon participation of SiNWs with surface defects is higher than that of SiNWs with inner defects. read less USED (high confidence) G. Barbalinardo, Z. Chen, H. Dong, Z. Fan, and D. Donadio, “Ultrahigh Convergent Thermal Conductivity of Carbon Nanotubes from Comprehensive Atomistic Modeling.,” Physical review letters. 2021. link Times cited: 10 Abstract: Anomalous heat transport in one-dimensional nanostructures, … read moreAbstract: Anomalous heat transport in one-dimensional nanostructures, such as nanotubes and nanowires, is a widely debated problem in condensed matter and statistical physics, with contradicting pieces of evidence from experiments and simulations. Using a comprehensive modeling approach, comprised of lattice dynamics and molecular dynamics simulations, we proved that the infinite length limit of the thermal conductivity of a (10,0) single-wall carbon nanotube is finite but this limit is reached only for macroscopic lengths due to a thermal phonon mean free path of several millimeters. Our calculations showed that the extremely high thermal conductivity of this system at room temperature is dictated by quantum effects. Modal analysis showed that the divergent nature of thermal conductivity, observed in one-dimensional model systems, is suppressed in carbon nanotubes by anharmonic scattering channels provided by the flexural and optical modes with polarization in the plane orthogonal to the transport direction. read less USED (high confidence) N. Luhadiya, S. I. Kundalwal, and S. Sahu, “Investigation of hydrogen adsorption behavior of graphene under varied conditions using a novel energy-centered method,” Carbon Letters. 2021. link Times cited: 17 USED (high confidence) O. Farzadian, C. Spitas, and K. Kostas, “Graphene-carbon nitride interface-geometry effects on thermal rectification: a molecular dynamics simulation,” Nanotechnology. 2021. link Times cited: 14 Abstract: In this paper we expand our previous study on phonon thermal… read moreAbstract: In this paper we expand our previous study on phonon thermal rectification (TR) exhibited in a hybrid graphene-carbon nitride system (G−C3N) to investigate the system’s behavior under a wider range of temperature differences, between the two employed baths, and the effects of media-interface geometry on the rectification factor. Our simulation results reveal a sigmoid relation between TR and temperature difference, with a sample-size depending upper asymptote occurring at generally large temperature differences. The achieved TR values are significant and go up to around 120% for ΔT = 150 K. Furthermore, the consideration of varying media-interface geometries yields a non-negligible effect on TR and highlights areas for further investigation. Finally, calculations of Kapitza resistance at the G-C3N interface are performed for assisting us in the understanding of interface-geometry effects on TR. read less USED (high confidence) S. Wang and K. Komvopoulos, “A molecular dynamics study of the oxidation mechanism, nanostructure evolution, and friction characteristics of ultrathin amorphous carbon films in vacuum and oxygen atmosphere,” Scientific Reports. 2021. link Times cited: 7 USED (high confidence) W. Nöhring, J.-C. Griesser, P. Dondl, and L. Pastewka, “Surface lattice Green’s functions for high-entropy alloys,” Modelling and Simulation in Materials Science and Engineering. 2021. link Times cited: 0 Abstract: We study the surface elastic response of pure Ni, the random… read moreAbstract: We study the surface elastic response of pure Ni, the random alloy FeNiCr and an average FeNiCr alloy in terms of the surface lattice Green’s function. We propose a scheme for computing per-site Green’s function and study their per-site variations. The average FeNiCr alloys accurately reproduces the mean Green’s function of the full random alloy. Variation around this mean is largest near the edge of the surface Brillouin-zone and decays as q −2 with wavevector q towards the Γ-point. We also present expressions for the continuum surface Green’s function of anisotropic solids of finite and infinite thickness and show that the atomistic Green’s function approaches continuum near the Γ-point. Our results are a first step towards efficient contact calculations and Peierls–Nabarro type models for dislocations in high-entropy alloys. read less USED (high confidence) G. Zhu 朱, C. Zhao 赵, X. Wang 王, and J. Wang 王, “Tuning Thermal Conductivity in Si Nanowires with Patterned Structures,” Chinese Physics Letters. 2021. link Times cited: 2 Abstract: Tuning the thermal conductivity of silicon nanowires (Si-NWs… read moreAbstract: Tuning the thermal conductivity of silicon nanowires (Si-NWs) is essential for realization of future thermoelectric devices. The corresponding management of thermal transport is strongly related to the scattering of phonons, which are the primary heat carriers in Si-NWs. Using the molecular dynamics method, we find that the scattering of phonons from internal body defects is stronger than that from surface structures in the low-porosity range. Based on our simulations, we propose the concept of an exponential decay in thermal conductivity with porosity, specifically in the low-porosity range. In contrast, the thermal conductivity of Si-NWs with a higher porosity approaches the amorphous limit, and is insensitive to specific phonon scattering processes. Our findings contribute to a better understanding of the tuning of thermal conductivity in Si-NWs by means of patterned nanostructures, and may provide valuable insights into the optimal design of one-dimensional thermoelectric materials. read less USED (high confidence) C. Woods et al., “Charge-polarized interfacial superlattices in marginally twisted hexagonal boron nitride,” Nature Communications. 2021. link Times cited: 0 USED (high confidence) M. Vaezi, H. N. Pishkenari, and A. Nemati, “Mechanism of C60 rotation and translation on hexagonal boron-nitride monolayer.,” The Journal of chemical physics. 2020. link Times cited: 8 Abstract: Newly synthesized nanocars have shown great potential to tra… read moreAbstract: Newly synthesized nanocars have shown great potential to transport molecular payloads. Since wheels of nanocars dominate their motion, the study of the wheels helps us to design a suitable surface for them. We investigated C60 thermal diffusion on the hexagonal boron-nitride (h-BN) monolayer as the wheel of nanocars. We calculated C60 potential energy variation during the translational and rotational motions at different points on the substrate. The study of the energy barriers and diffusion coefficients of the molecule at different temperatures indicated three noticeable changes in the C60 motion regime. C60 starts to slide on the surface at 30 K-40 K, slides freely on the boron-nitride monolayer at 100 K-150 K, and shows rolling motions at temperatures higher than 500 K. The anomaly parameter of the motion reveals that C60 has a diffusive motion on the boron-nitride substrate at low temperatures and experiences superdiffusion with Levy flight motions at higher temperatures. A comparison of the fullerene motion on the boron-nitride and graphene surfaces demonstrated that the analogous structure of the graphene and hexagonal boron-nitride led to similar characteristics such as anomaly parameters and the temperatures at which the motion regime changes. The results of this study empower us to predict that fullerene prefers to move on boron-nitride sections on a hybrid substrate composed of graphene and boron-nitride. This property can be utilized to design pathways or regions on a surface to steer or trap the C60 or other molecular machines, which is a step toward directional transportation at the molecular scale. read less USED (high confidence) P. R. Chowdhury and X. Ruan, “An Iterative Machine Learning Approach for Discovering Unexpected Thermal Conductivity Enhancement in Aperiodic Superlattices,” arXiv: Mesoscale and Nanoscale Physics. 2020. link Times cited: 0 Abstract: While machine learning (ML) has shown increasing effectivene… read moreAbstract: While machine learning (ML) has shown increasing effectiveness in optimizing materials properties under known physics, its application in challenging conventional wisdom and discovering new physics still remains challenging due to its interpolative nature. In this work, we demonstrate the potential of using ML for such applications by implementing an adaptive ML-accelerated search process that can discover unexpected lattice thermal conductivity ($\kappa_l$) enhancement instead of reduction in aperiodic superlattices (SLs) as compared to periodic superlattices. We use non-equilibrium molecular dynamics (NEMD) simulations for high-fidelity calculations of $\kappa_l$ for a small fraction of SLs in the search space, along with a convolutional neural network (CNN) which can rapidly predict $\kappa_l$ for a large number of structures. To ensure accurate prediction by the CNN for the target unknown structures, we iteratively identify aperiodic SLs containing structural features which lead to locally enhanced thermal transport, and include them as additional training data for the CNN in each iteration. As a result, our CNN can accurately predict the high $\kappa_l$ of aperiodic SLs that are absent from the initial training dataset, which allows us to identify the previously unseen exceptional structures. The identified RML structures exhibit increased coherent phonon contribution to thermal conductivity owing to the presence of closely spaced interfaces. Our work describes a general purpose machine learning approach for identifying low-probability-of-occurrence exceptional solutions within an extremely large subspace and discovering the underlying physics. read less USED (high confidence) L. Kiani, J. Hasanzadeh, and F. Yousefi, “Phonon modes contribution in thermal rectification in graphene-C3B junction: A molecular dynamics study,” Physica E: Low-dimensional Systems and Nanostructures. 2020. link Times cited: 6 USED (high confidence) H. Dong, S. Xiong, Z. Fan, P. Qian, Y. Su, and T. Ala‐Nissila, “Interpretation of apparent thermal conductivity in finite systems from equilibrium molecular dynamics simulations,” Physical Review B. 2020. link Times cited: 4 Abstract: We propose a way to properly interpret the apparent thermal … read moreAbstract: We propose a way to properly interpret the apparent thermal conductivity obtained for finite systems using equilibrium molecular dynamics simulations (EMD) with fixed or open boundary conditions in the transport direction. In such systems the heat current autocorrelation function develops negative values after a correlation time which is proportional to the length of the simulation cell in the transport direction. Accordingly, the running thermal conductivity develops a maximum value at the same correlation time and eventually decays to zero. By comparing EMD with nonequilibrium molecular dynamics (NEMD) simulations, we conclude that the maximum thermal conductivity from EMD in a system with domain length $2L$ is equal to the thermal conductivity from NEMD in a system with domain length $L$. This facilitates the use of nonperiodic-boundary EMD for thermal transport in finite samples in close correspondence to NEMD. read less USED (high confidence) J. Wallace, D. Chen, and L. Shao, “Irradiation-enhanced torsional buckling capacity of carbon nanotube bundles,” Journal of Applied Physics. 2020. link Times cited: 4 Abstract: Molecular dynamics simulations are used to understand the to… read moreAbstract: Molecular dynamics simulations are used to understand the torsional buckling of pristine and irradiated carbon nanotube (CNT) bundles. Irradiation-induced inter-tube defects are shown to significantly increase the critical buckling torque and critical buckling angle, while slightly increasing the torsional stiffness. In contrast, intra-tube defects are found to degrade the torsional properties. Such competing interactions cause irradiation enhancement to occur in large bundles where significant inter-tube bonding can occur. However, the irradiation enhancement effect becomes weak for very large bundles in which enhanced inter-tube interactions already exist in unirradiated bundles. In pristine CNT bundles of all sizes under torsional loading, CNTs can slip via the weakly interacting van der Waals force, whereas in the irradiated bundles, the inter-tube defects prevent slipping. The study further shows that the formation of one-dimensional carbon chain defects contributes to enhanced friction under slipping. read less USED (high confidence) N. W. Lundgren, G. Barbalinardo, and D. Donadio, “Mode localization and suppressed heat transport in amorphous alloys,” Physical Review B. 2020. link Times cited: 9 Abstract: Glasses usually represent the lower limit for the thermal co… read moreAbstract: Glasses usually represent the lower limit for the thermal conductivity of solids, but a fundamental understanding of lattice heat transport in amorphous materials can provide design rules to beat such a limit. Here we investigate the role of mass disorder in glasses by studying amorphous silicon-germanium alloy (a-${\mathrm{Si}}_{1\ensuremath{-}x}{\mathrm{Ge}}_{x}$) over the full range of atomic concentration from $x=0$ to $x=1$, using molecular dynamics and the quasiharmonic Green-Kubo lattice dynamics formalism. We find that the thermal conductivity of a-${\mathrm{Si}}_{1\ensuremath{-}x}{\mathrm{Ge}}_{x}$ as a function of $x$ exhibits a smoother U shape than in crystalline mass-disordered alloys. The main contribution to the initial drop of thermal conductivity at low Ge concentration stems from the localization of otherwise extended modes that make up the lowest 8% of the population by frequency. Contributions from intermediate frequency modes are decreased more gradually with increasing Ge to reach a broad minimum thermal conductivity between concentrations of Ge from $x=0.25$ to 0.75. Modal analysis unravels the correlations among localization, line broadening, and the contribution to thermal transport of modes within different frequency ranges. read less USED (high confidence) P. Fan, F. Ding, X. Luo, Y. Yan, Y. Geng, and Y. Wang, “A Simulated Investigation of Ductile Response of GaAs in Single-Point Diamond Turning and Experimental Validation,” Nanomanufacturing and Metrology. 2020. link Times cited: 11 USED (high confidence) S. Ju, S. Shimizu, and J. Shiomi, “Designing thermal functional materials by coupling thermal transport calculations and machine learning,” Journal of Applied Physics. 2020. link Times cited: 15 Abstract: Advances in materials informatics (MI), which combines mater… read moreAbstract: Advances in materials informatics (MI), which combines material property calculations/measurements and informatics algorithms, have realized properties in the nanostructures of thermal functional materials beyond what is accessible using empirical approaches based on physical instincts and models. In this Tutorial, we introduce technological procedures and underlying knowledge of MI combining thermal transport calculations and machine learning using an optimization problem of superlattice structures as an example (sample script available in the supplement). To provide fundamental guidance on how to use MI, we describe practical details about descriptors, objective functions, property calculators, machine learning (Bayesian optimization) algorithms, and optimization efficiencies. We then briefly review the recent successful applications of MI to design thermoelectric and thermal radiation materials. Finally, we summarize and provide future perspectives about the topic. read less USED (high confidence) G. Barbalinardo, Z. Chen, N. W. Lundgren, and D. Donadio, “Efficient anharmonic lattice dynamics calculations of thermal transport in crystalline and disordered solids,” arXiv: Materials Science. 2020. link Times cited: 23 Abstract: Understanding heat transport in semiconductors and insulator… read moreAbstract: Understanding heat transport in semiconductors and insulators is of fundamental importance because of its technological impact in electronics and renewable energy harvesting and conversion. Anharmonic Lattice Dynamics provides a powerful framework for the description of heat transport at the nanoscale. One of the advantages of this method is that it naturally includes quantum effects due to atoms vibrations, which are needed to compute the thermal properties of semiconductors widely used in nanotechnology, like silicon and carbon, even at room temperature. While the heat transport picture substantially differs between amorphous and crystalline semiconductors from a microscopic standpoint, a unified approach to simulate both crystals and glasses has been devised. Here we introduce a unified workflow, which implements both the Boltzmann Transport equation (BTE) and the Quasi Harmonic Green-Kubo (QHGK) methods. We discuss how the theory can be optimized to exploit modern parallel architectures, and how it is implemented in $\kappa ALDo$: a versatile and scalable open-source software to compute phonon transport in solids. This approach is applied to crystalline and partially disordered silicon-based systems, including bulk silicon and clathrates, and on silicon-germanium alloy clathrates with largely reduced thermal conductivity. read less USED (high confidence) S. Oyinbo and T. Jen, “A Molecular Dynamics Investigation of the Temperature Effect on the Mechanical Properties of Selected Thin Films for Hydrogen Separation,” Membranes. 2020. link Times cited: 3 Abstract: In this study, we performed nanoindentation test using the m… read moreAbstract: In this study, we performed nanoindentation test using the molecular dynamic (MD) approach on a selected thin film of palladium, vanadium, copper and niobium coated on the vanadium substrate at a loading rate of 0.5 Å/ps. The thermosetting control is applied with temperature variance from 300 to 700 K to study the mechanical characteristics of the selected thin films. The effects of temperature on the structure of the material, piling-up phenomena and sinking-in occurrence were considered. The simulation results of the analysis and the experimental results published in this literature were well correlated. The analysis of temperature demonstrated an understanding of the impact of the behaviour. As the temperature decreases, the indentation load increases for loading and unloading processes. Hence, this increases the strength of the material. In addition, the results demonstrate that the modulus of elasticity and thin-film hardness decreases in the order of niobium, vanadium, copper and palladium as the temperature increases. read less USED (high confidence) M. Rahman, S. Mitra, M. Motalab, and P. Bose, “Investigation on the mechanical properties and fracture phenomenon of silicon doped graphene by molecular dynamics simulation,” RSC Advances. 2020. link Times cited: 17 Abstract: Silicon doping is an effective way to modulate the bandgap o… read moreAbstract: Silicon doping is an effective way to modulate the bandgap of graphene that might open the door for graphene to the semiconductor industries. However, the mechanical properties of silicon doped graphene (SiG) also plays an important role to realize its full potential application in the electronics industry. Electronic and optical properties of silicon doped graphene are well studied, but, our understanding of mechanical and fracture properties of the doped structure is still in its infancy. In this study, molecular dynamics (MD) simulations are conducted to investigate the tensile properties of SiG by varying the concentration of silicon. It is found that as the concentration of silicon increases, both fracture stress and strain of graphene reduces substantially. Our MD results also suggest that only 5% of silicon doping can reduce the Young's modulus of graphene by ∼15.5% along the armchair direction and ∼13.5% along the zigzag direction. Tensile properties of silicon doped graphene have been compared with boron and nitrogen doped graphene. The effect of temperature, defects and crack length on the stress–strain behavior of SiG has also been investigated. Temperature studies reveal that SiG is less sensitive to temperature compared to free stranding graphene, additionally, increasing temperature causes deterioration of both fracture stress and strain of SiG. Both defects and cracks reduce the fracture stress and fracture strain of SiG remarkably, but the sensitivity to defects and cracks for SiG is larger compared to graphene. Fracture toughness of pre-cracked SiG has been investigated and results from MD simulations are compared with Griffith's theory. It has been found that for nano-cracks, SiG with larger crack length deviates more from Griffith's criterion and the degree of deviation is larger compared to graphene. Fracture phenomenon of pre-cracked SiG and the effect of strain rate on the tensile properties of SiG have been reported as well. These results will aid the design of SiG based semiconducting nanodevices. read less USED (high confidence) J. Xiao, B. Wen, B. Xu, X. Zhang, Y. Wang, and Y. Tian, “Intersectional nanotwinned diamond-the hardest polycrystalline diamond by design,” npj Computational Materials. 2020. link Times cited: 23 USED (high confidence) Z. Huang and R. X. Wang, “Electronic density of states engineering of a 3D 14 nm Si/Ge alloy metalattice,” Journal of Applied Physics. 2020. link Times cited: 0 Abstract: Si/Ge nanostructures have attracted much attention since the… read moreAbstract: Si/Ge nanostructures have attracted much attention since they are compatible with current microelectronics technology. The geometry and composition variations can be used to tune their electronic properties. Here, we introduce a 3D Si/Ge superlattice, metalattice, made of more volumetric meta-atoms and thinner metabonds between them. Its size varies from a few tens to hundreds of nanometers and can be taken as a mesoscale physics platform. We intend to bring a metallic character to such an alloy metalattice. This requires that the quantum confinement and chemical composition act in a complementary way. The tight-binding method is employed and it is confirmed that a 3D uniform density of states across the whole metalattice is possible. Search for the preferred electronic structure now transforms to the problem of finding the appropriate geometry. read less USED (high confidence) G. Wang, Z. Feng, Y. Hu, J. Liu, and Q. Zheng, “Effects of Anisotropy on Single Crystal Silicon in Polishing Non-Continuous Surface,” Micromachines. 2020. link Times cited: 4 Abstract: A molecular dynamics model of the diamond abrasive polishing… read moreAbstract: A molecular dynamics model of the diamond abrasive polishing the single crystal silicon is established. Crystal surfaces of the single crystal silicon in the Y-direction are (010), (011), and (111) surfaces, respectively. The effects of crystallographic orientations on polishing the non-continuous single crystal silicon surfaces are discussed from the aspects of surface morphology, displacement, polishing force, and phase transformation. The simulation results show that the Si(010) surface accumulates chips more easily than Si(011) and Si(111) surfaces. Si(010) and Si(011) workpieces are deformed in the entire pore walls on the entry areas of pores, while the Si(111) workpiece is a local large deformation on entry areas of the pores. Comparing the recovery value of the displacement in different workpieces, it can be seen that the elastic deformation of the A side in the Si(011) workpiece is larger than that of the A side in other workpieces. Pores cause the tangential force and normal force to fluctuate. The fluctuation range of the tangential force is small, and the fluctuation range of the normal force is large. Crystallographic orientations mainly affect the position where the tangential force reaches the maximum and minimum values and the magnitude of the decrease in the tangential force near the pores. The position of the normal force reaching the maximum and minimum values near the pores is basically the same, and different crystallographic orientations have no obvious effect on the drop of the normal force, except for a slight fluctuation in the value. The high-pressure phase transformation is the main way to change the crystal structure. The Si(111) surface is the cleavage surface of single crystal silicon, and the total number of main phase transformation atoms on the Si(111) surface is the largest among the three types of workpieces. In addition, the phase transformation in Si(010) and Si(011) workpieces extends to the bottom of pores, and the Si(111) workpiece does not extend to the bottom of pores. read less USED (high confidence) P. Brault, “Multiscale Molecular Dynamics Simulations of Fuel Cell Nanocatalyst Plasma Sputtering Growth and Deposition,” Energies. 2020. link Times cited: 2 Abstract: Molecular dynamics simulations (MDs) are carried out for pre… read moreAbstract: Molecular dynamics simulations (MDs) are carried out for predicting platinum Proton Exchange Membrane (PEM) fuel cell nanocatalyst growth on a model carbon electrode. The aim is to provide a one-shot simulation of the entire multistep process of deposition in the context of plasma sputtering, from sputtering of the target catalyst/transport to the electrode substrate/deposition on the porous electrode. The plasma processing reactor is reduced to nanoscale dimensions for tractable MDs using scale reduction of the plasma phase and requesting identical collision numbers in experiments and the simulation box. The present simulations reproduce the role of plasma pressure for the plasma phase growth of nanocatalysts (here, platinum). read less USED (high confidence) A. Beardo et al., “Observation of second sound in a rapidly varying temperature field in Ge,” Science Advances. 2020. link Times cited: 38 Abstract: Wave-like heat propagation is shown to emerge as a consequen… read moreAbstract: Wave-like heat propagation is shown to emerge as a consequence of a rapidly varying temperature field in Ge. Second sound is known as the thermal transport regime where heat is carried by temperature waves. Its experimental observation was previously restricted to a small number of materials, usually in rather narrow temperature windows. We show that it is possible to overcome these limitations by driving the system with a rapidly varying temperature field. High-frequency second sound is demonstrated in bulk natural Ge between 7 K and room temperature by studying the phase lag of the thermal response under a harmonic high-frequency external thermal excitation and addressing the relaxation time and the propagation velocity of the heat waves. These results provide a route to investigate the potential of wave-like heat transport in almost any material, opening opportunities to control heat through its oscillatory nature. read less USED (high confidence) A. Gabourie, S. Suryavanshi, A. Farimani, and E. Pop, “Reduced thermal conductivity of supported and encased monolayer and bilayer MoS2,” 2D Materials. 2020. link Times cited: 28 Abstract: Electrical and thermal properties of atomically thin two-dim… read moreAbstract: Electrical and thermal properties of atomically thin two-dimensional (2D) materials are affected by their environment, e.g. through remote phonon scattering or dielectric screening. However, while it is known that mobility and thermal conductivity (TC) of graphene are reduced on a substrate, these effects are much less explored in 2D semiconductors such as MoS2. Here, we use molecular dynamics to understand TC changes in monolayer (1L) and bilayer (2L) MoS2 by comparing suspended, supported, and encased structures. The TC of monolayer MoS2 is reduced from ∼117 W m−1 K−1 when suspended, to ∼31 W m−1 K−1 when supported by SiO2, at 300 K. Encasing 1L MoS2 in SiO2 further reduces its TC down to ∼22 W m−1 K−1. In contrast, the TC of 2L MoS2 is not as drastically reduced, being >50% higher than 1L both when supported and encased. These effects are due to phonon scattering with remote vibrational modes of the substrate, which are partly screened in 2L MoS2. We also examine the TC of 1L MoS2 across a wide range of temperatures (300 K to 700 K) and defect densities (up to 5 × 1013 cm−2), finding that the substrate reduces the dependence of TC on these factors. Taken together, these are important findings for all applications which will use 2D semiconductors supported or encased by insulators, instead of freely suspended. read less USED (high confidence) N. Wei, Y. Zhang, Y. Chen, and Y. Zhang, “Tuning graphene thermal modulator by rotating,” International Journal of Smart and Nano Materials. 2020. link Times cited: 3 Abstract: ABSTRACT Exploring the thermal transport of graphene is sign… read moreAbstract: ABSTRACT Exploring the thermal transport of graphene is significant for the application of its thermal properties. However, it is still a challenge to regulate the thermal conductivity of graphene interface. We study the interfacial thermal transport mechanism of the bilayer graphene by utilizing the molecular dynamics simulations. During the simulation, the interfacial thermal conductivity is regulated and controlled by lattice matching and tailoring. The lattice mismatched bilayer graphene model, combining the straining and torsion, can increase the interfacial thermal resistance (ITR) about 3.7 times. The variation trend of the ITR is explained by utilizing the vibrational spectra and the overlap factor. Besides, the thermal conductivity is proportional to the overlapping area. Our results show that the tailoring models can regularly control the thermal conductivity in a wide range by twisting the angle between upper and lower layers. These findings can provide a guideline for thermoelectric management and device design of thermal switch. read less USED (high confidence) Y. M. Kuznetsov et al., “Molecular dynamics studies on spark plasma sintering of Ge–Si based thermoelectric material,” AIP Advances. 2020. link Times cited: 0 Abstract: The development of new fabrication technologies for Ge–Si th… read moreAbstract: The development of new fabrication technologies for Ge–Si thermoelectric materials requires a corresponding theoretical description of physical processes lying behind the synthesis. In the present paper, we investigated the interdiffusion of Si and Ge atoms at the Ge/Si interface, which takes place during spark plasma sintering of Ge and Si powders for fabrication of thermoelectric bulk. The calculation was performed using numerical simulation based on the classical molecular dynamics method. The diffusion coefficients of Si in Ge and vice versa were found at sintering temperatures of 900 K–1300 K and an external pressure of 7 MPa. The calculation results were used to analyze the experimental data derived from the measurements of Ge and Si profiles at the interface of thin Ge/Si plates subjected to spark plasma sintering at the temperature of 1160 K (887 °C). The comparison of measured and calculated diffusion profiles has shown good agreement with one another. read less USED (high confidence) V. Choyal and S. I. Kundalwal, “Transversely isotropic elastic properties of multi-walled boron nitride nanotubes under a thermal environment,” Nanotechnology. 2020. link Times cited: 14 Abstract: The temperature-dependent transversely isotropic elastic pro… read moreAbstract: The temperature-dependent transversely isotropic elastic properties of multi-walled boron nitride nanotubes (MWBNNTs) were determined using molecular dynamics simulations with a three-body Tersoff potential force field. These elastic properties were calculated by applying the four different loading conditions on MWBNNTs: uniaxial tension, torsional moment, in-plane biaxial tension and in-plane shear. The effect of chirality, number of layers and aspect ratio (AR) were taken into consideration. The results reveal that the elastic constants of MWBNNTs decrease as their number of layers increase. The elastic moduli of MWBNNTs do not depend on the AR, but are a function of chirality. Furthermore, the effect of temperature on the transversely isotropic elastic constants of MWBNNTs was studied. Higher temperature considerably affects the mechanical properties of MWBNNTs. For instance, the reduction in the values of axial Young’s, longitudinal shear, plane-strain bulk and in-plane shear moduli of MWBNNTs was found to be by approximately 10% due to the increase in temperature. The results reveal that the mechanical properties and failure behavior of MWBNNTs significantly depend on the number of layers, chirality and temperature. The finding of this work can be utilized for engineering MWBNNT-based advanced nanocomposite structures for specific application under thermal environment. read less USED (high confidence) Y.-hua Zhou, A. L. Lloyd, R. Smith, K. Lozovoy, A. Voitsekhovskii, and A. Kokhanenko, “Molecular dynamics simulations of the growth of Ge on Si,” Surface Science. 2020. link Times cited: 9 USED (high confidence) M. N. Esfahani and M. Jabbari, “Influence of the surface stress on the size-dependent elastic behavior of silicon nanowires,” Journal of Applied Physics. 2020. link Times cited: 2 Abstract: A recent study has highlighted an existing controversy among… read moreAbstract: A recent study has highlighted an existing controversy among experimental measurements and theoretical models on the size-dependent elastic behavior of silicon nanowires. Some measurements have depicted a significant size-dependent elastic response, while several studies report a negligible change on the elastic modulus of silicon nanowires through size reduction. To address such contrast, this work studies the surface stress contribution on the size-dependent elastic behavior of silicon nanowires. Molecular dynamics simulations are employed to investigate the influence of size, crystal orientation, boundary condition, and the residual surface stress on the incorporation of the surface stress in the mechanical properties of silicon nanowires. This is accomplished by a primary atomic stress analysis. The implication of the surface stress on the bending behavior is then calculated for silicon nanowires along ⟨ 100 ⟩ and ⟨ 110 ⟩ crystal orientations having { 100 } and { 100 } / { 110 } transverse surfaces, respectively. This study demonstrates, for the first time, the role played by the surface stress to reduce the elastic modulus of ⟨ 110 ⟩ silicon nanowires, which is comparable with experimental measurements on wires with the same size and crystal orientation. The present work enlightens the incorporation of the surface stress on the mechanical behavior of silicon nanowires for the explanation of existing studies and implementation for future investigations. read less USED (high confidence) Y. Hu et al., “Unification of nonequilibrium molecular dynamics and the mode-resolved phonon Boltzmann equation for thermal transport simulations,” Physical Review B. 2020. link Times cited: 35 Abstract: Nano-size confinement induces many intriguing non-Fourier hea… read moreAbstract: Nano-size confinement induces many intriguing non-Fourier heat conduction phenomena, such as nonlinear temperature gradients, temperature jumps near the contacts, and size-dependent thermal conductivity. Over the past decades, these effects have been studied and interpreted by nonequilibrium molecular dynamics (NEMD) and phonon Boltzmann transport equation (BTE) simulations separately, but no theory that unifies these two methods has ever been established. In this work, we unify these methods using a quantitative mode-level comparison and demonstrate that they are equivalent for various thermostats. We show that different thermostats result in different non-Fourier thermal transport characteristics due to the different mode-level phonon excitations inside the thermostats, which explains the different size-dependent thermal conductivities calculated using different reservoirs, even though they give the same bulk thermal conductivity. Specifically, the Langevin thermostat behaves like a thermalizing boundary in phonon BTE and provides mode-level thermal-equilibrium phonon outlets, while the Nose-Hoover chain thermostat and velocity rescaling method behave like biased reservoirs, which provide a spatially uniform heat generation and mode-level nonequilibrium phonon outlets. These findings explain why different experimental measurement methods can yield different size-dependent thermal conductivity. They also indicate that the thermal conductivity of materials can be tuned for various applications by specifically designing thermostats. The unification of NEMD and phonon BTE will largely facilitate the study of thermal transport in complex systems in the future by, e.g., replacing computationally unaffordable first-principles NEMD simulations with computationally less expensive spectral BTE simulations. read less USED (high confidence) H. Tafrishi, S. Sadeghzadeh, F. Molaei, and H. Siavoshi, “Investigating the effects of adding hybrid nanoparticles, graphene and boron nitride nanosheets, to octadecane on its thermal properties,” RSC Advances. 2020. link Times cited: 20 Abstract: Octadecane is an alkane that is used to store thermal energy… read moreAbstract: Octadecane is an alkane that is used to store thermal energy at ambient temperature as a phase change material. A molecular dynamics study was conducted to investigate the effects of adding graphene and a boron nitride nanosheet on the thermal and structural properties of octadecane paraffin. The PCFF force field for paraffin, AIREBO potential for graphene, Tersoff potential for the boron nitride nanosheet, and Lennard-Jones potential for the van der Waals interaction between the nanoparticles and n-alkanes were used. Equilibrium and nonequilibrium molecular dynamics simulations were used to study the nano-enhanced phase change material properties. Results showed that the nanocomposite had a lower density change, more heat capacity (except at 300 K), more thermal conductivity, and a lower diffusion coefficient in comparison with pure paraffin. Additionally, the nanocomposite had a higher melting point, higher phonon density of state and radial distribution function peaks. read less USED (high confidence) M. Rahman, E. Chowdhury, and M. M. Islam, “Understanding mechanical properties and failure mechanism of germanium-silicon alloy at nanoscale,” Journal of Nanoparticle Research. 2020. link Times cited: 13 USED (high confidence) G. D. Förster et al., “A deep learning approach for determining the chiral indices of carbon nanotubes from high-resolution transmission electron microscopy images,” Carbon. 2020. link Times cited: 21 USED (high confidence) Z. Wang, “A molecular dynamics study of the thermal transport in silicon/germanium nanostructures: From cross-plane to in-plane,” Materials today communications. 2020. link Times cited: 8 USED (high confidence) Z. Wei, Z. Yang, M. Liu, H. Wu, Y. Chen, and F. Yang, “Thermal boundary conductance between high thermal conductivity boron arsenide and silicon,” Journal of Applied Physics. 2020. link Times cited: 4 Abstract: Thermal boundary conductance (TBC) is important for heat dis… read moreAbstract: Thermal boundary conductance (TBC) is important for heat dissipation in light-emitting diodes (LEDs). In this study, we predicted the TBC between the high thermal conductivity boron arsenide (BAs) and silicon (Si) by nonequilibrium molecular dynamics (MD) simulations. From the thermal conductivity accumulation function with respect to phonon frequency, the dominant phonon frequencies for heat conduction in BAs are extremely different from those in Si. However, our nonequilibrium MD simulations indicated that the TBC of the BAs/Si interface was still high compared to most other interfaces, even though there was a major frequency mismatch in the thermal conductivity accumulation function between BAs and Si. The primary reason for the high TBC is the overlap of phonon density of states between BAs and Si in the frequency range of 5–8 THz. The range of predicted TBC of the BAs/Si interface was between 200 and 300 MW/m2 K in the temperature range of 300–700 K, and the values of the TBC were not sensitive to the temperature. We also found that the TBCs in Si/BAs and Si/Ge interfaces were close to each other considering the simulation uncertainty. This work indicates BAs as an excellent material for heat dissipation across the interfaces. read less USED (high confidence) N. Li, “Diffusion behaviors of energy and momentum for 1D single-walled carbon nanotubes,” Journal of Physics D: Applied Physics. 2020. link Times cited: 0 Abstract: The single-walled carbon nanotube (CNT) is a quasi-1D materi… read moreAbstract: The single-walled carbon nanotube (CNT) is a quasi-1D material with ultra high thermal conductivity. It is known that the heat conduction is closely related with the energy diffusion and the information of heat conduction can be obtained by examining the energy diffusion behavior. The correlated energy distribution CE(i,t) calculated in diffusion process gives the whole spatial distribution of energy spreading at every correlation time which is much better than the traditional heat conduction method where only a number of thermal conductivity is provided. In previous study the anomalous super-diffusion of energy has been reported for CNT via a non-equilibrium diffusion method. Here we apply the more sophisticate equilibrium diffusion method to investigate the energy diffusion behavior in CNT with much longer length up to m with much higher accuracy. At room temperature, the super-diffusion of energy described by the mean square displacement of energy is found to be not far away from ballistic diffusion which is consistent with the experimentally measured ultra high thermal conductivity for CNT. With the equilibrium diffusion method, the diffusion of momentum has also been performed for CNT and ballistic diffusion is found which can be viewed as a support for anomalous super energy diffusion. The momentum diffusion can also give accurate information of sound velocity which is determined as m s−1 at room temperature. In particular, the very weak temperature coefficient of sound velocity can be obtained as m (. The normalized temperature coefficient of sound velocity can be related with the normalized temperature coefficient of Raman frequency shifts experimentally measured as . The obtained value via the momentum diffusion method is consistent with the experimental measurements. read less USED (high confidence) K. Lin, D. Li, S. Song, Z. Ye, W. Jiang, and Q. Qin, “Enhanced mechanical properties of 4H-SiC by epitaxial carbon films obtained from bilayer graphene,” Nanotechnology. 2020. link Times cited: 11 Abstract: Graphene exhibits excellent mechanical properties under atom… read moreAbstract: Graphene exhibits excellent mechanical properties under atomically thin thickness, which made it very suitable for nanoelectromechanical systems that had high requirements for the thickness of coatings. The epitaxial bilayer graphene on the 4H-SiC (0001) surface presents high stiffness and hardness comparable to diamond. However, due to structural transition occurring at the nanoscale, it is difficult to elucidate reinforcement mechanisms using experimental methods. Here, we applied molecular dynamics simulations to study nanoindentation of epitaxial carbon-film-covered 4H-SiC (0001) surfaces. Because a weak interaction potential existed between graphene layers at indentation depth (h < 0.8 Å) that far smaller than interlayer distance, the epitaxial bilayer graphene does not allow the 4H-SiC to exceed its intrinsic stiffness. When the indentation depth h ≥6.45 Å, the sp3 hybridized bonds formed on the interlayer of graphene, which leads to fewer amorphous atoms in the sample of 4H-SiC and exhibits stronger stiffness, in comparison with bare 4H-SiC. This strongly suggests the existence of sp3 bonds contributing to the surface strengthening. Meanwhile, we found that the comprehensive mechanical properties of nanocomposites with hydrogenated diamond-like films were superior to those of nanocomposites with other carbon films at high temperatures. read less USED (high confidence) Z. Yu, Y. Feng, D. Feng, and X. Zhang, “Thermal conductance bottleneck of a three dimensional graphene-CNT hybrid structure: a molecular dynamics simulation.,” Physical chemistry chemical physics : PCCP. 2019. link Times cited: 9 Abstract: Three dimensional (3D) graphene-CNT hybrid structures (GCNTs… read moreAbstract: Three dimensional (3D) graphene-CNT hybrid structures (GCNTs) are promising materials for applications including capacitors and gas storage and separation devices, however until now their thermal conductance mechanism has scarcely been studied. These hybrid nanomaterials are particularly suitable as next-generation thermal interface materials due to the excellent thermal properties of carbon nanotubes and single atomic layer graphene. In this paper, the out-of-plane thermal conductivities of GCNTs, graphene nanomesh (GNM), and graphene sheets are investigated using molecular dynamics (MD) simulations which apply the Green-Kubo method. Distinct from GNMs and graphene sheets, the GCNTs exhibit a relatively high out-of-plane thermal conductivity, stemming from the CNTs' ability to accelerate the energy flow. However, the GCNT out-of-plane thermal conductivity is still far lower than that of pristine graphene due to extreme phonon localizations, which are concentrated on the graphene-CNT junction regions as evidenced by the participation ratio, phonon vibrational density of states, and overlap energy. This study provides microscopic insight into the GCNT heat transfer mechanism and offers design guidelines for application of GCNTs in thermal management devices. read less USED (high confidence) B. Wen et al., “Continuous strengthening in nanotwinned diamond,” npj Computational Materials. 2019. link Times cited: 31 USED (high confidence) T. Jiang et al., “Mechanical properties of hydrogenated amorphous silicon (a-Si:H) particles,” Journal of Applied Physics. 2019. link Times cited: 6 Abstract: A nanoindenter was used to compress individual particles of … read moreAbstract: A nanoindenter was used to compress individual particles of hydrogenated amorphous silicon (a-Si:H) ranging in diameter from 290 nm to 780 nm. The colloidal synthesis used to produce the particles enables the hydrogen content to be manipulated over a wide range, from about 5 at. % to 50 at. %, making these a-Si:H particles promising for applications in lithium ion batteries, hydrogen storage, and optical metamaterials. Force-displacement curves generated using a tungsten probe flattened with focused ion beam exhibited elastic and then plastic deformations, followed by fracture and crushing of the particles. For particles with 5% and 50% H, Young's moduli, yield strengths, and compressive strengths were 73.5(±19.5) GPa, 5.8 GPa, and 3.2(±0.1)–9.3(±0.6) GPa and 31.2(±9.0) GPa, 2.5 GPa, and 1.8 (±0.3)–5.3(±0.8) GPa, respectively. Particles with more hydrogen were significantly more compliant and weaker. This is consistent with atomistically detailed molecular dynamics simulations, which revealed compression forms of an interphase of H atom clusters that weakens the material.A nanoindenter was used to compress individual particles of hydrogenated amorphous silicon (a-Si:H) ranging in diameter from 290 nm to 780 nm. The colloidal synthesis used to produce the particles enables the hydrogen content to be manipulated over a wide range, from about 5 at. % to 50 at. %, making these a-Si:H particles promising for applications in lithium ion batteries, hydrogen storage, and optical metamaterials. Force-displacement curves generated using a tungsten probe flattened with focused ion beam exhibited elastic and then plastic deformations, followed by fracture and crushing of the particles. For particles with 5% and 50% H, Young's moduli, yield strengths, and compressive strengths were 73.5(±19.5) GPa, 5.8 GPa, and 3.2(±0.1)–9.3(±0.6) GPa and 31.2(±9.0) GPa, 2.5 GPa, and 1.8 (±0.3)–5.3(±0.8) GPa, respectively. Particles with more hydrogen were significantly more compliant and weaker. This is consistent with atomistically detailed molecular dynamics simulations, which revealed compression ... read less USED (high confidence) S. Neogi and D. Donadio, “Anisotropic In-Plane Phonon Transport in Silicon Membranes Guided by Nanoscale Surface Resonators,” Physical Review Applied. 2019. link Times cited: 12 Abstract: Anisotropic phonon transport along different lattice directi… read moreAbstract: Anisotropic phonon transport along different lattice directions of two-dimensional (2D) materials has been observed, however, the effect decreases with increasing the thickness beyond a few atomic layers. Here we establish a novel mechanism to induce anisotropic phonon transport in quasi-2D materials with isotropic symmetry. The phonon propagation is guided by resonance hybridization with surface nanostructures. We demonstrate that the thermal conductivity of 3 nm-thick silicon membrane with surface nanofins is greater by $\sim50\%$ parallel to the fins than that perpendicular to the fins. read less USED (high confidence) M. A. Z. Mamun, M. Hasan, N. Mustakim, and S. Subrina, “A Molecular Dynamics Study of Thermal conductivity in Monolayer GaN Nanoribbon,” TENCON 2019 - 2019 IEEE Region 10 Conference (TENCON). 2019. link Times cited: 3 Abstract: Nowadays 2D materials like Graphene, Silicene, Stanene and s… read moreAbstract: Nowadays 2D materials like Graphene, Silicene, Stanene and single layer transition metal dichalcogenides (e.g., MoS2, WSe2,MoTe2,), are drawing significant attention in the research arena due to their superior electrical, thermal and opto-electronic properties to their bulk counterparts. In this study, we have investigated the thermal transport properties of single layer zigzag gallium nitride (GaN) nanoribbon using equilibrium molecular dynamics simulations. The calculated room temperature thermal conductivity of $20\ \mathbf{nm} \times 2\ \mathbf{nm}$ single layer GaN nanoribbon using tersoff inter-atomic potential is 2.04 W/m-K. The temperature and sample size dependence of thermal conductivity have also been studied. For a particular sample size, the thermal conductivity of GaN nanoribbon decreases with increasing temperatures. On the other hand, an opposite pattern is observed for length variation i.e. thermal conductivity increases with the increase in ribbon length keeping the temperature constant. Our study further includes the investigation of the thermal transport of defected GaN nanoribbon. The thermal conductivity of defected GaN sample has been estimated by incorporating defects of different concentration [1% to 5%] for different operating temperatures [100K to 500K]. Our study shows that the thermal conductivity reduces drastically with the increase of defect concentration. We have also calculated phonon density of states (PDOS) for pristine and defected GaN nanoribbon to provide better understanding of these phenomena. Our study would be helpful for further investigation of thermal transport in single layer GaN based devices. read less USED (high confidence) S. Hu et al., “Screw dislocation induced phonon transport suppression in SiGe superlattices,” Physical Review B. 2019. link Times cited: 18 Abstract: Screw dislocations are known to impede the thermal transport… read moreAbstract: Screw dislocations are known to impede the thermal transport of homogeneous nanowires by reducing the phonon relaxation time without affecting the phonon group velocity. By using molecular dynamics simulations in this study, we show that the impact of screw dislocation on the thermal conductivity of the SiGe superlattice nanowires depends on the period length. The analysis of phonon transmission spectra and phonon mean free paths indicate that strong phonon-screw dislocation scatterings occur for phonons in the frequency range of 3-8 THz. The screw dislocations change the phonon scattering mechanisms, which is the main cause of the thermal conductivity reduction. Contrary to the case of homogeneous nanowires, a sizable decrease in the phonon group velocity is found in superlattices with screw dislocations. This phenomenon is attributed to the larger number of Si-Ge bonds in the vicinity of the interface due to the slipping of the atomic planes. In contrast to the decreased thermal conductivity, the phonon propagation in the interface region of the nanowires is enhanced by screw dislocations. Our findings provide critical insights into the understanding of dislocation-heat transfer relationship in materials, especially in heterostructures where interfaces are vital for thermal transport. read less USED (high confidence) A. Islam et al., “Anomalous temperature dependent thermal conductivity of two-dimensional silicon carbide,” Nanotechnology. 2019. link Times cited: 46 Abstract: Recently, two-dimensional silicon carbide (2D-SiC) has attra… read moreAbstract: Recently, two-dimensional silicon carbide (2D-SiC) has attracted considerable interest due to its exotic electronic and optical properties. Here, we explore the thermal properties of 2D-SiC using reverse non-equilibrium molecular dynamics simulation. At room temperature, a thermal conductivity of ∼313 W mK−1 is obtained for 2D-SiC which is one order higher than that of silicene. Above room temperature, the thermal conductivity deviates the normal 1/T law and shows an anomalous slowly decreasing behavior. To elucidate the variation of thermal conductivity, the phonon modes at different length and temperature are quantified using Fourier transform of the velocity auto-correlation of atoms. The calculated phonon density of states at high temperature shows a shrinking and softening of the peaks, which induces the anomaly in the thermal conductivity. On the other hand, quantum corrections are applied to avoid the freezing effects of phonon modes on the thermal conductivity at low temperature. In addition, the effect of potential on the thermal conductivity calculation is also studied by employing original and optimized Tersoff potentials. These findings provide a means for better understating as well as designing the efficient thermal management of 2D-SiC based electronics and optoelectronics in near future. read less USED (high confidence) N. Kamanina, S. Likhomanova, and Y. R. Zagidullina, “Properties of Optical Ceramics CO1 and CO2 upon Modification of Their Surface by Carbon Nanotubes,” Technical Physics Letters. 2019. link Times cited: 0 USED (high confidence) T. Yu, Z. Wang, X.-huan Guo, P. Xu, J. Zhao, and L. Chen, “Effect of ultrasonic vibration on polishing monocrystalline silicon: surface quality and material removal rate,” The International Journal of Advanced Manufacturing Technology. 2019. link Times cited: 11 USED (high confidence) B. Lee and S. Park, “Applying Tersoff-potential and bond-softening models in a molecular dynamics study of femtosecond laser processing,” Journal of Applied Physics. 2019. link Times cited: 3 Abstract: In the molecular dynamics study of short-pulsed laser proces… read moreAbstract: In the molecular dynamics study of short-pulsed laser processing of semiconductors, potential models capable of describing the atomistic behavior during high electronic excitations is the most critical issue at the current stage. This study of the molecular dynamics adopts the Tersoff-potential model to analyze the ultrafast laser processing of silicon. The model was modified to include electronic excitation effects by reducing the attraction of the antibonding state by half. It offers an excellent description of the experimental behavior during nonthermal melting. Subpicosecond melting is achieved above certain threshold levels of superheating and carrier density as required in experiments. Energy conservation is demonstrated with a bandgap energy of the order obtained in experiments. The modification of the potential mimics an absorption of bandgap energy and a subsequent lattice heating on a time scale within 0.3 ps. The melting kinetics establishes a correlation between nonthermal melting and thermal bulk melting. For superheating of less than two, the electronic melting of bond softening proceeds via homogeneous nucleation. The associated thermal theory, corrected with a limit on the nucleus radius to bond length, is still valid for the higher superheating regime. The original Tersoff model shows that this superheating by a factor of two is isothermal for spallation—the lowest-energy ablative mechanism. Its proximity to the evaporating point suggests the role of thermal boiling during spallation.In the molecular dynamics study of short-pulsed laser processing of semiconductors, potential models capable of describing the atomistic behavior during high electronic excitations is the most critical issue at the current stage. This study of the molecular dynamics adopts the Tersoff-potential model to analyze the ultrafast laser processing of silicon. The model was modified to include electronic excitation effects by reducing the attraction of the antibonding state by half. It offers an excellent description of the experimental behavior during nonthermal melting. Subpicosecond melting is achieved above certain threshold levels of superheating and carrier density as required in experiments. Energy conservation is demonstrated with a bandgap energy of the order obtained in experiments. The modification of the potential mimics an absorption of bandgap energy and a subsequent lattice heating on a time scale within 0.3 ps. The melting kinetics establishes a correlation between nonthermal melting and thermal ... read less USED (high confidence) L. Xie, T. Wang, C. He, Z. Sun, and Q. Peng, “Molecular Dynamics Simulation on Mechanical and Piezoelectric Properties of Boron Nitride Honeycomb Structures,” Nanomaterials. 2019. link Times cited: 8 Abstract: Boron nitride honeycomb structure is a new three-dimensional… read moreAbstract: Boron nitride honeycomb structure is a new three-dimensional material similar to carbon honeycomb, which has attracted a great deal of attention due to its special structure and properties. In this paper, the tensile mechanical properties of boron nitride honeycomb structures in the zigzag, armchair and axial directions are studied at room temperature by using molecular dynamics simulations. Effects of temperature and strain rate on mechanical properties are also discussed. According to the observed tensile mechanical properties, the piezoelectric effect in the zigzag direction was analyzed for boron nitride honeycomb structures. The obtained results showed that the failure strains of boron nitride honeycomb structures under tensile loading were up to 0.83, 0.78 and 0.55 in the armchair, zigzag and axial directions, respectively, at room temperature. These findings indicated that boron nitride honeycomb structures have excellent ductility at room temperature. Moreover, temperature had a significant effect on the mechanical and tensile mechanical properties of boron nitride honeycomb structures, which can be improved by lowering the temperature within a certain range. In addition, strain rate affected the maximum tensile strength and failure strain of boron nitride honeycomb structures. Furthermore, due to the unique polarization of boron nitride honeycomb structures, they possessed an excellent piezoelectric effect. The piezoelectric coefficient e obtained from molecular dynamics was 0.702 C/m2, which was lower than that of the monolayer boron nitride honeycomb structures, e=0.79 C/m2. Such excellent piezoelectric properties and failure strain detected in boron nitride honeycomb structures suggest a broad prospect for the application of these new materials in novel nanodevices with ultrahigh tensile mechanical properties and ultralight-weight materials. read less USED (high confidence) R. V. Meidanshahi, S. Bowden, and S. Goodnick, “Electronic structure and localized states in amorphous Si and hydrogenated amorphous Si.,” Physical chemistry chemical physics : PCCP. 2019. link Times cited: 10 Abstract: Hydrogen incorporation in the fabrication of amorphous Si (a… read moreAbstract: Hydrogen incorporation in the fabrication of amorphous Si (a-Si) plays an important role in improving its electronic and optical properties. An important question is how H interacts with the a-Si atomic network, and consequently affects the electronic properties of a-Si. The common assumption is that the role of H is to passivate the dangling bonds (DBs) of the a-Si structure, which subsequently leads to a reduction in the density of midgap sates and localized states within the mobility gap. In the present work, we first employ a combined molecular dynamic (MD) and density functional theory (DFT) method to create stable configurations of a-Si:H, and then analyze the atomic and electronic structure to investigate which structural defects interact with H, and how the electronic structure changes with H addition. We show that in contrast with the simple dangling bond picture, atoms bonded by highly strained bonds (SBs) are significantly affected by the addition of H, in terms of the lowest energy configuration, with similar if not greater importance to that of dangling bonds in passivating a-Si. We find that H atoms decrease the density of mid-gap states of a-Si by bonding to the Si atoms with SBs. Our results also indicate that Si atoms with SBs creates highly localized orbitals in the mobility gap of a-Si and a-Si:H, and the bonding of H atoms to them can significantly decrease the degree of orbital localization. The results demonstrate the beneficial effects of hydrogenation of a-Si in terms of reducing the overall strain energy of the a-Si network, with commensurate reduction of mid-gap states and orbital localization. read less USED (high confidence) Z. Li et al., “Influence of thermostatting on nonequilibrium molecular dynamics simulations of heat conduction in solids.,” The Journal of chemical physics. 2019. link Times cited: 104 Abstract: Nonequilibrium molecular dynamics (NEMD) has been extensivel… read moreAbstract: Nonequilibrium molecular dynamics (NEMD) has been extensively used to study thermal transport at various length scales in many materials. In this method, two local thermostats at different temperatures are used to generate a nonequilibrium steady state with a constant heat flux. Conventionally, the thermal conductivity of a finite system is calculated as the ratio between the heat flux and the temperature gradient extracted from the linear part of the temperature profile away from the local thermostats. Here, we show that, with a proper choice of the thermostat, the nonlinear part of the temperature profile should actually not be excluded in thermal transport calculations. We compare NEMD results against those from the atomistic Green's function method in the ballistic regime and those from the homogeneous nonequilibrium molecular dynamics method in the ballistic-to-diffusive regime. These comparisons suggest that in all the transport regimes, one should directly calculate the thermal conductance from the temperature difference between the heat source and sink and, if needed, convert it into the thermal conductivity by multiplying it with the system length. Furthermore, we find that the Langevin thermostat outperforms the Nosé-Hoover (chain) thermostat in NEMD simulations because of its stochastic and local nature. We show that this is particularly important for studying asymmetric carbon-based nanostructures, for which the Nosé-Hoover thermostat can produce artifacts leading to unphysical thermal rectification. read less USED (high confidence) Y. H. Lin and T.-C. Chen, “Nanoscale Mechanical and Mechanically-Induced Electrical Properties of Silicon Nanowires,” Crystals. 2019. link Times cited: 1 Abstract: Molecular dynamics (MD) simulation was employed to examine t… read moreAbstract: Molecular dynamics (MD) simulation was employed to examine the deformation and phase transformation of mono-crystalline Si nanowire (SiNW) subjected to tensile stress. The techniques of coordination number (CN) and centro-symmetry parameter (CSP) were used to monitor and elucidate the detailed mechanisms of the phase transformation throughout the loading process in which the evolution of structural phase change and the dislocation pattern were identified. Therefore, the relationship between phase transformation and dislocation pattern was established and illustrated. In addition, the electrical resistance and conductivity of SiNW were evaluated by using the concept of virtual electric source during loading and unloading similar to in situ electrical measurements. The effects of temperature on phase transformation of mono-crystalline SiNWs for three different crystallographically oriented surfaces were investigated and discussed. Simulation results show that, with the increase of applied stress, the dislocations are initiated first and then the phase transformation such that the total energy of the system tends to approach a minimum level. Moreover, the electrical resistance of (001)- rather than (011)- and (111)-oriented SiNWs was changed before failure. As the stress level of the (001) SiNW reaches 24 GPa, a significant amount of metallic Si-II and amorphous phases is produced from the semiconducting Si-I phase and leads to a pronounced decrease of electrical resistance. It was also found that as the temperature of the system is higher than 500 K, the electrical resistance of (001) SiNW is significantly reduced through the process of axial elongation. read less USED (high confidence) S. Norouzi and M. M. S. Fakhrabadi, “Nanomechanical properties of single- and double-layer graphene spirals: a molecular dynamics simulation,” Applied Physics A. 2019. link Times cited: 14 USED (high confidence) T. Yu, Z. Wang, X.-huan Guo, P. Xu, J. Zhao, and L. Chen, “Effect of ultrasonic vibration on polishing monocrystalline silicon: surface quality and material removal rate,” The International Journal of Advanced Manufacturing Technology. 2019. link Times cited: 0 USED (high confidence) S. Norouzi and M. M. S. Fakhrabadi, “Nanomechanical properties of single- and double-layer graphene spirals: a molecular dynamics simulation,” Applied Physics A. 2019. link Times cited: 0 USED (high confidence) L. Isaeva, G. Barbalinardo, D. Donadio, and S. Baroni, “Modeling heat transport in crystals and glasses from a unified lattice-dynamical approach,” Nature Communications. 2019. link Times cited: 118 USED (high confidence) K. Gordiz, M. Muraleedharan, and A. Henry, “Interface conductance modal analysis of a crystalline Si-amorphous SiO2interface,” Journal of Applied Physics. 2019. link Times cited: 9 Abstract: We studied the modal contributions to heat conduction across… read moreAbstract: We studied the modal contributions to heat conduction across an interface between crystalline Si and amorphous SiO2, using the interface conductance modal analysis (ICMA) method. Our results show that >70% of the thermal interface conductance (TIC) arises from the extended modes. Using ICMA, we could also determine the contribution of interfacial modes to the TIC. Interestingly, we observed that although the number of these modes is 15%). Such an observation shows the non-negligible role of localized modes in facilitating heat conduction across systems with interfaces between dissimilar materials, specifically in a system that is straightforward to fabricate and study experimentally. Our observations suggest that neglecting the contribution of localized modes would be an oversimplification of the actual mechanisms at play. Determining the individual mode contributions is therefore of vital importance, since these values are directly utilized in predicting the temperature dependent TIC, which is important to silicon on insulator technologies with a myriad of applications within microelectronics and optoelectronics.We studied the modal contributions to heat conduction across an interface between crystalline Si and amorphous SiO2, using the interface conductance modal analysis (ICMA) method. Our results show that >70% of the thermal interface conductance (TIC) arises from the extended modes. Using ICMA, we could also determine the contribution of interfacial modes to the TIC. Interestingly, we observed that although the number of these modes is 15%). Such an observation shows the non-negligible role of localized modes in facilitating heat conduction across systems with interfaces between dissimilar materials, specifically in a system that is straightforward to fabricate and study experimentally. Our observations suggest that neglecting the contribution of localized modes would be an oversimplification of the actual mechanisms at play. Determining the individual mode contributions is therefore of vital importance, since these values are directly... read less USED (high confidence) A. Galashev and K. Ivanichkina, “Computer Modeling of Lithium Intercalation and Deintercalation in a Silicene Channel,” Russian Journal of Physical Chemistry A. 2019. link Times cited: 4 USED (high confidence) M. N. Esfahani, “Surface stress effects on the mechanical properties of silicon nanowires: A molecular dynamics simulation,” Journal of Applied Physics. 2019. link Times cited: 13 Abstract: A primary challenge to use silicon nanowires as a truly pote… read moreAbstract: A primary challenge to use silicon nanowires as a truly potential building block in nanoscale devices is the implementation of scale effects into operational performance. Therefore, surface stress effects—as a direct result of size reduction—on transport properties became a major field of study. Previous computational simulations have focused so far on geometrical parameters with symmetrical cross sections, while silicon nanowires with nonsymmetrical cross sections are the major result of top-down fabrication techniques. A recent study has drawn a new aspect on the role played by the surface stress with a torsional profile on silicon nanowires to address the existing controversy from experimental and computational studies. Motivated by its success, the implications of this surface stress profile on the tensile properties of silicon nanowires are studied through molecular dynamics simulations. Deformation associated with the surface stress is computed for different length-to-thickness and width-to-thickness ratios. Then, tensile properties are investigated for a constant strain rate. Atomic calculations are carried out on silicon nanowires along the ⟨ 100 ⟩ crystal orientation for fixed-fixed and fixed-free boundary conditions. A combination of compressive uniaxial surface stress and torsional surface stress contributes to the mechanical behavior of silicon nanowires. A transition on elastic properties is obtained through changing the cross section from square to rectangular configuration. Further to addressing the controversy regarding the contribution of the surface stress on the mechanical properties, limits associated with available analytical approaches are highlighted for silicon nanowires.A primary challenge to use silicon nanowires as a truly potential building block in nanoscale devices is the implementation of scale effects into operational performance. Therefore, surface stress effects—as a direct result of size reduction—on transport properties became a major field of study. Previous computational simulations have focused so far on geometrical parameters with symmetrical cross sections, while silicon nanowires with nonsymmetrical cross sections are the major result of top-down fabrication techniques. A recent study has drawn a new aspect on the role played by the surface stress with a torsional profile on silicon nanowires to address the existing controversy from experimental and computational studies. Motivated by its success, the implications of this surface stress profile on the tensile properties of silicon nanowires are studied through molecular dynamics simulations. Deformation associated with the surface stress is computed for different length-to-thickness and width-to-thicknes... read less USED (high confidence) Y. Y. Zhang, M. Tang, Y. Cai, J. E, and S. Luo, “Deducing density and strength of nanocrystalline Ta and diamond under extreme conditions from X-ray diffraction.,” Journal of synchrotron radiation. 2019. link Times cited: 3 Abstract: In situ X-ray diffraction with advanced X-ray sources offers… read moreAbstract: In situ X-ray diffraction with advanced X-ray sources offers unique opportunities for investigating materials properties under extreme conditions such as shock-wave loading. Here, Singh's theory for deducing high-pressure density and strength from two-dimensional (2D) diffraction patterns is rigorously examined with large-scale molecular dynamics simulations of isothermal compression and shock-wave compression. Two representative solids are explored: nanocrystalline Ta and diamond. Analysis of simulated 2D X-ray diffraction patterns is compared against direct molecular dynamics simulation results. Singh's method is highly accurate for density measurement (within 1%) and reasonable for strength measurement (within 10%), and can be used for such measurements on nanocrystalline and polycrystalline solids under extreme conditions (e.g. in the megabar regime). read less USED (high confidence) X. Liu, H. Zhou, G. Zhang, and Y.-W. Zhang, “The effects of curvature on the thermal conduction of bent silicon nanowire,” Journal of Applied Physics. 2019. link Times cited: 7 Abstract: Curvature induced by mechanical deformation in nanostructure… read moreAbstract: Curvature induced by mechanical deformation in nanostructures has been found to significantly affect their stability and reliability during applications. In this work, we investigated the effects of curvature induced by mechanical bending on the thermal properties of silicon nanowire (SiNW) by using molecular dynamics simulations. By examining the relationship between the curved geometry and local temperature/heat flux distribution, we found that there is no temperature gradient/heat flux along the radial direction of the bent SiNW, and the local heat current density along the circumferential direction varies with the radius of curvature. Interestingly, a ∼10% reduction in the thermal conductivity is found in the bent SiNW due to the depression of long-wavelength phonons caused by its inhomogeneous deformation. The present work demonstrates that the curvature induced by mechanical bending can be used to modulate the thermal conductivity of SiNWs.Curvature induced by mechanical deformation in nanostructures has been found to significantly affect their stability and reliability during applications. In this work, we investigated the effects of curvature induced by mechanical bending on the thermal properties of silicon nanowire (SiNW) by using molecular dynamics simulations. By examining the relationship between the curved geometry and local temperature/heat flux distribution, we found that there is no temperature gradient/heat flux along the radial direction of the bent SiNW, and the local heat current density along the circumferential direction varies with the radius of curvature. Interestingly, a ∼10% reduction in the thermal conductivity is found in the bent SiNW due to the depression of long-wavelength phonons caused by its inhomogeneous deformation. The present work demonstrates that the curvature induced by mechanical bending can be used to modulate the thermal conductivity of SiNWs. read less USED (high confidence) F. Liu et al., “Enhancement of thermal energy transport across the graphene/h-BN heterostructure interface.,” Nanoscale. 2019. link Times cited: 17 Abstract: Enhancing thermal energy transport is critical for the appli… read moreAbstract: Enhancing thermal energy transport is critical for the applications of 2-dimensional materials. Here, we explored the methods of enhancing the interfacial thermal energy transport across the graphene (GR)/hexagonal boron nitride (h-BN) heterostructure interface, and revealed the enhancement mechanisms of interfacial thermal energy transport by applying non-equilibrium molecular dynamics (NEMD) simulations. The computational results indicated that both doping and interface topography optimization could effectively improve the interfacial thermal conductance (ITC) of the GR/h-BN heterostructure. In particular, the enhancement of the zigzag interface topography led to a much better result than the other methods. Doping and interface topography optimization increased the overlap of the phonon density of states (PDOS). Temperature had a negligible effect on the ITC of the GR/h-BN heterostructure when the temperature exceeded 600 K. read less USED (high confidence) Y.-peng Liu, B.-Y. Ning, L.-C. Gong, T. Weng, and X. Ning, “A New Model to Predict Optimum Conditions for Growth of 2D Materials on a Substrate,” Nanomaterials. 2019. link Times cited: 7 Abstract: Deposition of atoms or molecules on a solid surface is a fle… read moreAbstract: Deposition of atoms or molecules on a solid surface is a flexible way to prepare various novel two-dimensional materials if the growth conditions, such as suitable surface and optimum temperature, could be predicted theoretically. However, prediction challenges modern theory of material design because the free energy criteria can hardly be applied to this issue due to the long-standing problem in statistical physics of the calculations of the free energy. Herein, we present an approach to the problem by the demonstrations of graphene and γ-graphyne on the surface of copper crystal, as well as silicene on a silver substrate. Compared with previous state-of-the-art algorithms for calculations of the free energy, our approach is capable of achieving computational precisions at least 10-times higher, which was confirmed by molecular dynamics simulations, and working at least four orders of magnitude faster, which enables us to obtain free energy based on ab initio calculations of the interaction potential instead of the empirical one. The approach was applied to predict the optimum conditions for silicene growth on different surfaces of solid silver based on density functional theory, and the results are in good agreement with previous experimental observations. read less USED (high confidence) J. Zhang, “Vibrations of van der Waals heterostructures: A study by molecular dynamics and continuum mechanics,” Journal of Applied Physics. 2019. link Times cited: 5 Abstract: The vibration behaviors of van der Waals (vdW) heterostructu… read moreAbstract: The vibration behaviors of van der Waals (vdW) heterostructures are studied based on molecular dynamics (MD) simulations and continuum mechanics modelling in this paper. Graphene/hexagonal boron nitride and graphene/silicene systems are considered as two typical examples of heterostructures studied here. Our MD results show that the resonance frequency of vdW heterostructures grows as their layer number increases and tends to be saturated when the layer number is relatively large. These findings deviate from results of the conventional composite beam (CB) model of vdW heterostructures. By abandoning the assumptions in the CB model, we propose a novel multiple beam (MB) model giving a result that agrees well with MD results. We find from the MB model that compared to other factors the interlayer shearing effect plays the key role in determining the resonance behaviors of vdW heterostructures. Considering this fact, we further simplify the MB model to a much simpler form which gives a simple but precise description of the vibration behaviors of vdW heterostructures. This simplified MB model suggests that the resonance frequency of vdW heterostructures can be optimized by changing their total mass, the sum of bending stiffness of their component layers, and the sum of interlayer shear modulus of their vdW layers.The vibration behaviors of van der Waals (vdW) heterostructures are studied based on molecular dynamics (MD) simulations and continuum mechanics modelling in this paper. Graphene/hexagonal boron nitride and graphene/silicene systems are considered as two typical examples of heterostructures studied here. Our MD results show that the resonance frequency of vdW heterostructures grows as their layer number increases and tends to be saturated when the layer number is relatively large. These findings deviate from results of the conventional composite beam (CB) model of vdW heterostructures. By abandoning the assumptions in the CB model, we propose a novel multiple beam (MB) model giving a result that agrees well with MD results. We find from the MB model that compared to other factors the interlayer shearing effect plays the key role in determining the resonance behaviors of vdW heterostructures. Considering this fact, we further simplify the MB model to a much simpler form which gives a simple but precise des... read less USED (high confidence) Z. Ling, X. Tao, Y. Zhang, and X. Chen, “Thermal Conductivity of Two Types of 2D Carbon Allotropes: a Molecular Dynamics Study,” Nanoscale Research Letters. 2019. link Times cited: 20 USED (high confidence) T. Feng, Y. Zhong, J. Shi, and X. Ruan, “Unexpected high inelastic phonon transport across solid-solid interface: Modal nonequilibrium molecular dynamics simulations and Landauer analysis,” Physical Review B. 2019. link Times cited: 57 Abstract: As a crucial part in thermal management, interfacial thermal… read moreAbstract: As a crucial part in thermal management, interfacial thermal transport is still not well understood. In this paper, we employ the newly developed modal nonequilibrium molecular dynamics to study the Si/Ge interfacial thermal transport and clarify several long-standing issues. We find that the few atomic layers at the interface are dominated by interfacial modes, which act as a bridge that connects the bulk Si and Ge modes. Such bridging effect boosts the inelastic transport to contribute more than 50% to the total thermal conductance even at room temperature. The apparent inelastic transport can even allow effective four-phonon processes across the interface when the mass difference between the two materials is large. Surprisingly, optical phonon modes can contribute equal or more thermal conductance than the acoustic modes due to the bridging effect. From the modal temperature analysis, we find that the phonon modes are in strong thermal nonequilibrium near the interface, which impedes the thermal transport. The widely used Landauer approach that does not consider the phonon nonequilibrium can lead to inaccurate results. We have modified the Landauer approach to include the inelastic transmission and modal thermal nonequilibrium. The approach is used to analyze our modal NEMD results, and the mode-dependent phonon transmission function that includes inelastic scattering has been derived. Our results unveil the fundamental thermal transport physics across interfaces and will shed light on the future engineering in thermal management. It provides a method of calculating modal phonon transmission functions that includes inelastic scattering from molecular dynamics. read less USED (high confidence) M. Khalkhali, F. Khoeini, and A. Rajabpour, “Thermal transport in silicene nanotubes: Effects of length, grain boundary and strain,” International Journal of Heat and Mass Transfer. 2019. link Times cited: 20 USED (high confidence) H. Pen, J. Guo, Z. Cao, X. Wang, and Z. Wang, “Finite element simulation of the micromachining of nanosized-silicon-carbide-particle reinforced composite materials based on the cohesive zone model,” Nanotechnology and Precision Engineering. 2018. link Times cited: 9 USED (high confidence) M. Wang, F. Zhu, Y. Xu, and S. Liu, “Investigation of Nanocutting Characteristics of Off-Axis 4H-SiC Substrate by Molecular Dynamics,” Applied Sciences. 2018. link Times cited: 9 Abstract: Silicon carbide (SiC), especially 4H-SiC, is an ideal semico… read moreAbstract: Silicon carbide (SiC), especially 4H-SiC, is an ideal semiconductor in power electronics due to its outstanding electrical and thermal properties. It has high hardness and brittleness, which makes it difficult to machine. To understand the nanomachining characteristics of off-axis 4H-SiC and provide suggestions on 4H-SiC substrate thinning, the nanocutting process of 4 ∘ off-axis 4H-SiC was simulated by molecular dynamics. The results showed that the stacking fault induced by cutting propagates in the basal plane, and propagates deep into the SiC workpiece when the angle between the cutting direction and the c-axis is smaller than 90 ∘ . Bond reconstruction is found near the slip plane. The cutting depth is also a key parameter in nanocutting. With smaller cutting depth, machining is more like scratching than cutting. With larger cutting depth, more atoms are involved in the cutting, cutting force and workpiece temperature are higher, and more defects exist. read less USED (high confidence) Y. Zhao et al., “Composition effects on mechanical properties of pristine sodium borosilicate glass,” International Journal of Applied Glass Science. 2018. link Times cited: 3 USED (high confidence) A. Samanta and I. Grinberg, “Investigation of Si/3C-SiC interface properties using classical molecular dynamics,” Journal of Applied Physics. 2018. link Times cited: 5 Abstract: Molecular dynamics simulations were carried out for differen… read moreAbstract: Molecular dynamics simulations were carried out for different structural models of the Si/3C-SiC interface using the Tersoff SiC potential that can model both Si and SiC. We find that the bonding at the Si/3C-SiC interface has a strong effect on the crystallization of the Si phase and that a degree of intermixing is present between the two materials with some C atoms migrating from the 3C-SiC (hereinafter referred to as SiC) into the Si region. The degree of intermixing is likely to exhibit a strong dependence on the temperature and most likely also increases with time, which would lead to changes in the Si/SiC interface during the life of the Si/SiC composite. The inter-mixing also creates disorder and defects of threefold and fivefold bonded atoms in the vicinity of the interfaces. In particular, {111} 1 2 ⟨ 110 ⟩ misfit dislocations were formed at all three types of interfaces [(100), (110), and (111)] in order to relieve the local stress due to lattice mismatch. Additionally, the Si(110)/SiC(110) and Si(111)/SiC(111) interfaces prepared at higher temperatures show the formation of the {111} 1 6 ⟨ 112 ⟩ partial dislocation which arises due to intrinsic stacking faults. We find that the bonding at the crystalline(c) c-Si/SiC interface is weaker than that in bulk crystalline Si, whereas bonding at the amorphous(a)-Si/SiC interface is stronger than that in amorphous Si. Therefore, the rupture in the yield stress occurs at the vicinity of the Si/SiC interface and in the Si region for the a-Si/SiC systems, respectively. Finally, for both bulk and Si/SiC interface systems, a strong variation of the yield strength with temperature was observed.Molecular dynamics simulations were carried out for different structural models of the Si/3C-SiC interface using the Tersoff SiC potential that can model both Si and SiC. We find that the bonding at the Si/3C-SiC interface has a strong effect on the crystallization of the Si phase and that a degree of intermixing is present between the two materials with some C atoms migrating from the 3C-SiC (hereinafter referred to as SiC) into the Si region. The degree of intermixing is likely to exhibit a strong dependence on the temperature and most likely also increases with time, which would lead to changes in the Si/SiC interface during the life of the Si/SiC composite. The inter-mixing also creates disorder and defects of threefold and fivefold bonded atoms in the vicinity of the interfaces. In particular, {111} 1 2 ⟨ 110 ⟩ misfit dislocations were formed at all three types of interfaces [(100), (110), and (111)] in order to relieve the local stress due to lattice mismatch. Additionally, the Si(110)/SiC(110) a... read less USED (high confidence) N. Liao, H. Zhou, B. Zheng, and W. Xue, “Silicon Oxycarbide-Derived Carbon as Potential NO2 Gas Sensor: A First Principles’ Study,” IEEE Electron Device Letters. 2018. link Times cited: 34 Abstract: Silicon oxycarbide (SiCO)-derived porous carbon is a novel c… read moreAbstract: Silicon oxycarbide (SiCO)-derived porous carbon is a novel class of nano-porous material with unique properties including highly sensitive gas detection. In this letter, SiCO-derived porous carbon (porous SiCO) structures are successfully reproduced by simulating the etching process in experiments. Then, the gas sensing performance of SiCO-derived carbon with different porous morphologies is investigated. The calculated adsorption energy, Mulliken charge transfer, bandgap, and adsorption distance indicate that SiCO-derived porous carbon exhibits a higher sensitivity toward NO2 gas than CO, 2, and acetone in accordance with experimental conclusions. Moreover, the porous SiCO with the largest SSA and PV shows the most excellent NO2 sensing performance. The adsorption of NO2 leads to the appearance of a new strong peak at the edge of the conduction band, resulting in obvious changes of the conductivity of the systems, which is necessary for NO2 detection. read less USED (high confidence) Z. Chang, N. Zhou, C. Zhang, H. Gong, M. Lin, and L. Zhou, “A molecular dynamics study of atomic configurations of dislocations accompanying twins in crystal growth of Si from melt,” Modelling and Simulation in Materials Science and Engineering. 2018. link Times cited: 5 Abstract: Based on the Tersoff potential, molecular dynamics simulatio… read moreAbstract: Based on the Tersoff potential, molecular dynamics simulations for the growth of Si crystals along the 〈112〉 orientation were carried out to investigate the atomic configurations of dislocations and twins. Two typical configurations were observed. One is a sandwich structure which has two twin boundaries and several rows of atoms normally arranged and is ended by a Shockley dislocation with a Burgers vector of 〈112〉/6. The other is composed of two intersecting stacking faults and a Lomer–Cottrell dislocation with a Burgers vector of 〈110〉/6. The two configurations can combine together and form complex atomic configurations in Si crystal. And the two configurations have similar formation processes. Firstly, two twin boundaries or a stacking fault forms in a {111} facet of solid–liquid interface. Then, a dislocation nucleates after the following crystal atom planes dock with each other or the second stacking fault forms. The formation of Shockley dislocation takes a longer time than that of Lomer–Cottrell dislocation due to a larger lattice mismatch ( 1 ¯ 1 ¯ 1 ) of planes. read less USED (high confidence) K. Termentzidis et al., “Enhanced thermal conductivity in percolating nanocomposites: a molecular dynamics investigation.,” Nanoscale. 2018. link Times cited: 6 Abstract: In this work we present a molecular dynamics investigation o… read moreAbstract: In this work we present a molecular dynamics investigation of thermal transport in a silica-gallium nitride nanocomposite. A surprising enhancement of the thermal conductivity for crystalline volume fractions larger than 5% is found, which cannot be predicted by an effective medium approach, not even including percolation effects, the model systematically leading to an underestimation of the effective thermal conductivity. The behavior can instead be reproduced if an effective volume fraction twice larger than the real one is assumed, which translates into a percolation effect surprisingly stronger than the usual one. Such a scenario can be understood in terms of a phonon tunneling between inclusions, enhanced by the iso-orientation of all particles. Indeed, if a misorientation is introduced, the thermal conductivity strongly decreases. We also show that a percolating nanocomposite clearly stands in a different position than other nanocomposites, where thermal transport is dominated by the interface scattering and where parameters such as the interface density play a major role, differently from our case. read less USED (high confidence) A. Sam, R. Hartkamp, S. Kannam, and S. P. Sathian, “Prediction of fluid slip in cylindrical nanopores using equilibrium molecular simulations,” Nanotechnology. 2018. link Times cited: 20 Abstract: We introduce an analytical method to predict the slip length… read moreAbstract: We introduce an analytical method to predict the slip length (Ls) in cylindrical nanopores using equilibrium molecular dynamics (EMD) simulations, following the approach proposed by Sokhan and Quirke for planar channels []. Using this approach, we determined the slip length of water in carbon nanotubes (CNTs) of various diameters. The slip length predicted from our method shows excellent agreement with the results obtained from nonequilibrium molecular dynamics (NEMD) simulations. The data show a monotonically decreasing slip length with an increasing nanotube diameter. The proposed EMD method can be used to precisely estimate slip length in high slip cylindrical systems, whereas, Ls calculated from NEMD is highly sensitive to the velocity profile and may cause large statistical errors due to large velocity slip at the channel surface. We also demonstrated the validity of the EMD method in a BNNT-water system, where the slip length is very small compared to that in a CNT pore of similar diameter. The developed method enables us to calculate the interfacial friction coefficient directly from EMD simulations, while friction can be estimated using NEMD by performing simulations at various external driving forces, thereby increasing the overall computational time. The EMD analysis revealed a curvature dependence in the friction coefficient, which induces the slip length dependency on the tube diameter. Conversely, in flat graphene nanopores, both Ls and friction coefficient show no strong dependency on the channel width. read less USED (high confidence) Y. Gao, Y. Zhou, and M. Hu, “Enormous suppression of phonon transport in silicon nanowires with five-fold twin boundary,” Journal of Materials Chemistry. 2018. link Times cited: 8 Abstract: Si nanowires (NWs) have been experimentally proven to be bet… read moreAbstract: Si nanowires (NWs) have been experimentally proven to be better candidates for thermoelectric applications than other Si-based nanomaterials due to their extremely low thermal conductivity (TC). Designing and manufacturing high-performance Si NW-based thermoelectrics require a systematic and robust understanding of their thermal transport properties. Therefore, various experimentally observed Si NWs, i.e., pure Si NWs, five-fold twinned Si NWs (5T-Si NWs) and alloyed Si NWs are systematically studied here. Our results show that TC of circular-section Si NWs is clearly lower than that of rectangular-section Si NWs, which is caused by the coarser external boundary (EB). Introducing a five-fold twin boundary (TB) in Si NWs can lead to 3–4 times reduction of the TC. Furthermore, Ge-doping can result in further enormous TC reduction, and the TC can be lowered to an extreme value (1.4 W mK−1); this value approaches the lowest limit of the TC of Si-based nanomaterials (1 W mK−1) and is lower than that of pure amorphous Si NWs (2.4 W mK−1). After combining with lattice dynamics analysis, we notice that compared to EB, five-fold TB not only leads to the usual boundary-phonon scattering, but also results in resonance to reduce the phonon group velocity of low-frequency phonons due to its symmetrical structure, i.e., the symmetrical TB can weaken TCs in two ways: vibration and scattering, which enable it to show greater potential in the field of thermoelectrics. There are three major reasons for the extremely low TC of 5T alloyed Si NWs: (1) the hybridization effect caused by the resonance of the five symmetrical independent twin domains. (2) The greater reduction of TC contributed by TB when compared to that of EB. (3) The appearance of non-propagating phonons caused by Ge-doping. These results reveal that the combined implementation of five-fold TB and Ge-doping, which can enormously block the phonon transport in the entire frequency range, is an effective method to reduce TC and consequently to enhance the figure-of-merit (ZT). In general, our investigations can be expected to offer some useful guidance for the enhancement of ZT of conventional silicon materials. read less USED (high confidence) V. Choyal, V. Choyal, and S. I. Kundalwal, “Transversely Isotropic Elastic Properties of Vacancy Defected Boron Nitride Nanotubes Using Molecular Dynamics Simulations,” 2018 IEEE 13th Nanotechnology Materials and Devices Conference (NMDC). 2018. link Times cited: 8 Abstract: Recent breakthroughs in the synthesis of boron nitride nanot… read moreAbstract: Recent breakthroughs in the synthesis of boron nitride nanotubes (BNNTs) attracted researchers' attention again for developing their nanocomposites. This is due to the fact that BNNT possesses wide band gap (~5.5 eV, independent of geometry), strong hardness, chemically and thermally stable, and excellent piezoelectric properties than its carbon-based counterpart. Furthermore, BNNTs have comparable mechanical and thermal properties compared to carbon nanotubes. As the first of its kind, this study reports the transversely isotropic elastic properties of pristine and vacancy defected BNNTs within the framework of MD simulations using a Tersoff force field. This is achieved by imposing axial extension, twist, in-plane biaxial tension, and in-plane shear to the pristine and defective BNNTs. Our results reveal that vacancy concentration of 2% affects profoundly the axial Young's, shear, plane strain bulk and in-plane shear moduli of BNNTs, and decrease their respective values by 14%, 25%, 14% and 18%. The current fundamental study highlights the important role played by vacancy defected BNNTs in determining their mechanical behaviours as fillers in multifunctional nanocomposites. read less USED (high confidence) B. Vasić et al., “Molecules on rails: friction anisotropy and preferential sliding directions of organic nanocrystallites on two-dimensional materials.,” Nanoscale. 2018. link Times cited: 7 Abstract: Two-dimensional (2D) materials are envisaged as ultra-thin s… read moreAbstract: Two-dimensional (2D) materials are envisaged as ultra-thin solid lubricants for nanomechanical systems. So far, their frictional properties at the nanoscale have been studied by standard friction force microscopy. However, lateral manipulation of nanoparticles is a more suitable method to study the dependence of friction on the crystallography of two contacting surfaces. Still, such experiments are lacking. In this study, we combine atomic force microscopy (AFM) based lateral manipulation and molecular dynamics simulations in order to investigate the movements of organic needle-like nanocrystallites grown by van der Waals epitaxy on graphene and hexagonal boron nitride. We observe that nanoneedle fragments - when pushed by an AFM tip - do not move along the original pushing directions. Instead, they slide on the 2D materials preferentially along the needles' growth directions, which act as invisible rails along commensurate directions. Further, when the nanocrystallites were rotated by applying a torque with the AFM tip across the preferential sliding directions, we find an increase of the torsional signal of the AFM cantilever. We demonstrate in conjunction with simulations that both, the significant friction anisotropy and preferential sliding directions are determined by the complex epitaxial relation and arise from the commensurate and incommensurate states between the organic nanocrystallites and the 2D materials. read less USED (high confidence) B. Szpunar, L. Malakkal, J. Rahman, and J. Szpunar, “Atomistic modeling of thermo‐mechanical properties of cubic SiC,” Journal of the American Ceramic Society. 2018. link Times cited: 10 USED (high confidence) Z. Ong, “Tutorial: Concepts and numerical techniques for modeling individual phonon transmission at interfaces,” Journal of Applied Physics. 2018. link Times cited: 15 Abstract: At the nanoscale, thermal transport across the interface bet… read moreAbstract: At the nanoscale, thermal transport across the interface between two lattice insulators can be described by the transmission of bulk phonons and depends on the crystallographic structure of the interface and the bulk crystal lattice. In this tutorial, we give an account of how an extension of the Atomistic Green's Function (AGF) method based on the concept of the Bloch matrix can be used to model the transmission of individual phonon modes and allow us to determine the wavelength and polarization dependence of the phonon transmission. Within this framework, we can explicitly establish the relationship between the phonon transmission coefficient and dispersion. Details of the numerical methods used in the extended AGF method are provided. To illustrate how the extended AGF method can be applied to yield insights into individual phonon transmission, we study the (16,0)/(8,0) carbon nanotube intramolecular junction. The method presented here sheds light on the modal contribution to interfacial thermal transport between solids. read less USED (high confidence) N. Kamanina, “NANOTECHNOLOGY IN OPTICS,” CBU International Conference Proceedings. 2018. link Times cited: 2 Abstract: It is well known that the optical materials are unique and p… read moreAbstract: It is well known that the optical materials are unique and perspective. Optical materials and the devices based on them are operated in the broad spectral range: In the UV spectral range (where the wavelength l is approximately placed in the range of ~ 0.1 - 0.4 microns), in the VIS spectral range (l ~ 0.5 - 0.75 microns), and in the IR spectral range (l is larger than the 0.75-1 microns). These materials can be considered to resolve the different complicated tasks. To study optical materials different techniques and methods should be scrupulously used. Among different applied methods namely the laser oriented technique and nanostructuration approach have some unique features. It can be considered as the effective dominant approach in order to reveal the change of all basic physical-chemical characteristics of the materials. Our own steps in this direction have partially been recently shown too. In the current paper, advantages of the modification of optical material surfaces via a nanotechnology approach will be shown. The surface relief change provokes the spectral, mechanical and wetting phenomena changes. A CO2-laser is applied to modify the optical materials surfaces under the condition when the carbon nanotubes are deposited in vertical position at the materials surfaces. This process permits to organize covalent bonding between the carbon atoms and the model matrix ones. An emphasis will be given on the surface modifications of the materials, such as: LiF, CaF2, KBr, BaF2, Sc, some polymer surface, etc. Mechanisms responsible for the spectral characteristics change, mechanical hardness as well as the increase of the wetting angle will be discussed. The area of the application of the materials studied can be increased. read less USED (high confidence) E. Jalalitalab, M. Abbaspour, and H. Akbarzadeh, “Thermodynamic, structural, and dynamical properties of nano-confined water using SPC/E and TIP4P models by molecular dynamics simulations,” New Journal of Chemistry. 2018. link Times cited: 6 Abstract: Nanoconfined water plays a significant role in nature. In re… read moreAbstract: Nanoconfined water plays a significant role in nature. In recent years, many efforts have been dedicated to determine how the properties of nano-confined water change in nanopores and how these changes influence different systems, such as biological systems, and water flow in different media, such as cements and zeolites. In this work, we have simulated water molecules with different densities between two parallel graphene sheets with different distances at 300 K. Various thermodynamic, structural, and dynamical properties of the confined water molecules have been investigated using the SPC/E and TIP4P models. Our results showed that the confined systems are more stable when the pore size is between 6 and 7 A. The energy of the confined water molecules also decreases with increasing density up to 0.6 g cc−1. Our observations showed that the confined water molecules tend to form square and rhombus structures at higher densities and tend to form pentagonal and hexagonal structures at lower densities. Pentagonal and hexagonal structures can be also more frequently observed for confined water molecules at smaller pore sizes. The most stable structure of the confined water molecules based on the SPC/E model is the rhombic structure. Our results also showed that the most stable state of the TIP4P model has fewer rhombus structures than that of the SPC/E model. Also, the TIP4P model presents greater self-diffusion values (especially at large pore sizes) than the SPC/E model. We also recognized a nanostructure phase transition from a region of high hydrogen bonding (HB) to a region of low HB by decreasing the density below around 0.6 g cc−1. The region of high HB is more ordered and contains more rhombus or square structures. read less USED (high confidence) Z.-zhen Li, J.-T. Wang, H. Mizuseki, and C. Chen, “Computational discovery of a new rhombohedral diamond phase,” Physical Review B. 2018. link Times cited: 24 USED (high confidence) R. Rurali, X. Cartoixà, D. Bedeaux, S. Kjelstrup, and L. Colombo, “The thermal boundary resistance at semiconductor interfaces: a critical appraisal of the Onsager vs. Kapitza formalisms.,” Physical chemistry chemical physics : PCCP. 2018. link Times cited: 1 Abstract: We critically readdress the definition of thermal boundary r… read moreAbstract: We critically readdress the definition of thermal boundary resistance at an interface between two semiconductors. By means of atomistic simulations we provide evidence that the widely used Kapitza formalism predicts thermal boundary resistance values in good agreement with the more rigorous Onsager non-equilibrium thermodynamics picture. The latter is, however, better suited to provide physical insight on interface thermal rectification phenomena. We identify the factors that determine the temperature profile across the interface and the source of interface thermal rectification. To this end we perform non-equilibrium molecular dynamics computational experiments on a Si-Ge system with a graded compositional interface of varying thickness, considering thermal bias of different sign. read less USED (high confidence) N. Zhou, X. Wei, and L. Zhou, “Formation of Dislocations in the Growth of Silicon along Different Crystallographic Directions—A Molecular Dynamics Study,” Crystals. 2018. link Times cited: 10 Abstract: Molecular dynamics simulations of the seeded solidification … read moreAbstract: Molecular dynamics simulations of the seeded solidification of silicon along <100>, <110>, <111> and <112> directions have been carried out. The Tersoff potential is adopted for computing atomic interaction. The control of uniaxial strains in the seed crystals is enabled in the simulations. The results show that the dislocation forms stochastically at the crystal/melt interface, with the highest probability of the formation in <111> growth, which agrees with the prediction from a previously proposed twinning-associated dislocation formation mechanism. Applications of the strains within a certain range are found to inhibit the {111}-twinning-associated dislocation formation, while beyond this range they are found to induce dislocation formation by different mechanisms. read less USED (high confidence) J. Zhang, “Phase transformation in two-dimensional covalent organic frameworks under compressive loading.,” Physical chemistry chemical physics : PCCP. 2018. link Times cited: 9 Abstract: As a new class of two-dimensional (2D) materials, 2D covalen… read moreAbstract: As a new class of two-dimensional (2D) materials, 2D covalent organic frameworks (COFs) are proven to possess remarkable electronic and magnetic properties. However, their mechanical behaviours remain almost unexplored. In this work, taking the recently synthesised dimethylmethylene-bridged triphenylamine (DTPA) sheet as an example, we investigate the mechanical behaviours of 2D COFs based on molecular dynamics simulations together with density functional theory calculations. A novel phase transformation is observed in DTPA sheets when a relatively large in-plane compressive strain is applied to them. Specifically, the crystal structures of the transformed phases are topographically different when the compressive loading is applied in different directions. The compression-induced phase transformation in DTPA sheets is attributed to the buckling of their kagome lattice structures and is found to have significant impacts on their material properties. After the phase transformation, Young's modulus, band gap and thermal conductivity of DTPA sheets are greatly reduced and become strongly anisotropic. Moreover, a large in-plane negative Poisson's ratio is found in the transformed phases of DTPA sheets. It is expected that the results of the compression-induced phase transformation and its influence on the material properties observed in the present DTPA sheets can be further extended to other 2D COFs, since most 2D COFs are found to possess a similar kagome lattice structure. read less USED (high confidence) C. S. Ezquerro, M. Laspalas, A. Chiminelli, F. Serrano, and C. Valero, “Interface Characterization of Epoxy Resin Nanocomposites: A Molecular Dynamics Approach,” Fibers. 2018. link Times cited: 12 Abstract: In polymer nanocomposites, the interface region between the … read moreAbstract: In polymer nanocomposites, the interface region between the matrix and the fillers has been identified as a key interaction region that strongly determines the properties of the final material. Determining its structure is crucial from several points of view, from modeling (i.e., properties prediction) to materials science (i.e., understanding properties/structure relationships). In the presented paper, a method for characterizing the interface region of polymer nanocomposites is described using molecular dynamics (MD) simulations. In particular, the structure of the polymer within the interface region together with its dimension in terms of thickness were analyzed through density profiles. Epoxy resin nanocomposites based on diglycidyl ether of bisphenol A (DGEBA) were studied using this approach, and the interface region with triple walled carbon nanotubes (TWCNT) and carbon fibers (CF) was characterized. The effect of carbon nanotube diameter, type of hardener, and effect of epoxy resin cross-linking degree on interface thickness were analyzed using MD models. From this analysis no general rule on the effect of these parameters on the interface thickness could be established, since in some cases overlapping effects between the analyzed parameters were observed, and each specific case needs to be analyzed independently in detail. Results show that the diameter has an impact on interface thickness, but this effect is affected by the cross-linking degree of the epoxy resin. The type of hardener also has a certain influence on the interface thickness. read less USED (high confidence) J. Zhang, “Piezoelectrically tunable resonance properties of boron nitride nanotube based resonators,” Journal of Applied Physics. 2018. link Times cited: 3 Abstract: Resonance properties such as the resonance frequency, the se… read moreAbstract: Resonance properties such as the resonance frequency, the sensitivity, and the intrinsic dissipation of boron nitride nanotube (BNNT) based resonators are investigated in this work based on molecular dynamics simulations together with density functional theory calculations. A remarkable resonance property comparable to their carbon nanotube (CNT) counterparts is found in the present BNNT based resonators. Moreover, due to the unique piezoelectric characteristic of BNNTs, the resonance properties of BNNT based resonators can be efficiently tailored by external electric fields. It is found that when a negative electric field is applied, the resonance frequency and the sensitivity of BNNT based resonators can be significantly enhanced. This effect is attributed to the fact that due to the inverse piezoelectric response the applied negative electric field will induce a residual tensile stress in BNNTs and thus enhance their equivalent stiffness. Meanwhile, it is also found that the intrinsic dissipation of BNNT based resonators can be mitigated by a positive external electric field, since under this condition the thermoelastic dissipation and the phonon-phonon scattering of BNNTs are both reduced by the piezoelectric effect. Such unique piezoelectrically tunable resonance properties in BNNT based resonators render them have a broader spectrum of applications than their conventional CNT counterparts.Resonance properties such as the resonance frequency, the sensitivity, and the intrinsic dissipation of boron nitride nanotube (BNNT) based resonators are investigated in this work based on molecular dynamics simulations together with density functional theory calculations. A remarkable resonance property comparable to their carbon nanotube (CNT) counterparts is found in the present BNNT based resonators. Moreover, due to the unique piezoelectric characteristic of BNNTs, the resonance properties of BNNT based resonators can be efficiently tailored by external electric fields. It is found that when a negative electric field is applied, the resonance frequency and the sensitivity of BNNT based resonators can be significantly enhanced. This effect is attributed to the fact that due to the inverse piezoelectric response the applied negative electric field will induce a residual tensile stress in BNNTs and thus enhance their equivalent stiffness. Meanwhile, it is also found that the intrinsic dissipation of BN... read less USED (high confidence) P. Budarapu, B. Javvaji, J. Reinoso, M. Paggi, and T. Rabczuk, “A three dimensional adaptive multiscale method for crack growth in Silicon,” Theoretical and Applied Fracture Mechanics. 2018. link Times cited: 16 USED (high confidence) Z. Wu, W. Liu, and L. Zhang, “Critical loading conditions of amorphization, phase transformation, and dilation cracking in 6H‐silicon carbide,” Journal of the American Ceramic Society. 2018. link Times cited: 15 Abstract: Amorphization, phase transformation, and dilation cracking a… read moreAbstract: Amorphization, phase transformation, and dilation cracking are 3 major deformation/failure mechanisms of monocrystalline 6H-SiC. This paper studies their critical formation conditions and mechanisms under hydrostatic pressure and uniaxial compression and tension with the aid of large-scale molecular dynamics simulations. It was found that under hydrostatic pressure the major deformation mechanism is amorphization, that under uniaxial compression the major mechanism turns to phase transformation at low temperature and amorphization at high temperature, and that under uniaxial tension the dominating mechanism becomes dilation cracking. Increasing the temperature reduces the thresholds significantly and brings about a heterogeneous deformation mode. The study further concluded that these deformation mechanisms and their thresholds can be predicted theoretically. read less USED (high confidence) J. Shang, Q. Yang, X. Liu, and C. Wang, “Compressive deformation mechanism of honeycomb-like graphene aerogels,” Carbon. 2018. link Times cited: 15 USED (high confidence) Q. Bai, Z. Wang, Y.-bo Guo, J. Chen, and Y. Shang, “Graphitization Behavior of Single Crystal Diamond for the Application in Nano-Metric Cutting,” Current Nanoscience. 2018. link Times cited: 15 Abstract: Background: Graphitization behavior of diamond has received … read moreAbstract: Background: Graphitization behavior of diamond has received an increasing interest in nanoscale machining of some hard and brittle materials. Diamond has always been an important and excellent tool material in cutting area. However, the graphitization of the diamond tool is inevitable when it was used in special conditions. It is indicated that the graphitization of diamond crystal has great influence on the wear resistance of diamond cutting tool. The graphitization behavior needs to be investigated extensively in nanoscale with an atomic view. Molecular dynamics simulation provides a useful tool for understanding of the graphitization mechanism of diamond. The investigation on graphi-tization behavior of single crystal diamond can also provide a useful reference for the application of diamond cutting tool. Materials and Methods: In this paper, a molecular dynamics (MD) diamond crystal model is built to examine the graphitization behavior of diamond under various conditions. The sixfold ring method was employed to identify the structural characteristics of graphite and diamond. The effects of temperature and crystal orientation on the graphitization of diamond have been revealed. Considering the effect of temperature, the anisotropy of diamond graphitization against various crystal planes is presented and discussed carefully. The nano-metric cutting model of diamond tool evaluated by the sixfold ring meth-od also proves the graphitization mechanisms in atomic view. Results: Results indicate that the sixfold ring method is a reliable method to evaluate the graphitization behavior of diamond crystal. There exists a critical temperature of the graphitization of diamond. The results also show that {111} plane is more easy to get graphitization as compared with other crystal planes. However, {100} plane of diamond model presents the highest anti-graphitization property. Conclusion: The obtained results have provided the in-depth understanding on the wear of diamond tool in nano-metric machining and underpin the development of diamond cutting tool read less USED (high confidence) A. Giri and P. Hopkins, “Giant reduction and tunability of the thermal conductivity of carbon nanotubes through low-frequency resonant modes,” Physical Review B. 2018. link Times cited: 13 Abstract: Manipulating thermal transport by designing materials with c… read moreAbstract: Manipulating thermal transport by designing materials with control of their properties over the entire spectral range of vibrational frequencies would provide a unique path to create solids with designer thermal conductivities. Traditional routes of nanostructuring to reduce the vibrational thermal conductivity of solids typically target narrow bands of the vibrational energy spectrum, which is often based on the characteristic dimensions of the nanostructure. In this work, we demonstrate the ability to simultaneously impact the phonon transport of both highand low-frequency modes by creating defects that act as both high-frequency phonon scattering sites while coherently manipulating low-frequency waves via resonance with the long wavelength phonons. We use atomistic simulations to identify fullerenes functionalized on the sidewalls of carbon nanotubes (CNT) as efficient phonon blocks realized through localized resonances that appear due to hybridization between the modes of the fullerene and the underlying CNT. We show that with a large surface coverage and high periodicity in the inclusion of the covalently bonded fullerenes, the thermal conductivity of individual CNTs can be lowered by more than an order of magnitude, thus providing a large tunability in the thermal transport across these materials. We prescribe the large reduction in thermal conductivity to a combination of resonant phonon localization effects leading to phonon band anticrossings and vibrational scattering effects due to the inclusion of the strongly bonded fullerene molecules. read less USED (high confidence) W. Zhu, G. Zheng, S. Cao, and H. He, “Thermal conductivity of amorphous SiO2 thin film: A molecular dynamics study,” Scientific Reports. 2018. link Times cited: 82 USED (high confidence) A. Galashev, O. Rakhmanova, and K. Ivanichkina, “Graphene and Graphite Supports for Silicene Stabilization: A Computation Study,” Journal of Structural Chemistry. 2018. link Times cited: 21 USED (high confidence) N. Samaraweera, J. Larkin, K.-L. Chan, and K. Mithraratne, “Reduced thermal conductivity of Si/Ge random layer nanowires: A comparative study against superlattice counterparts,” Journal of Applied Physics. 2018. link Times cited: 9 Abstract: Si/Ge nanowires are considered to be promising candidates as… read moreAbstract: Si/Ge nanowires are considered to be promising candidates as efficient thermoelectric materials due to their remarkable thermal insulating performance over bulk counterparts. In this study, thermal insulating performance of Si/Ge nanowires of randomly organized layer thickness, called random layer nanowires (RLNWs), is systematically investigated and compared against superlattice nanowires (SLNWs).The thermal conductivity (TC) of these structures is evaluated via non-equilibrium molecular dynamic simulations, and more informative insight is gained by normal mode decomposition and lattice dynamics calculations. It is demonstrated that the modes in random layer structures, in general, exhibit similar characteristics except the degree of localization to the corresponding superlattice counterparts by comparing the mode spectral energy densities, relaxation times, density of states, and participation ratios. For all physical and geometrical conditions investigated here, RLNWs show improved thermal insulating performance over corresponding SLNWs. More importantly, a RLNW of low mean layer thickness attains even lower TC than the corresponding Si/Ge alloy nanowire indicating the effectiveness of the random layer arrangements. An anomalous trend in TC of RLNWs (larger than the bulk counterpart) is observed at higher cross-sectional widths, and it is explained as a competing effect of phonon localization and wall scattering. Moreover, it is illustrated that the effectiveness of thermal insulating performance of RLNW depends on the fraction of coherent phonons that exist and how effectively those phonons are subject to localization under different cases.Si/Ge nanowires are considered to be promising candidates as efficient thermoelectric materials due to their remarkable thermal insulating performance over bulk counterparts. In this study, thermal insulating performance of Si/Ge nanowires of randomly organized layer thickness, called random layer nanowires (RLNWs), is systematically investigated and compared against superlattice nanowires (SLNWs).The thermal conductivity (TC) of these structures is evaluated via non-equilibrium molecular dynamic simulations, and more informative insight is gained by normal mode decomposition and lattice dynamics calculations. It is demonstrated that the modes in random layer structures, in general, exhibit similar characteristics except the degree of localization to the corresponding superlattice counterparts by comparing the mode spectral energy densities, relaxation times, density of states, and participation ratios. For all physical and geometrical conditions investigated here, RLNWs show improved thermal insulating p... read less USED (high confidence) Y. Guan, Q. Shao, W. Chen, J. Zhang, X. Zhang, and Y. Deng, “Flow-induced voltage generation by driving imidazolium-based ionic liquids over a graphene nano-channel,” Journal of Materials Chemistry. 2018. link Times cited: 10 Abstract: Inspired by the interesting phenomenon that biological syste… read moreAbstract: Inspired by the interesting phenomenon that biological systems have the inherent skill to generate significant bioelectricity when the salt content in fluids flows over highly selective ion channels on cell membranes, in this study, the flow-induced voltage is investigated by driving the pure bulk room-temperature ionic liquid (RTIL) 1-ethyl-3-methylimidazolium tetrafluoroborate ([Emim][BF4]) flowing over a graphene nano-channel consisting of two parallel single-layered graphene sheets using molecular dynamics simulation for the first time. Considering the combined effect of cations and anions in the adsorbed layer on the free charge carriers of the graphene surfaces (the interactions are 12.0 and 7.0 kJ mol−1 per cation/anion and graphene, respectively) and the characteristic of Coulomb's law, we have developed an advanced equation that can effectively and accurately calculate the flow-induced voltage of RTIL and graphene nano-channel system on the nano-scale. A maximum flow-induced voltage of 2.3 μV is obtained from this nano-scaled system because the free charge carrier on the graphene channel surfaces is dragged along the pure bulk RTIL's direction of movement. A saturation of the flow-induced voltage with increased flow velocity is observed, and this saturation can be attributed to the balance between the external driving force and viscous resistance arising from the internal RTIL and graphene nano-channel. Further analysis shows that the flow-induced voltages gradually increase towards saturation from 1.9 to 2.1 μV or decrease from 2.3 to 2.1 μV when the distance between the two parallel single-layered graphene or the area of single-layered graphene of the nano-channel increases from 1 to 5 nm or from 1 to 25 nm2, respectively. Additionally, the influence of the system temperature (viscosity) and average flow velocity on the flow-induced voltage is investigated. read less USED (high confidence) H. Dong, P. Hirvonen, Z. Fan, and T. Ala‐Nissila, “Heat transport in pristine and polycrystalline single-layer hexagonal boron nitride.,” Physical chemistry chemical physics : PCCP. 2018. link Times cited: 22 Abstract: We use a phase field crystal model to generate large-scale b… read moreAbstract: We use a phase field crystal model to generate large-scale bicrystalline and polycrystalline single-layer hexagonal boron nitride (h-BN) samples and employ molecular dynamics (MD) simulations with the Tersoff many-body potential to study their heat transport properties. The Kapitza thermal resistance across individual h-BN grain boundaries is calculated using the inhomogeneous nonequilibrium MD method. The resistance displays strong dependence on the tilt angle, the line tension and the defect density of the grain boundaries. We also calculate the thermal conductivity of pristine h-BN and polycrystalline h-BN with different grain sizes using an efficient homogeneous nonequilibrium MD method. The in-plane and the out-of-plane (flexural) phonons exhibit different grain size scalings of the thermal conductivity in polycrystalline h-BN and the extracted Kapitza conductance is close to that of large-tilt-angle grain boundaries in bicrystals. read less USED (high confidence) L. Zhu, B. Li, and K. Yao, “Thermoelectric transport properties of Ti doped/adsorbed monolayer blue phosphorene,” Nanotechnology. 2018. link Times cited: 14 Abstract: Thermoelectric transport properties of Ti doped or adsorbed … read moreAbstract: Thermoelectric transport properties of Ti doped or adsorbed monolayer blue phosphorene are investigated by density functional theory combined with the nonequilibrium Green’s function formalism. The thermal giant magnetoresistance and a nearly 100% spin polarization which solely relies on the temperature gradient of electrodes without bias or gate voltage are observed. Moreover, the spin Seebeck effect is also found. Furthermore, taking into account the electronic and phonon dispersion, the thermoelectric merit for Ti doping in the monolayer blue phosphorene at room temperature is also studied, the maximum value of thermoelectric merit can reach 1.01 near the Fermi level. The results indicate that Ti doped or adsorbed monolayer blue phosphorene has potential application in both spintronics and spin caloritronics. read less USED (high confidence) P. Hirvonen et al., “Grain extraction and microstructural analysis method for two-dimensional poly and quasicrystalline solids,” Physical Review Materials. 2018. link Times cited: 4 Abstract: While the microscopic structure of defected solid crystallin… read moreAbstract: While the microscopic structure of defected solid crystalline materials has significant impact on their physical properties, efficient and accurate determination of a given polycrystalline microstructure remains a challenge. In this paper, we present a highly generalizable and reliable variational method to achieve this goal for two-dimensional crystalline and quasicrystalline materials. The method is benchmarked and optimized successfully using a variety of large-scale systems of defected solids, including periodic structures and quasicrystalline symmetries to quantify their microstructural characteristics, e.g., grain size and lattice misorientation distributions. We find that many microstructural properties show universal features independent of the underlying symmetries. read less USED (high confidence) V. S. Proshchenko, P. Dholabhai, and S. Neogi, “Heat and charge transport in bulk semiconductors with interstitial defects,” Physical Review B. 2018. link Times cited: 10 Abstract: Interstitial defects are inevitably present in doped semicon… read moreAbstract: Interstitial defects are inevitably present in doped semiconductors that enable modern-day electronic, optoelectronic or thermoelectric technologies. Understanding of stability of interstitials and their bonding mechanisms in the silicon lattice was accomplished only recently with the advent of first-principles modeling techniques, supported by powerful experimental methods. However, much less attention has been paid to the effect of different naturally occurring interstitials on the thermal and electrical properties of silicon. In this work, we present a systematic study of the variability of heat and charge transport properties of bulk silicon, in the presence of randomly distributed interstitial defects (Si, Ge, C and Li). We find through atomistic lattice dynamics and molecular dynamics modeling studies that, interstitial defects scatter heat-carrying phonons to suppress thermal transport-1.56% of randomly distributed Ge and Li interstitials reduce the thermal conductivity of silicon by $\sim$ 30 and 34 times, respectively. Using first principles density functional theory and semi-classical Boltzmann transport theory, we compute electronic transport coefficients of bulk Si with 1.56% Ge, C, Si and Li interstitials, in hexagonal, tetrahedral, split-interstitial and bond-centered sites. We demonstrate that hexagonal-Si and hexagonal-Ge interstitials minimally impact charge transport. To complete the study, we predict the thermoelectric property of an experimentally realizable bulk Si sample that contains Ge interstitials in different symmetry sites. Our research establishes a direct relationship between the variability of structures dictated by fabrication processes and heat and charge transport properties of silicon. The relationship provides guidance to accurately estimate performance of Si-based materials for various technological applications. read less USED (high confidence) B. Mortazavi, M. Shahrokhi, X. Zhuang, and T. Rabczuk, “Boron–graphdiyne: a superstretchable semiconductor with low thermal conductivity and ultrahigh capacity for Li, Na and Ca ion storage,” Journal of Materials Chemistry. 2018. link Times cited: 90 Abstract: Most recently, boron–graphdiyne, a π-conjugated two-dimensio… read moreAbstract: Most recently, boron–graphdiyne, a π-conjugated two-dimensional (2D) structure made from a merely sp carbon skeleton connected with boron atoms was successfully experimentally realized through a bottom-up synthetic strategy. Motivated by this exciting experimental advance, we conducted density functional theory (DFT) and classical molecular dynamics simulations to study the mechanical, thermal conductivity and stability, electronic and optical properties of single-layer B-graphdiyne. We particularly analyzed the application of this novel 2D material as an anode for Li, Na, Mg and Ca ion storage. Uniaxial tensile simulation results reveal that B-graphdiyne owing to its porous structure and flexibility can yield superstretchability. The single-layer B-graphdiyne was found to exhibit a semiconducting electronic character, with a narrow band-gap of 1.15 eV based on the HSE06 prediction. It was confirmed that mechanical straining can be employed to further tune the optical absorbance and electronic band-gap of B-graphdiyne. Ab initio molecular dynamics results reveal that B-graphdiyne can withstand high temperatures, like 2500 K. The thermal conductivity of suspended single-layer B-graphdiyne was predicted to be very low, ∼2.5 W mK−1 at room temperature. Our first-principles results reveal the outstanding prospect of B-graphdiyne as an anode material with ultrahigh charge capacities of 808 mA h g−1, 5174 mA hg−1 and 3557 mA h g−1 for Na, Ca and Li ion storage, respectively. The comprehensive insight provided by this investigation highlights the outstanding physics of B-graphdiyne nanomembranes, and suggests them as highly promising candidates for the design of novel stretchable nanoelectronics and energy storage devices. read less USED (high confidence) J. Davoodi, M. Soleymani, and H. Sabet, “Thermal Stability of Single Walled SiGe Nanotube with Vacancy Defects: a Molecular Dynamics Simulation Study,” Silicon. 2018. link Times cited: 6 USED (high confidence) N. Samaraweera, K.-L. Chan, and K. Mithraratne, “Reduced thermal conductivity of nanotwinned random layer structures: a promising nanostructuring towards efficient Si and Si/Ge thermoelectric materials,” Journal of Physics D: Applied Physics. 2018. link Times cited: 5 Abstract: Si and Si/Ge based nanostructures of reduced lattice thermal… read moreAbstract: Si and Si/Ge based nanostructures of reduced lattice thermal conductivity are widely attractive for developing efficient thermoelectric materials. In this study, we demonstrate the reduced thermal conductivity of Si nanotwinned random layer (NTRL) structures over corresponding superlattice and twin-free counterparts. The participation ratio analysis of vibrational modes shows that a possible cause of thermal conductivity reduction is phonon localization due to the random arrangement of twin boundaries. Via non-equilibrium molecular dynamic simulations, it is shown that ~23 and ~27% reductions over superlattice counterparts and ~55 and 53% over twin-free counterparts can be attained for the structures of total lengths of 90 and 170 nm, respectively. Furthermore, a random twin boundary distribution is applied for Si/Ge random layer structures seeking further reduction of thermal conductivity. A significant reduction in thermal conductivity of Si/Ge structures exceeding the thermal insulating performance of the corresponding amorphous Si structure by ~31% for a total length of 90 nm can be achieved. This reduction is as high as ~98% compared to the twin-free Si counterpart. It is demonstrated that application of randomly organised nanoscale twin boundaries is a promising nanostructuring strategy towards developing efficient Si and Si/Ge based thermoelectric materials in the future. read less USED (high confidence) C. Xiao, H. He, J. Li, and W. Zhu, “Kapitza resistance for nanoscale crystalline and amorphous silicon carbide,” 2018 19th International Conference on Thermal, Mechanical and Multi-Physics Simulation and Experiments in Microelectronics and Microsystems (EuroSimE). 2018. link Times cited: 0 Abstract: The interface between nanoscale films plays a very important… read moreAbstract: The interface between nanoscale films plays a very important role in semiconductor industry. In this paper, the interfacial thermal resistance (Kapitza resistance) of a crystalline and amorphous silicon carbide (SiC) heterojunction has been investigated by using molecular dynamics simulations. It is found that Kapitza resistance at crystalline and amorphous SiC interface depends on the interfacial coupling strength remarkably. Kapitza resistance in the strong interfacial coupling is significantly lower than that in weak coupling. The thickness of the heterojunction and temperature dependence of Kapitza resistance have also been examined. The results have shown that the Kapitza resistance decreases monotonically with the increase of temperature (from 300K to 800K). Moreover, Kapitza resistance can be effectively tuned by cross-plane strain. A 5% compressive strain is able to reduce the Kapitza resistance by 380% in weak coupling case. In contrast, a 5% tensile strain can increase Kapitza resistance by 13%. Our study provides useful guidance to the thermal management and heat dissipation across nanoscale crystalline and amorphous silicon carbide interface, in particular, for the design of silicon carbide nanowire based nano electronics devices. read less USED (high confidence) M. Stockett, M. Wolf, M. Gatchell, H. Schmidt, H. Zettergren, and H. Cederquist, “The threshold displacement energy of buckminsterfullerene C60 and formation of the endohedral defect fullerene He@C59,” Carbon. 2018. link Times cited: 4 USED (high confidence) M. Wang, F. Zhu, Y. Xu, and S. Liu, “Investigation of the differences in nanometric grinding of SiC and Si by molecular dynamics,” 2018 International Conference on Electronics Packaging and iMAPS All Asia Conference (ICEP-IAAC). 2018. link Times cited: 2 Abstract: Silicon carbide (SiC) is gradually entering into commerciali… read moreAbstract: Silicon carbide (SiC) is gradually entering into commercialization as one of the next-gen semiconductor materials. In order to improve its yield and quality, it is important to understand its nanometric grinding mechanism. Silicon (Si) has been used in semiconductor industry for several decades, and its nanometric machining mechanism has been widely studied. However, the machining mechanism of Si can't be directly applied to SiC due to the differences in their physical properties. In this paper, nanometric grinding simulations of monocrystalline Si, 4H-SiC, and 6H-SiC have been performed by molecular dynamics. Rigid and dynamic cutting tool models have been applied and assessed. The results show that rigid cutting tool model can be applied to the simulations of Si for simplicity and dynamic cutting tool model is more appropriate for the simulations of SiC. Grinding force of SiC is much larger than that of Si, and the difference in grinding force between 4H-SiC and 6H-SiC is small. read less USED (high confidence) S. Sadeghzadeh, “Geometric Effects on Nanopore Creation in Graphene and on the Impact-withstanding Efficiency of Graphene Nanosheets.” 2018. link Times cited: 3 Abstract: Single- and multilayer graphene sheets (MLGSs) are projectil… read moreAbstract: Single- and multilayer graphene sheets (MLGSs) are projectile-resisting materials that can be bombarded by nanoparticles to produce graphene sheets of various sizes and distributions of nanopores. These sheets are used in a variety of applications, including DNA sequencing, water desalination, and phase separation. Here, the impact-withstanding efficiency of graphene nanosheets and the primary factors affecting creation of nanopores in these sheets were studied using a molecular dynamics method. The velocity of impacting nanoparticles and resulting displacement in graphene nanosheets are not sufficient criteria for evaluating the impact resistance of sheets with more than six layers. Instead, visual inspection of the bottom side of a graphene sheet should be used. Self-healing is the most important aspect of MLGSs because it closes the paths of penetrating nanoparticles in the upper layers of the sheets. For nanosheets with few layers, self-healing is observed only at very small nanoparticle velocities; however, when the number of layers is more than six, self-healing occurs even at high nanoparticle velocities. In nanoribbon simulations, it was found that layer boundaries improve resistance against projectile impacts that create well-defined oval shapes. By increasing the distance between layers, the carbon atoms of each layer experience more collisions with the carbon atoms of other layers. Thus, increasing the interlayer distance causes the number of unwanted collisions between carbon atoms to increase and the graphene nanosheets to disintegrate. Additionally, as the circularity of nanopores increases, they become more circular and homogeneous, in turn increasing interlayer spacing, the impact-withstanding efficiency of the sheets, and the circular shape of created nanopores. read less USED (high confidence) R. Rajegowda, S. Kannam, R. Hartkamp, and S. P. Sathian, “Thermophoretically driven water droplets on graphene and boron nitride surfaces,” Nanotechnology. 2018. link Times cited: 13 Abstract: We investigate thermally driven water droplet transport on g… read moreAbstract: We investigate thermally driven water droplet transport on graphene and hexagonal boron nitride (h-BN) surfaces using molecular dynamics simulations. The two surfaces considered here have different wettabilities with a significant difference in the mode of droplet transport. The water droplet travels along a straighter path on the h-BN sheet than on graphene. The h-BN surface produced a higher driving force on the droplet than the graphene surface. The water droplet is found to move faster on h-BN surface compared to graphene surface. The instantaneous contact angle was monitored as a measure of droplet deformation during thermal transport. The characteristics of the droplet motion on both surfaces is determined through the moment scaling spectrum. The water droplet on h-BN surface showed the attributes of the super-diffusive process, whereas it was sub-diffusive on the graphene surface. read less USED (high confidence) Y. Liu, B. Li, and L. Kong, “Atomistic insights on the nanoscale single grain scratching mechanism of silicon carbide ceramic based on molecular dynamics simulation,” AIP Advances. 2018. link Times cited: 15 Abstract: The precision and crack-free surface of brittle silicon carb… read moreAbstract: The precision and crack-free surface of brittle silicon carbide (SiC) ceramic was achieved in the nanoscale ductile grinding. However, the nanoscale scratching mechanism and the root causes of SiC ductile response, especially in the atomistic aspects, have not been fully understood yet. In this study, the SiC atomistic scale scratching mechanism was investigated by single diamond grain scratching simulation based on molecular dynamics. The results indicated that the ductile scratching process of SiC could be achieved in the nanoscale depth of cut through the phase transition to an amorphous structure with few hexagonal diamond structure. Furthermore, the silicon atoms in SiC could penetrate into diamond grain which may cause wear of diamond grain. It was further found out that the chip material in the front of grain flowed along the grain side surface to form the groove protrusion as the scratching speed increases. The higher scratching speed promoted more atoms to transfer into the amorphous structure an... read less USED (high confidence) P. Ji, Y. Rong, Y. Zhang, and Y. Tang, “Impacts of cone-structured interface and aperiodicity on nanoscalethermal transport in Si/Gesuperlattices,” Frontiers in Energy. 2018. link Times cited: 1 USED (high confidence) L. Cui, Y. Zhang, X. Du, and G. Wei, “Computational study on thermal conductivity of defective carbon nanomaterials: carbon nanotubes versus graphene nanoribbons,” Journal of Materials Science. 2018. link Times cited: 21 USED (high confidence) D. Martrou, T. Leoni, F. Chaumeton, F. Castanié, S. Gauthier, and X. Bouju, “Giant (12 ×12 ) and (4 ×8 ) reconstructions of the 6 H -SiC(0001) surface obtained by progressive enrichment in Si atoms,” Physical Review B. 2018. link Times cited: 2 Abstract: Silicon carbide (SiC) is nowadays a major material for appli… read moreAbstract: Silicon carbide (SiC) is nowadays a major material for applications in high power electronics, quantum optics, or nitride semiconductors growth. Mastering the surface of SiC substrate is crucial to obtain reproducible results. Previous studies on the 6H-SiC(0001) surface have determined several reconstructions, including the (√ 3× √ 3)-R30 • and the (3×3). Here, we introduce a process of progressive Si enrichment that leads to the formation of two reconstructions, the giant (12×12) and the (4×8). From electron diffraction and tunneling microscopy completed by molecular dynamics simulations, we build models introducing a type of Si adatom bridging two Si surface atoms. Using these Si bridges, we also propose a structure for two other reconstructions, the (2 √ 3×2 √ 3)-R30 • and the (2 √ 3×2 √ 13). We show that five reconstructions follow each other with Si coverage ranging from 1 and 1.444 monolayer. This result opens the way to greatly improve the control of 6H-SiC(0001) at the atomic scale. read less USED (high confidence) H. Cai, Y. Guo, and W. Guo, “Friction induced structural transformations of water monolayers at graphene/Cu interfaces.,” Physical chemistry chemical physics : PCCP. 2018. link Times cited: 6 Abstract: Tribological and structural properties of water monolayers c… read moreAbstract: Tribological and structural properties of water monolayers confined at interfaces between graphene and Cu substrates at cryogenic and room temperatures are extensively studied using molecular dynamics simulations and first-principles calculations. The frictions caused by the sliding of graphene sheets and increasing temperature will reduce the interfacial density of water molecules and lead to structural transformations of water monolayers and direct contacts of graphene with the underlying Cu substrates. Such changes in water structures give rise to higher friction forces and shear strengths at the graphene/Cu interfaces. Depending on the water coverage density and temperature, the motions of graphene on monolayer water covered Cu exhibit stick-slip and continuous slipping behaviors. The strong association of friction characteristics with structural transformations of water molecules could be used to unveil interfacial information of graphene on water adsorbed metal surfaces. read less USED (high confidence) R. Xu, K. Han, and H. Li, “Effect of isotope doping on phonon thermal conductivity of silicene nanoribbons: A molecular dynamics study,” Chinese Physics B. 2018. link Times cited: 13 USED (high confidence) H. Nakano, H. Tetsuka, M. Spencer, and T. Morishita, “Chemical modification of group IV graphene analogs,” Science and Technology of Advanced Materials. 2018. link Times cited: 28 Abstract: Mono-elemental two-dimensional (2D) crystals (graphene, sili… read moreAbstract: Mono-elemental two-dimensional (2D) crystals (graphene, silicene, germanene, stanene, and so on), termed 2D-Xenes, have been brought to the forefront of scientific research. The stability and electronic properties of 2D-Xenes are main challenges in developing practical devices. Therefore, in this review, we focus on 2D free-standing group-IV graphene analogs (graphene quantum dots, silicane, and germanane) and the functionalization of these sheets with organic moieties, which could be handled under ambient conditions. We highlight the present results and future opportunities, functions and applications, and novel device concepts. read less USED (high confidence) P. Ji, Y. Rong, Y. Zhang, and Y. Tang, “Impacts of cone-structured interface and aperiodicity on nanoscalethermal transport in Si/Gesuperlattices,” Frontiers in Energy. 2018. link Times cited: 0 USED (high confidence) J. Shi, X. Wei, J. Chen, K. Sun, and L. Fang, “Influence of Abrasive Shape on the Abrasion and Phase Transformation of Monocrystalline Silicon.” 2018. link Times cited: 12 Abstract: The effect of abrasive shape on the three-body abrasion beha… read moreAbstract: The effect of abrasive shape on the three-body abrasion behaviors of monocrystalline silicon was investigated via molecular dynamics. The axial ratio of abrasive particle varied from 1.00 to 0.40 to mimic abrasive shape. It has been observed that the particle’s movement became sliding instead of rolling when the axial ratio was smaller than a critical value 0.46. In the abrasion process, the friction force and normal force showed an approximately sinusoid-like fluctuation for the rolling ellipsoidal particles, while the front cutting of particle caused that friction force increased and became larger than normal force for sliding particles. The phase transformation process was tracked under different particle’ movement patterns. The Si-II and Bct5 phase producing in loading process can partially transform to Si-III/Si-XII phase, and backtrack to original crystal silicon under pressure release, which also occurred in the abrasion process. The secondary phase transformation showed difference for particles’ rolling and sliding movements after three-body abrasion. The rolling of particle induced the periodical and inhomogeneous deformation of substrates, while the sliding benefited producing high-quality surface in chemical mechanical polishing (CMP) process. This study aimed to construct a more precise model to understand the wear mechanism benefits evaluating the micro-electro-mechanical systems (MEMS) wear and CMP process of crystal materials. read less USED (high confidence) J. Li, W.-qing Meng, K. Dong, X.-ming Zhang, and W. Zhao, “Study of Effect of Impacting Direction on Abrasive Nanometric Cutting Process with Molecular Dynamics,” Nanoscale Research Letters. 2018. link Times cited: 24 USED (high confidence) G. Dimitrakopulos et al., “Compositional and strain analysis of In(Ga)N/GaN short period superlattices,” Journal of Applied Physics. 2018. link Times cited: 12 Abstract: Extensive high resolution transmission and scanning transmis… read moreAbstract: Extensive high resolution transmission and scanning transmission electron microscopy observations were performed in In(Ga)N/GaN multi-quantum well short period superlattices comprising two-dimensional quantum wells (QWs) of nominal thicknesses 1, 2, and 4 monolayers (MLs) in order to obtain a correlation between their average composition, geometry, and strain. The high angle annular dark field Z-contrast observations were quantified for such layers, regarding the indium content of the QWs, and were correlated to their strain state using peak finding and geometrical phase analysis. Image simulations taking into thorough account the experimental imaging conditions were employed in order to associate the observed Z-contrast to the indium content. Energetically relaxed supercells calculated with a Tersoff empirical interatomic potential were used as the input for such simulations. We found a deviation from the tetragonal distortion prescribed by continuum elasticity for thin films, i.e., the strain in the rel... read less USED (high confidence) O. Mykhailenko, Y. I. Prylutskyy, I. Komarov, A. V. Strungar, and O. Mykhailenko, “Карцеранди на основі двошарового силіцену: молекулярні контейнери для нестабільних сполук.” 2017. link Times cited: 0 Abstract: We have studied the formation of a “host-guest” type сarcera… read moreAbstract: We have studied the formation of a “host-guest” type сarcerand with a double-layer silicene (DL-S) as a host and an unstable antiaromatic cyclobutadiene as a guest. By employing the methods of MM+, РМ3 and Monte-Carlo, there has been studied the positioning of molecules of cyclobutadiene in a DL-S depending on intercalate concentration and intercalation temperature. At that the deformation vibrations of the DL-S crystal grate do not exceed 0.017 nm, and the vibrations of the intercalate molecules do not exceed 0.025 nm which provides for configuration and conformation stability of the system. The silicene planes do not move relatively each other and the order of the silicon atoms between the planes remains the same – AB… (similar to the silicene single crystal). When initially heated from 0 to ~273 K, the systems energy grows gradually, then rises sharply between 273–300 K and 350–400 K, then, with the temperature growth, it reaches a plateau which proves its high stability up to ~420 K. In the temperature range 0–273 K there appears physical sorption while chemisorption is observed at higher temperature (~300 K) which is peculiar of π-π interactions of classical aromatic and quasiaromatic cyclic and heterocyclic systems. There have been calculated the UV-spectra of the DL-S depending on the intercalate concentration in terms of the modified Benes-Hilderbrand method. There has been shown that the association constant of the system studied is 380 l·mol –1 , with computation accuracy ≥ 0.977. read less USED (high confidence) W. Yuan et al., “Structural origin of hardness decrease in irradiated sodium borosilicate glass.,” The Journal of chemical physics. 2017. link Times cited: 14 Abstract: Mechanical properties such as hardness and modulus of sodium… read moreAbstract: Mechanical properties such as hardness and modulus of sodium borosilicate (NBS) glasses in irradiation conditions were studied extensively in recent years. With irradiation of heavy ions, a trend that the hardness of NBS glasses decreased and then stabilized with increase of dose has been reported. Variations in network structures were suggested for the decrease of hardness after irradiation. However, details of these variations in a network of glass are not clear yet. In this paper, molecular dynamics was applied to simulate the network variations in a type of NBS glass and the changes in hardness after xenon irradiation. The simulation results indicated that hardness variation decreased with fluence in an exponential law, which was consistent with experimental results. The origin of hardness decrease after irradiation might be attributed to the break of Biv-O links that could be derived from the (1) decrease of average coordinate number of boron, (2) decrease of Si-O-Biv bonds, and (3) increase of non-bridging oxygen. read less USED (high confidence) J. H. Park, R. Murugesan, J. Lee, and N. Aluru, “Anomalous characteristics of pore formation in Graphene induced by Si-nanoparticle bombardment,” MRS Communications. 2017. link Times cited: 1 Abstract: Graphene nanopores are utilized in various notable applicati… read moreAbstract: Graphene nanopores are utilized in various notable applications such as water desalination, molecular separation, and DNA sequencing. However, the creation of stable nanopores is still challenging due to the self-healing nature of graphene. In this study, using molecular dynamics simulations we explore the drilling of nanopores through graphene by bombardment with Si-nanoparticles. This enables the Si-passivation along the nanopore rim, which is known as an efficient way to stabilize graphene nanopores. The interplay between graphene and projectile causes the anomalous behaviors such as local maxima depending on particle size. The observations are thoroughly analyzed with interaction energy and shape changes. read less USED (high confidence) M. Settem, P. Rajak, M. Islam, and S. Bhattacharyya, “Influence of supporting amorphous carbon film thickness on measured strain variation within a nanoparticle.,” Nanoscale. 2017. link Times cited: 5 Abstract: Strain variation within a nanoparticle plays a crucial role … read moreAbstract: Strain variation within a nanoparticle plays a crucial role in tuning its properties. High Resolution Transmission Electron Microscopy (HRTEM) images of a nanoparticle supported on amorphous carbon film are used to determine the strain variation. Experimental measurements in this present study on a single crystalline silver nanoparticle exhibited an unexpected high strain variation. Generally, the influence of carbon film is not accounted for during interpretation of measured strain variation. However, experimental observations raise the question whether the supporting carbon film alters the measured strain variation. In order to address this, strain variation within a simulated Ag nanoparticle supported on an amorphous carbon is measured with varying film thicknesses. The results show that supporting carbon film thickness introduces an artefact leading to more strain variation than what is present within an unsupported nanoparticle. Moreover, the variation increases with increasing supporting carbon film thickness. This effect is more pronounced in a thinner nanoparticle. Without considering this influence, the interpretation of strain within a nanoparticle may introduce severe errors which in turn will affect the tunability of desirable properties for different applications. Since strain measurement depends on the accuracy of the atomic position, the interpretation of any result using the atomic position from HRTEM images of a nanoparticle should consider the influence of supporting film. read less USED (high confidence) J. Martínez-González, N. J. English, and A. Gowen, “Understanding the interface between silicon-based materials and water: Molecular-dynamics exploration of infrared spectra,” AIP Advances. 2017. link Times cited: 14 Abstract: Molecular-dynamics simulations for silicon, hydrogen- and hy… read moreAbstract: Molecular-dynamics simulations for silicon, hydrogen- and hydroxyl-terminated silicon in contact with liquid water, at 220 and 300 K, display water-density ‘ordering’ along the laboratory z-axis, emphasising the hydrophobicity of the different systems and the position of this first adsorbed layer. Density of states (DOS) of the oxygen and proton velocity correlation functions (VACFs) and infrared (IR) spectra of the first monolayer of adsorbed water, calculated via Fourier transformation, indicate similarities to more confined, ice-like dynamical behaviour (redolent of ice). It was observed that good qualitative agreement is obtained between the DOS for this first layer in all systems. The DOS for the lower-frequency zone indicates that for the interface studied (i.e., the first layer near the surface), the water molecules try to organise in a similar form, and that this form is intermediate between liquid water and ice. For IR spectra, scrutiny of the position of the highest-intensity peaks for the stret... read less USED (high confidence) Y. Long and J. Chen, “An investigation of the hot spot formation mechanism for energetic material,” Journal of Applied Physics. 2017. link Times cited: 16 Abstract: The shock-induced pore collapsing and hot spot formation pro… read moreAbstract: The shock-induced pore collapsing and hot spot formation processes of plastic bonded explosives are simulated by molecular dynamics. After shock loading, the temperature field, pressure field, particle velocity field, energy field, plastic work field, and plastic temperature field are calculated by using the virtual grid method. A set of microscopic parameters about the hot spot are evaluated, including the pore collapsing time, pore collapsing speed, plastic work, and hot spot radius. The physical models to describe the energy dissipation and temperature relaxation behaviors of the hot spot are developed. We find that the hot spot formation consists of three steps: pore collapsing, work-heat transition, and temperature relaxation. The pore collapsing speed is proportional to the piston speed, and the temperature relaxation time is proportional to the square of the hot spot radius. read less USED (high confidence) L. M. Sandonas, G. Cuba-Supanta, R. Gutierrez, A. Dianat, C. Landauro, and G. Cuniberti, “Enhancement of thermal transport properties of asymmetric Graphene/hBN nanoribbon heterojunctions by substrate engineering,” Carbon. 2017. link Times cited: 23 USED (high confidence) A. I. Khan, I. Navid, M. Noshin, and S. Subrina, “Thermal transport characterization of hexagonal boron nitride nanoribbons using molecular dynamics simulation,” AIP Advances. 2017. link Times cited: 28 Abstract: Due to similar atomic bonding and electronic structure to gr… read moreAbstract: Due to similar atomic bonding and electronic structure to graphene, hexagonal boron nitride (h-BN) has broad application prospects such as the design of next generation energy efficient nano-electronic devices. Practical design and efficient performance of these devices based on h-BN nanostructures would require proper thermal characterization of h-BN nanostructures. Hence, in this study we have performed equilibrium molecular dynamics (EMD) simulation using an optimized Tersoff-type interatomic potential to model the thermal transport of nanometer sized zigzag hexagonal boron nitride nanoribbons (h-BNNRs). We have investigated the thermal conductivity of h-BNNRs as a function of temperature, length and width. Thermal conductivity of h-BNNRs shows strong temperature dependence. With increasing width, thermal conductivity increases while an opposite pattern is observed with the increase in length. Our study on h-BNNRs shows considerably lower thermal conductivity compared to GNRs. To elucidate these aspect... read less USED (high confidence) K. Azizi et al., “Kapitza thermal resistance across individual grain boundaries in graphene,” Carbon. 2017. link Times cited: 46 USED (high confidence) H. Zhang, H. Han, S. Xiong, H. Wang, S. Volz, and Y. Ni, “Impeded thermal transport in composition graded SiGe nanowires,” Applied Physics Letters. 2017. link Times cited: 18 Abstract: Composition graded nanowires (NWs) have attracted increasing… read moreAbstract: Composition graded nanowires (NWs) have attracted increasing research interest in the application of optoelectronic devices, due to their graded bandgaps caused by the changing composition. However, the thermal transport property of composition graded NWs is not clear, which is critical for their potential applications in electronics and thermoelectrics. In this Letter taking SiGe NW as an example, we explore the thermal transport property of composition graded NWs. Molecular dynamics simulations reveal that the thermal conductivities (κ) of the composition graded SiGe NWs can be reduced up to 57% compared with that of the corresponding SiGe NW with abrupt interfaces. The κ reduction stems from the shortening of phonon mean free paths due to the inhomogeneous composition distributions. The phonon wave packet propagation analysis reveals that the composition gradient can reflect more than 70% of the wave packet energy, and phonon localization is observed in the composition graded region. Our findings suggest a promising prospect of composition graded NWs in the use of thermoelectrics and high temperature coatings, where low thermal conductivity is expected.Composition graded nanowires (NWs) have attracted increasing research interest in the application of optoelectronic devices, due to their graded bandgaps caused by the changing composition. However, the thermal transport property of composition graded NWs is not clear, which is critical for their potential applications in electronics and thermoelectrics. In this Letter taking SiGe NW as an example, we explore the thermal transport property of composition graded NWs. Molecular dynamics simulations reveal that the thermal conductivities (κ) of the composition graded SiGe NWs can be reduced up to 57% compared with that of the corresponding SiGe NW with abrupt interfaces. The κ reduction stems from the shortening of phonon mean free paths due to the inhomogeneous composition distributions. The phonon wave packet propagation analysis reveals that the composition gradient can reflect more than 70% of the wave packet energy, and phonon localization is observed in the composition graded region. Our findings sugge... read less USED (high confidence) J. Zhang, “Elastocaloric effect on the piezoelectric potential of boron nitride nanotubes,” Journal of Physics D: Applied Physics. 2017. link Times cited: 10 Abstract: In this paper, molecular dynamics (MD) simulations and analy… read moreAbstract: In this paper, molecular dynamics (MD) simulations and analytical calculations are performed to study the influence of the elastocaloric effect (ECE) on the piezoelectric potential of hexagonal boron nitride (BN) nanotubes. To take into account the ECE in the simulations and calculations, the adiabatic condition is required. To reach this goal, the heat transfer between the BN nanotubes and their environment is excluded in the present study. In MD simulations, we find a large ECE in BN nanotubes, which will make the temperature of the BN nanotubes greatly change after external loads are applied on them. Moreover, the piezoelectric and dielectric properties of BN nanotubes calculated from MD simulations are found to be strongly dependent on the temperature. The temperature-dependent piezoelectric and dielectric properties together with the ECE are thus considered in the analytical calculations of the piezoelectric potential of BN nanotubes. The obtained analytical results reveal that the large ECE in BN nanotubes will make the piezoelectric potential of BN nanotubes strongly depend on the loading path of external loads. Specifically, stretching a BN nanotube is found to be more efficient than compressing the nanotube to generate the piezoelectric potential. These results are expected to significantly expand the knowledge of the electromechanical behaviours of piezoelectric nanomaterials and provide important guidelines for the optimum design of piezotronics nanodevices. read less USED (high confidence) Z. Fan et al., “Bimodal Grain-Size Scaling of Thermal Transport in Polycrystalline Graphene from Large-Scale Molecular Dynamics Simulations.,” Nano letters. 2017. link Times cited: 28 Abstract: Grain boundaries in graphene are inherent in wafer-scale sam… read moreAbstract: Grain boundaries in graphene are inherent in wafer-scale samples prepared by chemical vapor deposition. They can strongly influence the mechanical properties and electronic and heat transport in graphene. In this work, we employ extensive molecular dynamics simulations to study thermal transport in large suspended polycrystalline graphene samples. Samples of different controlled grain sizes are prepared by a recently developed efficient multiscale approach based on the phase field crystal model. In contrast to previous works, our results show that the scaling of the thermal conductivity with the grain size implies bimodal behavior with two effective Kapitza lengths. The scaling is dominated by the out-of-plane (flexural) phonons with a Kapitza length that is an order of magnitude larger than that of the in-plane phonons. We also show that, to get quantitative agreement with the most recent experiments, quantum corrections need to be applied to both the Kapitza conductance of grain boundaries and the thermal conductivity of pristine graphene, and the corresponding Kapitza lengths must be renormalized accordingly. read less USED (high confidence) T. Otieno and K. Abou-El-Hossein, “Molecular dynamics analysis of nanomachining of rapidly solidified aluminium,” The International Journal of Advanced Manufacturing Technology. 2017. link Times cited: 0 USED (high confidence) L. Giacomozzi et al., “Knockout driven fragmentation of porphyrins.,” Physical chemistry chemical physics : PCCP. 2017. link Times cited: 2 Abstract: We have studied collisions between tetraphenylporphyrin cati… read moreAbstract: We have studied collisions between tetraphenylporphyrin cations and He or Ne at center-of-mass energies in the range 50-110 eV. The experimental results were interpreted in view of density functional theory calculations of dissociation energies and classical molecular dynamics simulations of how the molecules respond to the He/Ne impact. We demonstrate that prompt atom knockout strongly contributes to the total destruction cross sections. Such impulse driven processes typically yield highly reactive fragments and are expected to be important for collisions with any molecular system in this collision energy range, but have earlier been very difficult to isolate for biomolecules. read less USED (high confidence) J. Nie, R. Ranganathan, Z. Liang, and P. Keblinski, “Structural vs. compositional disorder in thermal conductivity reduction of SiGe alloys,” Journal of Applied Physics. 2017. link Times cited: 10 Abstract: We use equilibrium molecular dynamics simulations to determi… read moreAbstract: We use equilibrium molecular dynamics simulations to determine the relative role of compositional and structural disorder in a phononic thermal conductivity reduction by studying three 50-50 SiGe alloy structures: ordered alloys, disordered alloys, and amorphous alloys, as well as pure amorphous Si and Ge structures for reference. While both types of disorders significantly reduce thermal conductivity, structural disorder is much more effective to this aim. The examination of phonon lifetimes in disordered alloys shows high values in a low frequency regime governed by Umklapp scattering that are reduced rapidly with increasing frequency following Rayleigh scattering behavior. The local properties analysis reveals that the structural disorder leads to elastic heterogeneities that are significantly larger than density heterogeneities, which is likely the key reason for amorphous semiconductor alloys having lower thermal conductivity than disordered alloys. Temperature dependence of thermal conductivity indi... read less USED (high confidence) T. M. Dieb, S. Ju, K. Yoshizoe, Z. Hou, J. Shiomi, and K. Tsuda, “MDTS: automatic complex materials design using Monte Carlo tree search,” Science and Technology of Advanced Materials. 2017. link Times cited: 49 Abstract: Complex materials design is often represented as a black-box… read moreAbstract: Complex materials design is often represented as a black-box combinatorial optimization problem. In this paper, we present a novel python library called MDTS (Materials Design using Tree Search). Our algorithm employs a Monte Carlo tree search approach, which has shown exceptional performance in computer Go game. Unlike evolutionary algorithms that require user intervention to set parameters appropriately, MDTS has no tuning parameters and works autonomously in various problems. In comparison to a Bayesian optimization package, our algorithm showed competitive search efficiency and superior scalability. We succeeded in designing large Silicon-Germanium (Si-Ge) alloy structures that Bayesian optimization could not deal with due to excessive computational cost. MDTS is available at https://github.com/tsudalab/MDTS. Graphical Abstract read less USED (high confidence) M. Abdollahi and J. Davoodi, “The influence of covering a germanium nanowire with a single wall carbon nanotube on mechanical properties: A molecular dynamics study,” Journal of Applied Physics. 2017. link Times cited: 6 Abstract: Semiconductor nanowires are potential candidates for applica… read moreAbstract: Semiconductor nanowires are potential candidates for applications in quantum information processing, Josephson junctions, and field-effect transistors. Therefore, this study focused on the effects of covering a germanium nanowire (GeNW) with a single wall carbon nanotube (CNT) on the stress-strain diagram, failure points, and Young's modulus using molecular dynamics simulations. To describe the interactions between atoms in the system, we used Tersoff potential. Also, a Nose-Hoover thermostat was employed to control temperature of the system. The stress-strain curves of GeNW and GeNW inside CNT (CNT-GeNW) were obtained at various temperatures, radii, and strain velocities. It was found that coverage of GeNW with CNT led to 2–6 fold improved Young's modulus. It was also determined that a significant part of the Young's modulus in CNT-GeNW is due to the presence of CNT. Moreover, we defined the behavior of Young's modulus of GeNW as well as CNT-GeNW in the [100], [110], and [111] crystallography direction a... read less USED (high confidence) N. Liao, B. Zheng, M. Zhang, and W. Xue, “First-principles calculation of lithium insertion into homogeneous a-SiC2/5O6/5 as high performance anode,” RSC Advances. 2017. link Times cited: 0 Abstract: Amorphous silicon oxycarbide is considered as a promising an… read moreAbstract: Amorphous silicon oxycarbide is considered as a promising anode material for new generation of lithium-ion batteries, and figuring out the lithiation mechanism is crucial for its application. In this work, first principle calculations are performed to study the atomic structures, formation energy and lithiation voltage of homogeneous SiC2/5O6/5. The interpretation of radial distribution, angular distribution and coordinate number suggests that the Si–O bond tends to break and the Li2O will form at the beginning of lithiation, then the LixO and the LiySi form with increasing Li concentration, which makes a major contribution to the capacity of SiC2/5O6/5. By the Li content dependence of the formation energies curve, the theoretical specific capacity of SiC2/5O6/5 is predicted as 1415 mA h g−1, which is comparable to the reversible capacity of 900 mA h g−1 in experiments. Both the formation energies and the voltage curves suggest lithium is preferable in incorporation with SiC2/5O6/5, and this is attributed to the formation of LixO and LiySi. read less USED (high confidence) N. Kamanina, “Perspective of the Structuration Process Use in the Optoelectronics, Solar Energy, and Biomedicine.” 2017. link Times cited: 4 Abstract: In the current chapter, the results of the optimized organic… read moreAbstract: In the current chapter, the results of the optimized organic and inorganic materials features have been presented and discussed under the conditions when the material volumetric body and their surfaces have been structured. The dramatic change of the main characteristics of the inorganic matrix which surface has been modified with oriented carbon nanotubes and additionally treated by surface electromagnetic waves has been established. The transmittance and reflection spectral change, of the micro-hardness and of the wetting angle increase have been discussed due to the covalent bonding of the carbon nanotubes with the near-surface materials layers. Analytic and molecular dynamics simulations have supported the data. The essential change of the basic macro-parameters of the organic matrix, including the liquid crystal one, via their structuration with the nanoand/or bio-objects such as the fullerenes, carbon nanotubes, shungites, quantum dots, graphene oxides, DNA has been found. The spectral, photorefractive, and photoconductive characteristics modification has been discussed due to the drastic increase of the dipole moment. The laser-induced change of the refractive index has been considered as the indicator of the basic materials macro-parameters changing. It has been predicted that a scientific knowledge and the technology advances can be useful for the solar energy, display technique, for the system to absorb the gas and impurities, for the schemes with the compacted information recording as well as for the biomedicine. read less USED (high confidence) S. Hooda et al., “Mechanistic details of the formation and growth of nanoscale voids in Ge under extreme conditions within an ion track,” Journal of Physics D: Applied Physics. 2017. link Times cited: 8 Abstract: The formation of nanoscale voids in amorphous-germanium (a-G… read moreAbstract: The formation of nanoscale voids in amorphous-germanium (a-Ge), and their size and shape evolution under ultra-fast thermal spikes within an ion track of swift heavy ion, is meticulously expatiated using experimental and theoretical approaches. Two step energetic ion irradiation processes were used to fabricate novel and distinct embedded nanovoids within bulk Ge. The ‘bow-tie’ shape of voids formed in a single ion track tends to attain a spherical shape as the ion tracks overlap at a fluence of about 1 × 1012 ions cm−2. The void assumes a prolate spheroid shape with major axis along the ion trajectory at sufficiently high ion fluences. Small angle x-ray scattering can provide complementary information about the primary stage of void formation hence this technique is applied for monitoring simultaneously their formation and growth dynamics. The results are supported by the investigation of cross-sectional transmission and scanning electron micrographs. The multi-time-scale theoretical approach corroborates the experimental findings and relates the bow-tie shape void formation to density variations as a result of melting and resolidification of Ge within the region of thermal spike generated along an ion track, plus non-isotropic stresses generated towards the end of the thermal spike. read less USED (high confidence) M. Zhang, N. Liao, W. Xue, and P. Yang, “Large-scale molecular dynamics modeling of boron-doped amorphous SiCO ceramics,” Journal of Molecular Modeling. 2017. link Times cited: 4 USED (high confidence) C. Shao, Q. Rong, M. Hu, and H. Bao, “Probing phonon-surface interaction by wave-packet simulation: Effect of roughness and morphology,” Journal of Applied Physics. 2017. link Times cited: 27 Abstract: One way to reduce the lattice thermal conductivity of solids… read moreAbstract: One way to reduce the lattice thermal conductivity of solids is to induce additional phonon–surface scattering through nanostructures. However, the way in which phonons interact with surfaces, especially at the atomic level, is not well understood at present. In this work, we perform two-dimensional atomistic wave-packet simulations to investigate angular-resolved phonon reflection at a surface. Different surface morphologies, including smooth surfaces, periodically rough surfaces, and surfaces with amorphous coatings, are considered. For a smooth surface, mode conversion can occur after reflection, with the resulting wave-packet energy distribution depending on the surface condition and the polarization of the incident phonon. At a periodically rough surface, the reflected wave-packet distribution does not follow the well-known Ziman model but shows a nonmonotonic dependence on the depth of the surface roughness. When an amorphous layer is attached to a smooth surface, the incident wave packet is absorbe... read less USED (high confidence) L. He, F. Zhu, Y. Liu, and S. Liu, “Investigation of machining mechanism of monocrystalline silicon in nanometric grinding,” AIP Advances. 2017. link Times cited: 7 Abstract: Monocrystalline silicon is the foundation of the computer in… read moreAbstract: Monocrystalline silicon is the foundation of the computer industry, so it has a great significance to study the ultra-high precision machining of silicon. Molecular dynamics has been proved as a very effective method for the study of ultra-precision machining in nanoscale. During the grinding of brittle materials in nano-level, there are some unique phenomena such as brittle-ductile transition. To study the machining mechanism in nanometric grinding of monocrystalline silicon, the subsurface damage of oriented Monocrystalline silicon under different grinding speeds were investigated by means of molecular dynamics simulations. The interactions between different atoms are described by the Morse and Tersoff potential. Based on analyzing the mechanism of diamond tool extrusion induced silicon lattice slip and distortion, the grinding process is explained. The movement of atoms and phase transformation are studied. The results show that there is not enough time for atoms beneath the tool to rearrange... read less USED (high confidence) Z. Wang, J. Chen, G. Wang, Q. Bai, and Y. Liang, “Anisotropy of Single-Crystal Silicon in Nanometric Cutting,” Nanoscale Research Letters. 2017. link Times cited: 38 USED (high confidence) P. Patra and R. Batra, “Stress wave propagation in Boron-Nitride nanotubes,” Computational Materials Science. 2017. link Times cited: 7 USED (high confidence) X. Wu, H. Zhao, J. Pei, and D. Yan, “Joining of graphene flakes by low energy N ion beam irradiation,” Applied Physics Letters. 2017. link Times cited: 14 Abstract: An approach utilizing low energy N ion beam irradiation is a… read moreAbstract: An approach utilizing low energy N ion beam irradiation is applied in joining two monolayer graphene flakes. Raman spectrometry and atomic force microscopy show the joining signal under 40 eV and 1 × 1014 cm−2 N ion irradiation. Molecular dynamics simulations demonstrate that the joining phenomenon is attributed to the punch-down effect and the subsequent chemical bond generation between the two sheets. The generated chemical bonds are made up of inserted ions (embedded joining) and knocked-out carbon atoms (saturation joining). The electronic transport properties of the joint are also calculated for its applications. read less USED (high confidence) S. Schweizer et al., “Molecular Modeling of Microporous Structures of Carbide-Derived Carbon-Based Supercapacitors,” Journal of Physical Chemistry C. 2017. link Times cited: 18 Abstract: Microporous carbide-derived carbons are an important structu… read moreAbstract: Microporous carbide-derived carbons are an important structural class for various technological applications. We present two possible strategies based on molecular dynamics simulations for modeling microporous amorphous carbon. In addition, we have investigated the influence of the precursor structure and simulation parameters on the porosity of the final model structure. We observed a minor influence of the precursor structure on the porosity and found that the structural properties such as pore size and hybridization in the modeled carbon structures agree well with experimental findings. Moreover, CO2 adsorption isotherms have been simulated using Monte Carlo simulations for comparsion with experimental data. In this context, we have also considered partially oxidized carbon structures for which an increased uptake of CO2 was observed. read less USED (high confidence) A. Kandemir, A. Ozden, T. Çagin, and C. Sevik, “Thermal conductivity engineering of bulk and one-dimensional Si-Ge nanoarchitectures,” Science and Technology of Advanced Materials. 2017. link Times cited: 17 Abstract: Various theoretical and experimental methods are utilized to… read moreAbstract: Various theoretical and experimental methods are utilized to investigate the thermal conductivity of nanostructured materials; this is a critical parameter to increase performance of thermoelectric devices. Among these methods, equilibrium molecular dynamics (EMD) is an accurate technique to predict lattice thermal conductivity. In this study, by means of systematic EMD simulations, thermal conductivity of bulk Si-Ge structures (pristine, alloy and superlattice) and their nanostructured one dimensional forms with square and circular cross-section geometries (asymmetric and symmetric) are calculated for different crystallographic directions. A comprehensive temperature analysis is evaluated for selected structures as well. The results show that one-dimensional structures are superior candidates in terms of their low lattice thermal conductivity and thermal conductivity tunability by nanostructuring, such as by diameter modulation, interface roughness, periodicity and number of interfaces. We find that thermal conductivity decreases with smaller diameters or cross section areas. Furthermore, interface roughness decreases thermal conductivity with a profound impact. Moreover, we predicted that there is a specific periodicity that gives minimum thermal conductivity in symmetric superlattice structures. The decreasing thermal conductivity is due to the reducing phonon movement in the system due to the effect of the number of interfaces that determine regimes of ballistic and wave transport phenomena. In some nanostructures, such as nanowire superlattices, thermal conductivity of the Si/Ge system can be reduced to nearly twice that of an amorphous silicon thermal conductivity. Additionally, it is found that one crystal orientation, 100, is better than the 111 crystal orientation in one-dimensional and bulk SiGe systems. Our results clearly point out the importance of lattice thermal conductivity engineering in bulk and nanostructures to produce high-performance thermoelectric materials. Graphical Abstract read less USED (high confidence) H. Dai, G. Chen, S. Li, Q. Fang, and B. Hu, “Influence of laser nanostructured diamond tools on the cutting behavior of silicon by molecular dynamics simulation,” RSC Advances. 2017. link Times cited: 32 Abstract: In this study, a series of large-scale molecular dynamics si… read moreAbstract: In this study, a series of large-scale molecular dynamics simulations have been performed to study the nanometric cutting of single crystal silicon with a laser-fabricated nanostructured diamond tool. The material removal behavior of the workpiece using a structured diamond tool cutting is studied. The effects of groove direction, depth, width, factor, and shape on material deformation are carefully investigated by analyzing normal stresses, shear stress, von Mises stress, hydrostatic stress, phase transformation, cutting temperature, cutting force and friction coefficients. Simulation results show that a cutting tool groove orientation of 60° produces a smaller cutting force, less cutting heat, more beta-silicon phase, and less von Mises stress and hydrostatic stress. Moreover, tools with a smaller groove orientation, groove depth and groove width, and larger groove factor lead to more ductile cutting and an increased material removal rate. However, a cutting tool with a smaller groove width results in more heat during the nanoscale cutting process. In addition, the average temperature of the subsurface increases as groove factor increases, showing that a tool groove accelerates heat dissipation to the subsurface atoms. Furthermore, this V-shape groove cutting is shown to improve material removal ability in nanoscale cutting. read less USED (high confidence) L. Bagolini, A. Mattoni, and M. Lusk, “Confinement of vibrational modes within crystalline lattices using thin amorphous layers,” Journal of Physics: Condensed Matter. 2017. link Times cited: 0 Abstract: It is possible to confine vibrational modes to a crystal by … read moreAbstract: It is possible to confine vibrational modes to a crystal by encapsulating it within thin disordered layers with the same average properties as the crystal. This is not due to an impedance mismatch between materials but, rather, to higher order moments in the distribution of density and stiffness in the disordered phase—i.e. it is a result of material substructure. The concept is elucidated in an idealized one-dimensional setting and then demonstrated for a realistic nanocrystalline geometry. This offers the prospect of specifically engineering higher order property distributions as an alternate means of managing phonons. read less USED (high confidence) O. Mykhailenko, Y. Prylutskyy, I. V. Кomarov, and A. V. Strungar, “Structure and Thermal Stability of Co- and Fe - Intercalated Double Silicene Layers,” Nanoscale Research Letters. 2017. link Times cited: 4 USED (high confidence) X. Guo et al., “A novel crystallization pathway for SiGe alloy rapid cooling.,” Physical chemistry chemical physics : PCCP. 2017. link Times cited: 10 Abstract: Understanding the structural evolution of covalent systems u… read moreAbstract: Understanding the structural evolution of covalent systems under rapid cooling is very important to establish a comprehensive solidification theory. Herein, we conducted molecular dynamics simulations to investigate the crystallization of silicon-germanium (SiGe) alloys. It was found that during crystallization, the saturation and orientation of covalent bonds are satisfied in order, resulting in three phase transitions. The saturation is satisfied during a continuous phase transition that occurs in the super-cooled liquid state. When the orientation was satisfied at the local scale, a novel state, the critical-nuclei crystalline (CNC) phase was obtained, where the local diamond structures increase in number with time and ultimately stabilize at an average size at the critical value. Finally with a coordinated rearrangement of atoms, the orientation is satisfied globally and a stable diamond crystal is produced. For SiGe alloys this CNC phase is universal and rather stable, and the stable temperature range has a certain relationship with the cooling rate and number fraction of atoms. This novel pathway is believed to be universal for such materials including carbon. The CNC state can explain the observation that diamond can be obtained without high pressure. These findings will significantly advance the understanding of the mechanism of phase transition, particularly for covalently bonded materials. read less USED (high confidence) F. G. Kühl, T. Kazdal, S. Lang, and M. Hampe, “Adsorption of sulfur dioxide and mixtures with nitrogen at carbon nanotubes and graphene: molecular dynamics simulation and gravimetric adsorption experiments,” Adsorption. 2017. link Times cited: 10 USED (high confidence) J. Zhang and C. Wang, “Beat vibration of hybrid boron nitride-carbon nanotubes – A new avenue to atomic-scale mass sensing,” Computational Materials Science. 2017. link Times cited: 20 USED (high confidence) Q. Liu, H. Luo, L. Wang, and S. Shen, “Tuning the thermal conductivity of silicon carbide by twin boundary: a molecular dynamics study,” Journal of Physics D: Applied Physics. 2017. link Times cited: 10 Abstract: Silicon carbide (SiC) is a semiconductor with excellent mech… read moreAbstract: Silicon carbide (SiC) is a semiconductor with excellent mechanical and physical properties. We study the thermal transport in SiC by using non-equilibrium molecular dynamics simulations. The work is focused on the effects of twin boundaries and temperature on the thermal conductivity of 3C-SiC. We find that compared to perfect SiC, twinned SiC has a markedly reduced thermal conductivity when the twin boundary spacing is less than 100 nm. The Si–Si twin boundary is more effective to phonon scattering than the C–C twin boundary. We also find that the phonon scattering effect of twin boundary decreases with increasing temperature. Our findings provide insights into the thermal management of SiC-based electronic devices and thermoelectric applications. read less USED (high confidence) J. Wang, F. Fang, and X. Zhang, “Nanometric Cutting of Silicon with an Amorphous-Crystalline Layered Structure: A Molecular Dynamics Study,” Nanoscale Research Letters. 2017. link Times cited: 34 USED (high confidence) J. Schneider et al., “ATK-ForceField: a new generation molecular dynamics software package,” Modelling and Simulation in Materials Science and Engineering. 2017. link Times cited: 63 Abstract: ATK-ForceField is a software package for atomistic simulatio… read moreAbstract: ATK-ForceField is a software package for atomistic simulations using classical interatomic potentials. It is implemented as a part of the Atomistix ToolKit (ATK), which is a Python programming environment that makes it easy to create and analyze both standard and highly customized simulations. This paper will focus on the atomic interaction potentials, molecular dynamics, and geometry optimization features of the software, however, many more advanced modeling features are available. The implementation details of these algorithms and their computational performance will be shown. We present three illustrative examples of the types of calculations that are possible with ATK-ForceField: modeling thermal transport properties in a silicon germanium crystal, vapor deposition of selenium molecules on a selenium surface, and a simulation of creep in a copper polycrystal. read less USED (high confidence) T. Rakib, S. Mojumder, S. Das, S. Saha, and M. Motalab, “Graphene and its elemental analogue: A molecular dynamics view of fracture phenomenon,” Physica B-condensed Matter. 2017. link Times cited: 38 USED (high confidence) S. Kuboi, M. Yamage, and S. Ishikawa, “Investigation of plasma-induced damage in silicon trench etching,” 2016 International Symposium on Semiconductor Manufacturing (ISSM). 2016. link Times cited: 1 Abstract: In this study, we investigated the plasma-induced damage in … read moreAbstract: In this study, we investigated the plasma-induced damage in silicon trench etching. The damage was measured by detecting the dark current, which was a very small leakage current thermally generated from silicon crystal defects. The results indicated that both the amount and depth of the sidewall damage in the trenches were almost the same as those of the bottom damage. From the results of analysis and simulation, we considered that the crystal defects inducing isotropic damage were mainly formed by hydrogen ions diffusing in the silicon trenches. read less USED (high confidence) B. Javvaji et al., “Mechanical properties of Graphene: Molecular dynamics simulations correlated to continuum based scaling laws,” Computational Materials Science. 2016. link Times cited: 41 USED (high confidence) T. Schmidt, R. Albuquerque, R. Kempe, and S. Kümmel, “Investigating the electronic structure of a supported metal nanoparticle: Pd in SiCN.,” Physical chemistry chemical physics : PCCP. 2016. link Times cited: 4 Abstract: We investigate the electronic structure of a Palladium nanop… read moreAbstract: We investigate the electronic structure of a Palladium nanoparticle that is partially embedded in a matrix of silicon carbonitride. From classical molecular dynamics simulations we first obtain a representative atomic structure. This geometry then serves as input to density-functional theory calculations that allow us to access the electronic structure of the combined system of particle and matrix. In order to make the computations feasible, we devise a subsystem strategy for calculating the relevant electronic properties. We analyze the Kohn-Sham density of states and pay particular attention to d-states which are prone to be affected by electronic self-interaction. We find that the density of states close to the Fermi level is dominated by states that originate from the Palladium nanoparticle. The matrix has little direct effect on the electronic structure of the metal. Our results contribute to explaining why silicon carbonitride does not have detrimental effects on the catalytic properties of palladium particles and can serve positively as a stabilizing mechanical support. read less USED (high confidence) W. Shou and H. Pan, “Silicon-wall interfacial free energy via thermodynamics integration.,” The Journal of chemical physics. 2016. link Times cited: 7 Abstract: We compute the interfacial free energy of a silicon system i… read moreAbstract: We compute the interfacial free energy of a silicon system in contact with flat and structured walls by molecular dynamics simulation. The thermodynamics integration method, previously applied to Lennard-Jones potentials [R. Benjamin and J. Horbach, J. Chem. Phys. 137, 044707 (2012)], has been extended and implemented in Tersoff potentials with two-body and three-body interactions taken into consideration. The thermodynamic integration scheme includes two steps. In the first step, the bulk Tersoff system is reversibly transformed to a state where it interacts with a structureless flat wall, and in a second step, the flat structureless wall is reversibly transformed into an atomistic SiO2 wall. Interfacial energies for liquid silicon-wall interfaces and crystal silicon-wall interfaces have been calculated. The calculated interfacial energies have been employed to predict the nucleation mechanisms in a slab of liquid silicon confined by two walls and compared with MD simulation results. read less USED (high confidence) C. Zhang, Y. Luo, K. Li, N. Zhou, and L. Zhou, “The influence of a threading dislocation on (110) interface morphology and growth rate of silicon crystal growth from melt,” Applied Physics A. 2016. link Times cited: 4 USED (high confidence) B. Zhao 赵, Y. Wang 王, C. Liu 刘, and X. Wang 王, “Molecular dynamics simulation of structural change at metal/semiconductor interface induced by nanoindenter,” Chinese Physics B. 2016. link Times cited: 0 Abstract: The structures of the Si/Cu heterogenous interface impacted … read moreAbstract: The structures of the Si/Cu heterogenous interface impacted by a nanoindenter with different incident angles and depths are investigated in detail using molecular dynamics simulation. The simulation results suggest that for certain incident angles, the nanoindenter with increasing depth can firstly increase the stress of each atom at the interface and it then introduces more serious structural deformation of the Si/Cu heterogenous interface. A nanoindenter with increasing incident angle (absolute value) can increase the length of the Si or Cu extended atom layer. It is worth mentioning that when the incident angle of the nanoindenter is between −45° and 45°, these Si or Cu atoms near the nanoindenter reach a stable state, which has a lower stress and a shorter length of the Si or Cu extended atom layer than those of the other incident angles. This may give a direction to the planarizing process of very large scale integration circuits manufacture. read less USED (high confidence) X. Mu, L. Wang, X. Yang, P. Zhang, A. To, and T. Luo, “Corrigendum: Ultra-low Thermal Conductivity in Si/Ge Hierarchical Superlattice Nanowire,” Scientific Reports. 2016. link Times cited: 3 USED (high confidence) X.-Y. Sun, Y. Qi, W. Ouyang, X.-Q. Feng, and Q. Li, “Energy corrugation in atomic-scale friction on graphite revisited by molecular dynamics simulations,” Acta Mechanica Sinica. 2016. link Times cited: 21 USED (high confidence) H. Seyf and A. Henry, “A method for distinguishing between propagons, diffusions, and locons,” Journal of Applied Physics. 2016. link Times cited: 81 Abstract: The majority of intuition on phonon transport has been deriv… read moreAbstract: The majority of intuition on phonon transport has been derived from studies of homogenous crystalline solids, where the atomic composition and structure are periodic. For this specific class of materials, the solutions to the equations of motions for the atoms (in the harmonic limit) result in plane wave modulated velocity fields for the normal modes of vibration. However, it has been known for several decades that whenever a system lacks periodicity, either compositional or structural, the normal modes of vibration can still be determined (in the harmonic limit), but the solutions take on different characteristics and many modes may not be plane wave modulated. Previous work has classified the types of vibrations into three primary categories, namely, propagons, diffusions, and locons. One can use the participation ratio to distinguish locons, from propagons and diffusons, which measures the extent to which a mode is localized. However, distinguishing between propagons and diffusons has remained a challe... read less USED (high confidence) A. Galashev and V. Polukhin, “Computer simulation of heating of nickel and mercury on graphene,” Russian Metallurgy (Metally). 2016. link Times cited: 0 USED (high confidence) A. Giri, J. L. Braun, and P. Hopkins, “Effect of crystalline/amorphous interfaces on thermal transport across confined thin films and superlattices,” Journal of Applied Physics. 2016. link Times cited: 36 Abstract: We report on the thermal boundary resistances across crystal… read moreAbstract: We report on the thermal boundary resistances across crystalline and amorphous confined thin films and the thermal conductivities of amorphous/crystalline superlattices for Si/Ge systems as determined via non-equilibrium molecular dynamics simulations. Thermal resistances across disordered Si or Ge thin films increase with increasing length of the interfacial thin films and in general demonstrate higher thermal boundary resistances in comparison to ordered films. However, for films ≲3 nm, the resistances are highly dependent on the spectral overlap of the density of states between the film and leads. Furthermore, the resistances at a single amorphous/crystalline interface in these structures are much lower than those at interfaces between the corresponding crystalline materials, suggesting that diffusive scattering at an interface could result in higher energy transmissions in these systems. We use these findings, together with the fact that high mass ratios between amorphous and crystalline materials can... read less USED (high confidence) S. Sadeghzadeh, “Benchmarking the penetration-resistance efficiency of multilayer graphene sheets due to spacing the graphene layers,” Applied Physics A. 2016. link Times cited: 18 USED (high confidence) S. Sadeghzadeh, “Benchmarking the penetration-resistance efficiency of multilayer graphene sheets due to spacing the graphene layers,” Applied Physics A. 2016. link Times cited: 0 USED (high confidence) A. Sgouros, A. Sgouros, G. Kalosakas, G. Kalosakas, C. Galiotis, and K. Papagelis, “Uniaxial compression of suspended single and multilayer graphenes,” 2D Materials. 2016. link Times cited: 19 Abstract: The mechanical response of single and multiple graphene shee… read moreAbstract: The mechanical response of single and multiple graphene sheets under uniaxial compressive loads was studied with molecular dynamics (MD) simulations, using different semi-empirical force fields at different boundary conditions or constrains. Compressive stress–strain curves were obtained and the critical stress/strain values were derived. The MD results are compared to the linear elasticity continuum theory for loaded slabs. Concerning the length dependence of critical values, qualitatively similar behavior is observed between the theory and numerical simulations for single layer graphenes, as the critical stress/strain for buckling was found to scale to the inverse squared length. However discrepancies were noted for multilayer graphenes, where the critical buckling stress also decreased with increasing length, though at a slower rate than expected from elastic buckling analysis. read less USED (high confidence) Y. Zhou, Y. Yao, and M. Hu, “Boundary scattering effect on the thermal conductivity of nanowires,” Semiconductor Science and Technology. 2016. link Times cited: 7 Abstract: Tuning the surface boundary structures of crystal nanowires … read moreAbstract: Tuning the surface boundary structures of crystal nanowires (NWs) is one of the most popular ways to control the thermal conductivity of NWs. In this paper, non-equilibrium molecular dynamic simulations (NEMD) and time domain normal mode analysis (TDNMA) are performed to investigate the thermal transport properties of Ar (length of 52.9 nm, width of 4.23 nm) and Ge (56.5 nm long and 4.52 nm wide) NWs with different surface boundary structures. Results show that both the total and modal thermal conductivity have a dramatic difference among the NWs with the same diameter (the maximal and minimal thermal conductivity of Ar (Ge) NWs are 1.25 (15.3) and 0.60 (5.64) W/mK, respectively), which suggests the efficiency of nanoscale thermoelectric devices and heat dissipation devices can be largely tuned by only changing the boundary orientation. The fundamental mechanism responsible for such a discrepancy is found to mainly originate from different phonon group velocity (combined with phonon relaxation time for Ar NWs). The results are quite helpful for understanding the boundary scattering effect on thermal transport and also facilitating the design of nanoscale devices by tailoring the boundary structures. read less USED (high confidence) A. Redkov, A. Redkov, A. Osipov, A. Osipov, S. Kukushkin, and S. Kukushkin, “Molecular dynamics simulation of the indentation of nanoscale films on a substrate,” Technical Physics Letters. 2016. link Times cited: 8 USED (high confidence) I. Leven, T. Maaravi, I. Azuri, L. Kronik, and O. Hod, “Interlayer Potential for Graphene/h-BN Heterostructures.,” Journal of chemical theory and computation. 2016. link Times cited: 103 Abstract: We present a new force-field potential that describes the in… read moreAbstract: We present a new force-field potential that describes the interlayer interactions in heterojunctions based on graphene and hexagonal boron nitride (h-BN). The potential consists of a long-range attractive term and a short-range anisotropic repulsive term. Its parameters are calibrated against reference binding and sliding energy profiles for a set of finite dimer systems and the periodic graphene/h-BN bilayer, obtained from density functional theory using a screened-exchange hybrid functional augmented by a many-body dispersion treatment of long-range correlation. Transferability of the parametrization is demonstrated by considering the binding energy of bulk graphene/h-BN alternating stacks. Benchmark calculations for the superlattice formed when relaxing the supported periodic heterogeneous bilayer provide good agreement with both experimental results and previous computational studies. For a free-standing bilayer we predict a highly corrugated relaxed structure. This, in turn, is expected to strongly alter the physical properties of the underlying monolayers. Our results demonstrate the potential of the developed force-field to model the structural, mechanical, tribological, and dynamic properties of layered heterostructures based on graphene and h-BN. read less USED (high confidence) N. Zhou 周, B. Liu 刘, C. Zhang 张, K. Li 李, and Lang 浪 Zhou 周, “Molecular dynamics study of anisotropic growth of silicon,” Chinese Physics B. 2016. link Times cited: 2 Abstract: Based on the Tersoff potential, molecular dynamics simulatio… read moreAbstract: Based on the Tersoff potential, molecular dynamics simulations have been performed to investigate the kinetic coefficients and growth velocities of Si (100), (110), (111), and (112) planes. The sequences of the kinetic coefficients and growth velocities are μ(100) > μ(110) > μ(112) > μ(111) and v(100) > v(110) > v(112) > v(111), respectively, which are not consistent with the sequences of the interface energies, interplanar spacings, and melting points of the four planes. However, they agree well with the sequences of the distributions and diffusion coefficients of the melting atoms near the solid–liquid interfaces. It indicates that the atomic distributions and diffusion coefficients affected by the crystal orientations determine the anisotropic growth of silicon. The formation of stacking fault structure will further decrease the growth velocity of the Si (111) plane. read less USED (high confidence) R. Rurali et al., “Heat transport through a solid-solid junction: the interface as an autonomous thermodynamic system.,” Physical chemistry chemical physics : PCCP. 2016. link Times cited: 18 Abstract: We perform computational experiments using nonequilibrium mo… read moreAbstract: We perform computational experiments using nonequilibrium molecular dynamics simulations, showing that the interface between two solid materials can be described as an autonomous thermodynamic system. We verify the local equilibrium and give support to the Gibbs description of the interface also away from the global equilibrium. In doing so, we reconcile the common formulation of the thermal boundary resistance as the ratio between the temperature discontinuity at the interface and the heat flux with a more rigorous derivation from nonequilibrium thermodynamics. We also show that thermal boundary resistance of a junction between two pure solid materials can be regarded as an interface property, depending solely on the interface temperature, as implicitly assumed in some widely used continuum models, such as the acoustic mismatch model. Thermal rectification can be understood on the basis of different interface temperatures for the two flow directions. read less USED (high confidence) S. Sadeghzadeh, “On the oblique collision of gaseous molecules with graphene nanosheets,” Molecular Simulation. 2016. link Times cited: 19 Abstract: In this paper, normal and tangential coefficients of restitu… read moreAbstract: In this paper, normal and tangential coefficients of restitution for gaseous molecules colliding with layerwise (single and few layers) graphene nanosheets were calculated using non-equilibrium molecular dynamics method. The normal and tangential coefficients of restitution depend on impact angle, velocity and landing position of projectiles. These parameters were evaluated computationally by implementation of several operations. Some differences were observed between proposed problem and macro-scale nature. The most notable difference was proportionality between the restitution coefficients and impact velocity, while in the case of macro-scale systems, they have inverse relation. Number of layers of graphene substrate does not contribute significantly to the normal and tangential coefficients of restitution. On the other hand, except for hydrogen, where its normal coefficient of restitution is approximately unity, the normal coefficient of restitution for other gasses increases as impact angle increases. Furthermore, tangential coefficients of restitution reduce with impact angle. These results can offer additional insights for further understanding the impact mechanisms and bombardment-related phenomena in low-dimensional materials. Presented results could be utilised to optimise some applied operations such as porosity generation via bombardment of layered nanostructures, gas detection process, thermal management and pressure sensor applications. read less USED (high confidence) T. Feng and X. Ruan, “Ultra-low thermal conductivity in graphene nanomesh,” Carbon. 2016. link Times cited: 52 USED (high confidence) S. Srinivasan, U. Ray, and G. Balasubramanian, “Thermal conductivity reduction in analogous 2D nanomaterials with isotope substitution: Graphene and silicene,” Chemical Physics Letters. 2016. link Times cited: 12 USED (high confidence) B. Wang, B. Gu, H. Zhang, and X.-Q. Feng, “Molecular Dynamics Simulation on Hydrogen Ion Implantation Process in Smart-Cut Technology,” Acta Mechanica Solida Sinica. 2016. link Times cited: 8 USED (high confidence) Q. Shao, J. Jia, Y. Guan, X. He, and X. Zhang, “Flow-induced voltage generation by moving a nano-sized ionic liquids droplet over a graphene sheet: Molecular dynamics simulation.,” The Journal of chemical physics. 2016. link Times cited: 12 Abstract: In this work, the phenomenon of the voltage generation is ex… read moreAbstract: In this work, the phenomenon of the voltage generation is explored by using the molecular dynamics simulations, which is performed by driving a nano-sized droplet of room temperature ionic liquids moving along the monolayer graphene sheet for the first time. The studies show that the cations and anions of the droplet will move with velocity nonlinearly increasing to saturation arising by the force balance. The traditional equation for calculating the induced voltage is developed by taking the charge density into consideration, and larger induced voltages in μV-scale are obtained from the nano-size simulation systems based on the ionic liquids (ILs) for its enhanced ionic drifting velocities. It is also derived that the viscosity acts as a reduction for the induced voltage by comparing systems composed of two types of ILs with different viscosity and temperature. read less USED (high confidence) О. V. Мykhailenko, Y. Prylutskyy, І. V. Кomarov, and А. V. Strungar, “Thermodynamic Complexing of Monocyclopentadienylferrum (II) Intercalates with Double-Walled Carbon Nanotubes,” Nanoscale Research Letters. 2016. link Times cited: 4 USED (high confidence) J. Sun, A. Ma, J. Jiang, J. Han, and Y. Han, “Orientation-dependent mechanical behavior and phase transformation of mono-crystalline silicon,” Journal of Applied Physics. 2016. link Times cited: 22 Abstract: We perform a large-scale molecular dynamics simulation of na… read moreAbstract: We perform a large-scale molecular dynamics simulation of nanoindentation on the (100), (110), and (111) oriented silicon surface to investigate the orientation-dependent mechanical behavior and phase transformation of monocrystalline silicon. The results show both the remarkable anisotropic mechanical behavior and structure phase transformation of monocrystalline silicon. The mechanical behavior of the (110) and (111) oriented surfaces are similar (has a high indentation modulus, low critical indentation depth for the onset of plastic deformation) but quite different from the (100) oriented surface. The mechanical behavior is carefully linked to the phase transformation. The formation of crystalline bct5 phase and β-Si phase is the fundamental phase transformation mechanism for (100) oriented surface. But, a large number of amorphous silicon can be found beneath the indenter for (110) and (111) oriented surface beside the bct5 phase and β-Si phase. The β-Si phase region is relatively small for (110) and ... read less USED (high confidence) Q. He, J. Fei, C. Tang, J. Zhong, and L. Meng, “Mechanical behavior of silicon carbide nanoparticles under uniaxial compression,” Journal of Nanoparticle Research. 2016. link Times cited: 5 USED (high confidence) O. Mykhailenko, Y. Prylutskyy, I. Komarov, A. V. Strungar, and N. Tsierkezos, “‘Guest‐host’ intercalate of double‐walled
carbon nanotube with tricarbonyl
(cyclopentadienyl)manganese,” Materialwissenschaft und Werkstofftechnik. 2016. link Times cited: 4 Abstract: The positioning of tricarbonyl(cyclopentadienyl)manganese mo… read moreAbstract: The positioning of tricarbonyl(cyclopentadienyl)manganese molecules in double‐walled (5.5)@(10.10) carbon nanotubes depending on their concentration and temperature was studied using the methods of molecular dynamics, semi‐empirical quantum‐chemical parameterized model number 3 and Monte‐Carlo. The molecules were found to form stable bonds with the carbon nanotubes walls, with a tendency between intercalate stability and the carbon nanotubes structure. A temperature increase (above ˜460 K) causes gradual bond ruining followed by extrusion of interwall intercalate. Further temperature increase up to 600–750 K is characterised with intercalate external surface desorption, stabilising the whole system and keeping the interwall intercalate only. Double‐walled carbon nanotubes UV‐spectra depending on the intercalate concentration and association constant of the “double‐walled carbon nanotubes‐intercalate” system were calculated. A combination of unique optical, electrical and magnetic behaviour of cyclopentadienyl complexes with their ability to form high‐stable intercalate with carbon nanotubes opens a prospect of their application in nanotechnology. read less USED (high confidence) X. Dong and Y. Shin, “Multiscale Modeling for Predicting the Mechanical Properties of Silicon Carbide Ceramics,” Journal of the American Ceramic Society. 2016. link Times cited: 7 USED (high confidence) A. Özden, A. Kandemir, F. Ay, N. K. Perkgöz, and C. Sevik, “Thermal Conductivity Suppression in Nanostructured Silicon and Germanium Nanowires,” Journal of Electronic Materials. 2016. link Times cited: 8 USED (high confidence) M.-Q. Le, “Cohesive energy in graphene/MoS2 heterostructures,” Meccanica. 2016. link Times cited: 0 USED (high confidence) Y. Cai, Q. Pei, G. Zhang, and Y.-W. Zhang, “Decoupled electron and phonon transports in hexagonal boron nitride-silicene bilayer heterostructure,” Journal of Applied Physics. 2016. link Times cited: 31 Abstract: Calculations based on the density functional theory and empi… read moreAbstract: Calculations based on the density functional theory and empirical molecular dynamics are performed to investigate interlayer interaction, electronic structure and thermal transport of a bilayer heterostructure consisting of silicene and hexagonal boron nitride (h-BN). In this heterostructure, the two layers are found to interact weakly via a non-covalent binding. As a result, the Dirac cone of silicene is preserved with the Dirac cone point being located exactly at the Fermi level, and only a small amount of electrons are transferred from h-BN to silicene, suggesting that silicene dominates the electronic transport. Molecular dynamics calculation results demonstrate that the heat current along h-BN is six times of that along silicene, suggesting that h-BN dominates the thermal transport. This decoupled role of h-BN and silicene in thermal and electronic transport suggests that the BN-silicene bilayer heterostructure is promising for thermoelectric applications. read less USED (high confidence) K. Gordiz and A. Henry, “Phonon transport at interfaces: Determining the correct modes of vibration,” Journal of Applied Physics. 2016. link Times cited: 59 Abstract: For many decades, phonon transport at interfaces has been in… read moreAbstract: For many decades, phonon transport at interfaces has been interpreted in terms of phonons impinging on an interface and subsequently transmitting a certain fraction of their energy into the other material. It has also been largely assumed that when one joins two bulk materials, interfacial phonon transport can be described in terms of the modes that exist in each material separately. However, a new formalism for calculating the modal contributions to thermal interface conductance with full inclusion of anharmonicity has been recently developed, which now offers a means for checking the validity of this assumption. Here, we examine the assumption of using the bulk materials' modes to describe the interfacial transport. The results indicate that when two materials are joined, a new set of vibrational modes are required to correctly describe the transport. As the modes are analyzed, certain classifications emerge and some of the most important modes are localized at the interface and can exhibit large conduc... read less USED (high confidence) J. Wallace, D. Chen, and L. Shao, “Carbon Displacement-Induced Single Carbon Atomic Chain Formation and its Effects on Sliding of SiC Fibers in SiC/graphene/SiC Composite,” Materials Research Letters. 2016. link Times cited: 12 Abstract: Understanding radiation effects on the mechanical properties… read moreAbstract: Understanding radiation effects on the mechanical properties of SiC composites is important to their application in advanced reactor designs. By means of molecular dynamics simulations, we found that due to strong interface bonding between the graphene layers and SiC, the sliding friction of SiC fibers is largely determined by the frictional behavior between graphene layers. Upon sliding, carbon displacements between graphene layers can act as seed atoms to induce the formation of single carbon atomic chains (SCACs) by pulling carbon atoms from the neighboring graphene planes. The formation, growth, and breaking of SCACs determine the frictional response to irradiation. read less USED (high confidence) C. Androulidakis, E. Koukaras, J. Parthenios, G. Kalosakas, K. Papagelis, and C. Galiotis, “Graphene flakes under controlled biaxial deformation,” Scientific Reports. 2015. link Times cited: 80 USED (high confidence) Y.-Y. Liu, W.-X. Zhou, and K. Chen, “Conjunction of standing wave and resonance in asymmetric nanowires: a mechanism for thermal rectification and remote energy accumulation,” Scientific Reports. 2015. link Times cited: 19 USED (high confidence) X.-Y. Sun, Y. Qi, W. Ouyang, X.-Q. Feng, and Q. Li, “Energy corrugation in atomic-scale friction on graphite revisited by molecular dynamics simulations,” Acta Mechanica Sinica. 2015. link Times cited: 0 USED (high confidence) J. Zhang and S. Meguid, “Effect of number of layers upon piezoelectric behaviour of multi-walled boron nitride nanotubes,” Journal of Physics D: Applied Physics. 2015. link Times cited: 14 Abstract: In this effort, we examined the piezoelectric properties of … read moreAbstract: In this effort, we examined the piezoelectric properties of the multi-walled boron nitride nanotubes (BNNTs), and the influence of the tube layer number on these properties using molecular dynamics (MD) simulations. The results reveal that the piezoelectric coefficient is positive for BNNTs with odd numbers of layers but negative for those with even numbers of layers. For both, odd and even cases, the magnitude of the piezoelectric coefficient is found to decrease with increasing layer number of BNNTs. A simple continuum mechanics model is developed and reveals that the observed layer number-dependent piezoelectric coefficient of the multi-walled BNNTs mainly originates from their unique inversely stacked structure. In addition, integrating the continuum mechanics model with the MD data leads to an explicit expression for the piezoelectric coefficient of multi-walled BNNTs, which can be easily used to predict the piezoelectric coefficient of BNNTs with various layer numbers. read less USED (high confidence) A. Galashev and Y. Zaikov, “Computer simulation of Li+ ion interaction with a graphene sheet,” Russian Journal of Physical Chemistry A. 2015. link Times cited: 17 USED (high confidence) Y. Zhu, G. Liao, T. Shi, M. Li, Z. Tang, and F. Xiong, “Thermoplastic deformation and structural evolutions in nanoimprinting metallic glasses using molecular dynamics analysis,” Journal of Non-crystalline Solids. 2015. link Times cited: 18 USED (high confidence) C. Y. Chuang, L. Zepeda-Ruiz, S. Han, and T. Sinno, “Direct molecular dynamics simulation of Ge deposition on amorphous SiO2 at experimentally relevant conditions,” Surface Science. 2015. link Times cited: 1 USED (high confidence) T. Araki et al., “Molecular Dynamics Study of Carbon Nanotubes/Polyamide Reverse Osmosis Membranes: Polymerization, Structure, and Hydration.,” ACS applied materials & interfaces. 2015. link Times cited: 56 Abstract: Carbon nanotubes/polyamide (PA) nanocomposite thin films hav… read moreAbstract: Carbon nanotubes/polyamide (PA) nanocomposite thin films have become very attractive as reverse osmosis (RO) membranes. In this work, we used molecular dynamics to simulate the influence of single walled carbon nanotubes (SWCNTs) in the polyamide molecular structure as a model case of a carbon nanotubes/polyamide nanocomposite RO membrane. It was found that the addition of SWCNTs decreases the pore size of the composite membrane and increases the Na and Cl ion rejection. Analysis of the radial distribution function of water confined in the pores of the membranes shows that SWCNT+PA nanocomposite membranes also exhibit smaller clusters of water molecules within the membrane, thus suggesting a dense membrane structure (SWCNT+PA composite membranes were 3.9% denser than bare PA). The results provide new insights into the fabrication of novel membranes reinforced with tubular structures for enhanced desalination performance. read less USED (high confidence) Q. Li, I. Duchemin, S. Xiong, G. Solomon, and D. Donadio, “Mechanical Tuning of Thermal Transport in a Molecular Junction,” Journal of Physical Chemistry C. 2015. link Times cited: 47 Abstract: Understanding and controlling heat transport in molecular ju… read moreAbstract: Understanding and controlling heat transport in molecular junctions would provide new routes to design nanoscale coupled electronic and phononic devices. Using first-principles full quantum calculations, we tune thermal conductance of a molecular junction by mechanically compressing and extending a short alkane chain connected to graphene leads. We find that the thermal conductance of the compressed junction drops by half in comparison to the extended junction, making it possible to turn on and off the heat current. The low conductance of the off state does not vary by further approaching the leads and stems from the suppression of the transmission of the in-plane transverse and longitudinal channels. Furthermore, we show that misalignment of the leads does not reduce the conductance ratio. These results also contribute to the general understanding of thermal transport in molecular junctions. read less USED (high confidence) T. Kehagias et al., “Nanostructure and strain properties of core-shell GaAs/AlGaAs nanowires,” Semiconductor Science and Technology. 2015. link Times cited: 7 Abstract: GaAs/AlGaAs core–shell nanowires (NWs) were grown on Si(111)… read moreAbstract: GaAs/AlGaAs core–shell nanowires (NWs) were grown on Si(111) by Ga-assisted molecular beam epitaxy via the vapor–liquid–solid mechanism. High-resolution and scanning transmission electron microscopy observations showed that NWs were predominantly zinc-blende single crystals of hexagonal shape, grown along the [111] direction. GaAs core NWs emerged from the Si surface and subsequently, the NW growth front advanced by a continuous sequence of (111) rotational twins, while the AlGaAs shell lattice was perfectly aligned with the core lattice. Occasionally, single or multiple stacking faults induced wurtzite structure NW pockets. The AlGaAs shell occupied at least half of the NW’s projected diameter, while the average Al content of the shell, estimated by energy dispersive x-ray analysis, was x = 0.35. Furthermore, molecular dynamics simulations of hexagonal cross-section NW slices, under a new parametrization of the Tersoff interatomic potential for AlAs, showed increased atom relaxation at the hexagon vertices of the shell. This, in conjunction with the compressively strained Al0.35Ga0.65As shell close to the GaAs core, can trigger a kinetic surface mechanism that could drive Al adatoms to accumulate at the relaxed sites of the shell, namely along the diagonals of the shell’s hexagon. Moreover, the absence of long-range stresses in the GaAs/Al0.35Ga0.65As core–shell system may account for a highly stable heterostructure. The latter was consolidated by temperature-dependent photoluminescence spectroscopy. read less USED (high confidence) J. Hwang, J. Ihm, K.-R. Lee, and S. Kim, “Computational Evaluation of Amorphous Carbon Coating for Durable Silicon Anodes for Lithium-Ion Batteries,” Nanomaterials. 2015. link Times cited: 5 Abstract: We investigate the structural, mechanical, and electronic pr… read moreAbstract: We investigate the structural, mechanical, and electronic properties of graphite-like amorphous carbon coating on bulky silicon to examine whether it can improve the durability of the silicon anodes of lithium-ion batteries using molecular dynamics simulations and ab-initio electronic structure calculations. Structural models of carbon coating are constructed using molecular dynamics simulations of atomic carbon deposition with low incident energies (1–16 eV). As the incident energy decreases, the ratio of sp2 carbons increases, that of sp3 decreases, and the carbon films become more porous. The films prepared with very low incident energy contain lithium-ion conducting channels. Also, those films are electrically conductive to supplement the poor conductivity of silicon and can restore their structure after large deformation to accommodate the volume change during the operations. As a result of this study, we suggest that graphite-like porous carbon coating on silicon will extend the lifetime of the silicon anodes of lithium-ion batteries. read less USED (high confidence) S. Das, A. Moitra, M. Bhattacharya, and A. Dutta, “Simulation of thermal stress and buckling instability in Si/Ge and Ge/Si core/shell nanowires,” Beilstein Journal of Nanotechnology. 2015. link Times cited: 4 Abstract: The present study employs the method of atomistic simulation… read moreAbstract: The present study employs the method of atomistic simulation to estimate the thermal stress experienced by Si/Ge and Ge/Si, ultrathin, core/shell nanowires with fixed ends. The underlying technique involves the computation of Young’s modulus and the linear coefficient of thermal expansion through separate simulations. These two material parameters are combined to obtain the thermal stress on the nanowires. In addition, the thermally induced stress is perceived in the context of buckling instability. The analysis provides a trade-off between the geometrical and operational parameters of the nanostructures. The proposed methodology can be extended to other materials and structures and helps with the prediction of the conditions under which a nanowire-based device might possibly fail due to elastic instability. read less USED (high confidence) B. Qiu, G. Chen, and Z. Tian, “Effects of Aperiodicity and Roughness on Coherent Heat Conduction in Superlattices,” Nanoscale and Microscale Thermophysical Engineering. 2015. link Times cited: 52 Abstract: Coherent phonon heat conduction has recently been confirmed … read moreAbstract: Coherent phonon heat conduction has recently been confirmed experimentally in superlattice structures. Such traveling coherent phonon waves in superlattices lead to a linear increase in thermal conductivity as the number of periods increases. For applications such as thermal insulation or thermoelectrics, minimization of the phonon coherent effect is desirable. In this work, we use molecular dynamics simulations to study how to control coherent heat conduction in superlattices (SLs). It is found that either aperiodic SLs or SLs with rough interfaces can significantly disrupt coherent heat conduction when the interface densities are high. For sample thickness less than 125 nm, aperiodic SLs with perfect interfaces are found to have the lowest thermal conductivity. We use the atomic Green’s function method to examine the phonon dynamics. The impact of either aperiodicity or interface roughness is attributed to reduced transmittance. Such impact diminishes as the interface density reduces. read less USED (high confidence) Y. Wang, C. Yang, Y. Cheng, and Y. Zhang, “A molecular dynamics study on thermal and mechanical properties of graphene–paraffin nanocomposites,” RSC Advances. 2015. link Times cited: 41 Abstract: Owing to the superior thermal conductivity of graphene, nano… read moreAbstract: Owing to the superior thermal conductivity of graphene, nanocomposites with graphene fillers dispersed in a polymer matrix become promising in thermal management applications, e.g. serving as thermal interface materials (TIMs) in high power microelectronic devices. However, the thermal conductivity of graphene-based nanocomposites is constrained by the high interfacial thermal resistance between the graphene fillers and polymer matrix. This research focuses on changing graphene–paraffin interfacial thermal transport by employing various treatment methods. Using molecular dynamics (MD) simulations, the effectiveness of hydrogenation, defecting and doping on reducing the graphene–paraffin interfacial thermal resistance is closely investigated. We found that the interfacial thermal resistance can be considerably reduced by the hydrogenation of graphene, while it is insensitive to defecting and doping. From the simulation results of the graphene–paraffin nanocomposites under tensile loading, a lower Young’s modulus and lower tensile strength are observed for the paraffin filled with hydrogenated graphene. The results clearly show that the hydrogenation of graphene exerts opposite effects on the thermal and mechanical properties of graphene–paraffin nanocomposites. Thus hydrogenation is suggested to be used wisely in the graphene–paraffin nanocomposite so as to improve its interfacial thermal conductance at the minimum cost of its mechanical strength. read less USED (high confidence) B. Lee and J.-S. Lee, “Thermal conductivity reduction in graphene with silicon impurity,” Applied Physics A. 2015. link Times cited: 14 USED (high confidence) J. Kang and Z. Hwang, “Position-dependent mechanical responses of nanoindented graphene nanoribbons: Molecular dynamics study,” Journal of the Korean Physical Society. 2015. link Times cited: 4 Abstract: We performed MD simulations of nanoindentation on a single l… read moreAbstract: We performed MD simulations of nanoindentation on a single layer graphene nanoribbon in order to obtain the tip-position-dependent mechanical properties of the graphene nanoribbon. A correlation between the load and the indentation depth was constructed. Also, the bending rigidity, the Young’s modulus and the strength of the graphene nanoribbon were obtained. Our results yielded the tip position dependence of the Young’s modulus for the graphene nanoribbon. The Young’s modulus of the graphene nanoribbon was calculated by using the lowest value when the tip’s position was in the center region of the graphene nanoribbon, and as the tip’s position moved away from the center, the Young’s modulus increased. These results gave interesting insight as to why the Young’s moduli obtained from experiments were different from one another. The change in the mechanical properties of the graphene nanoribbon due to the change in the tip’s position can also lead to a novel graphene-based nanoelectromechanical device. read less USED (high confidence) L. Xiang, S. Ma, F. Wang, and K. Zhang, “Nanoindentation models and Young’s modulus of few-layer graphene: a molecular dynamics simulation study,” Journal of Physics D: Applied Physics. 2015. link Times cited: 22 Abstract: This study reports the molecular dynamics simulation of mult… read moreAbstract: This study reports the molecular dynamics simulation of multilayer graphene to investigate the influence of deflection, layers, temperature and stack patterns on the determination of Young’s modulus using nanoindentation models. Results reveal that the Young’s modulus of graphene is not consistent under different strain scopes, with the value being much larger in small deflection scopes. However, the values of Young’s modulus of multilayer graphene were rather consistent irrespective of the different stack patterns. Conversely, the relationship between Young’s modulus and temperature is almost linear in the region of 300–1000 K, with the value of Young’s modulus increasing proportionally with temperature. The derived value of Young’s modulus is about 1.00 TPa for multilayer graphene, in good agreement with monolayer graphene and close to the measured values of some experiments. read less USED (high confidence) Q. Xiong and X. Tian, “Atomistic simulations of interfacial mechanical characteristics of carbon nanotube/silicon nanocomposites,” Molecular Simulation. 2015. link Times cited: 13 Abstract: The interfacial mechanical properties of carbon nanotube (CN… read moreAbstract: The interfacial mechanical properties of carbon nanotube (CNT)-reinforced silicon nanocomposites are investigated by using molecular dynamics simulation method. The hybrid potential that includes Tersoff_2 potential for Si–Si in the silicon matrix, AIREBO potential for C–C in the CNTs and the Lennard-Jones (LJ) potential for Si–C in the interface is used in the nanocomposite system. The effects of such parameters as the CNT chirality, the CNT diameter and the CNT embedded length, the defects (Vacancy defects, Stone–Wales defects), the size of model, the temperature, the bonding strength and the cut-off distance of the interfacial LJ potential of nanocomposites on the pull force and the average interfacial shear strength (ISS) are investigated and discussed. The results show that the toughness and the maximum tensile strength have been increased significantly by adding the CNTs into the Si matrix. Also by increasing the LJ bonding strength and the cut-off distance of the LJ potential, the pull force and the ISS are increased significantly. The CNT chirality, the CNT diameter and the CNT embedded length have a great influence on the pull force and the ISS, while the effects of temperature, the defects and the size of model are very slight. read less USED (high confidence) E. Koukaras, G. Kalosakas, C. Galiotis, and K. Papagelis, “Phonon properties of graphene derived from molecular dynamics simulations,” Scientific Reports. 2015. link Times cited: 103 USED (high confidence) S. Kida, M. Yamamoto, K. Tada, H. Kawata, Y. Hirai, and M. Yasuda, “Correlation between electron-irradiation defects and applied stress in graphene: A molecular dynamics study,” Journal of Vacuum Science and Technology. 2015. link Times cited: 5 Abstract: Molecular dynamics (MD) simulations are performed to study t… read moreAbstract: Molecular dynamics (MD) simulations are performed to study the correlation between electron irradiation defects and applied stress in graphene. The electron irradiation effect is introduced by the binary collision model in the MD simulation. By applying a tensile stress to graphene, the number of adatom-vacancy (AV) and Stone–Wales (SW) defects increase under electron irradiation, while the number of single-vacancy defects is not noticeably affected by the applied stress. Both the activation and formation energies of an AV defect and the activation energy of an SW defect decrease when a tensile stress is applied to graphene. Applying tensile stress also relaxes the compression stress associated with SW defect formation. These effects induced by the applied stress cause the increase in AV and SW defect formation under electron irradiation. read less USED (high confidence) S. D. Nath, “Thermal decomposition and desorption of PFPE Zdol on a DLC substrate using quartic bond interaction potential,” RSC Advances. 2015. link Times cited: 1 Abstract: In heat assisted magnetic recording (HAMR) system, heating o… read moreAbstract: In heat assisted magnetic recording (HAMR) system, heating of the hard disk magnetic layer is carried out by applying laser rays during the movement of the read/write head over the carbon overcoat for the purpose of reading and writing on its magnetic layer. Depletion of PFPE Zdol occurs because of thermal decomposition and desorption on a DLC substrate due to laser heating and this model is developed using the coarse-grained bead spring based on quartic and van der Waals interaction potential. The effects of temperature on the bond breaking phenomenon of PFPE Zdol due to thermal decomposition and thermal desorption were studied. To support the reliability of the present simulation results by a quartic potential, the end bead density and total bead density on a DLC substrate obtained by the finitely extensible non-linear elastic (FENE) and quartic potential are shown in a comparative manner. read less USED (high confidence) W. Liang, X. Zhi-Cheng, Z. Dong-qin, Z. Wei, and Z. Wei-rong, “Heat Transport in Double-Bond Linear Chains of Fullerenes*,” Chinese Physics Letters. 2015. link Times cited: 1 Abstract: Heat transport in one kind of double-bond linear chains of f… read moreAbstract: Heat transport in one kind of double-bond linear chains of fullerenes (C60's) is investigated by the classical nonequilibrium molecular dynamics method. It is found that the negative differential thermal resistance (NDTR) is more likely to occur at larger temperature difference and shorter length. In addition, with the increase of the length, the thermal conductivity of the chains increases, and NDTR region shrinks and vanishes in the end. The temperature profiles reveal that a large temperature jump exists at a high-temperature boundary of the chains when NDTR occurs. These results may be helpful for designing thermal devices where low-dimensional C60 polymers can be used. read less USED (high confidence) B. Ramos-Alvarado, S. Kumar, and G. Peterson, “Wettability of graphitic-carbon and silicon surfaces: MD modeling and theoretical analysis.,” The Journal of chemical physics. 2015. link Times cited: 41 Abstract: The wettability of graphitic carbon and silicon surfaces was… read moreAbstract: The wettability of graphitic carbon and silicon surfaces was numerically and theoretically investigated. A multi-response method has been developed for the analysis of conventional molecular dynamics (MD) simulations of droplets wettability. The contact angle and indicators of the quality of the computations are tracked as a function of the data sets analyzed over time. This method of analysis allows accurate calculations of the contact angle obtained from the MD simulations. Analytical models were also developed for the calculation of the work of adhesion using the mean-field theory, accounting for the interfacial entropy changes. A calibration method is proposed to provide better predictions of the respective contact angles under different solid-liquid interaction potentials. Estimations of the binding energy between a water monomer and graphite match those previously reported. In addition, a breakdown in the relationship between the binding energy and the contact angle was observed. The macroscopic contact angles obtained from the MD simulations were found to match those predicted by the mean-field model for graphite under different wettability conditions, as well as the contact angles of Si(100) and Si(111) surfaces. Finally, an assessment of the effect of the Lennard-Jones cutoff radius was conducted to provide guidelines for future comparisons between numerical simulations and analytical models of wettability. read less USED (high confidence) J. Kioseoglou et al., “Structural and electronic properties of GaN nanowires with embedded InxGa1−xN nanodisks,” Journal of Applied Physics. 2015. link Times cited: 11 Abstract: In the present study, the effects of various types of strain… read moreAbstract: In the present study, the effects of various types of strain and indium concentration on the total energy and optoelectronic properties of GaN nanowires (NWs) with embedded InxGa1−xN nanodisks (NDs) are examined. In particular, the bi-axial, hydrostatic, and uniaxial strain states of the embedded InxGa1−xN NDs are investigated for multiple In concentrations. Density functional theory is employed to calculate the band structure of the NWs. The theoretical analysis finds that the supercell-size-dependent characteristics calculated for our 972-atom NW models are very close to the infinite supercell-size limit. It is established that the embedded InxGa1−xN NDs do not induce deep states in the band gap of the NWs. A bowing parameter of 1.82 eV is derived from our analysis in the quadratic Vegard's formula for the band gaps at the various In concentrations of the investigated InxGa1−xN NDs in GaN NW structures. It is concluded that up to ∼10% of In, the hydrostatic strain state is competitive with the bi-axial ... read less USED (high confidence) K. Mylvaganam and L. Zhang, “Effect of crystal orientation on the formation of bct-5 silicon,” Applied Physics A. 2015. link Times cited: 23 USED (high confidence) A. Chernatynskiy and S. Phillpot, “Phonon Transport Simulator (PhonTS),” Comput. Phys. Commun. 2015. link Times cited: 55 USED (high confidence) L. Zhang, W. Wu, H. Ren, J. Dong, Y. Liu, and H. Li, “Structural evolution of a Si melt in nanoscale confined space,” RSC Advances. 2015. link Times cited: 2 Abstract: Molecular dynamics (MD) simulations are performed to systema… read moreAbstract: Molecular dynamics (MD) simulations are performed to systematically study the structural evolution of a Si melt confined in nanoscale space. The freezing Si structure at 300 K is stratification which is composed of a stable crystalline shell and a metastable glassy core. Due to the spatial restriction effect, the confined structure consists of higher-coordinated clusters compared to the bulk Si. It is revealed that the statistical average of the ordered shell and the disordered core gives rise to the split of the second peak of the pair distribution function curves of the Si melt. Moreover, increasing the cavity size is detrimental to the stability of the layered configuration of the confined melt and increasing the cooling rate mainly influences the arrangement of Si atoms adjacent to the SWCNT wall. Interestingly, we also find that the cylindric cavity is more beneficial than the square one in inducing the formation of long-range crystalline order in nanoscale space. read less USED (high confidence) P. López, I. Santos, M. Aboy, L. Marqués, and L. Pelaz, “A detailed approach for the classification and statistical analysis of irradiation induced defects,” Nuclear Instruments & Methods in Physics Research Section B-beam Interactions With Materials and Atoms. 2015. link Times cited: 3 USED (high confidence) V. Polukhin and N. Vatolin, “Stability and thermal evolution of transition metal and silicon clusters,” Russian Chemical Reviews. 2015. link Times cited: 18 Abstract: The results of computer simulation studies of transition met… read moreAbstract: The results of computer simulation studies of transition metal and silicon clusters published in the last decade are summarized. Comparative analysis of the stability and thermal evolution of nanoclusters is performed depending on the preparation method, type of bonds, atom packing, coherence of the constituent nanofragments, surface morphology and change in the relationship between the short- and long-range ordering with increasing size. Taking account of the substrate nature and dimensionality of the cluster disperse systems being simulated, most important structure-dependent kinetic and mechanical characteristics are discussed, including specific temperature ranges of disordering corresponding to isomerization and quasi-melting. The bibliography includes 263 references. read less USED (high confidence) L. Bai et al., “Friction between silicon and diamond at the nanoscale,” Journal of Physics D: Applied Physics. 2015. link Times cited: 31 Abstract: This work investigates the nanoscale friction between diamon… read moreAbstract: This work investigates the nanoscale friction between diamond-structure silicon (Si) and diamond via molecular dynamics simulation. The interaction between the interfaces is considered as strong covalent bonds. The effects of load, sliding velocity, temperature and lattice orientation are investigated. Results show that the friction can be divided into two stages: the static friction and the kinetic friction. During the static friction stage, the load, lattice orientation and temperature dramatically affects the friction by changing the elastic limit of Si. Large elastic deformation is induced in the Si block, which eventually leads to the formation of a thin layer of amorphous Si near the Si-diamond interface and thus the beginning of the kinetic friction stage. During the kinetic friction stage, only temperature and velocity have an effect on the friction. The investigation of the microstructural evolution of Si demonstrated that the kinetic friction can be categorized into two modes (stick-slip and smooth sliding) depending on the temperature of the fracture region. read less USED (high confidence) S. Bringuier, V. Manga, K. Runge, P. Deymier, and K. Muralidharan, “Grain boundary dynamics of SiC bicrystals under shear deformation,” Materials Science and Engineering A-structural Materials Properties Microstructure and Processing. 2015. link Times cited: 10 USED (high confidence) A. Sgouros, G. Kalosakas, M. Sigalas, and K. Papagelis, “Exotic carbon nanostructures obtained through controllable defect engineering,” RSC Advances. 2015. link Times cited: 8 Abstract: We numerically demonstrate the spontaneous formation of vari… read moreAbstract: We numerically demonstrate the spontaneous formation of various 3D carbon nanostructures, like multi-tube carbon nanotubes, nanopyramids, nanocubes, artificially rippled graphene, and other exotic nanomaterials, starting from graphene nanoribbons and inducing controllably engineered defects consisting of carbon adatoms or inverse Stone–Wales defects. The evolution of the initial defected planar structures towards the final 3D nanoarchitectures is obtained through molecular dynamics simulations, using different force fields to ensure the reproducibility of the derived results. The presented carbon nanostructures of different shapes, sizes, and morphologies, can be used in applications ranging from storage of hydrogen or other molecules, enhanced chemical reactions or catalysis in confined compartments, to drug delivery nanodevices and biosensors. read less USED (high confidence) S. Neogi et al., “Tuning thermal transport in ultrathin silicon membranes by surface nanoscale engineering.,” ACS nano. 2015. link Times cited: 105 Abstract: A detailed understanding of the connections of fabrication a… read moreAbstract: A detailed understanding of the connections of fabrication and processing to structural and thermal properties of low-dimensional nanostructures is essential to design materials and devices for phononics, nanoscale thermal management, and thermoelectric applications. Silicon provides an ideal platform to study the relations between structure and heat transport since its thermal conductivity can be tuned over 2 orders of magnitude by nanostructuring. Combining realistic atomistic modeling and experiments, we unravel the origin of the thermal conductivity reduction in ultrathin suspended silicon membranes, down to a thickness of 4 nm. Heat transport is mostly controlled by surface scattering: rough layers of native oxide at surfaces limit the mean free path of thermal phonons below 100 nm. Removing the oxide layers by chemical processing allows us to tune the thermal conductivity over 1 order of magnitude. Our results guide materials design for future phononic applications, setting the length scale at which nanostructuring affects thermal phonons most effectively. read less USED (high confidence) M. Amato and R. Rurali, “Shell-Thickness Controlled Semiconductor-Metal Transition in Si-SiC Core-Shell Nanowires.,” Nano letters. 2015. link Times cited: 13 Abstract: We study Si-SiC core-shell nanowires by means of electronic … read moreAbstract: We study Si-SiC core-shell nanowires by means of electronic structure first-principles calculations. We show that the strain induced by the growth of a lattice-mismatched SiC shell can drive a semiconductor-metal transition, which in the case of ultrathin Si cores is already observed for shells of more than one monolayer. Core-shell nanowires with thicker cores, however, remain semiconducting even when four SiC monolayers are grown, paving the way to versatile, biocompatible nanowire-based sensors. read less USED (high confidence) N. D. Palavalli, A. Yaghoubi, C.-chung Lai, C. Tin, A. Javey, and Y. Chueh, “Catalyst-dependent morphological evolution by interfacial stress in crystalline–amorphous core–shell germanium nanowires,” RSC Advances. 2015. link Times cited: 1 Abstract: Directing the morphological evolution of one-dimensional mat… read moreAbstract: Directing the morphological evolution of one-dimensional materials in order to tune their properties for a variety of practical applications in optical sensing and solar cells is an ongoing effort. Here, we establish a systematic method for exerting control over the morphology of nanowires (NWs) grown via a vapour–solid–solid (VSS) process from different metal catalysts. We use germanium, a technologically important material, to demonstrate how catalysts influence the axial growth rate of a crystalline core against the lateral vapour deposition of an amorphous shell which in turn deforms the NWs into straight, tapered or spiral geometries due to interfacial stress. Finite element method (FEM) and molecular dynamic (MD) simulations are further utilized to confirm the proposed mechanism of deformation in crystalline–amorphous core–shell NWs. read less USED (high confidence) M. Li, J. Zhang, X. Hu, and Y. Yue, “Thermal transport across graphene/SiC interface: effects of atomic bond and crystallinity of substrate,” Applied Physics A. 2015. link Times cited: 56 USED (high confidence) P. Jiang et al., “Enhanced thermoelectric performance of carbon nanotubes at elevated temperature.,” Physical chemistry chemical physics : PCCP. 2015. link Times cited: 8 Abstract: The electronic and transport properties of the (10, 0) singl… read moreAbstract: The electronic and transport properties of the (10, 0) single-walled carbon nanotube are studied by performing first-principles calculations and semi-classical Boltzmann theory. It is found that the (10, 0) tube exhibits a considerably large Seebeck coefficient and electrical conductivity which are highly desirable for good thermoelectric materials. Together with the lattice thermal conductivity predicted by non-equilibrium molecular dynamics simulations, the room temperature ZT value of the (10, 0) tube is estimated to be 0.15 for p-type carriers. Moreover, the ZT value exhibits strong temperature dependence and can reach to 0.77 at 1000 K. Such a ZT value can be further enhanced to as high as 1.9 by isotopic substitution and chemisorptions of hydrogen on the tube surface. read less USED (high confidence) W. Bing, G. Bin, P. Rongying, Z. Sijia, and S. Jianhua, “Molecular dynamics study on splitting of hydrogen-implanted silicon in Smart-Cut? technology,” Journal of Semiconductors. 2015. link Times cited: 1 Abstract: Defect evolution in a single crystal silicon which is implan… read moreAbstract: Defect evolution in a single crystal silicon which is implanted with hydrogen atoms and then annealed is investigated in the present paper by means of molecular dynamics simulation. By introducing defect density based on statistical average, this work aims to quantitatively examine defect nucleation and growth at nanoscale during annealing in Smart-Cut® technology. Research focus is put on the effects of the implantation energy, hydrogen implantation dose and annealing temperature on defect density in the statistical region. It is found that most defects nucleate and grow at the annealing stage, and that defect density increases with the increase of the annealing temperature and the decrease of the hydrogen implantation dose. In addition, the enhancement and the impediment effects of stress field on defect density in the annealing process are discussed. read less USED (high confidence) C. Wang, Q. Han, and D. Xin, “Fracture analysis of single-layer graphene sheets with edge crack under tension,” Molecular Simulation. 2015. link Times cited: 8 Abstract: In this study, the fracture of single-layered graphene sheet… read moreAbstract: In this study, the fracture of single-layered graphene sheets (SLGSs) with edge crack under simple tension is investigated using molecular dynamics simulations, and the variations in fracture strength of SLGSs with crack length, strain rate and temperature are analysed. It is found that the existing edge crack weakens mechanical properties of SLGSs. Fracture strength and strain decrease with the increase in crack length and temperature, but increase with the increase in strain rate. It is also shown that shorter initial cracks propagate faster than longer initial cracks, but shorter initial cracks begin propagating at higher axial strain at a certain temperature and strain rate. And cracks are found to propagate faster in higher strain rates. read less USED (high confidence) C. David et al., “Nonlinear effects in defect production by atomic and molecular ion implantation,” Journal of Applied Physics. 2015. link Times cited: 4 Abstract: This report deals with studies concerning vacancy related de… read moreAbstract: This report deals with studies concerning vacancy related defects created in silicon due to implantation of 200 keV per atom aluminium and its molecular ions up to a plurality of 4. The depth profiles of vacancy defects in samples in their as implanted condition are carried out by Doppler broadening spectroscopy using low energy positron beams. In contrast to studies in the literature reporting a progressive increase in damage with plurality, implantation of aluminium atomic and molecular ions up to Al3, resulted in production of similar concentration of vacancy defects. However, a drastic increase in vacancy defects is observed due to Al4 implantation. The observed behavioural trend with respect to plurality has even translated to the number of vacancies locked in vacancy clusters, as determined through gold labelling experiments. The impact of aluminium atomic and molecular ions simulated using MD showed a monotonic increase in production of vacancy defects for cluster sizes up to 4. The trend in damage... read less USED (high confidence) C.-ying Wang et al., “Multi-scale simulation of the stability and diffusion of lithium in the presence of a 90° partial dislocation in silicon,” Journal of Applied Physics. 2014. link Times cited: 5 Abstract: The stable positions, binding energies, and dynamic properti… read moreAbstract: The stable positions, binding energies, and dynamic properties of Li impurity in the presence of a 90° partial dislocation in Si have been studied by using the multi-scale simulation method. The corresponding results are compared with the defect-free Si crystal in order to reflect how the dislocation defect affects the performances of Li-ion batteries (LIBs) at the atomic level. It is found that the inserted Li atom in the dislocation core and nearest regions is more stable, since the binding energies are 0.13 eV to 0.52 eV larger than the bulk Si. Moreover, it is easier for Li atom to diffuse into those defect areas and harder to diffuse out. Thus, Li dopant may tend to congregate in the dislocation core and nearest regions. On the other side, the 90° partial dislocation can glide in the {111} plane accompanied by the diffusion of Li impurity along the pentagon ring of core. In addition, the spacious heptagon ring of dislocation core can lower the migration barrier of Li atom from 0.63 eV to 0.34 eV, whi... read less USED (high confidence) J. Brahmanandam, M. Ajmalghan, R. Abhilash, D. Mahapatra, M. Rahaman, and G. Hegde, “Optoelectronic properties of graphene silicon nano-texture,” 2014 IEEE 2nd International Conference on Emerging Electronics (ICEE). 2014. link Times cited: 0 Abstract: Graphene on silicon with silicon dioxide quantum dots is a p… read moreAbstract: Graphene on silicon with silicon dioxide quantum dots is a promising opto-electronic material. The optical band gap and the corresponding optical conductivity are estimated using the density functional approach with the combination of molecular dynamics. The regular repeating unit cell of graphene silicon nano-texture is identified using the classical molecular dynamics simulations. Electronic calculations predict the optical band gap is around 0.2 eV and the optical conductivity is identified to be 0.3 times the quantum conductance. read less USED (high confidence) W.-X. Zhou and K. Chen, “Enhancement of Thermoelectric Performance by Reducing Phonon Thermal Conductance in Multiple Core-shell Nanowires,” Scientific Reports. 2014. link Times cited: 39 USED (high confidence) A. Galashev and O. Rakhmanova, “Formation of a copper film on the graphene surface: A molecular dynamic study,” Russian Journal of Physical Chemistry B. 2014. link Times cited: 1 USED (high confidence) A. Sgouros, M. Neupane, M. Sigalas, N. Aravantinos-Zafiris, and R. Lake, “Nanoscale phononic interconnects in THz frequencies.,” Physical chemistry chemical physics : PCCP. 2014. link Times cited: 8 Abstract: Phononic computing is emerging as an alternative computing p… read moreAbstract: Phononic computing is emerging as an alternative computing paradigm to the conventional electronic and optical computing. In this study, we propose and analyze various phononic interconnects, such as nano-scaled phononic resonators, waveguides and switches, on the 〈111〉 surface of 3C-SiC and 3C-GeSi with substitutional and vacancy defects. This is achieved by simultaneously introducing defects of various types, and by varying their specific locations on the surface. To calculate the intrinsic and the defect-induced vibrational properties, such as the phononic bandgap and the variation in the phonon spectra, the total phonon density of states (TPDOS) and the partial phonon density of states (PPDOS) were calculated using molecular dynamics simulations with semi-empirical potentials. The proposed phononic interconnects, in conjunction with electronic and/or photonic interconnects, can be used in the current and future devices. read less USED (high confidence) M. Yamamoto, Y. Asayama, M. Yasuda, H. Kawata, and Y. Hirai, “Defect formation and transformation in graphene under electron irradiation: A molecular dynamics study,” Journal of Vacuum Science & Technology. B. Nanotechnology and Microelectronics: Materials, Processing, Measurement, and Phenomena. 2014. link Times cited: 5 Abstract: Molecular dynamics simulations were performed to study defec… read moreAbstract: Molecular dynamics simulations were performed to study defect formation and transformation in graphene under electron irradiation. The single-vacancy was the most frequently formed defect and the number of defects did not depend on the defect formation energy for normal incidence. The single-vacancy transformed to other types of defects and migrated in graphene by heating. The recovery energies of adatom-vacancy and pentagon–heptagon defects were relatively small. The Stone–Wales defect was the most stable, and did not easily recover. In the single atomic chain formation process from graphene by electron irradiation, competition between defect formation by electron collision and the recovery by heating was observed. read less USED (high confidence) M. Stockett et al., “Fragmentation of anthracene C₁₄H₁₀, acridine C₁₃H₉N and phenazine C₁₂H₈N₂ ions in collisions with atoms.,” Physical chemistry chemical physics : PCCP. 2014. link Times cited: 21 Abstract: We report experimental total, absolute, fragmentation cross … read moreAbstract: We report experimental total, absolute, fragmentation cross sections for anthracene C14H10, acridine C13H9N, and phenazine C12H8N2 ions colliding with He at center-of-mass energies close to 100 eV. In addition, we report results for the same ions colliding with Ne, Ar, and Xe at higher energies. The total fragmentation cross sections for these three ions are the same within error bars for a given target. The measured fragment mass distributions reveal significant contributions from both delayed (≫10(-12) s) statistical fragmentation processes as well as non-statistical, prompt (∼10(-15) s), single atom knockout processes. The latter dominate and are often followed by secondary statistical fragmentation. Classical Molecular Dynamics (MD) simulations yield separate cross sections for prompt and delayed fragmentation which are consistent with the experimental results. The intensity of the single C/N-loss peak, the signature of non-statistical fragmentation, decreases with the number of N atoms in the parent ion. The fragment intensity distributions for losses of more than one C or N atom are rather similar for C14H10 and C13H9N but differ strongly for C12H8N2 where weak C-N bonds often remain in the fragments after the first fragmentation step. This greatly increases their probability to fragment further. Distributions of internal energy remaining in the fragments after knockout are obtained from the MD simulations. read less USED (high confidence) X. Tan, H. Shao, Y. Wen, H. Liu, and G. Liu, “Three-dimensional hybridized carbon networks for high performance thermoelectric applications,” RSC Advances. 2014. link Times cited: 0 Abstract: Thermoelectric properties of three-dimensional covalently co… read moreAbstract: Thermoelectric properties of three-dimensional covalently connected carbon networks are investigated by using first-principles calculation, Boltzmann transport theory, and nonequilibrium molecular dynamics simulations. It is found that the electronic transport of such networks exhibit "ballistic transport" behavior, similar to single carbon nanotubes. The thermoelectric performance of network structures is significantly enhanced relative to one-dimensional carbon nanotubes, owing to the high power factor and largely reduced thermal conductivity. The ZT value of carbon network (9,0) at intermediate temperature can be increased to 0.78 by n-type doping with a carrier concentration of 3.9 x 10(19) cm(-3). Therefore carbon networks are expected to be potential candidates for eco-friendly thermoelectric materials. read less USED (high confidence) M.-H. Liu, L. Qiu, X. Zheng, J. Zhu, and D. Tang, “Study on the thermal resistance in secondary particles chain of silica aerogel by molecular dynamics simulation,” Journal of Applied Physics. 2014. link Times cited: 9 Abstract: In this article, molecular dynamics simulation was performed… read moreAbstract: In this article, molecular dynamics simulation was performed to study the heat transport in secondary particles chain of silica aerogel. The two adjacent particles as the basic heat transport unit were modelled to characterize the heat transfer through the calculation of thermal resistance and vibrational density of states (VDOS). The total thermal resistance of two contact particles was predicted by non-equilibrium molecular dynamics simulations (NEMD). The defects were formed by deleting atoms in the system randomly first and performing heating and quenching process afterwards to achieve the DLCA (diffusive limited cluster-cluster aggregation) process. This kind of treatment showed a very reasonable prediction of thermal conductivity for the silica aerogels compared with the experimental values. The heat transport was great suppressed as the contact length increased or defect concentration increased. The constrain effect of heat transport was much significant when contact length fraction was in the small range ( 0.5). Also, as the contact length increased, the role of joint thermal resistance played in the constraint of heat transport was increasing. However, the defect concentration did not affect the share of joint thermal resistance as the contact length did. VDOS of the system was calculated by numerical method to characterize the heat transport from atomic vibration view. The smaller contact length and greater defect concentration primarily affected the longitudinal acoustic modes, which ultimately influenced the heat transport between the adjacent particles. read less USED (high confidence) J. Wei et al., “Theoretical study of the thermoelectric properties of SiGe nanotubes,” RSC Advances. 2014. link Times cited: 12 Abstract: The thermoelectric properties of two typical SiGe nanotubes … read moreAbstract: The thermoelectric properties of two typical SiGe nanotubes are investigated using a combination of density functional theory, Boltzmann transport theory, and molecular dynamics simulations. Unlike carbon nanotubes, these SiGe nanotubes tend to have gear-like geometry, and both the (6, 6) and (10, 0) tubes are semiconducting with direct band gaps. The calculated Seebeck coefficients as well as the relaxation time of these SiGe nanotubes are significantly larger than those of bulk thermoelectric materials. Together with smaller lattice thermal conductivity caused by phonon boundary and alloy scattering, these SiGe nanotubes can exhibit very good thermoelectric performance. Moreover, there are strong chirality, temperature and diameter dependences of the ZT values, which can be optimized to 4.9 at room temperature and further enhanced to 5.4 at 400 K for the armchair (6, 6) tube. read less USED (high confidence) S. Broderick, U. Ray, S. Srinivasan, K. Rajan, and G. Balasubramanian, “An informatics based analysis of the impact of isotope substitution on phonon modes in graphene,” Applied Physics Letters. 2014. link Times cited: 19 Abstract: It is shown by informatics that the high frequency short ran… read moreAbstract: It is shown by informatics that the high frequency short ranged modes exert a significant influence in impeding thermal transport through isotope substituted graphene nanoribbons. Using eigenvalue decomposition methods, we have extracted features in the phonon density of states spectra that reveal correlations between isotope substitution and phonon modes. This study also provides a data driven computational framework for the linking of materials chemistry and transport properties in 2D systems. read less USED (high confidence) A. Galashev and O. Rakhmanova, “Numerical simulation of heating an aluminum film on two-layer graphene,” High Temperature. 2014. link Times cited: 14 USED (high confidence) J. Kang and K. Lee, “Engineering the resonance frequency of carbon-nanotube oscillators via a telescoping outertube,” Journal of the Korean Physical Society. 2014. link Times cited: 0 Abstract: Nanoelectromechanical systems (NEMSs) based on carbon nanotu… read moreAbstract: Nanoelectromechanical systems (NEMSs) based on carbon nanotubes (CNTs) enjoy the considerable interest of researchers for various applications. In particular, CNT oscillators have attracted much attention for applications such as ultrafast optical filters and nanosensors. Here, we investigated the resonance frequencies of CNT oscillators with a telescoping outertube via molecular dynamics simulations. Their resonance frequencies could be engineered by changing the telescoping length of the outertube, and the distributions vs. the telescoping length could be fitted by using a normal distribution. While the maximum resonance frequencies were maintained with the same initial velocity, they could be changed by adjusting the telescoping length of the outertube. Engineering the resonance frequency of CNT oscillators via telescoping outertube as a controllable parameter can provide an advanced feature for CNT oscillators to be utilized as NEMS components. read less USED (high confidence) H.-J. Huang, H.-Y. Chen, C.-C. Lee, and C. Y. C. Chen, “Computational Design of Apolipoprotein E4 Inhibitors for Alzheimer’s Disease Therapy from Traditional Chinese Medicine,” BioMed Research International. 2014. link Times cited: 14 Abstract: Apolipoprotein E4 (Apo E4) is the major genetic risk factor … read moreAbstract: Apolipoprotein E4 (Apo E4) is the major genetic risk factor in the causation of Alzheimer's disease (AD). In this study we utilize virtual screening of the world's largest traditional Chinese medicine (TCM) database and investigate potential compounds for the inhibition of ApoE4. We present the top three TCM candidates: Solapalmitine, Isodesacetyluvaricin, and Budmunchiamine L5 for further investigation. Dynamics analysis and molecular dynamics (MD) simulation were used to simulate protein-ligand complexes for observing the interactions and protein variations. Budmunchiamine L5 did not have the highest score from virtual screening; however, the dynamics pose is similar to the initial docking pose after MD simulation. Trajectory analysis reveals that Budmunchiamine L5 was stable over all simulation times. The migration distance of Budmunchiamine L5 illustrates that docked ligands are not variable from the initial docked site. Interestingly, Arg158 was observed to form H-bonds with Budmunchiamine L5 in the docking pose and MD snapshot, which indicates that the TCM compounds could stably bind to ApoE4. Our results show that Budmunchiamine L5 has good absorption, blood brain barrier (BBB) penetration, and less toxicity according to absorption, distribution, metabolism, excretion, and toxicity (ADMET) prediction and could, therefore, be safely used for developing novel ApoE4 inhibitors. read less USED (high confidence) S. E. Boulfelfel, D. Selli, and S. Leoni, “Novel Carbons: Habits and Oddities,” Zeitschrift für anorganische und allgemeine Chemie. 2014. link Times cited: 5 Abstract: Carbon is a surprising material in all respects. In this Rev… read moreAbstract: Carbon is a surprising material in all respects. In this Review, we present results of metadynamics calculations for crystal structure prediction of novel carbon polymorphs with even and odd rings. So-called superhard graphite results from cold-compressing graphite. We review the results of molecular dynamics simulations on the graphite-to-diamond phase transition, that yields Oganov's M-carbon. The latter, like some of the modifications predicted by metadynamics, features five- and seven-membered odd rings. We identify the role of odd rings at times of phase nucleation, and we speculate on the preference for odd-membered rings over even motifs in a context of nucleation and phase growth. read less USED (high confidence) M. Yoshimoto, K. Mochiji, K. Moritani, and N. Inui, “Structural and dynamical properties of the junction between a single carbon nanotube and a graphene nanoribbon,” Japanese Journal of Applied Physics. 2014. link Times cited: 0 Abstract: Using molecular dynamics (MD) simulation, we consider the st… read moreAbstract: Using molecular dynamics (MD) simulation, we consider the stable structure of a partially unzipped carbon nanotube, in which a graphene nanoribbon is formed at the tip. We characterize the shape of the junction between a single carbon nanotube and a graphene nanoribbon using three parameters: the radius of curvature, bend, and twist-rotation. The increase in the radius of curvature is proportional to the square of the distance from the boundary between the carbon nanotube and the graphene nanoribbon, and this can be explained by using continuous mechanics for a thin plate. The oscillations of the graphene nanoribbon at room temperature are also taken into consideration. read less USED (high confidence) X. Liu, G. Zhang, Q. Pei, and Y.-W. Zhang, “Modulating the thermal conductivity of silicon nanowires via surface amorphization,” Science China Technological Sciences. 2014. link Times cited: 12 USED (high confidence) X. Liu, G. Zhang, Q. Pei, and Y. Zhang, “Modulating the thermal conductivity of silicon nanowires via surface amorphization,” Science China Technological Sciences. 2014. link Times cited: 0 USED (high confidence) B. Javvaji, A. Ravikumar, B. M. Shenoy, D. R. Mahapatra, M. R. Rahman, and G. Hegde, “Electronic band structure and photoemission spectra of graphene on silicon substrate,” Photonics West - Optoelectronic Materials and Devices. 2014. link Times cited: 2 Abstract: Synergizing graphene on silicon based nanostructures is pivo… read moreAbstract: Synergizing graphene on silicon based nanostructures is pivotal in advancing nano-electronic device technology. A combination of molecular dynamics and density functional theory has been used to predict the electronic energy band structure and photo-emission spectrum for graphene-Si system with silicon as a substrate for graphene. The equilibrium geometry of the system after energy minimization is obtained from molecular dynamics simulations. For the stable geometry obtained, density functional theory calculations are employed to determine the energy band structure and dielectric constant of the system. Further the work function of the system which is a direct consequence of photoemission spectrum is calculated from the energy band structure using random phase approximations. read less USED (high confidence) S. Cea et al., “Process modeling for advanced device technologies,” Journal of Computational Electronics. 2014. link Times cited: 8 USED (high confidence) D. Georgakaki, O. G. Ziogos, and H. Polatoglou, “Vibrational and mechanical properties of Si/Ge nanowires as resonators: A molecular dynamics study,” physica status solidi (a). 2014. link Times cited: 22 Abstract: In this work, we examine the vibrational and mechanical prop… read moreAbstract: In this work, we examine the vibrational and mechanical properties of clamped‐clamped rectangular SixGe1−x and Si/SixGe1−x nanowires (NWs) using molecular dynamics simulations. A virtual atomic force microscope nanotip is used to drive the vibration. The frequency response, the beat vibration phenomenon and the calculation of mechanical properties such as quality factor Q and Young's modulus E are thoroughly analyzed. The influence of added mass and hydrogen passivation on the NW resonator performance is also demonstrated. The decreasing frequency trend with increasing Ge concentration was different for binary alloys and alloy superlattices, while it remained unaffected by the superlattice period. The beat vibration phenomenon driven by a single excitation was observed at elevated temperatures for all studied configurations. The resonance frequency decreases linearly with increasing temperature whereas the Q‐factor follows a power law decrease. The Young's modulus E obtained through stress–strain computational experiments is found to be overestimated compared to the classical beam theory. Frequency decreases linearly as more atoms are added to the resonator. For low temperatures, the quality factor of composite Si/Ge resonators increased from 104 to 105 at T = 23 K, after performing hydrogen passivation on the NW free surfaces. read less USED (high confidence) L. Zhang, H. Zhao, Y. Yang, H. Huang, Z. Ma, and M. Shao, “Evaluation of repeated single-point diamond turning on the deformation behavior of monocrystalline silicon via molecular dynamic simulations,” Applied Physics A. 2014. link Times cited: 38 USED (high confidence) Q. Pei, Z. Sha, Y. Zhang, and Y. Zhang, “Effects of temperature and strain rate on the mechanical properties of silicene,” Journal of Applied Physics. 2014. link Times cited: 101 Abstract: Silicene, a graphene-like two-dimensional silicon, has attra… read moreAbstract: Silicene, a graphene-like two-dimensional silicon, has attracted great attention due to its fascinating electronic properties similar to graphene and its compatibility with existing semiconducting technology. So far, the effects of temperature and strain rate on its mechanical properties remain unexplored. We investigate the mechanical properties of silicene under uniaxial tensile deformation by using molecular dynamics simulations. We find that the fracture strength and fracture strain of silicene are much higher than those of bulk silicon, though the Young's modulus of silicene is lower than that of bulk silicon. An increase in temperature decreases the fracture strength and fracture strain of silicene significantly, while an increase in strain rate enhances them slightly. The fracture process of silicene is also studied and brittle fracture behavior is observed in the simulations. read less USED (high confidence) Z. Shao, B. Ai, and W. Zhong, “The effect of defects on negative differential thermal resistance in symmetric graphene nanoribbons,” Applied Physics Letters. 2014. link Times cited: 13 Abstract: Effect of defects on negative differential thermal resistanc… read moreAbstract: Effect of defects on negative differential thermal resistance (NDTR) is investigated using non-equilibrium molecular dynamics method for the symmetric graphene nanoribbons (GNRs) with defects. Remarkably, it is found that NDTR will disappear as the number of defects increases. In addition, heat current of GNRs with defects is larger than that of the pristine GNRs when the temperature difference is larger. The results are explained qualitatively utilizing the theory of phonon spectra mismatch. The work may be useful in designing thermal-nano devices on the basis of GNRs. read less USED (high confidence) Y.-Y. Liu, W.-X. Zhou, L.-M. Tang, and K. Chen, “Core-shell nanowire serves as heat cable,” Applied Physics Letters. 2013. link Times cited: 24 Abstract: To analyze the thermal transport properties in core-shell na… read moreAbstract: To analyze the thermal transport properties in core-shell nanowires, we calculate systematically the distributions of heat flux in InAs/GaAs and GaAs/InAs core-shell nanowires by using nonequilibrium molecular dynamics simulations. The results show that for InAs/GaAs core-shell nanowires, the heat current tends to transport in the shell, while for GaAs/InAs core-shell nanowires the heat current tends to transport through the core. Moreover, a simple equation is presented to describe the relationship of the thermal conductance among the core, the tubular shell, and core-shell nanowire. It is suggested that the core-shell nanowires can be served as heat cable. read less USED (high confidence) C. Becker, F. Tavazza, Z. Trautt, and R. B. D. Macedo, “Considerations for choosing and using force fields and interatomic potentials in materials science and engineering,” Current Opinion in Solid State & Materials Science. 2013. link Times cited: 196 USED (high confidence) G. Fiedler and P. Kratzer, “Theoretical prediction of improved figure-of-merit in Si/Ge quantum dot superlattices,” New Journal of Physics. 2013. link Times cited: 8 Abstract: A detailed theoretical model for thermoelectric transport pe… read moreAbstract: A detailed theoretical model for thermoelectric transport perpendicular to the multilayers of a Si–Ge heterostructure is presented. The electronic structure of a three-dimensional superlattice, consisting of a regular array of Ge quantum dots in each layer, capped by Si layers, is calculated using an atomistic tight-binding approach. The Seebeck coefficient, the electric conductivity and the contribution of the electrons to the thermal conductivity for n-doped samples are worked out within Boltzmann transport theory. Using experimental literature data for the lattice thermal conductivity, we determine the temperature dependence of the figure of merit ZT. A nonlinear increase of ZT with temperature is found, with ZT > 2 at T = 1000 K in highly doped samples. Moreover, we find an enhanced thermoelectric power factor already at room temperature and below, which is due to highly mobile electrons in strain-induced conductive channels. read less USED (high confidence) F. Zipoli and A. Curioni, “Reactive potential for the study of phase-change materials: GeTe,” New Journal of Physics. 2013. link Times cited: 16 Abstract: We developed a classical potential to model phase-change mat… read moreAbstract: We developed a classical potential to model phase-change materials based on the binary chalcogenide alloy of GeTe that are currently exploited for memory applications. Our potential is based on the recently proposed extension of the Tersoff potential plus additional terms to better reproduce the structure of the amorphous and the crystalline phases of GeTe. The parameters defining the potential reported in this work were fitted to reproduce the energies and forces of a database of reference structures obtained via density-functional theory molecular-dynamics simulations. This paper reports on the method used to construct the potential and on its validation against first-principles calculations either available in literature or part of this work. We found that the structural properties of amorphous GeTe were well reproduced. The advantage of the current implementation toward more flexible neural network-based methods is that most of the parameters can be reconnected to physical properties. Moreover, the relatively small number of parameters results in a simple implementation and facilitates the introductions of further interactions among additional species. read less USED (high confidence) B. Kappes and C. Ciobanu, “Bandgap Opening in Metallic Carbon Nanotubes Due toSilicon Adatoms,” Cmc-computers Materials & Continua. 2013. link Times cited: 1 Abstract: Controlling the bandgap of carbon nanostructures is a key fa… read moreAbstract: Controlling the bandgap of carbon nanostructures is a key factor in the development of mainstream applications of carbon-based nanoelectronic devices. This is particularly important in the cases where it is desired that the carbon nanos- tructures are the active elements, as opposed to being conductive leads between other elements of the device. Here, we report density functional theory calculations of the effect of silicon impurities on the electronic properties of carbon nanotubes (CNTs). We have found that Si adatoms can open up a bandgap in intrinsically metallic CNTs, even when the linear density of Si atoms is low enough that they do not create an adatom chain along the tube. The bandgap opened in metallic CNTs can range up to approximately 0.47 eV, depending on adsorption site, on the linear density of Si adatoms, and on the chirality of the nanotube. We have found that a lower spatial symmetry of the charge transfer between adatom and CNT leads to a higher value of the bandgap opened, which indicates that the physical origin of the bandgap lies in the reduced spatial symmetry of the charge transferred. read less USED (high confidence) W. Yan, T. Gao, X. Guo, Y. Qin, and Q. Xie, “Structural Properties of Liquid SiC during Rapid Solidification,” The Scientific World Journal. 2013. link Times cited: 5 Abstract: The rapid solidification of liquid silicon carbide (SiC) is … read moreAbstract: The rapid solidification of liquid silicon carbide (SiC) is studied by molecular dynamic simulation using the Tersoff potential. The structural properties of liquid and amorphous SiC are analyzed by the radial distribution function, angular distribution function, coordination number, and visualization technology. Results show that both heteronuclear and homonuclear bonds exist and no atomic segregation occurs during solidification. The bond angles of silicon and carbon atoms are distributed at around 109° and 120°, respectively, and the average coordination number is <4. Threefold carbon atoms and fourfold silicon atoms are linked together by six typical structures and ultimately form a random network of amorphous structure. The simulated results help understand the structural properties of liquid and amorphous SiC, as well as other similar semiconductor alloys. read less USED (high confidence) L. W. Chen, Y. Shibuta, M. Kambara, and T. Yoshida, “Molecular dynamics simulation of the role of hydrogenated Si clusters for fast rate mesoplasma epitaxy,” Journal of Physics D: Applied Physics. 2013. link Times cited: 5 Abstract: The formation dynamics of nano-sized hydrogenated Si (Si : H… read moreAbstract: The formation dynamics of nano-sized hydrogenated Si (Si : H) clusters and their interaction with the Si(1 0 0) substrate have been investigated with molecular dynamics simulation using the Tersoff potential. Several nm-sized clusters comprising H atoms are obtained during rapid cooling of atomic Si and H vapour mixtures. Upon surface impingement, the Si : H clusters display higher degrees of deformation and atomic self-ordering than the Si clusters formed with no H atom incorporation. This is due to the movement of the high potential H atoms toward the cluster surface during deformation, not to the local heat generation by the atomic H recombination within the cluster. read less USED (high confidence) R. Cortés, D. Acharya, C. Ciobanu, E. Sutter, and P. Sutter, “Graphene on Ru(0001) Moiré Corrugation Studied by Scanning Tunneling Microscopy on Au/Graphene/Ru(0001) Heterostructures,” Journal of Physical Chemistry C. 2013. link Times cited: 12 Abstract: Two-dimensional Au islands of different thicknesses grown on… read moreAbstract: Two-dimensional Au islands of different thicknesses grown on graphene/Ru(0001) were used to study the corrugation of the moire structure of graphene/Ru(0001) and discriminate between its mainly structural or electronic character. A comparison of the apparent corrugation measured by scanning tunneling microscopy (STM) for different Au thicknesses with results of elasticity theory equations applied to a gold film over a corrugated substrate shows that the corrugation observed for the graphene/Ru(0001) moire is of structural nature rather than electronic. STM showed a large value for the corrugation of the first Au monolayer on graphene/Ru(0001), 1.7 A; using density functional theory calculations, we explain this large corrugation of the Au monolayer as the result of a strong (weak) binding of the Au layer at the valley (hill) regions of the graphene/Ru(0001) moire structure and infer an actual corrugation of the graphene/Ru(0001) moire structure of ∼1.2 A from the measured corrugation of the Au monolayer. read less USED (high confidence) M. Yasuda, Y. Chihara, K. Tada, H. Kawata, and Y. Hirai, “Correlation between electron irradiation defects and applied stress in carbon nanotubes: A molecular dynamics study,” Journal of Vacuum Science & Technology. B. Nanotechnology and Microelectronics: Materials, Processing, Measurement, and Phenomena. 2013. link Times cited: 3 Abstract: Molecular dynamics simulations have been performed to study … read moreAbstract: Molecular dynamics simulations have been performed to study the correlation between electron irradiation defects and applied stress in single-walled carbon nanotubes. The electron irradiation effect is modeled based on the Monte Carlo method using binary collision theory. The simulations show that the number of knock-on defects is not significantly affected by applied stress. Electron collision causes early stage defects such as bond breaking and punched-out atoms. The applied stresses become nonequilibrium and concentrates around the defect site. The biased stresses become driving forces and cause bond shifts and rotations, which results in the formation of pentagon–heptagon pairs and Stone–Wales defects. read less USED (high confidence) A. Aitkaliyeva, D. Chen, and L. Shao, “Phonon transport assisted by inter-tube carbon displacements in carbon nanotube mats,” Scientific Reports. 2013. link Times cited: 19 USED (high confidence) W. Little et al., “Structural origin of light emission in germanium quantum dots,” Scientific Reports. 2013. link Times cited: 1 USED (high confidence) H. Yang et al., “Influence of doped nitrogen and vacancy defects on the thermal conductivity of graphene nanoribbons,” Journal of Molecular Modeling. 2013. link Times cited: 19 USED (high confidence) Q. Zhang and D.-feng Diao, “Potential of graphene layer controlling nano-wear during C60 intrusion by molecular dynamics simulation,” Wear. 2013. link Times cited: 11 USED (high confidence) S. Cea et al., “Process modeling for advanced device technologies,” Journal of Computational Electronics. 2013. link Times cited: 0 USED (high confidence) M. Park, S.-C. Lee, and Y.-S. Kim, “Length-dependent lattice thermal conductivity of graphene and its macroscopic limit,” Journal of Applied Physics. 2013. link Times cited: 46 Abstract: In this paper, we report a non-equilibrium molecular dynamic… read moreAbstract: In this paper, we report a non-equilibrium molecular dynamics study on the length-dependent lattice thermal conductivity of graphene with lengths up to 16 μm at room temperature. In the molecular dynamics simulations, whether the non-equilibrium systems reach the steady states is rigorously investigated, and the times to reach the steady states are found to drastically increase with the lengths of graphene. From the ballistic to the diffusive regime, the lattice thermal conductivities are explicitly calculated and found to keep increasing in a wide range of lengths with finally showing a converging behavior at 16 μm. That obtained macroscopic value of the lattice thermal conductivity of graphene is 3200 W/mK. read less USED (high confidence) W. Yan, T. Gao, X. Guo, Y. Qin, and Q. Xie, “Melting kinetics of bulk SiC using molecular dynamics simulation,” Science China Physics, Mechanics and Astronomy. 2013. link Times cited: 0 USED (high confidence) W. Yan, T. Gao, X. Guo, Y. Qin, and Q. Xie, “Melting kinetics of bulk SiC using molecular dynamics simulation,” Science China Physics, Mechanics and Astronomy. 2013. link Times cited: 10 USED (high confidence) Q. Pei, Y. Zhang, Z. Sha, and V. Shenoy, “Tuning the thermal conductivity of silicene with tensile strain and isotopic doping: A molecular dynamics study,” Journal of Applied Physics. 2013. link Times cited: 118 Abstract: Silicene is a monolayer of silicon atoms arranged in honeyco… read moreAbstract: Silicene is a monolayer of silicon atoms arranged in honeycomb lattice similar to graphene. We study the thermal transport in silicene by using non-equilibrium molecular dynamics simulations. We focus on the effects of tensile strain and isotopic doping on the thermal conductivity, in order to tune the thermal conductivity of silicene. We find that the thermal conductivity of silicene, which is shown to be only about 20% of that of bulk silicon, increases at small tensile strains but decreases at large strains. We also find that isotopic doping of silicene results in a U-shaped change of the thermal conductivity for the isotope concentration varying from 0% to 100%. We further show that ordered doping (isotope superlattice) leads to a much larger reduction in thermal conductivity than random doping. Our findings are important for the thermal management in silicene-based electronic devices and for thermoelectric applications of silicene. read less USED (high confidence) M. Ridgway et al., “Tracks and voids in amorphous Ge induced by swift heavy-ion irradiation.,” Physical review letters. 2013. link Times cited: 78 Abstract: Ion tracks formed in amorphous Ge by swift heavy-ion irradia… read moreAbstract: Ion tracks formed in amorphous Ge by swift heavy-ion irradiation have been identified with experiment and modeling to yield unambiguous evidence of tracks in an amorphous semiconductor. Their underdense core and overdense shell result from quenched-in radially outward material flow. Following a solid-to-liquid phase transformation, the volume contraction necessary to accommodate the high-density molten phase produces voids, potentially the precursors to porosity, along the ion direction. Their bow-tie shape, reproduced by simulation, results from radially inward resolidification. read less USED (high confidence) L. Zhang and K. Mylvaganam, “Tunable metallic silicon nanowires and quantum dots with tailored dimensions and spacing,” Journal of Applied Physics. 2013. link Times cited: 3 Abstract: Metallic silicon nanowire and quantum dots are promising low… read moreAbstract: Metallic silicon nanowire and quantum dots are promising low dimensional materials for a great range of applications. A critical issue is their quality-controlled, cost-effective fabrication. This paper presents a simple method for making seamlessly integrated tunable metallic silicon nanowires and quantum dots in the subsurface of mono-crystalline silicon by mechanical scratching. The study predicted, with the aid of the molecular dynamics analysis, that arrays of stable metallic bct-5 silicon nanowires and conductive quantum dots could be produced in the subsurface of silicon by scratching the {001} surface along a ⟨110⟩ direction. The dimension and spacing of the nanowires and quantum dots can easily be controlled by adjusting the distance between scratching tips, the size of the tips, and their depth-of-cut. It was also shown that the metallic bct-5 silicon is stable under a residual octahedral shear stress of 5 to 8 GPa. read less USED (high confidence) X. Lu, P. La, X. Guo, Y.-peng Wei, X. Nan, and L. He, “Investigation of Nanomechanical Properties of β-Si3N4 Thin Layers in a Prismatic Plane under Tension: A Molecular Dynamics Study.,” The journal of physical chemistry letters. 2013. link Times cited: 6 Abstract: We report molecular dynamics simulations of the nanomechanic… read moreAbstract: We report molecular dynamics simulations of the nanomechanical properties and fracture mechanisms of β-Si3N4 thin layers in a prismatic plane under uniaxial tension. It is found that the thin layers in the y loading direction display a linear stress-strain relationship at ε < 0.021, and afterward, the stress increases nonlinearly with the strain until fracture occurs. However, for the z direction, the linear response is located at ε < 0.051. The calculated fracture stresses and strains of the thin layers increase with strain rates both in both directions. The thin layers exhibit the higher Young's modulus of 0.345 TPa in the z direction, higher than that in the y direction. The origins of crack derive from N(2c-1)-Si and N(6h-1)-Si bonds for the y and z loading directions, respectively. read less USED (high confidence) P. Y. Grigor’ev and E. E. Zhurkin, “Simulation of the sputtering of Si nanoclusters with diameters of (2–8) nm under bombardment with monatomic and cluster ions using the method of classical molecular dynamics,” Journal of Surface Investigation. X-ray, Synchrotron and Neutron Techniques. 2013. link Times cited: 1 USED (high confidence) E. J. D. Liscia, F. Alvarez, E. Burgos, E. Halac, H. Huck, and M. Reinoso, “Stress Analysis on Single-Crystal Diamonds by Raman Spectroscopy 3D Mapping,” Materials Sciences and Applications. 2013. link Times cited: 24 Abstract: Results on stress analysis for single-crystal diamonds are p… read moreAbstract: Results on stress analysis for single-crystal diamonds are presented. Isolated crystals were studied by Raman mapping and depth profiling techniques, using confocal microscopy. Diamonds were deposited on molybdenum and tantalum by hot filament and microwave CVD methods at growth rates between 10 and 30 μm·h-1. Crystals from 10 to 40 μm size were examined. Local stress was evaluated by analyzing the position, broadening and splitting of the 1332 cm-1 Raman peak in a 3D mapping. For the (001) orientation, the most stressed zone was found at the center of the crystal base, close to the interface with the substrate: a Raman peak around 1340 cm-1 was measured, corresponding to a pressure c.a. 3 GPa, according to our dynamical calculations. This peak disappears few microns out of the center, suggesting that this highly concentrated stress sector was the nucleation zone of the crystal. A shifting and slight broadening of the 1332 cm-1 band was observed in the rest of the crystal. The causes of these effects are discussed: they proved not to be due to anisotropic stress but to refractive effects. Same results were found for different crystal sizes and growth rates. read less USED (high confidence) C. Kerestes et al., “Investigation of carrier removal from QD TJSCs,” Photonics West - Optoelectronic Materials and Devices. 2013. link Times cited: 1 Abstract: Quantum dot triple junction solar cells (QD TJSCs) have pote… read moreAbstract: Quantum dot triple junction solar cells (QD TJSCs) have potential for higher efficiency for space and terrestrial applications. Extended absorption in the QD layers can increase efficiency by increasing the short circuit current density of the device, as long as carrier extraction remains efficient and quality of the bulk material remains high. Experimental studies have been conducted to quantify the carrier extraction probability from quantum confined levels and bulk material. One studies present insight to the carrier extraction mechanisms from the quantum confined states through the use of temperature dependent measurements. A second study analyses the loss in carrier collection probability in the bulk material by investigating the change in minority carrier lifetimes and surface recombination velocity throughout the device. Recent studies for space applications have shown response from quantum structures to have increased radiation tolerance. The role strain and bonding strength within the quantum structures play in improving the radiation tolerance is investigated. The combination of sufficiently good bulk material and device enhancement from the quantum confinement leads to temperature dependent measurements that show TJSCs outperform baseline TJSCs near and above 60°C. Insight into the physical mechanisms behind this phenomenon is presented. read less USED (high confidence) E. Jin, L. Niu, E. Lin, and Z. Duan, “Effects of irradiation on the mechanical behavior of twined SiC nanowires,” Journal of Applied Physics. 2013. link Times cited: 8 Abstract: Irradiation is known to bring new features in one-dimensiona… read moreAbstract: Irradiation is known to bring new features in one-dimensional nano materials. In this study, we used molecular dynamics simulations to investigate the irradiation effects on twined SiC nanowires. Defects tend to accumulate from outside toward inside of the twined SiC nanowires with increasing irradiation dose, leading to a transition from brittle to ductile failure under tensile load. Atomic chains are formed in the ductile failure process. The first-principles calculations show that most of the atomic chains are metallic. read less USED (high confidence) K. Termentzidis et al., “Modulated SiC nanowires: Molecular dynamics study of their thermal properties,” Physical Review B. 2013. link Times cited: 59 Abstract: The thermal conductivity of diameter and polytype modulated … read moreAbstract: The thermal conductivity of diameter and polytype modulated SiC nanowires is predicted using nonequilibrium molecular dynamics. For the polytype modulated nanowires, the two main SiC polytypes, zinc blende (3C) and wurtzite (2H) were considered. We show that the thermal conductivity of the diameter modulated nanowires may be even smaller than that of the constant diameter nanowire with the small section. This remarkable reduction in thermal conduction is attributed to a significant thermal boundary resistance displayed by the constriction, as measured by independent molecular-dynamics simulations. The constriction resistance is related to the confinement of low-frequency modes, as shown by vibrational density-of-states calculations. We used Monte Carlo simulations to conclude that the value of the constriction resistance may be explained by the specular reflections of this class of modes on the surface surrounding the constriction. read less USED (high confidence) X. Li and R. Yang, “Equilibrium molecular dynamics simulations for the thermal conductivity of Si/Ge nanocomposites,” Journal of Applied Physics. 2013. link Times cited: 17 Abstract: Various methods have been used to study the thermal conducti… read moreAbstract: Various methods have been used to study the thermal conductivity of nanocomposites which are playing increasing roles in energy conversion and thermal management. However, when the size of particle inclusions is on the order of several nanometers, the existing macro- and meso-scale analytical methods cannot be used to predict the thermal conductivity of nanocomposites due to the existence of both phonon wave interference and particle scattering effects. In this study, equilibrium molecular dynamics (EMD) is explored to study the thermal conductivity of Si/Ge nanocomposites. We found that EMD can be used to study the thermal conductivity of nanocomposites when multiple nanoparticles are included to avoid the artificial effect of simulation domain sizes. We then calculated the thermal conductivity of Si/Ge nanocomposites with different volumetric ratio and particle size at 300 K. The result shows that the thermal conductivity of Si/Ge nanocomposites first decreases and then increases with decreasing particl... read less USED (high confidence) T. Ng, J. Yeo, and Z. Liu, “Molecular dynamics simulation of the thermal conductivity of shorts strips of graphene and silicene: a comparative study,” International Journal of Mechanics and Materials in Design. 2013. link Times cited: 73 USED (high confidence) X. Tan, J. Wu, K. W. Zhang, X. Peng, L. Sun, and J. Zhong, “Nanoindentation models and Young’s modulus of monolayer graphene: A molecular dynamics study,” Applied Physics Letters. 2013. link Times cited: 75 Abstract: We studied the nanoindentation of monolayer graphene by mole… read moreAbstract: We studied the nanoindentation of monolayer graphene by molecular dynamics simulations. It is found that the response of graphene to indentation is deflection dependent. In small deflection range, the response obeys point load model, while large-deflection indentation follows the sphere load model. Hence, we proposed to make sectional fittings and use different response models in different deflection ranges. In this way, a consistent Young's modulus is obtained that is almost independent of the size ratio of intender to graphene and the pretensions of graphene. The calculated Young's modulus is about 1.00 TPa, in good agreement with the experiments. read less USED (high confidence) A. Vallabhaneni, B. Qiu, J. Hu, Y. P. Chen, A. Roy, and X. Ruan, “Interfacial Thermal Conductance Limit and Thermal Rectification Across Vertical Carbon Nanotube/Graphene Nanoribbon-Silicon Interfaces,” Journal of Applied Physics. 2013. link Times cited: 36 Abstract: Various models were previously used to predict interfacial t… read moreAbstract: Various models were previously used to predict interfacial thermal conductance of vertical carbon nanotube (CNT)-silicon interfaces, but the predicted values were several orders of magnitude off the experimental data. In this work, we show that the CNT filling fraction (the ratio of contact area to the surface area of the substrate) is the key to remedy this discrepancy. Using molecular dynamics, we have identified an upper limit of thermal interface conductance for C-Si interface which is around 1.25 GW/m2K, corresponding to a 100% filling fraction of carbon nanotube or graphene nanoribbon on substrate. By extrapolating to low filling fraction (∼1%) that was measured in experiments, our predicted interfacial thermal conductance agrees with experimental data for vertical CNT arrays grown on silicon substrate (∼3 MW/m2 K). Meanwhile, thermal rectification of more than 20% has been found at these C-Si interfaces. We observed that this is strongly dependent on the interfacial temperature drop than the fillin... read less USED (high confidence) X. Lu, M. Chen, L. Fan, C. Wang, H. Wang, and G. Qiao, “Mechanical properties of β-Si3N4 thin layers in basal plane under tension: A molecular dynamics study,” Applied Physics Letters. 2013. link Times cited: 11 Abstract: The mechanical properties and failure mechanisms of the β-Si… read moreAbstract: The mechanical properties and failure mechanisms of the β-Si3N4 thin layers in basal plane under uniaxial tension are investigated by using molecular dynamics simulations. It is found that the thin layers display a nonlinear stress-strain relationship first at e < 0.06, and then a linear response at 0.06 < e < 0.09, and finally the stresses increase nonlinearly with the strains until fracture occurs. The fracture stresses and strains increase with increasing the side lengths of the thin layers, and the trend is same for Young's moduli accompanying little anisotropy. The deterioration in mechanical properties derives from the N6h-Si bonds where the fracture is initiated. read less USED (high confidence) C. Yu and G. Zhang, “Impacts of length and geometry deformation on thermal conductivity of graphene nanoribbons,” Journal of Applied Physics. 2013. link Times cited: 64 Abstract: In this work, we report a theoretical study on thermal condu… read moreAbstract: In this work, we report a theoretical study on thermal conductivity of graphene nanoribbons by using molecular dynamics simulation. It is found that the thermal conductivity (κ) increases with the length (L) as, κ∝Lβ, even when the length is up to 600 nm. Moreover, thermal conductivities of curling and twisted graphene nanoribbons are investigated. In contrast to the obvious dependence on sample length, thermal conductivity is not sensitive to these types of geometry deformation due to the superior flexibility of graphenes. Our results predict that curling graphene nanoribbons may have advantages in suspended single-layer heat dissipation devices. read less USED (high confidence) Y. Asayama, M. Yasuda, K. Tada, H. Kawata, and Y. Hirai, “Molecular dynamics study of the structural modification of graphene by electron irradiation,” Journal of Vacuum Science & Technology. B. Nanotechnology and Microelectronics: Materials, Processing, Measurement, and Phenomena. 2012. link Times cited: 10 Abstract: Molecular dynamics simulations have been used to study the s… read moreAbstract: Molecular dynamics simulations have been used to study the structural modification of graphene by electron irradiation. The authors used the Monte Carlo method to introduce the interaction between incident electrons and carbon atoms in graphene. Then, the effects of electron energy and incident angle on irradiation defects in single-layer graphene were studied, and the cutting of single-layer graphene using different methods of electron irradiation was compared. Following this, the authors simulated the process of single atom chain formation from single-layer graphene using electron irradiation. They also demonstrated the formation of three-dimensional structures, such as tubular structures and nanotube junctions, in bilayer graphene by electron irradiation. The simulations show the capability of structural modification of graphene to a variety of nanostructures by electron irradiation.Molecular dynamics simulations have been used to study the structural modification of graphene by electron irradiation. The authors used the Monte Carlo method to introduce the interaction between incident electrons and carbon atoms in graphene. Then, the effects of electron energy and incident angle on irradiation defects in single-layer graphene were studied, and the cutting of single-layer graphene using different methods of electron irradiation was compared. Following this, the authors simulated the process of single atom chain formation from single-layer graphene using electron irradiation. They also demonstrated the formation of three-dimensional structures, such as tubular structures and nanotube junctions, in bilayer graphene by electron irradiation. The simulations show the capability of structural modification of graphene to a variety of nanostructures by electron irradiation. read less USED (high confidence) A. Sgouros, M. Sigalas, G. Kalosakas, K. Papagelis, and N. Papanicolaou, “Phononic band gap engineering in graphene,” Journal of Applied Physics. 2012. link Times cited: 15 Abstract: Using ab initio and molecular dynamics simulations with semi… read moreAbstract: Using ab initio and molecular dynamics simulations with semi-empirical potentials, the phonon density of states (PnDOS) of graphene with different types of defects such as substitution atoms (Si), carbon isotopes (12C and 14C), and vacancies was calculated. The main interest was to investigate the possibility to generate phononic band gaps (PBGs) in the PnDOS of graphene, since the derived structures may have sufficiently low thermal conductivity and find applications in improved thermoelectric materials. From all the studied defect types, the silicon substitution is the only one that creates PBGs. read less USED (high confidence) M. Hu and D. Poulikakos, “Si/Ge superlattice nanowires with ultralow thermal conductivity.,” Nano letters. 2012. link Times cited: 193 Abstract: The engineering of nanostructured materials with very low th… read moreAbstract: The engineering of nanostructured materials with very low thermal conductivity is a necessary step toward the realization of efficient thermoelectric devices. We report here the main results of an investigation with nonequilibrium molecular dynamics simulations on thermal transport in Si/Ge superlattice nanowires aiming at taking advantage of the inherent one dimensionality and the combined presence of surface and interfacial phonon scattering to yield ultralow values for their thermal conductivity. Our calculations revealed that the thermal conductivity of a Si/Ge superlattice nanowire varies nonmonotonically with both the Si/Ge lattice periodic length and the nanowire cross-sectional width. The optimal periodic length corresponds to an order of magnitude (92%) decrease in thermal conductivity at room temperature, compared to pristine single-crystalline Si nanowires. We also identified two competing mechanisms governing the thermal transport in superlattice nanowires, responsible for this nonmonotonic behavior: interface modulation in the longitudinal direction significantly depressing the phonon group velocities and hindering heat conduction, and coherent phonons occurring at extremely short periodic lengths counteracting the interface effect and facilitating thermal transport. Our results show trends for superlattice nanowire design for efficient thermoelectrics. read less USED (high confidence) M. Nolan, M. Legesse, and G. Fagas, “Surface orientation effects in crystalline-amorphous silicon interfaces.,” Physical chemistry chemical physics : PCCP. 2012. link Times cited: 20 Abstract: In this paper we present the results of empirical potential … read moreAbstract: In this paper we present the results of empirical potential and density functional theory (DFT) studies of models of interfaces between amorphous silicon (a-Si) or hydrogenated amorphous Si (a-Si:H) and crystalline Si (c-Si) on three unreconstructed silicon surfaces, namely (100), (110) and (111). In preparing models of a-Si on c-Si, melting simulations are run with classical molecular dynamics (MD) at 3000 K for 10 ps to melt part of the crystalline surface and the structure is quenched to 300 K using a quench rate of 6 × 10(12) K s(-1) and finally relaxed with DFT. Incorporating the optimum hydrogen content in a-Si to passivate undercoordinated Si, followed by DFT relaxation, produces hydrogenated amorphous silicon on crystalline surfaces, a-Si:H/c-Si. The (100) surface is the least stable crystalline surface and forms the thickest amorphous Si region, while the most stable (110) surface forms the smallest amorphous region. Calculated radial distribution functions (RDF) in the amorphous and crystalline layers are consistent with a-Si and c-Si and indicate a structural interface region one layer thick. The electronic density of states shows an evolution from c-Si to a-Si (or a-Si:H), with a larger electronic interface layer, suggesting that the electronic properties are more strongly perturbed by interface formation compared to the atomic structure. The computed optical absorption spectra show strong effects arising from the formation of different a-Si and a-Si:H regions in different Si surfaces. read less USED (high confidence) I. Chang and J. W. Chou, “A molecular analysis of carbon nanotori formation,” Journal of Applied Physics. 2012. link Times cited: 11 Abstract: This study uses molecular dynamics simulation to examine the… read moreAbstract: This study uses molecular dynamics simulation to examine the geometric criteria and stability of forming a perfect carbon nanotorus without pentagon-heptagon defects or surface buckles. Various nanotube diameters and nanoring diameters of both armchair and zigzag nanotori were relaxed at room temperature, and the equilibrated atomic configurations were inspected. This study uses the coordinate parameter, which illustrates the atomic arrangement around each atom, as an indicator of buckles to avoid misjudgment caused by transient or thermal disturbance. For each nanotube diameter, there exists a critical nanoring diameter beyond which the perfect carbon nanotori can form. This study examines the binding potential energy and deformation energy of the relaxed nanotorus model, showing that the critical nanoring diameter cannot be easily predicted through critical energy consideration because buckling is a form of structural instability. Results show that the structural stability of a perfect nanoring primarily depends on the nanotube diameter and nanoring diameter, whereas its chirality has little effect, and one empirical relation is fitted to determine the critical nanoring diameters. read less USED (high confidence) L. Pan et al., “Thermoelectric properties of armchair and zigzag silicene nanoribbons.,” Physical chemistry chemical physics : PCCP. 2012. link Times cited: 110 Abstract: Using the nonequilibrium Green's function method and no… read moreAbstract: Using the nonequilibrium Green's function method and nonequilibrium molecular dynamics simulations, we discuss the possibility of using silicene nanoribbons (SiNRs) as high performance thermoelectric materials. It is found that SiNRs are structurally stable if the edge atoms are passivated by hydrogen, and those with armchair edges usually exhibit much better thermoelectric performance than their zigzag counterparts. The room temperature ZT value of armchair SiNRs shows a width-dependent oscillating decay, while it decreases slowly with increasing ribbon width for the zigzag SiNRs. In addition, there is a strong temperature dependence of the thermoelectric performance of these SiNRs. Our theoretical calculations indicate that by optimizing the doping level and applied temperature, the ZT value of SiNRs could be enhanced to as high as 4.9 which suggests their very appealing thermoelectric applications. read less USED (high confidence) I. Y. Gotlib, A. K. Ivanov-Schitz, I. Murin, A. Petrov, and R. Zakalyukin, “Structure and Ionic Transport Properties of AgI1–xBrx within Single-Wall Carbon Nanotubes from Molecular Dynamics Simulation,” Journal of Physical Chemistry C. 2012. link Times cited: 5 Abstract: Morphologies of AgI1–xBrx (0 ≤ x ≤ 1) nanocrystalline struct… read moreAbstract: Morphologies of AgI1–xBrx (0 ≤ x ≤ 1) nanocrystalline structures formed in carbon single-wall nanotubes (SWNT), of diameter d = 11.5–17.6 A, have been investigated by molecular dynamics simulation. For AgI1–xBrx in a (10, 10) carbon SWNT (d = 13.54 A), ionic motion characteristics at different temperatures have been studied. Calculations confirm the experimentally based suggestion that structural differences between AgI and AgBr in carbon SWNTs are less pronounced than in the bulk crystals. According to the simulation results, in tubes taken out from the melt, AgBr and AgI1–xBrx tend to form hexagonal nanotubes after annealing, similar to those formed by AgI. A superionic state, with significant silver ion mobility against a stable anion sublattice, can be observed in the simulated AgI1–xBrx@SWNT; the superionic conduction temperature range shifts downward with increasing bromine content. At temperatures below and just above the nanocrystal melting point, ion migration is faster in more bromine-rich AgI1–... read less USED (high confidence) T. Markussen, “Surface disordered Ge-Si core-shell nanowires as efficient thermoelectric materials.,” Nano letters. 2012. link Times cited: 54 Abstract: Ge-Si core-shell nanowires with surface disorder are shown t… read moreAbstract: Ge-Si core-shell nanowires with surface disorder are shown to be very promising candidates for thermoelectric applications. In atomistic calculations we find that surface roughness decreases the phonon thermal conductance significantly. On the contrary, the hole states are confined to the Ge core and are thereby shielded from the surface disorder, resulting in large electronic conductance values even in the presence of surface disorder. This decoupling of the electronic and phonon transport is very favorable for thermoelectric purposes, giving rise to promising room temperature figure of merits ZT > 2. It is also found that the Ge-Si core-shell wires perform better than pure Si nanowires. read less USED (high confidence) V. Sorkin and Y. W. Zhang, “Epitaxy of Prestrained Graphene on a Si-Terminated SiC(0001) Surface,” Journal of Physical Chemistry C. 2012. link Times cited: 2 Abstract: When a graphene sheet is transferred onto a Si-terminated Si… read moreAbstract: When a graphene sheet is transferred onto a Si-terminated SiC(0001) substrate, covalent Si–C bonds form at the interface. These interfacial bonds may form domains with a regular lattice pattern. The domain size is dictated by the lattice mismatch between graphene and its substrate. In the present work, a strategy of strain engineering is employed to eliminate the lattice mismatch to achieve a perfect epitaxy between the graphene and the substrate. Both molecular mechanics simulations and density function calculations confirm the perfect epitaxial pattern formed between a prestrained graphene sheet and its underlying silicon-carbide substrate. We further examine the edge effect on the disruption of the epitaxial pattern of prestrained graphene nanoribbons. It is found that that the perfect epitaxial pattern is disrupted only along the narrow regions near the nanoribbon edges, and the size of the affected region of the arm-chair ribbon is about 3 times larger than that of the zigzag ribbon. read less USED (high confidence) L. Wang and H. Sun, “Thermal conductivity of silicon and carbon hybrid monolayers: a molecular dynamics study,” Journal of Molecular Modeling. 2012. link Times cited: 23 USED (high confidence) L. Xiong and Y. Chen, “Coarse-Grained Atomistic Modeling and Simulation of Inelastic Material Behavior,” Acta Mechanica Solida Sinica. 2012. link Times cited: 8 USED (high confidence) V. Favre-Nicolin, M. Proietti, C. Leclere, N. A. Katcho, M. Richard, and H. Renevier, “Multiwavelength anomalous diffraction and diffraction anomalous fine structure to study composition and strain of semiconductor nanostructures,” The European Physical Journal Special Topics. 2012. link Times cited: 24 USED (high confidence) G. Chen et al., “Dynamical process of KrF pulsed excimer laser crystallization of ultrathin amorphous silicon films to form Si nano-dots,” Journal of Applied Physics. 2012. link Times cited: 5 Abstract: Molecular dynamics (MD) simulations based on the Tersoff pot… read moreAbstract: Molecular dynamics (MD) simulations based on the Tersoff potential have been developed to study the laser-induced crystallization of amorphous silicon (a-Si) film with ultrathin thickness to form size-controllable Si nano-dots. The influences of laser fluence and a-Si film thickness on the crystallization process were discussed. Classic nucleation theory was used to explain the results of the MD simulations. The constrain effect of a-Si films thickness on the formation of Si nano-dots was evaluated accordingly. read less USED (high confidence) L. Li, F. Solá, Z. Xia, and Y. Yang, “Effect of amorphous carbon coatings on the mechanical behavior of silicon carbide nanowire,” Journal of Applied Physics. 2012. link Times cited: 17 Abstract: Silicon carbide nanowires (NWs) are promising candidates for… read moreAbstract: Silicon carbide nanowires (NWs) are promising candidates for structural applications owing to their excellent mechanical, thermal, and electronic properties. The effect of amorphous carbon coatings on the mechanical behavior of the nanowires was studied via molecular dynamics methods at room temperature. The results show that the amorphous carbon coatings can shield opening cracks on silicon carbide nanowires, making them damage-tolerant. With increasing the defect size, the tensile strength and fracture energy of uncoated silicon carbide nanowires rapidly decrease; however, the properties of coated nanowires maintain nearly constant. Increasing the coating thickness leads to a brittle-to-ductile transition for the nanowires. Careful tailoring of the coatings permits engineering of these nanostructures for higher strength and damage tolerance at submicron scales. read less USED (high confidence) P. Y. Grigor’ev and E. E. Zhurkin, “Classical molecular dynamic simulation of (111) Si and Al surface sputtering under bombardment by polyatomic clusters,” Journal of Surface Investigation. X-ray, Synchrotron and Neutron Techniques. 2012. link Times cited: 3 USED (high confidence) K. V. Shanavas, K. Pandey, N. Garg, and S. M. Sharma, “Computer simulations of crystallization kinetics in amorphous silicon under pressure,” Journal of Applied Physics. 2012. link Times cited: 9 Abstract: With the help of computer simulations we have studied the cr… read moreAbstract: With the help of computer simulations we have studied the crystallization kinetics of amorphous silicon in solid phase epitaxial (SPE) and random nucleation growth processes. Our simulations employing classical molecular dynamics and first principles methods suggest qualitatively similar behavior in both processes. Pressure is found to reduce the difference in molar volumes and coordination numbers between the amorphous and crystalline phases, which in turn lowers the energy barrier of crystallization. The activation energy for the SPE growth of four coordinated diamond phase is found to reach a minimum (a maximum in growth rates) close to 10 GPa when its density becomes equal to that of the amorphous phase. The crystallization temperatures of successive high pressure phases of silicon are found to decrease, offering a possible explanation for the pressure induced crystallization reported in this material. read less USED (high confidence) N. Swaminathan, M. Wojdyr, D. Morgan, and I. Szlufarska, “Radiation interaction with tilt grain boundaries in β-SiC,” Journal of Applied Physics. 2012. link Times cited: 21 Abstract: Interaction between grain boundaries and radiation is studie… read moreAbstract: Interaction between grain boundaries and radiation is studied in 3C-SiC by conducting molecular dynamics cascade simulations on bicrystal samples with different misorientation angles. The damage in the in-grain regions was found to be unaffected by the grain boundary type and is comparable to damage in single crystal SiC. Radiation-induced chemical disorder in the grain boundary regions is quantified using the homonuclear to heteronuclear bond ratio (χ). We found that χ increases nearly monotonically with the misorientation angle, which behavior has been attributed to the decreasing distance between the grain boundary dislocation cores with an increasing misorientation angle. The change in the chemical disorder due to irradiation was found to be independent of the type of the grain boundary. read less USED (high confidence) Y.-ping Xiao, J. Taguchi, T. Motooka, and S. Munetoh, “Nucleation and Crystal Growth of Si1-xGex Melts during Rapid Cooling Processes: A Molecular-Dynamics Study,” Japanese Journal of Applied Physics. 2012. link Times cited: 3 Abstract: To clarify the growth mechanism of the lateral growth of Ge … read moreAbstract: To clarify the growth mechanism of the lateral growth of Ge in the rapid-melting-growth process, two types of molecular-dynamics simulation were investigated in this study. One was the nucleation of Si1-xGex (0 ≤x ≤1) from supercooled melts, and the other is the growth rate of supercooled Si1-xGex melts using a crystalline Si1-xGex seed. The incubation time is found to be minimum at approximately 0.70 Tm (Tm: melting temperature for Si1-xGex). No nucleation was found when the temperature was higher than 0.75 Tm. The crystal growth rates of Si1-xGex peaked between 0.90 Tm and 0.94 Tm for both the [100] and [111] orientations. These results suggest that 0.90 Tm to 0.94 Tm of Si1-xGex (x = 1) is an optimum temperature range to grow crystalline Ge in the rapid-melting-growth process. read less USED (high confidence) X. Y. Li, K. W. Zhang, X. Peng, S. M. Li, X. Tan, and J. Zhong, “Dynamical behavior of the kink motion in carbon nanotubes,” The European Physical Journal B. 2012. link Times cited: 1 USED (high confidence) X. Tan et al., “Optimizing the thermoelectric performance of zigzag and chiral carbon nanotubes,” Nanoscale Research Letters. 2012. link Times cited: 22 USED (high confidence) G. Yun and H. S. Park, “Bridging the gap between experimental measurements and atomistic predictions of the elastic properties of silicon nanowires using multiscale modeling,” Finite Elements in Analysis and Design. 2012. link Times cited: 9 USED (high confidence) X. Wang and J. D. Lee, “Heat Wave Driven by Nanoscale Mechanical Impact between C 60 and Graphene,” Journal of Nanomechanics and Micromechanics. 2012. link Times cited: 7 Abstract: This paper presents a novel physical phenomenon—heat wave pr… read moreAbstract: This paper presents a novel physical phenomenon—heat wave propagation—at the atomic scale by investigating the collision of C60 molecules with a graphene sample through molecular dynamics (MD) simulation. A correlation between mechanical wave and temperature variation has been captured at the early stage of collision to demonstrate that temperature variations behave in a wave motion, which contradicts the concept in classical continuum mechanics, whereas later temperature variations exhibit the properties of a diffusion equation. This intriguing result, called wave-diffusion duality, offers an insight into the thermomechanical coupling phenomenon of nanodevices. DOI: 10.1061/(ASCE)NM.2153-5477.0000044. © 2012 American Society of Civil Engineers. CE Database subject headings: Nanotechnology; Wave propagation; Simulation; Diffusion; Temperature effects. Author keywords: Molecular dynamics; Graphene; Buckyball; Collision; Heat wave; Wave-diffusion duality. read less USED (high confidence) P. Li and D.-feng Diao, “Molecular dynamics simulation of intrusion of a C60 molecule ball into sliding contact space,” Lubrication Science. 2012. link Times cited: 2 Abstract: The intrusion process of a C60 ball into a sliding contact s… read moreAbstract: The intrusion process of a C60 ball into a sliding contact space with an included angle made up by two silicon substrates (100) was simulated using the molecular dynamics approach. The simulation was carried out using Tersoff potential of C and Si atoms at room temperature of 300 K. The included angle was defined as initial entry angle changing from 20° to 90° in the simulation for studying the effect of the initial entry angle during the intrusion process. The dependence of the initial entry angle on the number of sticking Si atoms of upper substrate was calculated. The results showed that the number of sticking atoms increased with the increasing of initial entry angle, and the number of sticking atoms was divided into three regions with different slopes, which could be used to evaluate the intrusion performance of a C60 ball into the sliding contact space. Copyright © 2011 John Wiley & Sons, Ltd. read less USED (high confidence) X. Wang and J. D. Lee, “Heat resistance of carbon nanoonions by molecular dynamics simulation,” Interaction and multiscale mechanics. 2011. link Times cited: 3 Abstract: Understanding the structural stability of carbon nanostructu… read moreAbstract: Understanding the structural stability of carbon nanostructure under heat treatment is critical for tailoring the thermal properties of carbon-based material at small length scales. We investigate the heat resistance of the single carbon nanoball (C60) and carbon nanoonions (C20@C80, C20@C80@C180, C20@C80@C180C320) by performing molecular dynamics simulations. An empirical many-body potential function, Tersoff potential, for carbon is employed to calculate the interaction force among carbon atoms. Simulation results shows that carbon nanoonions are less resistive against heat treatment than single carbon nanoballs. Single carbon nanoballs such C60 can resist heat treatment up to 5600 K, however, carbon nanoonions break down after 5100 K. This intriguing result offers insights into understanding the thermal-mechanical coupling phenomena of nanodevices and the complex process of fullerenes' formation. read less USED (high confidence) S. Khalil, N. Swaminathan, D. Shrader, A. Heim, D. Morgan, and I. Szlufarska, “Diffusion of Ag along Σ 3 grain boundaries in 3C-SiC,” Physical Review B. 2011. link Times cited: 50 Abstract: Ag defects in Σ3 grain boundary of SiC were analyzed to test… read moreAbstract: Ag defects in Σ3 grain boundary of SiC were analyzed to test the hypothesis that Ag release from TRISO fuel particles can occur through grain boundary diffusion. Although Σ3 grain boundaries cannot provide a connected path through the crystal, they are studied here to provide guidance for overall trends in grain boundary vs. bulk Ag transport. Formation energies of Ag defects are found to be 2 − 4 eV lower in the grain boundaries than in the bulk, indicating a strong tendency for Ag to segregate to the grain boundaries. Diffusion of Ag along Σ3 was found to be dramatically faster than through the bulk. At 1600 ◦ C, which is a temperature relevant for TRISO accident conditions, Ag diffusion coefficients are predicted to be 3 . 7 × 10 − 18 m 2 /s and 3 . 9 × 10 − 29 m 2 /s in the Σ3 grain boundary and bulk, respectively. While at this temperature Σ3 diffusion is still two orders of magnitude slower than diffusion estimated from integral release measurements, they values are close enough to suggest that grain boundary diffusion is a plausible mechanism for release of Ag from intact SiC coatings. The remaining discrepancies in the diffusion coefficients could be possibly bridged by considering high-energy grain boundaries, which are expected to have diffusivity faster than Σ3 and which provide a connected percolating path through polycrystalline SiC. } because of the special bulk-like structure of this GB provides an approximate lower bound on diffusion coefficient along GBs in SiC. The results were compared to bulk studies previously reported by Shrader et al . 10 . We found that for a typical grain diameter (0.8 µ m) of SiC used in TRISO application there is a strong segregation of Ag to the Σ3 GB. Specifically, we found that, based on Σ3 energies, the fraction of time that Ag spends in the GB is 99.999% at 1200 ◦ C and 99.988% at 1600 ◦ C. This strong segregation, combined with the slow diffusion in bulk SiC 10 , means that GB pathways will dominate diffusion of this fission product through a polycrystalline SiC (assuming no cracks or pores that enable faster are present). used formation neutral both in GB and in the bulk. read less USED (high confidence) Y. Chihara, M. Yasuda, S. Wakuda, H. Kawata, and Y. Hirai, “Computational study of electron-irradiation effects in carbon nanomaterials on substrates,” Journal of Vacuum Science & Technology. B. Nanotechnology and Microelectronics: Materials, Processing, Measurement, and Phenomena. 2011. link Times cited: 7 Abstract: Molecular dynamics simulation is performed to study electron… read moreAbstract: Molecular dynamics simulation is performed to study electron-irradiation effects in carbon nanomaterials on substrates. The interaction between an incident electron and a carbon atom in target nanomaterials is introduced by the Monte Carlo method. Collisions of the backscattered electrons from the substrate are also introduced. The distributions of energy and the exit angle of backscattered electrons are calculated using Monte Carlo simulation of electron scattering in the substrate. Structural changes become more remarkable when the carbon nanomaterials are on the substrates. The threshold energy and the characteristics of structural changes by backscattered electrons are also discussed. read less USED (high confidence) C. Sevik, H. Sevinçli, G. Cuniberti, and T. Çagin, “Phonon engineering in carbon nanotubes by controlling defect concentration.,” Nano letters. 2011. link Times cited: 100 Abstract: Outstanding thermal transport properties of carbon nanotubes… read moreAbstract: Outstanding thermal transport properties of carbon nanotubes (CNTs) qualify them as possible candidates to be used as thermal management units in electronic devices. However, significant variations in the thermal conductivity (κ) measurements of individual CNTs restrict their utilizations for this purpose. In order to address the possible sources of this large deviation and to propose a route to solve this discrepancy, we systematically investigate the effects of varying concentrations of randomly distributed multiple defects (single and double vacancies, Stone-Wales defects) on the phonon transport properties of armchair and zigzag CNTs with lengths ranging between a few hundred nanometers to several micrometers, using both nonequilibrium molecular dynamics and atomistic Green's function methods. Our results show that, for both armchair and zigzag CNTs, κ converges nearly to the same values with different types of defects, at all lengths considered in this study. On the basis of the detailed mean free path analysis, this behavior is explained with the fact that intermediate and high frequency phonons are filtered out by defect scattering, while low frequency phonons are transmitted quasi-ballistically even for several micrometer long CNTs. Furthermore, an analysis of variances in κ for different defect concentrations indicates that defect scattering at low defect concentrations could be the source of large experimental variances, and by taking advantage of the possibility to create a controlled concentration of defects by electron or ion irradiation, it is possible to standardize κ with minimizing the variance. Our results imply the possibility of phonon engineering in nanostructured graphene based materials by controlling the defect concentration. read less USED (high confidence) X. Tan et al., “Thermoelectric Properties of Ultrasmall Single-Wall Carbon Nanotubes,” Journal of Physical Chemistry C. 2011. link Times cited: 23 Abstract: The electronic transport of three kinds of ultrasmall single… read moreAbstract: The electronic transport of three kinds of ultrasmall single-wall carbon nanotubes are studied by using nonequilibrium Green’s function method. It is found that the transmission function displays a clear stepwise structure that gives the number of electron channels. The calculated power factor of these nanotubes can be optimized to much higher values in a wide temperature range. Using nonequilibrium molecule dynamics simulations, the lattice thermal conductivity of these nanotubes are predicated with quantum correction. Our calculations indicate that the (4,2) tube has relatively higher room temperature figure of merit (ZT value) compared with those of the (5,0) and (3,3) tubes. Moreover, the thermoelectric performance of these nanotubes can be greatly enhanced by surface design, formation of bundles, increasing the tube length, and so on, which significantly reduce the phonon and electron-derived thermal conductance. read less USED (high confidence) K. Mylvaganam and L. Zhang, “Effect of bct-5 Si on the Indentation of Monocrystalline Silicon,” Applied Mechanics and Materials. 2011. link Times cited: 3 Abstract: Mono-crystalline silicon experiences various phase transform… read moreAbstract: Mono-crystalline silicon experiences various phase transformations under different loading conditions. This paper reveals, with the aid of molecular dynamics simulations, that scratching the silicon {001} surface along the [110] direction under a load of 0.8 µN or more would produce stable 5 coordinated body centered tetragonal (bct-5) silicon in the subsurface. By examining the effect of this bct-5 silicon on indentation, it was found that the resistant to deformation of bct-5 silicon is higher than a-Si but lower than diamond Si. read less USED (high confidence) J. Fang and L. Pilon, “Scaling laws for thermal conductivity of crystalline nanoporous silicon based on molecular dynamics simulations,” Journal of Applied Physics. 2011. link Times cited: 38 Abstract: This study establishes that the effective thermal conductivi… read moreAbstract: This study establishes that the effective thermal conductivity keff of crystalline nanoporous silicon is strongly affected not only by the porosity f ν and the system’s length Lz but also by the pore interfacial area concentration Ai. The thermal conductivity of crystalline nanoporous silicon was predicted using non-equilibrium molecular dynamics simulations. The Stillinger-Weber potential for silicon was used to simulate the interatomic interactions. Spherical pores organized in a simple cubic lattice were introduced in a crystalline silicon matrix by removing atoms within selected regions of the simulation cell. Effects of the (i) system length ranging from 13 to 130 nm, (ii) pore diameter varying between 1.74 and 5.86 nm, and (iii) porosity ranging from 8% to 38%, on thermal conductivity were investigated. A physics-based model was also developed by combining kinetic theory and the coherent potential approximation. The effective thermal conductivity was proportional to (1 − 1.5f ν) and inversely propor... read less USED (high confidence) Y. Jing and N. Aluru, “Atomistic simulations on the mechanical properties of a silicon nanofilm covered with graphene,” Computational Materials Science. 2011. link Times cited: 19 USED (high confidence) K. D. Krantzman, E. L. Cook, A. Wucher, and B. Garrison, “A statistical analysis of the lateral displacement of Si atoms in molecular dynamics simulations of successive bombardment with 20-keV C 60 projectiles,” Nuclear Instruments & Methods in Physics Research Section B-beam Interactions With Materials and Atoms. 2011. link Times cited: 5 USED (high confidence) A. Pukrittayakamee, M. Hagan, L. Raff, S. Bukkapatnam, and R. Komanduri, “Practical Training Framework for Fitting a Function and Its Derivatives,” IEEE Transactions on Neural Networks. 2011. link Times cited: 19 Abstract: This paper describes a practical framework for using multila… read moreAbstract: This paper describes a practical framework for using multilayer feedforward neural networks to simultaneously fit both a function and its first derivatives. This framework involves two steps. The first step is to train the network to optimize a performance index, which includes both the error in fitting the function and the error in fitting the derivatives. The second step is to prune the network by removing neurons that cause overfitting and then to retrain it. This paper describes two novel types of overfitting that are only observed when simultaneously fitting both a function and its first derivatives. A new pruning algorithm is proposed to eliminate these types of overfitting. Experimental results show that the pruning algorithm successfully eliminates the overfitting and produces the smoothest responses and the best generalization among all the training algorithms that we have tested. read less USED (high confidence) A. Wucher, A. Kucher, N. Winograd, C. Briner, and K. D. Krantzman, “Sputtered neutral SinCm clusters as a monitor for carbon implantation during C60 bombardment of silicon,” Nuclear Instruments & Methods in Physics Research Section B-beam Interactions With Materials and Atoms. 2011. link Times cited: 5 USED (high confidence) A. Bakaev and E. E. Zhurkin, “Simulation of doping and primary radiation damage to the SiC(111) surface under bombardment by SiN atomic and cluster ions (N = 1, 5, and 60) using classical molecular dynamics,” Journal of Surface Investigation. X-ray, Synchrotron and Neutron Techniques. 2011. link Times cited: 2 USED (high confidence) I. Santos, L. Marqués, P. López, L. Pelaz, and M. Aboy, “Molecular implants and cold implants: Two new strategies for junction formation of future Si devices,” Proceedings of the 8th Spanish Conference on Electron Devices, CDE’2011. 2011. link Times cited: 2 Abstract: In order to fulfill the stringent requirements for ultra-sha… read moreAbstract: In order to fulfill the stringent requirements for ultra-shallow junction formation and proper defect removal needed for future Si devices, molecular and cold implants have arisen as new technological strategies for dopant incorporation. In this work we have used different atomistic simulation techniques within a multiscale scheme to study the phenomena governing the damage generation in these types of implants, and to develop models that can help to optimize the fabrication of future Si devices. read less USED (high confidence) H. Cao, Z. X. Guo, H. Xiang, and X. Gong, “LAYER AND SIZE DEPENDENCE OF THERMAL CONDUCTIVITY IN MULTILAYER GRAPHENE NANORIBBONS,” Physics Letters A. 2011. link Times cited: 100 USED (high confidence) K. Edgar, S. Hendy, D. Schebarchov, and R. Tilley, “Reverse capillary action in carbon nanotubes: sucking metal nanoparticles out of nanotubes.,” Small. 2011. link Times cited: 13 USED (high confidence) J. Timoshenko, A. Kuzmin, and J. Purāns, “Molecular dynamics simulations of EXAFS in germanium,” Central European Journal of Physics. 2011. link Times cited: 15 Abstract: Classical molecular dynamics simulations have been performed… read moreAbstract: Classical molecular dynamics simulations have been performed for crystalline germanium with the aim to estimate the thermal effects within the first three coordination shells and their influence on the single-scattering and multiple-scattering contributions to the Ge K-edge extended x-ray absorption fine structure (EXAFS). read less USED (high confidence) R. Grantab and V. Shenoy, “The key role of nanoscale surface facets on the mechanical strength and failure of wurtzite and periodically twinned zinc-blende nanowires,” Philosophical Magazine Letters. 2011. link Times cited: 4 Abstract: Using molecular dynamics, we study the role of the surface f… read moreAbstract: Using molecular dynamics, we study the role of the surface facets of III–V nanowires on their failure during tensile deformation. We find that wurtzite (WZ) nanowires can withstand higher levels of stress and strain at failure compared to zinc-blende (ZB) nanowires. We observe that it is easier to nucleate a crack on a ZB nanowire due to the stress singularities that occur at the intersection of two opposing {111} facets. In WZ nanowires, we observe that cracks always nucleate at the intersection between two adjacent {112} surface facets. We explain these phenomena using fracture mechanics techniques based on energetics of crack formation. read less USED (high confidence) Y. He, D. Donadio, J.-H. Lee, J. Grossman, and G. Galli, “Thermal transport in nanoporous silicon: interplay between disorder at mesoscopic and atomic scales.,” ACS nano. 2011. link Times cited: 116 Abstract: We present molecular and lattice dynamics calculations of th… read moreAbstract: We present molecular and lattice dynamics calculations of the thermal conductivity of nanoporous silicon, and we show that it may attain values 10-20 times smaller than in bulk Si for porosities and surface-to-volume ratios similar to those obtained in recently fabricated nanomeshes. Further reduction of almost an order of magnitude is obtained in thin films with thickness of 20 nm, in agreement with experiment. We show that the presence of pores has two main effects on heat carriers: appearance of non-propagating, diffusive modes and reduction of the group velocity of propagating modes. The former effect is enhanced by the presence of disorder at the pore surfaces, while the latter is enhanced by decreasing film thickness. read less USED (high confidence) V. Sorkin and Y. Zhang, “Graphene-based pressure nano-sensors,” Journal of Molecular Modeling. 2011. link Times cited: 66 USED (high confidence) I. Takahashi, N. Usami, H. Mizuseki, Y. Kawazoe, G. Stokkan, and K. Nakajima, “Impact of type of crystal defects in multicrystalline Si on electrical properties and interaction with impurities,” Journal of Applied Physics. 2011. link Times cited: 27 Abstract: We investigated impact of type of crystal defects in multicr… read moreAbstract: We investigated impact of type of crystal defects in multicrystalline Si (mc-Si) on electrical properties and their change after gettering process of impurities. A bundle of dislocations gives negative impact on the gettering process, while Σ3 grain boundaries does not affect at all. In addition, we categorized random grain boundaries in mc-Si by the contact angle between adjacent dendrite crystals to form the grain boundary. Change in the contrast of photoluminescence intensity around the grain boundary was found to systematically vary by the contact angle, which showed good correlation with calculated interface energy of the grain boundary. Grain boundaries with low interface energy are concluded to be preferable to weaken recombination activity by the gettering process and improvement of solar cell performance based on mc-Si. read less USED (high confidence) A.-P. Prskalo, S. Schmauder, C. Ziebert, J. Ye, and S. Ulrich, “Molecular dynamics simulations of the sputtering process of silicon and the homoepitaxial growth of a Si coating on silicon,” Computational Materials Science. 2011. link Times cited: 11 USED (high confidence) T. Luo and J. Lloyd, “Molecular dynamics study of thermal transport in GaAs-self-assembly monolayer-GaAs junctions with ab initio characterization of thiol-GaAs bonds,” Journal of Applied Physics. 2011. link Times cited: 33 Abstract: Thermal dissipation in molecular electronic devices is a cri… read moreAbstract: Thermal dissipation in molecular electronic devices is a critical issue for the proper functioning of such devices. In this work, molecular dynamics (MD) simulations were carried out to study the thermal energy transport in GaAs-SAM (self-assembly monolayer)-GaAs junctions, with alkanedithiols being the SAM molecules. In order to characterize the molecule-GaAs interface, ab initio density functional theory (DFT) was used to study the structural and binding properties of alkanethiolates on GaAs(001) surfaces. Parameters of classical potentials, which were used to model the molecule-GaAs interactions, were obtained by fitting to the results from the DFT calculations. Then, nonequilibrium MD (NEMD) simulations were performed to reveal the GaAs-SAM interfacial thermal conductance at different temperatures. The results from this work showed that the GaAs-SAM interfaces are the major sources of thermal resistance in the GaAs-SAM-GaAs junctions. The delocalized phonon modes carry thermal energy efficiently insid... read less USED (high confidence) D. Konatham, K. Bui, D. Papavassiliou, and A. Striolo, “Simulation insights into thermally conductive graphene-based nanocomposites,” Molecular Physics. 2011. link Times cited: 54 Abstract: Dispersing nanoparticles in a polymer can enhance both mecha… read moreAbstract: Dispersing nanoparticles in a polymer can enhance both mechanical and transport properties. Nanocomposites with high thermal conductivity could be obtained by using thermally conductive nanoparticles. Carbon-based nanoparticles are extremely promising, although high resistances to heat transfer from the nanoparticles to the polymer matrix could cause significant limitations. This work focuses on graphene sheets (GS) dispersed within n-octane. Although pristine GS agglomerate, equilibrium molecular dynamic simulations suggest that when the GS are functionalized with short branched hydrocarbons along the GS edges, they remain well dispersed. Results are reported from equilibrium and non-equilibrium molecular dynamics simulations to assess the effective interactions between dispersed GS, the self-assembly of GS, and the heat transfer through the GS–octane nanocomposite. Tools are designed to understand the effect of GS size, solvent molecular weight and molecular architecture on GS dispersability and GS–octane thermal conductivity. Evidence is provided for the formation of nematic phases when the GS volume fraction increases within octane. The atomic-level results are input for a coarse-grained Monte Carlo simulation that predicts anisotropic thermal conductivity for GS-based composites when the GS show nematic phases. read less USED (high confidence) J. Kang, O. Kwon, H. Hwang, and Q. Jiang, “Resonance frequency distribution of cantilevered (5,5)(10,10) double-walled carbon nanotube with different intertube lengths,” Molecular Simulation. 2011. link Times cited: 4 Abstract: Analysis of ultrahigh frequency nanomechanical resonators, w… read moreAbstract: Analysis of ultrahigh frequency nanomechanical resonators, which are based on double-walled carbon nanotubes (DWCNTs) with various wall lengths, was carried out via classical molecular dynamics simulations. In the case of the inner wall entirely encapsulated inside the outer wall, the outer wall vibration has a significant effect on the vibration of the DWCNT; while in the case of the inner wall longer than the outer wall, the vibration of the extruded inner wall has a substantially stronger effect on the DWCNT vibration. It is shown that variations of the DWCNT resonance frequency with different wall lengths can be well fitted by Pearson VII and Gauss distribution functions. This result is potentially useful for developing design guidelines for making very fine tuners using DWCNT resonators of various wall lengths. read less USED (high confidence) S. Munetoh, X. Ping, T. Ogata, T. Motooka, and R. Teranishi, “Excimer laser crystallization processes of amorphous silicon thin films by using molecular-dynamics simulations,” Isij International. 2010. link Times cited: 3 USED (high confidence) J. Guo, B. Wen, R. Melnik, S. Yao, and T. Li, “Geometry and temperature dependent thermal conductivity of diamond nanowires: A non-equilibrium molecular dynamics study,” Physica E-low-dimensional Systems & Nanostructures. 2010. link Times cited: 33 USED (high confidence) Y. Long, J. Chen, Y. G. Liu, F. Nie, and J. Sun, “A MD-based method to calculate free energy for crystalline structures: from basic theory to application,” Journal of Physics A: Mathematical and Theoretical. 2010. link Times cited: 1 Abstract: Free energy calculation is a challenging problem in molecula… read moreAbstract: Free energy calculation is a challenging problem in molecular dynamics (MD). Its key issue is to get entropy. However, entropy seems difficult to be obtained by MD directly, but requires support from other methods, such as phonon theory and cluster variation method, etc. In this work, we find a way to obtain free energy by a single MD task. It is derived from phonon theory and fluctuation theory first, and then we prove that it does not rely on phonon theory but can be independent. Finally, we use this method to study Si, find the results in agreement with experiment. read less USED (high confidence) V. G. Kornich, G. Betz, G. V. Kornich, and V. Shulga, “Interaction of low-energy Cu2 dimers with copper clusters on the graphite surface,” Physics of the Solid State. 2010. link Times cited: 1 USED (high confidence) N. R. Tummala, B. Grady, and A. Striolo, “Lateral confinement effects on the structural properties of surfactant aggregates: SDS on graphene.,” Physical chemistry chemical physics : PCCP. 2010. link Times cited: 49 Abstract: The structure of aqueous sodium dodecyl sulfate (SDS) surfac… read moreAbstract: The structure of aqueous sodium dodecyl sulfate (SDS) surfactant aggregates formed on small graphene sheets and graphene nanoribbons has been studied using all-atom molecular dynamics simulations. Because the edges of the carbonaceous supports confine laterally the surfactant aggregates, by changing the size of the support (diameter of graphene sheets and width of graphene nanoribbons) it is possible to investigate lateral confinement effects on the aggregate morphology. The results are compared to those available on graphite, with no lateral confinement. Aqueous SDS aggregates were studied on 2.0 nm, 5.0 nm, and 10.0 nm circular graphene sheets and on 2.0 and 5.0 nm wide graphene nanoribbons. For the first time our results show that, because of lateral confinement provided by the graphene edges, SDS yields multiple layers, hemispheres, hemicylinders or multiple hemispheres depending on the graphene size and shape. Results are quantified in terms of morphology of the surfactant aggregates, order parameter of the adsorbed surfactant aggregates, and number of water molecules at contact with the carbonaceous support. read less USED (high confidence) J. Bai, H. Tanaka, and X. Zeng, “Graphene-like bilayer hexagonal silicon polymorph,” Nano Research. 2010. link Times cited: 42 USED (high confidence) K. Kang and W. Cai, “Size and temperature effects on the fracture mechanisms of silicon nanowires: Molecular dynamics simulations,” International Journal of Plasticity. 2010. link Times cited: 136 USED (high confidence) V. Haxha et al., “Control of strain in GaSbAs/InAs/GaAs quantum dots.” 2010. link Times cited: 5 Abstract: We discuss strain simulations of quantum dot structures cove… read moreAbstract: We discuss strain simulations of quantum dot structures covered with a GaSbAs strain reducing capping layer in the presence of Sb segregation. Cross Sectional Scanning Tunneling Microscopy shows strong Sb and In segregation in the material surrounding the quantum dot. Using the three layer model originally proposed for the SiGe system by D. J. Godbey, M. G. Ancona, J. Vac. Sci. Technol. A 15, 976 (1997) we accurately calculate the segregation profile and include a non uniform composition to our models. Using atomistic modeling, we present strain maps of the quantum dot structures that show the propagation of the strain into the GaAs region is strongly affected by the shape and composition of the strain reduction layer. read less USED (high confidence) H. S. Park, “A multiscale finite element method for the dynamic analysis of surface‐dominated nanomaterials,” International Journal for Numerical Methods in Engineering. 2010. link Times cited: 5 Abstract: The purpose of this article is to present a multiscale finit… read moreAbstract: The purpose of this article is to present a multiscale finite element method that captures nanoscale surface stress effects on the dynamic mechanical behavior of nanomaterials. The method is based upon arguments from crystal elasticity, i.e. the Cauchy–Born rule, but significantly extends the capability of the standard Cauchy–Born rule by accounting for critical nanoscale surface stress effects, which are well known to have a significant effect on the mechanics of crystalline nanostructures. We present the governing equations of motion including surface stress effects, and demonstrate that the methodology is general and thus enables simulations of both metallic and semiconducting nanostructures. The numerical examples on elastic wave propagation and dynamic tensile and compressive loading show the ability of the proposed approach to capture surface stress effects on the dynamic behavior of both metallic and semiconducting nanowires, and demonstrate the advantages of the proposed approach in studying the deformation of nanostructures at strain rates and time scales that are inaccessible to classical molecular dynamics simulations. Copyright © 2010 John Wiley & Sons, Ltd. read less USED (high confidence) R. Jones, J. Templeton, G. Wagner, D. Olmsted, and N. A. Modine, “Electron transport enhanced molecular dynamics for metals and semi‐metals,” International Journal for Numerical Methods in Engineering. 2010. link Times cited: 21 Abstract: In this work we extend classical molecular dynamics by coupl… read moreAbstract: In this work we extend classical molecular dynamics by coupling it with an electron transport model known as the two temperature model. This energy balance between free electrons and phonons was first proposed in 1956 by Kaganov et al. but has recently been utilized as a framework for coupling molecular dynamics to a continuum description of electron transport. Using finite element domain decomposition techniques from our previous work as a basis, we develop a coupling scheme that preserves energy and has local control of temperature and energy flux via a Gaussian isokinetic thermostat. Unlike the previous work on this subject, we employ an efficient, implicit time integrator for the fast electron transport which enables larger stable time steps than the explicit schemes commonly used. A number of example simulations are given that validate the method, including Joule heating of a copper nanowire and laser excitation of a suspended carbon nanotube with its ends embedded in a conducting substrate. Published in 2010 by John Wiley & Sons, Ltd. read less USED (high confidence) C. Bealing, G. Fugallo, R. Martoňák, and C. Molteni, “Constant pressure molecular dynamics simulations for ellipsoidal, cylindrical and cuboidal nano-objects based on inertia tensor information.,” Physical chemistry chemical physics : PCCP. 2010. link Times cited: 8 Abstract: We present an extension to a constant-pressure molecular dyn… read moreAbstract: We present an extension to a constant-pressure molecular dynamics method for ellipsoidal finite systems that allows one to deal with nano-objects of cylindrical and cuboidal shapes. The method is based on the inclusion of a pressure x volume term in the system Lagrangian, where the volume is defined as a function of the eigenvalues of the inertia tensor. We illustrate how such a method works for selected systems, including CdSe nanocrystals and nanorods, carbon nanotubes and NaCl nanocrystals over a range of pressures. We also assess its performance in comparison with the use of an auxiliary pressure transmitting medium. read less USED (high confidence) Z. Guo, D. Zhang, Y.-teng Zhai, and X. Gong, “The intriguing thermal conductivity of ice nanotubes,” Nanotechnology. 2010. link Times cited: 10 Abstract: We have investigated the thermal conductivity of various ice… read moreAbstract: We have investigated the thermal conductivity of various ice nanotubes (Ice-NTs) using the nonequilibrium molecular dynamics method. The results indicate that Ice-NTs have an unusually high thermal conductivity compared to that of the bulk ices. The thermal conductivity is sensitive to temperature, tube length and diameter, while being insensitive to polarization. We have also studied the confinement effect from single-walled carbon nanotubes (SWCNs). A very remarkable increase in the thermal conductivity is further observed after the Ice-NTs are confined in SWCNs. read less USED (high confidence) C. Das et al., “Direct observation of amophization in load rate dependent nanoindentation studies of crystalline Si,” Applied Physics Letters. 2010. link Times cited: 26 Abstract: Indentation at very low load rate showed region of constant … read moreAbstract: Indentation at very low load rate showed region of constant volume with releasing load in crystalline (c-)Si, indicating a direct observation of liquidlike amorphous phase which is incompressible under pressure. Signature of amorphization is also confirmed from load dependent indentation study where increased amount of amorphized phase is made responsible for the increasing elastic recovery of the sample with increasing load. Ex situ Raman study confirmed the presence of amorphous phase at the center of indentation. The molecular dynamic simulation has been employed to demonstrate that the effect of indentation velocities has a direct influence on c-Si during nanoindentation processes. read less USED (high confidence) J. Kang, O. Kwon, K.-sub Kim, J. H. Lee, E. Kang, and H. Hwang, “Intertube spacing effect of cantilevered double-walled carbon nanotube resonators with short outer tubes,” Modelling and Simulation in Materials Science and Engineering. 2010. link Times cited: 5 Abstract: The vibrational properties of various double-walled carbon n… read moreAbstract: The vibrational properties of various double-walled carbon nanotube resonators were investigated via a classical molecular dynamics approach. The fundamental frequencies of double-walled carbon nanotube resonators with short outer tubes were closely related to the intertube spacing and the chirality of the outer tubes. Even though the length of the outer tube was 1 nm, the vibration of the outer tube affected that of the inner tube. For nanotubes with similar intertube spacing, both maximum frequencies were similar. For their corresponding maximum frequencies, the lengths of the outer tubes of the zigzag nanotubes were slightly less than those of the armchair ones. read less USED (high confidence) J. Kang, K. Byun, O. Kwon, Y. G. Choi, and H. Hwang, “Gigahertz frequency tuner based on a telescoping double-walled carbon nanotube: molecular dynamics simulations,” Molecular Simulation. 2010. link Times cited: 8 Abstract: The schematics of a gigahertz-range tuner is addressed as an… read moreAbstract: The schematics of a gigahertz-range tuner is addressed as an application of a telescoping multi-walled carbon nanotube (CNT) that can be used repeatedly, and its dynamic operation is investigated via classical molecular dynamics simulations based on a (5,5)(10,10) double-walled CNT. Fine control of the telescoped length of the double-walled CNT enables its resonance frequency to be matched to one of the signal frequencies, and the telescoped nanotube can be tuned to its resonance frequency for use as a component of a bandpass filter. read less USED (high confidence) A. Liu, K. W. Wang, and C. Bakis, “Damping Characteristics of Carbon Nanotube-Epoxy Composites via Multiscale Analysis.” 2010. link Times cited: 6 Abstract: In this paper, the damping characteristics of epoxy resin co… read moreAbstract: In this paper, the damping characteristics of epoxy resin containing aligned or randomly oriented carbon nanotube (CNT) ropes are investigated via a multiscale analysis approach. The shear strengths at the inter-tube and tube-resi n interfaces are calculated using molecular dynamics simulations of nanotube pullouts before being applied to a micromechanical damping model. In the micromechanical model, the composite is described as a three-phase system composed of a resin, a resi n sheath acting as a shear transfer zone, and a carbon nanotube rope. The concept of stick-slip motion is used to describe the load transfer behavior between carbon nanotubes in a rope as well as between nanotubes and the surrounding sheath. Both the energy dissipations f rom the viscoelastic polymer matrix and from the stick-slip motion are included in the over all structural damping characteristics. The effect of nanorope alignment on damping characteristics is also presented. Nomenclature 1 E = Young’s modulus in three-element standard solid model for viscoelastic resin 2 E = Young’s modulus in three-element standard solid model for viscoelastic resin eq E = equivalent Yong’s modulus for carbon nanotube as a solid cylinder rp f = volume fraction of carbon nanotube rope G = complex shear modulus of viscoelastic resin eq G = equivalent shear modulus for carbon nanotube as a solid cylinder K = bulk modulus of viscoelastic resin a L = length of composite unit cell nt L = length of carbon nanotube eff t s l - = effective length of SWNT/sheath debonding nt R = radius of carbon nanotube rp R = radius of carbon nanotube rope sh R = outer radius of the sheath a read less USED (high confidence) A. Guajardo-Cuéllar, D. Go, and M. Sen, “Evaluation of heat current formulations for equilibrium molecular dynamics calculations of thermal conductivity.,” The Journal of chemical physics. 2010. link Times cited: 24 Abstract: Equilibrium molecular dynamics combined with the Green-Kubo … read moreAbstract: Equilibrium molecular dynamics combined with the Green-Kubo formula can be used to calculate the thermal conductivity of materials such as germanium and carbon. The foundation of this calculation is extracting the heat current from the results and implementing it into the Green-Kubo formula. This work considers all formulations from the literature that calculate the heat current for the Tersoff potential, the interatomic potential most applicable to semiconductor materials. The formulations for the heat current are described, and results for germanium and carbon are presented. The formulations are compared with respect to how well they capture the physics of the Tersoff potential and how well the calculated value of the thermal conductivity reflects the experimentally measured value. read less USED (high confidence) Y.-bo Guo, Y. Liang, M. Chen, Q. Bai, and L. Lu, “Molecular dynamics simulations of thermal effects in nanometric cutting process,” Science China Technological Sciences. 2010. link Times cited: 34 USED (high confidence) P. Agrawal, L. Raff, S. Bukkapatnam, and R. Komanduri, “Molecular dynamics investigations on polishing of a silicon wafer with a diamond abrasive,” Applied Physics A. 2010. link Times cited: 26 USED (high confidence) M. Caymax et al., “The Influence of the Epitaxial Growth Process Parameters on Layer Characteristics and Device Performance in Si-passivated Ge pMOSFETs,” ECS Transactions. 2009. link Times cited: 24 Abstract: Recently, the best 65 nm Ge p-channel metal-oxide-semiconduc… read moreAbstract: Recently, the best 65 nm Ge p-channel metal-oxide-semiconductor field-effect transistor (pMOSFET) performance has been reported with a standard Si complementary metal-oxide-semiconductor HfO 2 gate stack module. The Ge passivation is based on a thin, fully strained epitaxial Si layer grown on the Ge surface. We investigate in more detail how the device performance (hole mobility, I on , D it, V t , etc.) depends on the characteristics of this Si layer. We found that surface segregation of Ge through the Si layer takes place during the growth, which turns out to be determining for the interfacial trap density and distribution in the finalized gate stack. Based on a better understanding of the fundamentals of the Si deposition process, we optimize the process by switching to another Si precursor and lowering the deposition temperature. This results in a 4 times lower D it and improved device performance. read less USED (high confidence) X. Guan et al., “Simulation study of switching mechanism in carbon-based resistive memory with molecular dynamics and Extended Hückel Theory-based NEGF method,” 2009 IEEE International Electron Devices Meeting (IEDM). 2009. link Times cited: 7 Abstract: Switching processes of carbon-based resistive memory cells a… read moreAbstract: Switching processes of carbon-based resistive memory cells are simulated on a fully atomistic level by the molecular dynamics (MD) method and the Extended-Hückel-Theory-based Non Equilibrium Green's Function (EHT-NEGF) method. Graphitic filament breakage and re-growth are found to be responsible for the switching of resistance of carbon-based memory. Key parameters that affect the switching speed of a memory cell are studied and trade-off between speed and power is discussed. read less USED (high confidence) A. Harjunmaa and K. Nordlund, “Molecular dynamics simulations of Si/Ge cluster condensation,” Computational Materials Science. 2009. link Times cited: 19 USED (high confidence) L. I. Ovsyannikova, V. Pokropivny, and V. Bekenev, “Electronic structure of crystal-forming fullerenes C2n, fulsicenes SinCn, and their crystals—Fulsicenites,” Physics of the Solid State. 2009. link Times cited: 7 USED (high confidence) S. Satake, S. Momota, S. Yamashina, M. Shibahara, and J. Taniguchi, “Surface deformation of Ar+ ion collision process via molecular dynamics simulation with comparison to experiment,” Journal of Applied Physics. 2009. link Times cited: 7 Abstract: Molecular dynamics simulations of Ar ion collision on a Si s… read moreAbstract: Molecular dynamics simulations of Ar ion collision on a Si surface using an optimized potential function were carried out in the case of the acceleration voltages of 50keV for Ar ions. A hillock structure was formed by the Ar ion impact on the Si surface. The height of the structure calculated by the simulations corresponded to those of the experiments. The height of the structure was found to be proportional to the fluence of Ar ions. The amorphous structural region was expanded by the progress of the interface region between the amorphous structure and the crystalline structure with increasing the fluence in the depth direction. read less USED (high confidence) L. Pizzagalli, J. Godet, and S. Brochard, “Glissile dislocations with transient cores in silicon.,” Physical review letters. 2009. link Times cited: 31 Abstract: We report an unexpected characteristic of dislocation cores … read moreAbstract: We report an unexpected characteristic of dislocation cores in silicon. Using first-principles calculations, we show that all of the stable core configurations for a nondissociated 60 degrees dislocation are sessile. The only glissile configuration, previously obtained by nucleation from surfaces, surprisingly corresponds to an unstable core. As a result, the 60 degrees dislocation motion is solely driven by stress, with no thermal activation. We predict that this original feature could be relevant in situations for which large stresses occur, such as mechanical deformation at room temperature. Our work also suggests that postmortem observations of stable dislocations could be misleading and that mobile unstable dislocation cores should be taken into account in theoretical investigations. read less USED (high confidence) C. Bing, Z. Wei, H. Ping, and Z. Zhi-yuan, “Theoretical Study on the Propagation of Acoustic Phonon Modes in Single-Wall Carbon Nanotubes by Different Potential Models,” Chinese Physics Letters. 2009. link Times cited: 0 Abstract: Propagation of a heat pulse in (10,0) zig-zag carbon nanotub… read moreAbstract: Propagation of a heat pulse in (10,0) zig-zag carbon nanotubes, modeled by the Brenner-II and Tersoff bond-order potentials, respectively, is investigated using a molecular dynamics simulation. The longitudinal acoustic mode, twisting phonon mode, and second sound waves are observed in the simulation. The time variations of speed and intensity of the above three phonon modes are in good agreement with the previous works based on the Brenner-I potential. Higher speed and weaker peak intensity are observed in the simulation of the Tersoff potential. The inherent over-binding of radicals and the non-local effects in Tersoff's covalent-bonding formula may play an important role in the heat pulse propagating simulation. read less USED (high confidence) K. Mylvaganam, L. Zhang, P. Eyben, J. Mody, and W. Vandervorst, “Evolution of metastable phases in silicon during nanoindentation: mechanism analysis and experimental verification,” Nanotechnology. 2009. link Times cited: 114 Abstract: This paper explores the evolution mechanisms of metastable p… read moreAbstract: This paper explores the evolution mechanisms of metastable phases during the nanoindentation on monocrystalline silicon. Both the molecular dynamics (MD) and the in situ scanning spreading resistance microscopy (SSRM) analyses were carried out on Si(100) orientation, and for the first time, experimental verification was achieved quantitatively at the same nanoscopic scale. It was found that under equivalent indentation loads, the MD prediction agrees extremely well with the result experimentally measured using SSRM, in terms of the depth of the residual indentation marks and the onset, evolution and dimension variation of the metastable phases, such as β-Sn. A new six-coordinated silicon phase, Si-XIII, transformed directly from Si-I was discovered. The investigation showed that there is a critical size of contact between the indenter and silicon, beyond which a crystal particle of distorted diamond structure will emerge in between the indenter and the amorphous phase upon unloading. read less USED (high confidence) L. Shen and Z. Chen, “Model-based simulation of the responses of ultrananocrystalline diamond and nano structures,” International Conference on Smart Materials and Nanotechnology in Engineering. 2009. link Times cited: 0 Abstract: Owing to their outstanding mechanical, tribological, electro… read moreAbstract: Owing to their outstanding mechanical, tribological, electronic transport, chemical and biocompatibility properties, the ultrananocrystalline diamond (UNCD) films grown by the microwave plasma chemical vapor deposition method under hydrogen-poor conditions have become the subject of intense research interests over the past decade. Based on the available computational capabilities and experimental data, a combined kinetic Monte Carlo (KMC) and molecular dynamics (MD) procedure has been developed for large-scale atomistic simulation of the responses of polycrystalline UNCD films under various loading conditions. The mechanical responses of resulting UNCD film have been investigated by applying displacement-controlled loading in the MD simulation box. Recently, a systematic study is being performed to understand the combined effects of grain size, loading rate, temperature, imperfection, loading path and history on the material strengths and failure patterns of both pure and nitrogen-doped UNCD films. Furthermore, recent MD simulation results of the notch size effect on the failure mechanism of nano-scale hierarchical structures consisting of one-dimensional members arranged in parallel will also be discussed to better design MEMS devices. read less USED (high confidence) T. Mueller and G. Ceder, “Bayesian approach to cluster expansions.” 2009. link Times cited: 91 Abstract: Cluster expansions have proven to be a valuable tool in allo… read moreAbstract: Cluster expansions have proven to be a valuable tool in alloy theory and other problems in materials science but the generation of cluster expansions can be a computationally expensive and time-consuming process. We present a Bayesian framework for developing cluster expansions that explicitly incorporates physical insight into the fitting procedure. We demonstrate how existing methods fit within this framework and use the framework to develop methods that significantly improve the predictive power of cluster expansions for a given training set size. The key to the methods is to apply physical insight and cross validation to develop physically meaningful prior probability distributions for the cluster expansion coefficients. We use the Bayesian approach to develop an efficient method for generating cluster expansions for low-symmetry systems such as surfaces and nanoparticles. read less USED (high confidence) Z. Guo and X. Gong, “Molecular dynamics studies on the thermal conductivity of single-walled carbon nanotubes,” Frontiers of Physics in China. 2009. link Times cited: 20 USED (high confidence) D. Şopu, K. Albe, Y. Ritter, and H. Gleiter, “From nanoglasses to bulk massive glasses,” Applied Physics Letters. 2009. link Times cited: 78 Abstract: Molecular dynamics simulations are presented that provide ev… read moreAbstract: Molecular dynamics simulations are presented that provide evidence for the existence of diluted interfaces in nanoglasses, which is a class of material that can be synthesized by consolidating glassy nanoparticles. By comparing simulations of a covalently bonded Ge nanoglass and a metallic CuZr nanoglass, we show that the delocalization of the excess free volume initially located within the interfaces depends on the flow strain of the material. Our results suggest that the density distribution within a nanoglass can be controlled by the initial particle size and the annealing conditions. Therefore, nanoglasses represent an alternative route for controlling the properties of glassy materials. read less USED (high confidence) S. Duffe, “Thermally activated processes and electronic properties of size selected Ag clusters and grown metal islands on C60 functionalized surfaces.” 2009. link Times cited: 1 Abstract: The low energy deposition of silver cluster cations with 561… read moreAbstract: The low energy deposition of silver cluster cations with 561 (±5) atoms on a cold fullerene covered gold surface has been studied bot h y scanning tunneling microscopy and molecular dynamics simulation. The s p cial properties of the C60/Au(111) surface result in a noticeable fixation of the clusters without a significant change of the cluster shape. Upon heati ng to room temperature we observe a flattening or shrinking of the cluster sa mples due to thermal activation. Similar changes were observed also for mass selecte d Ag clusters with other sizes. For comparison we also studied Ag islands of simila r size, grown by low temperature deposition of Ag atoms and subsequent a n ealing. A completely different behavior is observed with much broader si ze distributions and a qualitatively different response to annealing. [2] Stefanie Duffe, Lukas Patryarcha, Benedikt Sieb en, Chunrong Yin, Bernd von Issendorff, Michael Moseler, and Heinz Hövel, Finite size effect for the penetration of nanoscopi barriers in metal-carbon systems , submitted for publication Abstract: Room temperature (RT) nanostructure stability is of paramount importance for applications in catalysis [3,4], sensors [5] or mag netic recording devises [6]. Metal particles on carbon nanosubstrates are of par ticular interest [7,8]. Here, a well defined representative is studied. Size select d Ag309±3 clusters were softlanded on C60 films supported on Au(111) and graphite is studied . For one monolayer (ML) C60 on Au(111), the Ag clusters shrunk within minutes at RT. Two ML C60 on Au(111) or the use of HOPG below one ML C 60 stabilizes the clusters over days at RT. Supported by atomistic ca lculations these results reveal a finite-size effect for the penetration of a nanosco pi barrier in which ametal dimmer, still in contact with the metal cluster, ge ts into the attractive potential of the metal substrate. This lowers the energy barrier for an atom-by-atom cluster decay at RT. Similar effects will be important for ther nanosystems in technology or biology. Room temperature (RT) nanostructure stability is of paramount importance for applications in catalysis [3,4], sensors [5] or mag netic recording devises [6]. Metal particles on carbon nanosubstrates are of par ticular interest [7,8]. Here, a well defined representative is studied. Size select d Ag309±3 clusters were softlanded on C60 films supported on Au(111) and graphite is studied . For one monolayer (ML) C60 on Au(111), the Ag clusters shrunk within minutes at RT. Two ML C60 on Au(111) or the use of HOPG below one ML C 60 stabilizes the clusters over days at RT. Supported by atomistic ca lculations these results reveal a finite-size effect for the penetration of a nanosco pi barrier in which ametal dimmer, still in contact with the metal cluster, ge ts into the attractive potential of the metal substrate. This lowers the energy barrier for an atom-by-atom cluster decay at RT. Similar effects will be important for ther nanosystems in technology or biology. read less USED (high confidence) B. Yildiz, A. Nikiforova, and S. Yip, “METALLIC INTERFACES IN HARSH CHEMO-MECHANICAL ENVIRONMENTS,” Nuclear Engineering and Technology. 2009. link Times cited: 1 Abstract: The use of multiscale modeling concepts and simulation techn… read moreAbstract: The use of multiscale modeling concepts and simulation techniques to study the destabilization of an ultrathin layer of oxide interface between a metal substrate and the surrounding environment is considered. Of particular interest are chemomechanical behavior of this interface in the context of a molecular-level description of stress corrosion cracking. Motivated by our previous molecular dynamics simulations of unit processes in materials strength and toughness, we examine the challenges of dealing with chemical reactivity on an equal footing with mechanical deformation, (a) understanding electron transfer processes using first-principles methods, (b) modeling cation transport and associated charged defect migration kinetics, and (c) simulation of pit nucleation and intergranular deformation to initiate the breakdown of the oxide interlayer. These problems illustrate a level of multi-scale complexity that would be practically impossible to attack by other means; they also point to a perspective framework that could guide future research in the broad computational science community. read less USED (high confidence) X. Han, Y.-zhong Hu, and S. Yu, “Investigation of material removal mechanism of silicon wafer in the chemical mechanical polishing process using molecular dynamics simulation method,” Applied Physics A. 2009. link Times cited: 67 USED (high confidence) R. Gatti, A. Marzegalli, V. Zinovyev, F. Montalenti, and L. Miglio, “Modeling the plastic relaxation onset in realistic SiGe islands on Si(001),” Physical Review B. 2008. link Times cited: 55 Abstract: A detailed investigation of plastic relaxation onset in hete… read moreAbstract: A detailed investigation of plastic relaxation onset in heteroepitaxial SiGe islands on Si(001) is presented. The strain field induced by a straight misfit-dislocation segment is modeled by finite-element-method (FEM) calculations in three dimensions, fully taking into account the interaction with the multifaceted free surfaces of realistic islands. The total elastic energies before and after the placement of a $60\ifmmode^\circ\else\textdegree\fi{}$ dislocation segment in the most favorable position are therefore evaluated by a full FEM approach, for different island sizes and compositions. The critical volumes with composition for inserting the dislocation are finally obtained and successfully compared with the data in a report by Marzegalli et al. [Phys. Rev. Lett. 99, 235505 (2007)], where experimental values are compared to a simpler approach. read less USED (high confidence) K. Mylvaganam and L. Zhang, “Scale Effect of Nano-Indentation of Silicon – A Molecular Dynamics Investigation,” Key Engineering Materials. 2008. link Times cited: 6 Abstract: This paper investigates the scale effect of indenter tip rad… read moreAbstract: This paper investigates the scale effect of indenter tip radius on the deformation of silicon under nanoindentation using molecular dynamics simulation. It was found that with larger diamond tips a six-coordinated silicon phase different from β-silicon on loading and a diamond like crystal beneath the indenter on unloading would appear as a result of the indentation stressing. This is a new phenomenon that has not been observed previously. read less USED (high confidence) T. Qi-heng, “Molecular Dynamics Study of Mechanical Behaviour of Screw Dislocation during Cutting with Diamond Tip on Silicon,” Chinese Physics Letters. 2008. link Times cited: 3 Abstract: By means of Tersoff and Morse potentials, a three-dimensiona… read moreAbstract: By means of Tersoff and Morse potentials, a three-dimensional molecular dynamics simulation is performed to study atomic force microscopy cutting on silicon monocrystal surface. The interatomic forces between the workpiece and the pin tool and the atoms of workpiece themselves are calculated. A screw dislocation is introduced into workpiece Si. It is found that motion of dislocations does not occur during the atomic force microscopy cutting processing. Simulation results show that the shear stress acting on dislocation is far below the yield strength of Si. read less USED (high confidence) J. Kang and J. H. Lee, “Frequency characteristics of triple-walled carbon nanotube gigahertz devices,” Nanotechnology. 2008. link Times cited: 15 Abstract: We explore the frequency characteristics of triple-walled ca… read moreAbstract: We explore the frequency characteristics of triple-walled carbon nanotube (TWCNT) oscillators using molecular dynamics simulations. The fast Fourier transform results of the TWCNT oscillators show both primary (f1) and minor (f2) peaks. The frequency characteristics of TWCNT oscillators are closely related to the amplitude (A1) of the primary peak. Both f1 and f2 linearly increase as a function of A1 for A1−0.5<0.45, whereas f1 and f2 slightly decrease as a function of A1 for A1−0.5>0.45. f1 for all TWCNT oscillators is always less than the frequency of the double-walled CNT oscillators, while f2 is less than the operating frequencies of double-walled CNT oscillators for A1−0.5<0.3. As a function of A1−0.5, f2 was almost two times higher than f1. read less USED (high confidence) D. E. Kim and S.-I. Oh, “Deformation pathway to high-pressure phases of silicon during nanoindentation,” Journal of Applied Physics. 2008. link Times cited: 33 Abstract: The deformation pathway of silicon induced by nanoindentatio… read moreAbstract: The deformation pathway of silicon induced by nanoindentation is investigated in detail at the atomic level using molecular dynamics. Due to the complex stresses associated with the directional loading along a specific crystallographic orientation, the initial Si I lattice is transformed into two different high-pressure phases, namely, Si II and BCT5-Si. The Si II phase, where atoms have the six nearest neighbors, is generated through the tetragonal deformation caused by the compressive loading along the [001] direction. In contrast, the BCT5-Si phase, where each silicon atom has the five nearest neighbors, is formed by flattening the initially stepped sixfold rings of the diamond lattice onto the (110) plane of the BCT lattice. These reconstructive transformations are accomplished only by adding additional bonds and do not involve any bond breaking. read less USED (high confidence) Y. Zhang, H. Shim, and H.-C. Huang, “Size dependence of twin formation energy in cubic SiC at the nanoscale,” Applied Physics Letters. 2008. link Times cited: 9 Abstract: This letter reports the size dependence of twin formation en… read moreAbstract: This letter reports the size dependence of twin formation energy in cubic SiC at the nanoscale, while the bulk value is nearly zero. Atomic edges surround the twin boundary of SiC nanowires, and they are responsible for the finite twin formation energy and its size dependence. Based on classical molecular statics calculations, the average formation energy of convex and concave edges is 73meV∕nm. Effectively, the twin formation energy is inversely proportional to the length of edges surrounding the twin boundary. Results of this letter make it possible to understand large separations of twin boundaries in SiC nanowires. read less USED (high confidence) J. Diao, D. Srivastava, and M. Menon, “Molecular dynamics simulations of carbon nanotube/silicon interfacial thermal conductance.,” The Journal of chemical physics. 2008. link Times cited: 85 Abstract: Using molecular dynamics simulations with Tersoff reactive m… read moreAbstract: Using molecular dynamics simulations with Tersoff reactive many-body potential for Si-Si, Si-C, and C-C interactions, we have calculated the thermal conductance at the interfaces between carbon nanotube (CNT) and silicon at different applied pressures. The interfaces are formed by axially compressing and indenting capped or uncapped CNTs against 2 x 1 reconstructed Si surfaces. The results show an increase in the interfacial thermal conductance with applied pressure for interfaces with both capped and uncapped CNTs. At low applied pressure, the thermal conductance at interface with uncapped CNTs is found to be much higher than that at interface with capped CNTs. Our results demonstrate that the contact area or the number of bonds formed between the CNT and Si substrate is key to the interfacial thermal conductance, which can be increased by either applying pressure or by opening the CNT caps that usually form in the synthesis process. The temperature and size dependences of interfacial thermal conductance are also simulated. These findings have important technological implications for the application of vertically aligned CNTs as thermal interface materials. read less USED (high confidence) G. Liu, X. Wang, J. Chen, and H. Lu, “Pressure‐ and orientation‐dependent linear optical absorption spectra of radially deformed single‐walled carbon nanotubes,” physica status solidi (b). 2008. link Times cited: 14 Abstract: Based upon the Slater–Koster tight‐binding model and the gra… read moreAbstract: Based upon the Slater–Koster tight‐binding model and the gradient approximation, we investigate the linear optical properties of radially deformed single‐walled carbon nanotubes (SWNTs). It is found that, for the armchair tubes, the radial pressure may make the absorption peaks exhibited in the perfect tube shift to lower energy and eventually vanish, which is consistent with the experimental results observed in the optical spectra of squashed SWNT films. In addition, a lot of new and pressure‐ and orientation‐dependent absorption peaks emerge in the optical spectra of the radially deformed tubes. Finally, for comparison, the dependence of optical properties of deformed tubes on chirality is discussed simply. (© 2008 WILEY‐VCH Verlag GmbH & Co. KGaA, Weinheim) read less USED (high confidence) J. Kioseoglou, P. Komninou, G. Dimitrakopulos, I. P. Antoniades, M. K. Hatalis, and T. Karakostas, “Crystallization of amorphous silicon thin films: comparison between experimental and computer simulation results,” Journal of Materials Science. 2008. link Times cited: 1 USED (high confidence) Y.-R. Chen, C. Weng, and S.-J. Sun, “Temperature sensing using individual single-walled carbon nanotubes,” Nanotechnology. 2008. link Times cited: 0 Abstract: Molecular dynamics simulations and quantum transport theory … read moreAbstract: Molecular dynamics simulations and quantum transport theory are employed to study the temperature-dependent electrical properties of individual (12,0) zigzag and (5,5) armchair carbon nanotubes deposited on silicon substrates. The results demonstrate that the magnitude of the leakage current depends on the length of the nanotube. Furthermore, the leakage current is generated periodically along the length of the nanotube. Finally, the results indicate that given an appropriate value of the applied bias voltage, the induced current varies linearly with the temperature over specific temperature ranges. As a result, the temperature can be inversely derived from the measured current signal. Overall, the results show that the (12,0) zigzag and (5,5) armchair carbon nanotubes are suitable for temperature sensing applications over temperature ranges of 200–420 K and 300–440 K, respectively. read less USED (high confidence) M. Bertolus, F. Ribeiro, and M. Defranceschi, “Mechanisms of amorphization-induced swelling in silicon
carbide: the molecular dynamics answer,” The European Physical Journal B. 2007. link Times cited: 3 USED (high confidence) J. Zang and F. Liu, “Theory of bending of Si nanocantilevers induced by molecular adsorption: a modified Stoney formula for the calibration of nanomechanochemical sensors,” Nanotechnology. 2007. link Times cited: 51 Abstract: We investigate the bending of nanometer thick Si cantilevers… read moreAbstract: We investigate the bending of nanometer thick Si cantilevers induced by chemisorption of H atoms and acetylene molecules, using atomistic simulations and continuum theories. We show that the bending curvature of Si nanocantilevers does not follow the classical Stoney formula, but agrees well with a modified Stoney formula that we have derived. Our studies reveal the dominant role of atomic structure and surface stress in governing the bending behavior of nanofilms, and demonstrate that the modified Stoney formula has to be used for the calibration of nanomechanochemical sensors in detecting trace amounts of molecules. read less USED (high confidence) H. Shen, “Thermal-stability and tensile properties of two single-walled Si–H nanotubes,” Molecular Simulation. 2007. link Times cited: 1 Abstract: The Molecular dynamics (MD) method was used to predict the t… read moreAbstract: The Molecular dynamics (MD) method was used to predict the thermal-stability and tensile properties of two single-walled Si nanotubes that are hydrogenated outside and both inside and outside respectively, i.e. the Sio–H and Siio–H nanotubes. Further, the axial-tensile properties of the two Si–H nanotubes were discussed by comparison with one (14,14) carbon nanotube. The obtained results show that: (1) the two Si–H nanotubes both have the Si skeletons with the structure similar to the {110} planes of single-crystal silicon, and they can stably exist only at the temperature lower than 200 and 125 K respectively and (2) the Sio–H and Siio–H nanotubes, respectively, have the tensile strength of 4.0 and 1.2 GPa as well as the fracture strain of 0.35 and 0.32; both their tensile strength and fracture strain are much lower than the corresponding ones of the (14,14) carbon-tube. read less USED (high confidence) A. Harjunmaa, J. Tarus, K. Nordlund, and J. Keinonen, “MD simulations of the cluster beam deposition of porous Ge,” The European Physical Journal D. 2007. link Times cited: 9 USED (high confidence) P. Vashishta, R. Kalia, A. Nakano, and J. Rino, “Interaction potential for silicon carbide: A molecular dynamics study of elastic constants and vibrational density of states for crystalline and amorphous silicon carbide,” Journal of Applied Physics. 2007. link Times cited: 279 Abstract: An effective interatomic interaction potential for SiC is pr… read moreAbstract: An effective interatomic interaction potential for SiC is proposed. The potential consists of two-body and three-body covalent interactions. The two-body potential includes steric repulsions due to atomic sizes, Coulomb interactions resulting from charge transfer between atoms, charge-induced dipole-interactions due to the electronic polarizability of ions, and induced dipole-dipole (van der Waals) interactions. The covalent characters of the Si–C–Si and C–Si–C bonds are described by the three-body potential. The proposed three-body interaction potential is a modification of the Stillinger-Weber form proposed to describe Si. Using the molecular dynamics method, the interaction potential is used to study structural, elastic, and dynamical properties of crystalline (3C), amorphous, and liquid states of SiC for several densities and temperatures. The structural energy for cubic (3C) structure has the lowest energy, followed by the wurtzite (2H) and rock-salt (RS) structures. The pressure for the structural t... read less USED (high confidence) K. Kang and W. Cai, “Brittle and ductile fracture of semiconductor nanowires – molecular dynamics simulations,” Philosophical Magazine. 2007. link Times cited: 135 Abstract: Fracture of silicon and germanium nanowires in tension at ro… read moreAbstract: Fracture of silicon and germanium nanowires in tension at room temperature is studied by molecular dynamics simulations using several interatomic potential models. While some potentials predict brittle fracture initiated by crack nucleation from the surface, most potentials predict ductile fracture initiated by dislocation nucleation and slip. A simple parameter based on the ratio between the ideal tensile strength and the ideal shear strength is found to correlate very well with the observed brittle versus ductile behaviours for all the potentials used in this study. This parameter is then computed by ab initio methods, which predict brittle fracture at room temperature. A brittle-to-ductile transition (BDT) is observed in MD simulations at higher temperature. The BDT mechanism in semiconductor nanowires is different from that in the bulk, due to the lack of a pre-existing macrocrack that is always assumed in bulk BDT models. read less USED (high confidence) J. Zang, M. Huang, and F. Liu, “Mechanism for nanotube formation from self-bending nanofilms driven by atomic-scale surface-stress imbalance.,” Physical review letters. 2007. link Times cited: 93 Abstract: We demonstrate, by theoretical analysis and molecular dynami… read moreAbstract: We demonstrate, by theoretical analysis and molecular dynamics simulation, a mechanism for fabricating nanotubes by self-bending of nanofilms under intrinsic surface-stress imbalance due to surface reconstruction. A freestanding Si nanofilm may spontaneously bend itself into a nanotube without external stress load, and a bilayer SiGe nanofilm may bend into a nanotube with Ge as the inner layer, opposite of the normal bending configuration defined by misfit strain. Such rolled-up nanotubes can accommodate a high level of strain, even beyond the magnitude of lattice mismatch, greatly modifying the tube electronic and optoelectronic properties. read less USED (high confidence) S. Jian, T. Fang, D. Chuu, and L. Ji, “Atomistic modeling of dislocation activity in nanoindented GaAs,” Applied Surface Science. 2006. link Times cited: 12 USED (high confidence) I. Remediakis, D. Jesson, and P. Kelires, “Probing the structure and energetics of dislocation cores in SiGe alloys through Monte Carlo simulations.,” Physical review letters. 2006. link Times cited: 7 Abstract: We present a methodology for the investigation of dislocatio… read moreAbstract: We present a methodology for the investigation of dislocation energetics in segregated alloys based on Monte Carlo simulations which equilibrate the topology and composition of the dislocation core and its surroundings. An environment-dependent partitioning of the system total energy into atomic contributions allows us to link the atomistic picture to continuum elasticity theory. The method is applied to extract core energies and radii of 60 degrees glide dislocations in segregated SiGe alloys which are inaccessible by other methods. read less USED (high confidence) S. Y. Kim, I.-H. Lee, S. Jun, Y. Lee, and S. Im, “Coalescence and T-junction formation of carbon nanotubes : Action-derived molecular dynamics simulations,” Physical Review B. 2006. link Times cited: 10 Abstract: The mechanisms of coalescence and T-junction formation of ca… read moreAbstract: The mechanisms of coalescence and T-junction formation of carbon nanotubes are analyzed using actionderived molecular dynamics. The control of kinetic energy in addition to the total energy leads to the determination of the minimum-energy atomistic pathway for each of these processes. Particularly, we find that the unit merging process of two carbon nanotubes consists of four sequential generalized Stone-Wales transformations occurring in four hexagon-heptagon pairs around the jointed part. In addition, we show that a single carbon atom may play the role of an autocatalyst, which significantly reduces the global activation energy barrier of the merging process. For T junction formation, two different models are chosen for simulation. One contains defects near the point of junction formation, while the other consists of two perfect nanotubes plus two additional carbon atoms. Our results indicate that the coalescence and junction formation of nanotubes may occur more easily than theoretically predicted in the presence of additional carbon atoms at moderate temperatures. read less USED (high confidence) S. Medyanik, E. Karpov, and W. K. Liu, “Domain reduction method for atomistic simulations,” J. Comput. Phys. 2006. link Times cited: 29 USED (high confidence) J. Kang, Q. Jiang, and H. J. Hwang, “A double-walled carbon nanotube oscillator encapsulating a copper nanowire,” Nanotechnology. 2006. link Times cited: 28 Abstract: A double-walled carbon nanotube (CNT) oscillator encapsulati… read moreAbstract: A double-walled carbon nanotube (CNT) oscillator encapsulating a copper nanowire has been investigated using molecular dynamics simulations. Our simulation results show that the excess energy due to the interactions between the copper nanowire and the outer CNT were around 1% of the excess of van der Waals energy between the inner and the outer CNTs. The classical oscillation theory and the theory given by Zheng et al (2002 Phys. Rev. Lett. 88 045503) provide a fairly good estimate of the mass-dependent frequency of a CNT oscillator encapsulating a metal nanowire. The nanotube oscillator encapsulating a metal nanowire is found to be more dependent on the encapsulated metal mass than the metal–carbon interaction. read less USED (high confidence) J. Hsieh, J.-M. Lu, M. Huang, and C. Hwang, “Theoretical variations in the Young’s modulus of single-walled carbon nanotubes with tube radius and temperature: a molecular dynamics study,” Nanotechnology. 2006. link Times cited: 75 Abstract: This study uses molecular dynamics simulations to investigat… read moreAbstract: This study uses molecular dynamics simulations to investigate the intrinsic thermal vibrations of a single-walled carbon nanotube (SWNT) modelled as a clamped cantilever. Using an elastic model defined in terms of the tube length, the tube radius and the tube temperature, the standard deviation of the vibrational amplitude of the tube’s free end is calculated and the Young’s modulus of the SWNT evaluated. The numerical results reveal that the value of the Young’s modulus is independent of the tube length, but decreases with increasing tube radius. At large tube radii, the Young’s modulus value approaches the in-plane modulus of graphene, which can be regarded as an SWNT of infinitely large radius. The results also indicate that the Young’s modulus is insensitive to changes in the tube temperature at temperatures of less than approximately 1100 K, but decreases significantly at higher temperatures. read less USED (high confidence) F. Mota, V. B. Nascimento, and C. D. de Castilho, “Ab initio electronic and structural properties of clean and hydrogen saturated β-SiC(100)(3 × 2) surfaces,” Journal of Physics: Condensed Matter. 2006. link Times cited: 8 Abstract: This paper deals with ab initio calculations relating to the… read moreAbstract: This paper deals with ab initio calculations relating to the atomic and electronic structure of the β-SiC(100)(3 × 2)–H surface. The results lead to the interpretation that electronic states associated with H atoms are responsible for a metallic behaviour, when saturation in the H deposition on the clean β-SiC(100)(3 × 2) is effected, a feature observed experimentally by Derycke et al. Although confirming the experimentally observed electronic behaviour, the present results differ as regards the H atom positions. Atomic structural properties were calculated and compared with previous ones available in the literature. read less USED (high confidence) K. D. Krantzman, D. B. Kingsbury, and B. Garrison, “Bombardment induced surface chemistry on Si under keV C60 impact,” Applied Surface Science. 2006. link Times cited: 23 USED (high confidence) M. Amat, I. Kevrekidis, and D. Maroudas, “Coarse molecular-dynamics determination of the onset of structural transitions: Melting of crystalline solids,” Physical Review B. 2006. link Times cited: 7 Abstract: Using a coarse molecular-dynamics (CMD) approach with an app… read moreAbstract: Using a coarse molecular-dynamics (CMD) approach with an appropriate choice of coarse variable (order parameter), we map the underlying effective free-energy landscape for the melting of a crystalline solid. Implementation of this approach provides a means for constructing effective free-energy landscapes of structural transitions in condensed matter. The predictions of the approach for the thermodynamic melting point of a model silicon system are in excellent agreement with those of ``traditional'' techniques for melting-point calculations, as well as with literature values. read less USED (high confidence) M. Tanaka, K. Higashida, H. Nakashima, H. Takagi, and M. Fujiwara, “Orientation dependence of fracture toughness measured by indentation methods and its relation to surface energy in single crystal silicon,” International Journal of Fracture. 2006. link Times cited: 61 USED (high confidence) S. Pizzini, S. Binetti, A. Donne, A. Marzegalli, and J. Rabier, “Optical properties of shuffle dislocations in silicon,” Applied Physics Letters. 2006. link Times cited: 12 Abstract: The radiative recombination processes in dislocated float zo… read moreAbstract: The radiative recombination processes in dislocated float zone silicon samples deformed under gigapascal stresses were studied by photoluminescence (PL) spectroscopy. The observed shuffle dislocations present a reconstructed core and their generation is accompanied by the introduction of point defects and point defect clusters, whose signature is evident in the PL spectra. A broad band around 1eV is the only PL feature which could be directly related to shuffle dislocations and it is explained conjecturing strain field induced gap changes, as confirmed by molecular dynamics simulations. read less USED (high confidence) D. E. Kim and S. I. Oh, “Atomistic simulation of structural phase transformations in monocrystalline silicon induced by nanoindentation,” Nanotechnology. 2006. link Times cited: 111 Abstract: Structural phase transformations of silicon during nanoinden… read moreAbstract: Structural phase transformations of silicon during nanoindentation were investigated in detail at the atomic level. The molecular dynamics simulations of nanoindentation on the (100) and (111) surface of single crystalline silicon were simulated, and this supported the theoretical prediction of the anisotropic behaviour of structural phase transformations. Simulations showed that microscopic aspects of phase transformation varied according to the crystallographic orientation of the contact surface and were directly linked to the slip system of silicon. In the transformed region along the centreline, the crystalline structure of Si-II and the amorphous structure were observed when silicon was loaded in the [100] and [111] directions, respectively. Simultaneously, metastable phases with fourfold coordination, such as Si-III and Si-XII, were formed by the inhomogeneous distortion in the slip direction of silicon and observed along the direction. Additionally, our results indicated that the deviatoric stress added to the hydrostatic pressure induced by loading was an indispensable factor for the structural phase transformation to Si-II during nanoindentation on the (100) surface. read less USED (high confidence) M. Ippolito, A. Mattoni, L. Colombo, and N. Pugno, “Role of lattice discreteness on brittle fracture: Atomistic simulations versus analytical models,” Physical Review B. 2006. link Times cited: 48 Abstract: By means of thorough atomistic simulations an energy-based t… read moreAbstract: By means of thorough atomistic simulations an energy-based theory, named quantized fracture mechanics, is commented and validated. This approach modifies continuum linear elastic fracture mechanics by introducing the hypothesis of discrete crack propagation, taking into account the discreteness of the crystal lattice. We investigate at an atomistic level the crack energy resistance for a matrix of silicon carbide with an isolated crack, and the effect on the stress at the crack tip due to a second phase particle. In both cases our results show that, while atomistic simulations provide the most basic level of understanding of mechanical behavior in nanostructured brittle materials, quantized fracture mechanics is able to effectively incorporate the main lattice-related feature, thus enlarging the realm of continuum modeling. read less USED (high confidence) M. Cai, X. P. Li, and M. Rahman, “Molecular dynamics simulation of the effect of tool edge radius on cutting forces and cutting region in nanoscale ductile cutting of silicon,” Int. J. Manuf. Technol. Manag. 2005. link Times cited: 6 Abstract: Unlike in conventional cutting processes, where the undeform… read moreAbstract: Unlike in conventional cutting processes, where the undeformed chip thickness is significant compared to the cutting tool edge radius, in nanoscale cutting processes, the undeformed chip thickness is very small, on the nanoscales. Therefore, the tool edge radius can not been ignored. It has been found that there is a brittle-ductile transition in cutting of brittle materials when the cutting tool edge radius is reduced to nanoscale and the undeformed chip thickness is smaller than the tool edge radius. In order to better understand the mechanism of the transition, a molecular dynamics (MD) method, which is different from continuous linear mechanics, is employed to model and simulate the nanoscale ductile mode cutting process of monocrystalline silicon wafer. The simulated variation of the cutting forces with the tool cutting edge radius is compared with the results of the cutting force from experimental cutting tests and they show a good agreement. In the simulated results, it can be seen that the thrust force is much larger than the cutting force in cutting. The simulated results also denote that the resultant force in the cutting process is not uniformly distributed along the cutting tool edge. In the simulation, the elastic springback of small thickness is observed on the machined workpiece surface. read less USED (high confidence) J. Kang and H. Hwang, “An ultrathin carbon nanoribbon study as a component of nanoelectromechanical devices,” Molecular Simulation. 2005. link Times cited: 4 Abstract: We investigated a carbon nanoribbon (CNR) using atomistic si… read moreAbstract: We investigated a carbon nanoribbon (CNR) using atomistic simulations based on Tersoff–Brenner potential function. The CNR was obtained from a compressed (5,5) carbon nanotube (CNT). The obtained CNR had a cross-sectional view as a binocular telescope structure composed of both sp2 and sp3 bonds. One carbon atom per ten carbon atoms had sp3 bond. For the optimized structures, the residual forces on the CNR were 3-order higher than that on the CNR and the lattice constant of the CNR was higher 0.0624 Å than that of the CNT along the tube axis. The Young's modulus of the CNR was the same as that of the CNT whereas the critical strain of the CNR was significantly lower than that of the CNT because the residual stresses on the CNR was very higher than those on the CNT. The tensile force curve vs. the strain of the CNT was slightly higher than that of the CNR. read less USED (high confidence) Y. Jeng, P. Tsai, and T. Fang, “Molecular-dynamics studies of bending mechanical properties of empty and C60-filled carbon nanotubes under nanoindentation.,” The Journal of chemical physics. 2005. link Times cited: 25 Abstract: This paper utilizes molecular-dynamics simulations to invest… read moreAbstract: This paper utilizes molecular-dynamics simulations to investigate the mechanical characteristics of a suspended (10, 10) single-walled carbon nanotube (SWCNT) during atomic force microscopy (AFM) nanoindentation at different temperatures. Spontaneous topological transition of the Stone-Wales (SW) defects is clearly observed in the indentation process. The present results indicate that under AFM-bending deformation, the mechanical properties of the SWCNT, e.g., the bending strength, are dependent on the wrapping angle. In addition, it is also found that the radial dependence of the reduced formation energy of the SW defects is reasonably insensitive only for the small tubes. However, for tube diameters greater than 2.4 nm [corresponding to the (18, 18) CNT], the SW defects tend to be more radius sensitive. The results indicate that the bending strength decreases significantly with increasing temperature. This study also investigates the variation in the mechanical properties of the nanotube with the density of C60 encapsulated within the nanotube at various temperatures. It is found that, at lower temperatures, the bending strength of the C60-filled nanotube increases with C60 density. However, the reverse tendency is observed at higher temperatures. Finally, the "sharpest tip" phenomena between the probe and the tube wall and the elastic recovery of the nanotube during the retraction process are also investigated. read less USED (high confidence) G. Lucas and L. Pizzagalli, “Comparison of threshold displacement energies in β-SiC determined by classical potentials and ab initio calculations,” Nuclear Instruments & Methods in Physics Research Section B-beam Interactions With Materials and Atoms. 2005. link Times cited: 49 USED (high confidence) A. Marzegalli, F. Montalenti, and L. Miglio, “Stability of shuffle and glide dislocation segments with increasing misfit in Ge∕Si1−xGex(001) epitaxial layers,” Applied Physics Letters. 2005. link Times cited: 15 Abstract: Using molecular dynamics simulations, based on Tersoff poten… read moreAbstract: Using molecular dynamics simulations, based on Tersoff potentials, we show that at typical experimental temperatures high compressive strain regimes suppress the formation of partial glide dislocations, while enhancing the gliding of the shuffle segments. Despite being qualitative in nature, these results suggest that strain relaxation in thin virtual substrates at high misfit may occur with a different modality than in thick graded layers, as indicated by preliminary experimental results by low-energy plasma enhanced chemical vapor deposition. read less USED (high confidence) J. Kang and H. Hwang, “The electroemission of endo-fullerenes from a nanotube,” Nanotechnology. 2004. link Times cited: 12 Abstract: We investigated the electroemission of endo-fullerenes from … read moreAbstract: We investigated the electroemission of endo-fullerenes from a carbon nanotube using classical molecular dynamics simulations based on the Tersoff–Brenner potential and Lennard-Jones potentials. The height of the potential energy barrier was closely related to the threshold electrostatic field intensity. The length of the empty nanospace inside the carbon peapod was important for the endo-fullerene to obtain the kinetic energy above the potential energy barrier. As the number of the endo-fullerenes increased, since the correlated collisions between the endo-fullerenes increased, the kinetic energy transfers between the endo-fullerenes were very important for the endo-fullerene electroemission from the carbon peapod. As the empty nanospace in the peapod increased, the electroemission of the endo-fullerenes from the peapod could be easily achieved in the low electrostatic field intensity. Both the initial configurations of the endo-fullerenes in the carbon peapod and the external electrostatic field intensity very closely affected the endo-fullerene electroemission from the carbon peapod. read less USED (high confidence) Y. Jeng, P. Tsai, and T. Fang, “Molecular dynamics investigation of the mechanical properties of gallium nitride nanotubes under tension and fatigue,” Nanotechnology. 2004. link Times cited: 47 Abstract: This study adopts a classical molecular dynamics (MD) simula… read moreAbstract: This study adopts a classical molecular dynamics (MD) simulation with the realistic Tersoff many-body potential model to investigate the mechanical properties of gallium nitride (GaN) nanotubes. The investigation focuses primarily on the mechanical properties of (n,0) and (n,n) GaN nanotubes since these particular nanotubes represent two extreme cases. The present results indicate that under small strain conditions, mechanical properties such as Young’s modulus are insensitive to the wrapping angle. Conversely, the wrapping angle has a significant influence upon these mechanical properties under large strain conditions. It is demonstrated that (9,0) GaN nanotubes are far less resistant to bond rotation. Under large tensile strain conditions, due to the unfavourable bond orientations induced by Stone–Wales (SW) transformation, the bonds in (n,0) GaN tubes quickly degenerate. Moreover, the present results suggest that the tensile strength of a nanotube is strongly sensitive to the temperature and strain rate. Regarding the fatigue test, this study uses a standard theoretical model to derive curves of amplitude stress versus number of cycles for the current nanotubes. The results demonstrate that the fatigue limit of GaN nanotubes increases with increasing temperature. read less USED (high confidence) T. Y. Kim, S. Han, and H.-M. Lee, “Nanomechanical Behavior of β-SiC Nanowire in Tension: Molecular Dynamics Simulations,” Materials Transactions. 2004. link Times cited: 35 Abstract: The molecular dynamics (MD) simulation employing a Tersoff p… read moreAbstract: The molecular dynamics (MD) simulation employing a Tersoff potential was performed to examine the nanomechanical behavior of the � SiC nanowire in tension. The elongation was much larger than that of the bulk � -SiC. We observed non-homogeneous deformation, and the fracture behavior was found to depend on size, orientation and temperature of the specimen. The Young’s modulus calculated in this study generally decreased with temperatures and increased with the radius, namely, the diameter of the � -SiC nanowire as long as the length scale remained the same. The initial orientation was found to have a more serious effect on the Young’s modulus than size and temperature. The [111] Young’s modulus is much higher than that of the [001] orientation. The fracture of the � -SiC nanowire in the [001] orientation showed two different modes, which is brittle at 100 K and ductile at 300 and 500 K. The ductile fracture was accompanied by formation of an atomic chain. In the [111] orientation, it was always fractured in the ductile mode and thus an atomic chain was formed before rupture. read less USED (high confidence) C. Sanz-Navarro, S. Kenny, and R. Smith, “Atomistic simulations of structural transformations of silicon surfaces under nanoindentation,” Nanotechnology. 2004. link Times cited: 66 Abstract: Molecular dynamics (MD) simulations have been carried out in… read moreAbstract: Molecular dynamics (MD) simulations have been carried out in order to investigate morphological changes in three different crystallographically oriented silicon surfaces during nanoindentation. Transformations to fivefold and sixfold coordinated structures are observed during the contact loading. However, the atoms are arranged in a complex mix of different local structures rather than forming a new crystalline phase. This region forms a thin layer of around 15 A under the contact area. The thermal vibration of the atoms is found to have an important role in the recovery of the damage region during tip retraction. read less USED (high confidence) J. Pollmann and P. Krüger, “Reconstruction models of cubic SiC surfaces,” Journal of Physics: Condensed Matter. 2004. link Times cited: 38 Abstract: The current understanding of the relaxation and reconstructi… read moreAbstract: The current understanding of the relaxation and reconstruction of low-index cubic SiC surfaces, as it derives from first-principles calculations, is briefly reviewed in comparison with surface-sensitive experimental data. The calculated structural properties are obtained from ab initio total energy and grand canonical potential minimization in the framework of the local density and generalized gradient approximations of density functional theory. Characteristic surface structural properties are related to the surface electronic structure and to the ionicity of the underlying bulk crystal. For a number of cubic surfaces, there is good agreement between first-principles results and the data. In other cases, most noticeably for Si-terminated SiC(001) surfaces, there is still considerable controversy with respect to the atomic and electronic structure in both experiment and theory. read less USED (high confidence) C. R. Miranda and A. Antonelli, “Transitions between disordered phases in supercooled liquid silicon.,” The Journal of chemical physics. 2004. link Times cited: 32 Abstract: We have investigated the transitions between disordered phas… read moreAbstract: We have investigated the transitions between disordered phases in supercooled liquid silicon using computer simulations. The thermodynamic properties were directly obtained from the free energy, which was computed using the recently proposed reversible scaling method. The calculated free energies of the crystalline and liquid phases of silicon at zero pressure, obtained using the environment dependent interatomic potential, are in excellent agreement with the available experimental data. The results show that, at zero pressure, a weak first-order liquid-liquid transition occurs at 1135 K and a continuous liquid-amorphous transition takes place at 843 K. These results are consistent with the existence of a second critical point for the liquid-liquid transition at a negative pressure. read less USED (high confidence) S. Yoo, X. Zeng, and J. R. Morris, “The melting lines of model silicon calculated from coexisting solid-liquid phases.,” The Journal of chemical physics. 2004. link Times cited: 76 Abstract: The molecular-dynamics simulation approach [Morris and Song,… read moreAbstract: The molecular-dynamics simulation approach [Morris and Song, J. Chem. Phys. 116, 9352 (2002)] is employed to calculate the melting lines for two model systems of silicon: the Stillinger–Weber (SW) model and the Tersoff-89 model. To address the anisotropic stress problem indicated in the previous paper, a slightly improved simulation procedure is used to prepare the coexisting solid and liquid phases at the thermodynamic equilibrium. For the SW silicon, the calculated melting temperature Tm at zero pressure agrees with that based on the free-energy calculation [Broughton and Li, Phys. Rev. B 35, 9120 (1987)]. The dependence of Tm at zero pressure on the selected solid surface orientation is also examined. The relative difference between Tm calculated based on the sharp Si (111)/liquid interface and the faceted Si (100)/liquid interface is less than 1%. Both models predict that the melting line exhibits a negative slope, which is consistent with the fact that the molar volume of the solid is larger than tha... read less USED (high confidence) G. V. Kornich, G. Betz, V. Zaporojtchenko, and A. Bazhin, “Simulation of ion sputtering of copper clusters from single crystal graphite surface,” Technical Physics Letters. 2003. link Times cited: 4 USED (high confidence) L. Nurminen, F. Tavazza, D. Landau, A. Kuronen, and K. Kaski, “Reconstruction and intermixing in thin Ge layers on Si(001),” Physical Review B. 2003. link Times cited: 16 Abstract: In this work the Monte Carlo method with an empirical potent… read moreAbstract: In this work the Monte Carlo method with an empirical potential model for atomic interactions is applied to study reconstruction and intermixing at a Ge-covered Si(001) surface. We investigate the structure and energetics of the $2\ifmmode\times\else\texttimes\fi{}n$ reconstruction which serves as a strain-relief mechanism. The optimal value of n is found to be strongly dependent on the thickness of the Ge overlayer. Si-Ge intermixing is studied using a direct simulation method which includes entropic effects. Ge occupation probabilities in subsurface layers are evaluated as a function of Ge coverage at different temperatures. The results show that strain-relief driven intermixing has a pronounced effect on the surface reconstruction once the Ge coverage reaches a full layer. We also evaluate the effect of temperature on the distribution of Ge in subsurface layers and discuss effects due to kinetic limitations. In agreement with experiments, the study provides a description of the interplay between reconstruction and intermixing at Ge-covered Si(001). read less USED (high confidence) H. Nakazawa and M. Suemitsu, “Formation of quasi-single-domain 3C-SiC on nominally on-axis Si(001) substrate using organosilane buffer layer,” Journal of Applied Physics. 2003. link Times cited: 28 Abstract: Quasi-single-domain 3C-SiC films have been successfully grow… read moreAbstract: Quasi-single-domain 3C-SiC films have been successfully grown on nominally on-axis Si(001) substrate. The starting surface is either of 2×1 quasi-single-domain or of 2×1+1×2 double-domain. The point here is to use dc-resistive heating of the substrate and to form a low-temperature (650 °C) interfacial buffer layer using monomethylsilane (H3 C-SiH3). The dc resistive heating serves to form a single-domain Si(001)-2×1 or 1×2 starting surface or to develop a single-domain 3C-SiC(001)-2×3 or 3×2 surface on a 2×1+1×2 double-domain Si(001) substrate. When a single-domain Si(001) starting surface is utilized, it is not the dc polarity during growth but the surface reconstruction of the starting surface that determines the dominant domain in the 3C-SiC film. The thickness of the single-domain 3C-SiC film is as thin as ∼45–200 nm, which is about three orders of magnitude smaller than that required in a previous study (>5 μm). read less USED (high confidence) M. Tanaka, K. Higashida, H. Nakashima, H. Takagi, and M. Fujiwara, “Fracture Toughness Evaluated by Indentation Methods and Its Relation to Surface Energy in Silicon Single Crystals,” Materials Transactions. 2003. link Times cited: 25 Abstract: Fracture toughness of silicon crystals has been investigated… read moreAbstract: Fracture toughness of silicon crystals has been investigated by indentation methods, and their surface energy has been calculated using molecular dynamics (MD). When a conical indenter was forced into a (001) silicon wafer at room temperature, {110} cracks were mainly introduced from the indent, indicating that fracture occurs most easily along the {110} plane among the crystallographic planes of the h001i zone. To confirm this orientation dependence, surface energies for those planes were computed using molecular dynamics. The surface energy read less USED (high confidence) V. Deibuk, “The effect of strain on the thermodynamic properties of Ge-Si, Ge-Sn, Si-Sn, Si-C thin solid films,” Semiconductor physics, quantum electronics and optoelectronics. 2002. link Times cited: 4 USED (high confidence) G. Cicero, L. Pizzagalli, and A. Catellani, “A molecular dynamics study of the β-SiC/Si(001) interface,” Journal of Physics: Condensed Matter. 2002. link Times cited: 3 Abstract: Despite the large lattice mismatch, SiC is often grown on to… read moreAbstract: Despite the large lattice mismatch, SiC is often grown on top of Si substrates. An effective mechanism for accommodating this mismatch is the formation of an array of pure edge dislocations at the interface. We have performed a comparative study of possible core structures of the misfit dislocation via molecular dynamics simulations. We present and discuss the results for the energetics and the structural properties of the most stable configuration. read less USED (high confidence) J. Li and S. Yip, “Atomistic Measures of Materials Strength,” Cmes-computer Modeling in Engineering & Sciences. 2002. link Times cited: 17 Abstract: We examine the role of atomistic simula- tions in multiscale… read moreAbstract: We examine the role of atomistic simula- tions in multiscale modeling of mechanical behavior of stressed solids. Theoretical strength is defined through modes of structural instability which, in the long wave- length limit, are specified by criteria involving elastic stiffness coefficients and the applied stress; more gen- erally, strength can be characterized by the onset of soft vibrational modes in the deformed lattice. Alternatively, MD simulation of stress-strain response provides a direct measure of the effects of small-scale microstructure on strength, as illustrated by results on SiC in single crystal, amorphous, and nanocrystalline phases. A Hall-Petch type scaling is introduced to estimate strength of labora- tory specimens containing microstructural flaws of cer- tain critical size. A preliminary simulation of Cu thin film nano-indentation is described as a means of probing the ideal shear strength. The challenge of formulating a local measure of the driving force for defect motion is briefly discussed. read less USED (high confidence) P. Raiteri, L. Miglio, F. Valentinotti, and M. Celino, “Strain maps at the atomic scale below Ge pyramids and domes on a Si substrate,” Applied Physics Letters. 2002. link Times cited: 29 Abstract: In this letter, the strain field below uncapped Ge islands o… read moreAbstract: In this letter, the strain field below uncapped Ge islands of a different shape on a Si(001) substrate is estimated by molecular dynamics simulations at a realistic scale. Comparison to the Fourier transform maps of transmission electron micrographs, recently reported in literature, shows a very good agreement. We point out that the complex deformation in silicon, just below the edges of the Ge islands, is far from being uniaxial. The stress distribution generated by such a strain determines the range of interdot repulsion. read less USED (high confidence) A. Romano, J. Li, and S. Yip, “Atomistic simulation of matter under stress: crossover from hard to soft materials,” Physica A-statistical Mechanics and Its Applications. 2002. link Times cited: 8 USED (high confidence) S. Yip, J. Li, M. Tang, and J. Wang, “Mechanistic aspects and atomic-level consequences of elastic instabilities in homogeneous crystals,” Materials Science and Engineering A-structural Materials Properties Microstructure and Processing. 2001. link Times cited: 120 USED (high confidence) M. Ishimaru, “Molecular-dynamics study on atomistic structures of amorphous silicon,” Journal of Physics: Condensed Matter. 2001. link Times cited: 20 Abstract: Structural characteristics of amorphous silicon (a-Si) have … read moreAbstract: Structural characteristics of amorphous silicon (a-Si) have been examined by molecular-dynamics calculations using the Tersoff interatomic potential. It was confirmed that the computer-generated atomic configurations reproduce well the structural and dynamical properties of a-Si obtained experimentally. The a-Si networks contained two types of structural defect: threefold coordinated Si atoms (dangling bonds) and fivefold coordinated ones (floating bonds). The average bond length increased with the coordination number. Bond angles were distributed around 120° for the threefold coordinations, suggesting the existence of the atomic clusters constructed by sp2 bonding. On the other hand, they had peaks at ~60° and 90° for the fivefold coordinated atoms. Partial radial distribution functions revealed that the floating bonds have a tendency to cluster in the a-Si network. read less USED (high confidence) K. Nordlund, P. Partyka, R. Averback, I. Robinson, and P. Ehrhart, “Atomistic simulation of diffuse x-ray scattering from defects in solids,” Journal of Applied Physics. 2000. link Times cited: 21 Abstract: Diffuse x-ray scattering is a powerful means to study the st… read moreAbstract: Diffuse x-ray scattering is a powerful means to study the structure of defects in crystalline solids. The traditional analysis of diffuse x-ray scattering experiments relies on analytical and numerical methods which are not well suited for studying complicated defect configurations. We present here an atomistic simulation method by which the diffuse x-ray scattering can be calculated for an arbitrary finite-sized defect in any material where reliable interatomic force models exist. We present results of the method for point defects, defect clusters and dislocations in semiconductors and metals, and show that surface effects on diffuse scattering, which might be important for the investigation of shallow implantation damage, will be negligible in most practical cases. We also compare the results with x-ray experiments on defects in semiconductors to demonstrate how the method can be used to understand complex damage configurations. read less USED (high confidence) T. Aoki, “Molecular Dynamics Simulation of Cluster Ion Impact on Solid Surface,” MRS Proceedings. 2000. link Times cited: 7 Abstract: In this thesis, the impact process of cluster ions on solid … read moreAbstract: In this thesis, the impact process of cluster ions on solid surfaces was studied using molecular dynamics (MD) simulation. Cluster is an aggregated material which consists of a few to thousand atoms. The impact process of cluster ion on solid surface is of great interest because the e ect of impact by cluster ion cannot be explained by the summation of individual monomer ions, and it is termed as `nonlinear e ect.' In order to understand the nonlinear e ect by cluster, the dynamics of collisional process between cluster and solid surface should be examined. MD simulation is one method of computer simulation to solve numerically the Newton's equation of motion for each atom in the system using di erence equation technique, so MD can make it possible to trace the time evolution of coordinates and velocity for every atom with high resolution. The basic theory of molecular dynamics and the acceleration method are described in chapter 2. For this study, the original MD program was developed, which can accelerate the calculation speed of collisional process of high-energy atoms with a solid surface by applying di erent timestep to each atom depending on its velocity. Due to this acceleration technique and recent progress in computers, it can be possible to simulate the system with a large number of atoms, or more than hundred simulations in order to obtain statistics. In the following chapters, MD simulation is used to examine the impacts of various types of clusters on a number of well de ned substrates. Chapter 3 describes the typical impact process of cluster on solid surface examined using large argon cluster and silicon substrate. The di erences between cluster and monomer impact are shown in penetration range, damage formation and sputtering. The energy dependence of penetration depth of cluster was examined and it was fond that the penetration depth is pro- read less USED (high confidence) V. Ivashchenko, V. Shevchenko, L. A. Ivashchenko, and G. V. Rusakov, “Deep gap states of a single vacancy in cubic SiC,” Journal of Physics: Condensed Matter. 1999. link Times cited: 4 Abstract: The character of relaxation of atoms around a vacancy in cub… read moreAbstract: The character of relaxation of atoms around a vacancy in cubic silicon carbide is determined with the help of the empirical potential of Tersoff. The recursion method of Haydock and Nex is applied to calculate the density of states derived from atoms situated around the defect. The outward relaxation of the lattice surrounding a empty site is established. The lattice relaxation results in the shift of gap states toward the conduction band. Vacancy levels of carbon at 0.5 eV and silicon at 0.45 and 1.98 eV are revealed in the band gap. The obtained results are compared with the experimental ones and with the data of other calculations. The work shows the importance of taking into account the lattice relaxation in examining vacancy states in semiconducting compounds. read less USED (high confidence) A.-Q. Chen and L. Corrales, “Semiempirical methodology for simulating covalently bonded materials: Application to silicon,” Journal of Chemical Physics. 1996. link Times cited: 4 Abstract: A recently introduced semiempirical methodology is used to m… read moreAbstract: A recently introduced semiempirical methodology is used to model and simulate silicon via molecular dynamics. This approach is capable of grasping essential qualitative and quantitative features of the coupling between the electronic coordinates and the geometric structure. Properties of the bulk diamond crystal, the melt and amorphous solid states are obtained using optimization techniques and molecular dynamics simulations. The pair distribution function of the amorphous state is in excellent agreement with experimental and other molecular dynamics simulation results. read less USED (high confidence) D. Srivastava and B. Garrison, “The dynamics of surface rearrangements in Si adatom diffusion on the Si100(2 × 1) surface,” Journal of Chemical Physics. 1991. link Times cited: 33 Abstract: The Si adatom adsorption and diffusion on the fully relaxed … read moreAbstract: The Si adatom adsorption and diffusion on the fully relaxed Si{100}(2×1) surface is studied by a combination of molecular dynamics simulations with Tersoff’s potential for the Si interactions, a simplified transition state theory of Voter and lattice gas simulations. Six local minima for adsorption are found on the surface and the activation energies between each are determined. The Arrhenius behavior for the macroscopic diffusion is found to be D=5.67×10−3 exp(−0.75 eV/kT) cm2/s. In addition, it is found that the adatom diffusion is strongly anisotropic in nature and the direction of easy diffusion is perpendicular to the dimers (i.e., parallel to the dimer rows) of the original surface. The minimum energy path for the diffusion is found to be activated by the local unreconstruction (dimer opening) of the otherwise fully reconstructed surface. read less USED (high confidence) Z. Lan, Y. Sun, L.-quan Wang, and L. Ming, “Molecular Dynamics Simulation of Diamond Cutting Iron with Water Lubrication,” Journal of Physics: Conference Series. 2021. link Times cited: 0 Abstract: The water-based cutting fluid plays an important role in coo… read moreAbstract: The water-based cutting fluid plays an important role in cooling and lubricating during cutting process. In order to analyze the role of water in the cutting process from the microscopic view, this paper used molecular dynamics simulation to establish the cutting model with water lubrication by covering a water layer on the surface of iron workpiece. By comparing the cutting heat and friction coefficient under dry cutting and wet cutting, it is found that: water molecules will enter the gap between the tool and the workpiec, preventing the direct contact between the carbon atoms and the iron atoms, thereby reducing the friction coefficient. At the same time, wet cutting can reduce the surface temperature of the workpiece and play a role in cooling and lubricating. read less USED (high confidence) T. Otieno and K. Abou-El-Hossein, “Molecular dynamics analysis of nanomachining of rapidly solidified aluminium,” The International Journal of Advanced Manufacturing Technology. 2018. link Times cited: 7 USED (high confidence) M.-Q. Le, “Cohesive energy in graphene/MoS2 heterostructures,” Meccanica. 2017. link Times cited: 12 USED (high confidence) F. Mu et al., “Room Temperature SiC-SiO2Wafer Bonding Enhanced by Using an Intermediate Si Nano Layer,” ECS Journal of Solid State Science and Technology. 2017. link Times cited: 9 USED (high confidence) L. Xie, P. Brault, A. Thomann, X. Yang, Y. Zhang, and G. Shang, “Molecular dynamics simulation of Al–Co–Cr–Cu–Fe–Ni high entropy alloy thin film growth,” Intermetallics. 2016. link Times cited: 64 USED (high confidence) B. Wang 王, Bin 斌 Gu 古, Rongying 荣莹 Pan 潘, Sijia 思佳 Zhang 张, and Jianhua 建华 Shen 沈, “Molecular dynamics study on splitting of hydrogen-implanted silicon in Smart-Cut® technology,” Journal of Semiconductors. 2015. link Times cited: 0 Abstract: Defect evolution in a single crystal silicon which is implan… read moreAbstract: Defect evolution in a single crystal silicon which is implanted with hydrogen atoms and then annealed is investigated in the present paper by means of molecular dynamics simulation. By introducing defect density based on statistical average, this work aims to quantitatively examine defect nucleation and growth at nanoscale during annealing in Smart-Cut® technology. Research focus is put on the effects of the implantation energy, hydrogen implantation dose and annealing temperature on defect density in the statistical region. It is found that most defects nucleate and grow at the annealing stage, and that defect density increases with the increase of the annealing temperature and the decrease of the hydrogen implantation dose. In addition, the enhancement and the impediment effects of stress field on defect density in the annealing process are discussed. read less USED (high confidence) D. Schopf, “Effective potentials for numerical investigations of complex intermetallic phases.” 2013. link Times cited: 0 Abstract: The class of Complex Metallic Alloys (CMAs) is interesting f… read moreAbstract: The class of Complex Metallic Alloys (CMAs) is interesting for its wide range of physical properties. There are materials that exhibit high hardness at low density or good corrosion resistance, which is important for technological applications. Other compounds are superconductors, have strong anisotropic transport coefficients or exhibit a novel magnetic memory effect. The theoretical investigation of CMAs is often very challenging because of their inherent complexity and large unit cells with up to several thousand atoms. Molecular dynamics simulations with classical interaction potentials are well suited for this task – they can handle hundreds of thousands of atoms in reasonable time. Such simulations can provide insight into static and dynamic processes at finite temperatures on an atomistic level.
The accuracy of these simulations depends strongly on the quality of the employed interaction potentials. To generate physically relevant potentials the force-matching method can be applied. A computer code called potfit has been developed at the Institute for Theoretical and Applied Physics (ITAP) especially for this task. It uses a large database of quantum-mechanically calculated reference data, forces on individual atoms and cohesive energies, to generate effective potentials. The parameters of the potential are optimized in such a way that the reference data are reproduced as accurately as possible.
The potfit program has been greatly enhanced as part of this thesis. The optimization of analytic potentials, new interaction models as well as a new optimization algorithm were implemented. Potentials for two different complex metallic alloy systems have been generated and used to study their properties with molecular dynamics simulations.
The first system is an approximant to the decagonal Al-Pd-Mn quasicrystal. A potential which can reproduce the cohesive energy with high accuracy was generated. With the help of this potential a refinement of the experimentally poorly determined structure model could be performed.
The second class of potentials was fitted for intermetallic clathrate systems. They have interesting thermoelectric properties which originate from their special structure. Silicon- and germanium-based clathrate potentials were derived and the influence of the complex structure on the thermal conductivity has been studied.
Komplexe Intermetallische Verbindungen (CMAs) sind aufgrund ihrer vielfaltigen physikalischen Eigenschaften sehr interessant fur technologische Anwendungen. Dabei ist z.B. hohe Harte bei geringer Dichte und Korrosionsbestandigkeit wichtig. Neben Supraleitern gibt es Materialien mit anisotropen Transporteigenschaften oder einem neuartigen magnetischen Memory Effekt. Theoretische Untersuchungen von CMAs stellen durch ihre inharente Komplexitat und die riesigen Einheitszellen mit mehreren tausend Atomen oft eine grose Herausforderung dar. Molekulardynamiksimulationen mit effektiven Potenzialen konnen dazu eingesetzt werden; sie ermoglichen die Berechnung von hunderttausenden von Atome in annehmbarer Zeit. Damit kann ein Einblick in sowohl statische als auch dynamische Prozesse auf atomarer Ebene gewonnen werden.
Die Ergebenisse solcher Simulationen hangen jedoch sehr stark von der Qualitat der eingesetzten Wechselwirkung ab. Um physikalisch gerechtfertigte Potenziale zu erzeugen, kann die Force-Matching-Methode angewandt werden. Dazu wurde am Institut fur Theoretische und Angewandte Physik (ITAP) ein Programm mit dem Namen potfit entwickelt. Es verwendet eine grose Datenbank von quantenmechanisch berechneten Referenzgrosen wie z.B. Krafte auf die einzelnen Atome und die Kohasionsenergie, um effektive Potenziale zu generieren. Die freien Parameter des Potenzials werden optimiert, um die Referenzdaten so gut wie moglich zu reproduzieren.
Fur diese Arbeit wurde potfit deutlich erweitert. Es konnen nun analytisch definierte Potenziale optimiert werden, neue Wechselwirkungen wurden implementiert und ein neuer Optimierungsalgorithmus wurde hinzugefugt. Damit wurden effektive Potenziale fur zwei verschiedene CMA Systeme gefittet und deren Eigenschaften mit Molekulardynamik untersucht.
Fur die Approximanten eines decagonalen Al-Pd-Mn Quasikristalls, den Xi-Phasen, wurde ein Potenzial fur die Strukturbestimmung erzeugt. Es kann die Kohasionsenergien verschiedener Strukturen mit groser Genauigkeit wiedergeben. Ein aus experimentellen Daten ungenau bestimmtes Strukturmodell konnte damit erheblich verbessert werden.
Auserdem wurden Potenziale fur Intermetallische Klathrate erzeugt. Diese Systeme besitzen interessante thermoelektrische Eigenschaften aufgrund ihrer speziellen Kafigstruktur. Effektive Wechselwirkungen fur silizium- und germaniumbasierte Klathrate wurden erzeugt. Damit wurde der Einfluss der komplexen Struktur auf die thermische Leitfahigkeit des Gitters untersucht. read less USED (high confidence) C. Yu, H. Yu, G. Liu, W. Chen, B. He, and Q. J. Wang, “Understanding Topographic Dependence of Friction with Micro- and Nano-Grooved Surfaces,” Tribology Letters. 2013. link Times cited: 44 USED (high confidence) X. Hu, C. Tourek, Z. Ye, S. Sundararajan, and A. Martini, “Structural and Chemical Evolution of the Near-Apex Region of an Atomic Force Microscope Tip Subject to Sliding,” Tribology Letters. 2013. link Times cited: 12 USED (high confidence) Y. Wen et al., “Reducing the thermal conductivity of silicon by nanostructure patterning,” Applied Physics A. 2013. link Times cited: 5 USED (high confidence) C. Y. Tang, L. Zhang, and K. Mylvaganam, “Rate dependent deformation of a silicon nanowire under uniaxial compression: Yielding, buckling and constitutive description,” Computational Materials Science. 2012. link Times cited: 16 USED (high confidence) H. S. Park, “Surface stress effects on the critical buckling strains of silicon nanowires,” Computational Materials Science. 2012. link Times cited: 62 USED (high confidence) R. Yu, M. Lentzen, and J. Zhu, “Effective object planes for aberration-corrected transmission electron microscopy.,” Ultramicroscopy. 2012. link Times cited: 10 USED (high confidence) K. D. Krantzman and B. Garrison, “Effect of SiC bond formation in 20 keV C60 bombardment of Si,” Surface and Interface Analysis. 2011. link Times cited: 8 Abstract: We have performed molecular dynamics (MD) simulations to inv… read moreAbstract: We have performed molecular dynamics (MD) simulations to investigate the effect of SiC bond formation on fluence‐dependent results in 20 keV C60 bombardment of Si. Sputter depth profiling experiments of C60 on Si have produced atypical results, which are thought to be caused by the strong covalent bonds that are formed between the C atoms in the projectile and Si atoms in the substrate. A recently developed scheme developed by Russo, et al. 8 has been adapted to perform MD simulations of 150 successive impacts of 20 keV C60 on Si, which corresponds to a total fluence of 2.64 × 1013 impacts/cm2. In order to isolate the effects of SiC bond formation, the same set of trajectories is calculated with and without the attractive SiC potential energy terms. When SiC bonds are able to form, nearly all the C atoms from the projectile are incorporated into the substrate. When the possibility of SiC bond formation is removed, most of the C atoms are backscattered into the vacuum. The cumulative result is that the substrate with SiC bonds contains a factor of twenty times more C atoms, which are located below the surface. Copyright © 2010 John Wiley & Sons, Ltd. read less USED (high confidence) Z. Xue-Chuan, L. Xiaoming, Z. Zhuo, L. Zhan-li, and G. Yuan, “Inhomogenous Dislocation Nucleation Based on Atom Potential in Hexagonal Noncentrosymmetric Crystal Sheet,” Chinese Physics Letters. 2010. link Times cited: 0 Abstract: By introducing internal degree, the deformation of hexagonal… read moreAbstract: By introducing internal degree, the deformation of hexagonal noncentrosymmetric crystal sheet can be described by the revised Cauchy–Born rule based on atomic potential. The instability criterion is deduced to investigate the inhomogeneous dislocation nucleation behavior of the crystal sheet under simple loading. The anisotropic characters of dislocation nucleation under uniaxial tension are studied by using the continuum method associated with the instability criterion. The results show a strong relationship between yield stress and crystal sheet chirality. The results also indicate that the instability criterion has sufficient ability to capture the dislocation nucleation site and expansion. To observe the internal dislocation phenomenon, the prediction of the dislocation nucleation site and expansion domain is illustrated by MD simulations. The developed method is another way to explain the dislocation nucleation phenomenon. read less USED (high confidence) L. Marqués, L. Pelaz, I. Santos, P. López, and M. Aboy, “Molecular Dynamics Modeling of Octadecaborane Implantation into Si.” 2007. link Times cited: 0 USED (high confidence) O. Mykhailenko, D. Matsui, Y. Prylutskyy, F. Normand, P. Eklund, and P. Scharff, “Monte Carlo simulation of intercalated carbon nanotubes,” Journal of Molecular Modeling. 2007. link Times cited: 17 USED (high confidence) Y. Liang, D. Li, Q. Bai, S. Wang, and M. Chen, “Molecular Dynamics Simulation of Elliptical Vibration Cutting,” 2006 1st IEEE International Conference on Nano/Micro Engineered and Molecular Systems. 2006. link Times cited: 6 Abstract: For better understanding of the essential removal mechanisms… read moreAbstract: For better understanding of the essential removal mechanisms of brittle material and stress distribution at high speed and ultrasonic elliptical vibration assisted cutting conditions at the atomic level, the single crystal silicon, expected as a next generation semiconductor material for wide band cap, high-voltage and low-loss power devices, MEMS components and so on, is analyzed by molecular dynamics computer simulation for its nanometer behavior through cutting force and subsurface stress distribution in the condition of similar ultrasonic elliptical vibration cutting. In this simulation, the cutting tool is assumed to be one of rigid single crystal diamond. The atomic behavior in a plane corresponding to Silicon (100) plane is simulated for dealing with a plane strain problem where the three-dimensional effect of inter-atomic force is considered. The results show that the cutting forces varies following a similar sinusoid different from the conventional cutting and the atomic layers below the machined surface are deformed and have residual stress read less USED (high confidence) T. Hawa and M. Zachariah, “Coalescence kinetics of unequal sized nanoparticles,” Journal of Aerosol Science. 2006. link Times cited: 128 USED (high confidence) K. Mylvaganam and L. Zhang, “Important issues in a molecular dynamics simulation for characterising the mechanical properties of carbon nanotubes,” Carbon. 2004. link Times cited: 201 USED (high confidence) J. Chang, C. Hwang, S. Ju, and S. Huang, “A molecular dynamics simulation investigation into the structure of fullerene C60 grown on a diamond substrate,” Carbon. 2004. link Times cited: 11 USED (high confidence) I. Zarudi, W. C. D. Cheong, J. Zou, and L. Zhang, “Atomistic structure of monocrystalline silicon in surface nano-modification,” Nanotechnology. 2003. link Times cited: 48 Abstract: This paper presents both experimental and theoretical studie… read moreAbstract: This paper presents both experimental and theoretical studies on the atomic structure changes of monocrystalline silicon brought about by surface nano-modification. The experiment revealed amorphous transformations with boundaries featuring faceting along {111} planes near the sample surface, which were altered to a random nature at the bottom of the transformation zone. The deformation outside the zone was minor near the surface, but advanced to heavy bending, extensive dislocations and plane shifting in the depth of the samples. Theoretical analysis closely reproduced this deformation, highlighting some scaling effects. read less USED (high confidence) S. Yip, J. Li, W. Cai, J. Chang, and D. Liao, “Atomistic measures of mechanical deformation and thermal transport processes.” 2001. link Times cited: 0 USED (high confidence) A. Belov**, K. Scheerschmidt, and U. Gösele, “Extended Point Defect Structures at Intersections of Screw Dislocations in Si: A Molecular Dynamics Study,” Physica Status Solidi (a). 1999. link Times cited: 12 Abstract: Molecular dynamics computer simulations have been employed w… read moreAbstract: Molecular dynamics computer simulations have been employed with the Tersoff interatomic potential to examine the atomic structure of (a/2) 〈110〉 screw dislocations forming regular two-dimensional arrays in silicon. The main attention is focused on the atomic configurations of dislocation intersections. The dislocations are assumed to be undissociated, following HREM observations on the low-angle (001) twist boundaries produced by silicon wafer bonding in ultrahigh vacuum. It is shown that cores of the dislocation intersections are formed by closed characteristic groups of atoms (extended point defects). The symmetry of these defects strongly depends on the fact whether the screw dislocation arrays generate a twist or a shear boundary. read less USED (low confidence) Q. Wang, N. Gui, X. Yang, J. Tu, and S. Jiang, “The effects of grain size and fractal porosity on thermal conductivity of nano-grained graphite: A molecular dynamics study,” International Journal of Heat and Mass Transfer. 2024. link Times cited: 0 USED (low confidence) S. Yang et al., “MD simulation of chemically enhanced polishing of 6H-SiC in aqueous H2O2,” Journal of Manufacturing Processes. 2023. link Times cited: 0 USED (low confidence) Y. Chen, H. Liu, C. Yan, and H. Wei, “Influence of Temperature and Incidence Angle on the Irradiation Cascade Effect of 6H-SiC: Molecular Dynamics Simulations,” Micromachines. 2023. link Times cited: 0 Abstract: SiC devices have been typically subjected to extreme environ… read moreAbstract: SiC devices have been typically subjected to extreme environments and complex stresses during operation, such as intense radiation and large diurnal amplitude differences on the lunar surface. Radiation displacement damage may lead to degradation or failure of the performance of semiconductor devices. In this paper, the effects of temperature and incidence angle on the irradiation cascade effect of 6H-SiC were investigated separately using the principles of molecular dynamics. Temperatures were set to 100 K, 150 K, 200 K, 250 K, 300 K, 350 K, 400 K and 450 K. The incidence direction was parallel to the specified crystal plane, with angles of 8°, 15°, 30°, 45°, 60° and 75° to the negative direction of the Z-axis. In this paper, the six types of defects were counted, and the microscopic distribution images and trajectories of each type of defect were extracted. The results show a linear relationship between the peak of the Frenkel pair and temperature. The recombination rate of Frenkel pairs depends on the local temperature and degree of aggregation at the center of the cascade collision. Increasing the angle of incidence first inhibits and then promotes the production of total defects and Frenkel pairs. The lowest number of total defects, Frenkel pairs and antisite defects are produced at a 45° incident angle. At an incidence angle of 75°, larger size hollow clusters and anti-clusters are more likely to appear in the 6H-SiC. read less USED (low confidence) M. Dung and T. T. Dung, “Melting Process of the Two-Dimensional Material BN: Insights from Molecular Dynamics Simulations,” Materials Science Forum. 2023. link Times cited: 0 Abstract: The structure of the two-dimensional BN containing 9941 atom… read moreAbstract: The structure of the two-dimensional BN containing 9941 atoms has been studied by classical molecular dynamics simulation with Tersoff potential. The periodic boundary condition is applied to the two x and y directions, while the z direction is free. The analysis results of the function of total energy per atom and heat capacity, mean squared displacement, diffusion coefficient, radial distribution function, distribution of coordination number, angle distribution, and ring statistics show that the melting point of the material is about 4600 K. This value is higher than the experimental value as well as the previous simulation results. The observations also show that the melting process begins at the corners and edges and then spreads across the face of the model. The breakage of the B-N bond leads to the formation of clusters of N2 molecules and B with different sizes. read less USED (low confidence) N. Wu, D. Liu, M. Zhong, Q.-M. Zheng, C. Fang, and Y. Jiang, “Analysis of Crystal Structure Transition of Polycrystalline 3c-Sic in Nanocrystalline Grinding Based on Molecular Dynamics Simulation,” SSRN Electronic Journal. 2023. link Times cited: 0 USED (low confidence) T. Panczyk and K. Nieszporek, “Formation of degraded LDPE surfaces using mechanical cleavage and shock compression analyzed by means of molecular dynamics simulations,” Computational Materials Science. 2023. link Times cited: 0 USED (low confidence) K. Yin, L. Shi, X.-N. Ma, Y. Zhong, M. Li, and X. He, “Thermal Conductivity of 3C/4H-SiC Nanowires by Molecular Dynamics Simulation,” Nanomaterials. 2023. link Times cited: 0 Abstract: Silicon carbide (SiC) is a promising material for thermoelec… read moreAbstract: Silicon carbide (SiC) is a promising material for thermoelectric power generation. The characterization of thermal transport properties is essential to understanding their applications in thermoelectric devices. The existence of stacking faults, which originate from the “wrong” stacking sequences of Si–C bilayers, is a general feature of SiC. However, the effects of stacking faults on the thermal properties of SiC are not well understood. In this study, we evaluated the accuracy of Tersoff, MEAM, and GW potentials in describing the thermal transport of SiC. Additionally, the thermal conductivity of 3C/4H-SiC nanowires was investigated using non-equilibrium molecular dynamics simulations (NEMD). Our results show that thermal conductivity exhibits an increase and then saturation as the total lengths of the 3C/4H-SiC nanowires vary from 23.9 nm to 95.6 nm, showing the size effect of molecular dynamics simulations of the thermal conductivity. There is a minimum thermal conductivity, as a function of uniform period length, of the 3C/4H-SiC nanowires. However, the thermal conductivities of nanowires weakly depend on the gradient period lengths and the ratio of 3C/4H. Additionally, the thermal conductivity of 3C/4H-SiC nanowires decreases continuously from compressive strain to tensile strain. The reduction in thermal conductivity suggests that 3C/4H-SiC nanowires have potential applications in advanced thermoelectric devices. Our study provides insights into the thermal transport properties of SiC nanowires and can guide the development of SiC-based thermoelectric materials. read less USED (low confidence) W. Zhu et al., “Effect of fracture behavior variables on hydraulic fracturing optimization by adding graphene nanosheets to sand/water mixtures: A molecular dynamics approach,” Journal of Molecular Liquids. 2023. link Times cited: 0 USED (low confidence) T. Zhou, Q. Wu, G. Zhao, Z. Wang, B. Guo, and H. Wu, “Analysis of the effect of tool geometry on the cutting process of polycrystalline Fe-Cr-W alloy based on molecular dynamics simulation,” Journal of Manufacturing Processes. 2023. link Times cited: 1 USED (low confidence) G. Zhu, M. Han, B. Xiao, and Z. Gan, “On the Microcrystal Structure of Sputtered Cu Films Deposited on Si(100) Surfaces: Experiment and Integrated Multiscale Simulation,” Molecules. 2023. link Times cited: 0 Abstract: Sputtered Cu/Si thin films were experimentally prepared at d… read moreAbstract: Sputtered Cu/Si thin films were experimentally prepared at different sputtering pressures and characterized using X-ray diffraction (XRD) and an atomic force microscope (AFM). Simultaneously, an application-oriented simulation approach for magnetron sputtering deposition was proposed in this work. In this integrated multiscale simulation, the sputtered atom transport was modeled using the Monte Carlo (MC) and molecular dynamics (MD) coupling method, and the deposition of sputtered atoms was simulated using the MD method. This application-oriented simulation approach was used to simulate the growth of Cu/Si(100) thin films at different sputtering pressures. The experimental results unveiled that, as the sputtering pressure decreased from 2 to 0.15 Pa, the surface roughness of Cu thin films gradually decreased; (111)-oriented grains were dominant in Cu thin films and the crystal quality of the Cu thin film was gradually improved. The simulation results were consistent with the experimental characterization results. The simulation results revealed that the transformation of the film growth mode from the Volmer–Weber growth mode to the two-dimensional layered growth mode resulted in a decrease in the surface roughness of Cu thin films; the increase in the amorphous compound CuSix and the hcp copper silicide with the decrease in the sputtering pressure was responsible for the improvement of the crystal quality of the Cu thin film. This work proposed a more realistic, integrated simulation scheme for magnetron sputtering deposition, providing theoretical guidance for the efficient preparation of high-quality sputtered films. read less USED (low confidence) X. Cui et al., “Investigations into effect of tool rake angle on nanocutting process for Zr-based amorphous alloy by molecular dynamics simulation,” The International Journal of Advanced Manufacturing Technology. 2023. link Times cited: 0 USED (low confidence) K. Wu et al., “Vapor Deposition Growth of Sic Crystal on 4h-Sic Substrate by Molecular Dynamics Simulation,” SSRN Electronic Journal. 2023. link Times cited: 1 Abstract: Due to the lack of appropriate experimental methods for imag… read moreAbstract: Due to the lack of appropriate experimental methods for imaging the evolution of the microstructure of materials at the growth conditions, our understanding of the physical behavior of crystal growth and defect formation during the vapor deposition growth of SiC crystals is still rather limited. In the present work, the vapor deposition growth of SiC crystal on a 4H-SiC substrate has been investigated by the molecular dynamics (MD) computer simulation method. Three different lattice planes of 4H-SiC ((0001), (112-0) and (1-100)) were selected as the surface of the substrate, and three different temperatures for substrate (2200 K, 2300 K and 2400 K) were used in growth simulations. The characteristics of the formation of different polytypes of SiC and dislocations in the grown crystals were examined. The results show that the SiC crystals were grown by a subsurface nucleation and growth mode in the vapor deposition process. For substrates with (0001) plane as the surface, the 3C-SiC single crystal was obtained in the deposited thin film. For substrates with (112-0) or (1-100) plane as the surface, the 4H-SiC single crystal was obtained instead. The temperature of the substrate was found to have a significant effect on the dislocation density generated in the grown crystals. The mechanism for the formation of Frank partial dislocations during the growth of SiC crystals has been analyzed, for which the importance of the diffusivity of atoms on the surface layer in growth has been highlighted, and it gives a good explanation of the temperature effect on dislocation formation in the grown crystals. These results can be helpful for experimental vapor deposition growth of SiC single crystals and epitaxial layers of high quality. read less USED (low confidence) A. Galashev and K. Abramova, “Molecular Dynamics Simulation of Thin Silicon Carbide Films Formation by the Electrolytic Method,” Materials. 2023. link Times cited: 0 Abstract: Silicon carbide is successfully implemented in semiconductor… read moreAbstract: Silicon carbide is successfully implemented in semiconductor technology; it is also used in systems operating under aggressive environmental conditions, including high temperatures and radiation exposure. In the present work, molecular dynamics modeling of the electrolytic deposition of silicon carbide films on copper, nickel, and graphite substrates in a fluoride melt is carried out. Various mechanisms of SiC film growth on graphite and metal substrates were observed. Two types of potentials (Tersoff and Morse) are used to describe the interaction between the film and the graphite substrate. In the case of the Morse potential, a 1.5 times higher adhesion energy of the SiC film to graphite and a higher crystallinity of the film was observed than is the case of the Tersoff potential. The growth rate of clusters on metal substrates has been determined. The detailed structure of the films was studied by the method of statistical geometry based on the construction of Voronoi polyhedra. The film growth based on the use of the Morse potential is compared with a heteroepitaxial electrodeposition model. The results of this work are important for the development of a technology for obtaining thin films of silicon carbide with stable chemical properties, high thermal conductivity, low thermal expansion coefficient, and good wear resistance. read less USED (low confidence) M. L. Pereira, J. D. Sousa, W. Brandão, D. Galvão, A. F. Fonseca, and L. A. Ribeiro, “Exploring the elastic properties and fracture patterns of Me-graphene monolayers and nanotubes through reactive molecular dynamics simulations,” Chemical Physics Letters. 2023. link Times cited: 0 USED (low confidence) Y. He, J. Sun, P. Gao, S. Song, K. Wang, and M. Tang, “Atomic removal mechanism of nano polishing for single-crystal AlN substrate via molecular dynamics,” Materials Science in Semiconductor Processing. 2023. link Times cited: 4 USED (low confidence) Z. Wang, L. Lin, Y. Feng, and F. Sun, “Enhancing the thermal boundary conductance of Cu/Diamond interface via diamond surface amorphization by molecular dynamics simulation,” Advances in Engineering Technology Research. 2023. link Times cited: 0 Abstract: Based on the non-equilibrium molecular dynamics simulation, … read moreAbstract: Based on the non-equilibrium molecular dynamics simulation, a Cu/amorphous diamond/crystalline diamond sandwich model was established to investigate the effects of the amorphous degree diamond surface and the thickness of the amorphous layer on the thermal boundary conductance of Cu/crystalline diamond. The simulation results show that the thermal boundary conductance can be enhanced by diamond surface amorphization, and increases with the increase of the amorphous degree. For the fully amorphous layer, the thermal boundary conductance increases gradually with the increase of the thickness of the amorphous layer and can be enhanced up to 4 times. The analysis of the vibrational density of states, overlap energy and phonon participation ratio shows that the diamond surface amorphization promotes the vibrational coupling between diamond and Cu atoms at low frequencies, as well as the occurrence of phonon inelastic scattering, and thus improves the thermal transport capacity of interface. read less USED (low confidence) Y. Zhang, K. Koranteng, and Y. Yi, “Characterization of graphene reinforced 3C-SiC composite as a metal-free friction material using molecular dynamics simulation,” Computational Materials Science. 2023. link Times cited: 0 USED (low confidence) D. Yu, H. Zhang, B. Li, Q.-M. Zheng, C. Fang, and N. Wu, “Molecular dynamics analysis of friction damage on nano-twin 6 H-SiC surface,” Tribology International. 2023. link Times cited: 1 USED (low confidence) K. Feng, J. Wang, S. Hao, and J. Xie, “Molecular Dynamics Study of Interfacial Micromechanical Behaviors of 6H-SiC/Al Composites under Uniaxial Tensile Deformation,” Nanomaterials. 2023. link Times cited: 1 Abstract: This paper investigated the micromechanical behavior of diff… read moreAbstract: This paper investigated the micromechanical behavior of different 6H-SiC/Al systems during the uniaxial tensile loading by using molecular dynamics simulations. The results showed that the interface models responded diversely to the tensile stress when the four low-index surfaces of the Al were used as the variables of the joint surfaces. In terms of their stress–strain properties, the SiC(0001)/Al(001) models exhibited the highest tensile strength and the smallest elongation, while the other models produced certain deformations to relieve the excessive strain, thus increasing the elongation. The SiC(0001)/Al(110) models exhibited the largest elongations among all the models. From the aspect of their deformation characteristics, the SiC(0001)/Al(001) model performed almost no plastic deformation and dislocations during the tensile process. The deformation of the SiC(0001)/Al(110) model was dominated by the slip of the 1/6 <112> Shockley partial dislocations, which contributed to the intersecting stacking faults in the model. The SiC(0001)/Al(111) model produced a large number of dislocations under the tensile loading. Dislocation entanglement was also found in the model. Meanwhile, a unique defect structure consisting of three 1/6 <110> stair-rod dislocations and three stacking faults were found in the model. The plastic deformation in the SiC(0001)/Al(112) interface model was restricted by the L-C lock and was carried out along the 1/6 <110> stair-rod dislocations’ direction. These results reveal the interfacial micromechanical behaviors of the 6H-SiC/Al composites and demonstrate the complexity of the deformation systems of the interfaces under stress. read less USED (low confidence) J. Kuo, Y.-T. Tsai, P.-H. Huang, C.-H. Lee, and C.-H. Lin, “Adsorption and purification of biogas inside graphitic nanopores: molecular dynamics simulation approach,” Journal of Molecular Modeling. 2023. link Times cited: 1 USED (low confidence) B. Li, J. Li, J. Xu, T. Xuan, and W. Fan, “Effects of cracking on the deformation anisotropy of GaAs with different crystal orientations during scratching using molecular dynamics simulations,” Tribology International. 2023. link Times cited: 3 USED (low confidence) S. Gao, H. Wang, H. Huang, and R. Kang, “Molecular simulation of the plastic deformation and crack formation in single grit grinding of 4H-SiC single crystal,” International Journal of Mechanical Sciences. 2023. link Times cited: 27 USED (low confidence) A. Zhou et al., “Investigation of nano-tribological behaviors and deformation mechanisms of Cu-Ni alloy by molecular dynamics simulation,” Tribology International. 2023. link Times cited: 7 USED (low confidence) G. Bi, Y. Li, M. Lai, and F. Fang, “Mechanism of Polishing Lutetium Oxide Single Crystals with Polyhedral Diamond Abrasive Grains Based on Molecular Dynamics Simulation,” Applied Surface Science. 2023. link Times cited: 2 USED (low confidence) T. Zhou et al., “Research on the effect of cutting parameters on the machinability of polycrystalline Fe-Cr-W alloy by molecular dynamics simulation,” Proceedings of the Institution of Mechanical Engineers, Part B: Journal of Engineering Manufacture. 2022. link Times cited: 4 Abstract: Molecular dynamics simulation has become a major theoretical… read moreAbstract: Molecular dynamics simulation has become a major theoretical analysis method for ultra precision machining of various materials. Large Scale Atomic/Molecular Massively Parallel Simulator (LAMMPS) is used to construct a molecular dynamics model for cutting polycrystalline Fe-Cr-W alloy with CBN tool. The geometric parameters of the tool model are: the rake angle is −10°, the clearance angle is 7°, and the tool tip radius is 1.5 nm, including 8570 atoms. The size of the workpiece model is 24 nm × 10 nm × 10 nm, including 203,893 atoms. Ovito is used to visually analyze the influence of cutting parameters on the machinability of workpieces. The results show that the extrusion of the tool on the workpiece makes the atoms of the workpiece move and become chips and machined surfaces. Excessive cutting speed and depth will produce large hydrostatic stress, large cutting force, high cutting temperature and deteriorate the machined surface. read less USED (low confidence) T. Zhou et al., “Molecular dynamics simulation of cutting mechanism of polycrystalline Fe-Cr-W alloy,” Mechanics of Advanced Materials and Structures. 2022. link Times cited: 1 USED (low confidence) D. Zhao, F. Dai, J. Li, and L. Zhang, “Thermal stability and mechanical properties of Si/Ge superlattice nanowires having inclination interfaces from simulations at atomic scale,” Applied Physics A. 2022. link Times cited: 1 USED (low confidence) C. Deng, J. Li, W.-qing Meng, and W. Zhao, “Effect of Particle Velocity on Microcutting Process of Fe–C Alloy by Molecular Dynamics,” Micromachines. 2022. link Times cited: 0 Abstract: In order to study the material removal mechanism of Fe–C all… read moreAbstract: In order to study the material removal mechanism of Fe–C alloy surfaces in the particle microcutting process, the molecular dynamics method was used to study the material deformation and removal rules during the particle microcutting process. By analyzing and discussing the particle cutting force, atomic energy, atomic displacement, lattice structure, and dislocation in the particle microcutting process under different cutting velocities, the material removal mechanism is revealed. The results show that the atomic binding energy of Fe–C alloy increases with an increase in particle cutting velocity. The cutting force of particles and atomic potential energy of the workpiece increase obviously. The accumulated strain energy and dislocation energy in the lattice increase, the lattice deformation becomes more severe, and the material is prone to plastic deformation. The atoms form atomic groups at the front of the particle and are then remove from the surface of Fe–C alloy in the form of chips. read less USED (low confidence) D. T. H. Hue, V.-K. Tran, V.-L. Nguyen, L. V. Lich, V. Dinh, and T. G. Nguyen, “High strain-rate effect on microstructure evolution and plasticity of aluminum 5052 alloy nano-multilayer: A molecular dynamics study,” Vacuum. 2022. link Times cited: 10 USED (low confidence) D. P. Ranjan, M. A. Owhal, D. Chakrabarti, D. S. Belgamwar, T. Roy, and D. R. Balasubramaniam, “Fundamental Insights of Mechanical Polishing on Polycrystalline Cu Through Molecular Dynamics Simulations,” SSRN Electronic Journal. 2022. link Times cited: 9 USED (low confidence) H. Wang, S. Gao, R. Kang, X. Guo, and H. Li, “Mechanical Load-Induced Atomic-Scale Deformation Evolution and Mechanism of SiC Polytypes Using Molecular Dynamics Simulation,” Nanomaterials. 2022. link Times cited: 4 Abstract: Silicon carbide (SiC) is a promising semiconductor material … read moreAbstract: Silicon carbide (SiC) is a promising semiconductor material for making high-performance power electronics with higher withstand voltage and lower loss. The development of cost-effective machining technology for fabricating SiC wafers requires a complete understanding of the deformation and removal mechanism. In this study, molecular dynamics (MD) simulations were carried out to investigate the origins of the differences in elastic–plastic deformation characteristics of the SiC polytypes, including 3C-SiC, 4H-SiC and 6H-SiC, during nanoindentation. The atomic structures, pair correlation function and dislocation distribution during nanoindentation were extracted and analyzed. The main factors that cause elastic–plastic deformation have been revealed. The simulation results show that the deformation mechanisms of SiC polytypes are all dominated by amorphous phase transformation and dislocation behaviors. Most of the amorphous atoms recovered after completed unload. Dislocation analysis shows that the dislocations of 3C-SiC are mainly perfect dislocations during loading, while the perfect dislocations in 4H-SiC and 6H-SiC are relatively few. In addition, 4H-SiC also formed two types of stacking faults. read less USED (low confidence) T. Chen, L. Dong, J. Yi, X. Ning, W. Li, and N. Wu, “Effect of Nanoindentation Temperature on Plastic Deformation of 3C-SiC Based on the Molecular Dynamics Method,” Journal of Nanomaterials. 2022. link Times cited: 0 Abstract: To explore the effect of nanoindentation temperature on the … read moreAbstract: To explore the effect of nanoindentation temperature on the plastic deformation of 3C-SiC, it is possible to analyze the 3C-SiC load-displacement changes at different temperatures and the dislocation propagation in the plastic deformation stage. The 3C-SiC nanoindentation model is established on the basis of molecular dynamics interatomic interaction potential. The model combines the 3C-SiC crystal structure to optimize the Vashishta potential function and modifies the relaxation system, system boundary, and other simulated environmental factors. The plastic deformation process of 3C-SiC at different temperatures is analyzed from multiple angles such as the load-displacement curve, the stress distribution during the plastic deformation stage of the matrix, and the formation and growth of specimen dislocations. During the pressing process, intermolecular dislocations and stress are concentrated in the elastic-plastic deformation zone. The load value of the elastic-plastic deformation zone under high temperature environment is generally higher, and the energy of the dislocation loop will be released. In the plastic deformation zone, the dislocation loop will break under the action of high temperature environmental load. The premature release of energy will cause the load value to drop. During the pressing process, the bearing capacity of 3C-SiC polycrystalline will decrease as the temperature rises. Plastic deformation occurs inside the material, and dislocations nucleate and expand from the grain boundary to the crystal and finally form a U-shaped dislocation ring. read less USED (low confidence) D. Yu, H. Zhang, X. Feng, D. Liao, and N. Wu, “Molecular Dynamics Analysis of 6H-SiC Subsurface Damage by Nanofriction,” ACS Omega. 2022. link Times cited: 0 Abstract: To investigate the subsurface damage of 6H-SiC nanofriction,… read moreAbstract: To investigate the subsurface damage of 6H-SiC nanofriction, this paper uses molecular dynamics analysis to analyze the loading process of friction 6H-SiC surfaces, thus providing an in-depth analysis of the formation mechanism of subsurface damage from microscopic crystal structure deformation characteristics. This paper constructs a diamond friction 6H-SiC nanomodel, combining the radial distribution function, dislocation extraction method, and diamond identification method with experimental analysis to verify the dislocation evolution process, stress distribution, and crack extension to investigate the subsurface damage mechanism. During the friction process, the kinetic and potential energies as well as the temperature of the 6H-SiC workpiece basically tend to rise, accompanied by the generation of dislocated lumps and cracks on the sides of the 6H-SiC workpiece. The stresses generated by friction during the plastic deformation phase lead to dislocations in the vicinity of the diamond tip friction, and the process of dislocation nucleation expansion is accompanied by energy exchange. Dislocation formation is found to be the basis for crack generation, and cracks and peeled blocks constitute the subsurface damage of 6H-SiC workpieces by diamond identification methods. Friction experiments validate microscopic crystal changes against macroscopic crack generation, which complements the analysis of the damage mechanism of the simulated 6H-sic nanofriction subsurface. read less USED (low confidence) J. Zhang, X. Wang, M. Zhang, L. Deng, and P. Gong, “The shock forming process of Cu50Zr50 metallic glasses studied via molecular dynamics simulation,” Journal of Non-Crystalline Solids. 2022. link Times cited: 6 USED (low confidence) L. Xue, G. Feng, and S. Liu, “Molecular dynamics study of temperature effect on deformation behavior of m-plane 4H–SiC film by nanoindentation,” Vacuum. 2022. link Times cited: 5 USED (low confidence) A. Srivastava, V. Pathak, M. Kumar, R. Kumar, and S. Prakash, “Mechanical properties of boron nitride nano-sheet reinforced aluminium nanocomposite: a molecular dynamics study,” Molecular Simulation. 2022. link Times cited: 2 Abstract: ABSTRACT In this article, the mechanical properties of the b… read moreAbstract: ABSTRACT In this article, the mechanical properties of the boron-nitride nano-sheet (BNNS)-reinforced aluminium (Al) nanocomposite are estimated by using molecular dynamics (MD) models. Different nanoscale representative volume elements (NRVEs) have been considered to predict the stiffness and strength properties of BNNS-Al NRVE under tensile and shear loading conditions. A comparison is also made between the stress–strain behaviour of graphene sheet (GS)-Al and BNNS-Al nanocomposites. BNNS-Al nanocomposites are found to be more ductile and less stiff than GS-Al nanocomposite. Effect of layering of BNNS on the stress–strain response is observed and found that, in contrast to the layering of graphene sheets, the stiffness properties of BNNS-reinforced Al nanocomposite are not sensitive to the layering of BNNS. It is established that the layering of BNNS marginally enhance the mechanical properties of the nanocomposite. It is also found that the chirality of BNNS marginally affects the stress–strain response of the nanocomposite irrespective of the loading condition i.e. tensile/shear loading. read less USED (low confidence) G. Zhang, J. Han, Y. Chen, J. Xiong, J. Wang, and J. Ran, “Generation mechanism and dual-dynamics simulation of surface patterns in single-point diamond turning of single-crystal copper,” Journal of Manufacturing Processes. 2022. link Times cited: 11 USED (low confidence) V. Kuryliuk, S. Semchuk, K. Dubyk, and R. Chornyi, “Structural features and thermal stability of hollow-core Si nanowires: A molecular dynamics study,” Nano-Structures & Nano-Objects. 2022. link Times cited: 3 USED (low confidence) M.-Q. Le and R. Batra, “Fracture toughness of single layer boronitrene sheet using MD simulations,” Computational Materials Science. 2022. link Times cited: 0 USED (low confidence) Q. Kang et al., “Mechanical properties and indentation-induced phase transformation in 4H–SiC implanted by hydrogen ions,” Ceramics International. 2022. link Times cited: 4 USED (low confidence) N. Luhadiya, S. I. Kundalwal, and S. K. Sahu, “Adsorption and desorption behavior of titanium-decorated polycrystalline graphene toward hydrogen storage: a molecular dynamics study,” Applied Physics A. 2021. link Times cited: 7 USED (low confidence) Q. Wang, N. Gui, X. Huang, X. Yang, J. Tu, and S. Jiang, “The effect of temperature and cascade collision on thermal conductivity of 3C-SiC: A molecular dynamics study,” International Journal of Heat and Mass Transfer. 2021. link Times cited: 10 USED (low confidence) F. Molaei et al., “Applying molecular dynamics simulation to take the fracture fingerprint of polycrystalline SiC nanosheets,” Computational Materials Science. 2021. link Times cited: 11 USED (low confidence) J. Wu et al., “MD simulation of two-temperature model in ion irradiation of 3C-SiC: Effects of electronic and nuclear stopping coupling, ion energy and crystal orientation,” Journal of Nuclear Materials. 2021. link Times cited: 5 USED (low confidence) Q. Kang et al., “Modification mechanism of collaborative ions implanted into 4H-SiC by atomic simulation and experiment,” International Journal of Mechanical Sciences. 2021. link Times cited: 9 USED (low confidence) L. Xue et al., “Study of the deposition of nanopillar-patterned 4H-SiC by molecular dynamics simulation,” Applied Surface Science. 2021. link Times cited: 8 USED (low confidence) H. Liang et al., “Investigation of the effect of Berkovich and Cube Corner indentations on the mechanical behavior of fused silica using molecular dynamics and finite element simulation,” Ceramics International. 2021. link Times cited: 7 USED (low confidence) V. K. Sutrakar, B. Javvaji, and P. Budarapu, “Fracture strength and fracture toughness of graphene: MD simulations,” Applied Physics A. 2021. link Times cited: 2 USED (low confidence) M. Zojaji, A. Hydarinasab, S. Hashemabadi, and M. Mehranpour, “Rheological study of the effects of size/shape of graphene oxide and SiO2 nanoparticles on shear thickening behaviour of polyethylene glycol 400-based fluid: molecular dynamics simulation,” Molecular Simulation. 2021. link Times cited: 3 Abstract: ABSTRACT In this computational study, the effect of the shap… read moreAbstract: ABSTRACT In this computational study, the effect of the shape and size of graphene oxide (GO) and SiO2 nanoparticles on the shear thickening Behaviour of the fluids was reported with the molecular dynamics (MD) approach. For this purpose, the viscosity of fluids with C, Si, O, and H atomic arrangements was determined by Tersoff and Lenard-Jones (LJ) interatomic force fields. Atomic stability of the simulated structures was detected after 1.000.000 time-steps, demonstrating the validity of the PEG-400-based STF. Additionally, MD simulation results indicated that addition of zigzag GO and cubic SiO2 nanoparticles to the pristine fluid would maximise the viscosity of this atomic structure. Numerically, by adding these nanostructures, the viscosity of the simulated fluid was converged to 88 Pa. s and 94 Pa. s, respectively. The jamming viscosity (discontinuous shear-thickening) changes occurred in 70 and 80 s−1 shear rates by adding GO and SiO2 nanoparticles to the pristine fluid. read less USED (low confidence) Y. Kumar, S. Sahoo, and A. Chakraborty, “Mechanical properties of graphene, defective graphene, multilayer graphene and SiC-graphene composites: A molecular dynamics study,” Physica B-condensed Matter. 2021. link Times cited: 19 USED (low confidence) Y. Fan, Z. Xu, Y. Song, and T. Sun, “Molecular dynamics simulation of silicon vacancy defects in silicon carbide by hydrogen ion implantation and subsequent annealing,” Diamond and Related Materials. 2021. link Times cited: 5 USED (low confidence) A. Shargh, G. Madejski, J. McGrath, and N. Abdolrahim, “Mechanical properties and deformation mechanisms of amorphous nanoporous silicon nitride membranes via combined atomistic simulations and experiments,” Acta Materialia. 2021. link Times cited: 8 USED (low confidence) A. Hosseini and M. N. Nasrabadi, “Investigation of vacancy defects and temperature effects on the GaN bombarding with argon atoms: Molecular dynamics simulation,” Materials Chemistry and Physics. 2021. link Times cited: 3 USED (low confidence) Z. Zhu et al., “Study on Nanoscale Friction and Wear Mechanism of Nickel-based Single Crystal Superalloy by Molecular Dynamics Simulations,” Tribology International. 2021. link Times cited: 25 USED (low confidence) C. Qiu et al., “Microstructural characteristics and mechanical behavior of SiC(CNT)/Al multiphase interfacial micro-zones via molecular dynamics simulations,” Composites Part B-engineering. 2021. link Times cited: 17 USED (low confidence) H. Dai et al., “Molecular dynamics simulation of ultra-precision machining 3C-SiC assisted by ion implantation,” Journal of Manufacturing Processes. 2021. link Times cited: 19 USED (low confidence) Y. Zhou, H. Dai, and P. Li, “Mechanism of crack evolution in nano-indentation of single crystal silicon by atomistic simulations and theoretical analysis,” Proceedings of the Institution of Mechanical Engineers, Part C: Journal of Mechanical Engineering Science. 2021. link Times cited: 7 Abstract: The molecular dynamics (MD) model of nano-indentation proces… read moreAbstract: The molecular dynamics (MD) model of nano-indentation process was established to study the crack evolution in single crystal during nano-indentation. Two workpieces with different cracks and one workpiece with no crack were selected for indentation simulation in this study. The parameters of atom displacement, coordination number (CN), temperature, potential energy and loading force in the indentation process are analyzed in detail. Cracks were found to close during nano-indentation. Two modes of crack closure are observed: cooperative displacement and indentation failure. The existence of cracks will affect the size of transformation zone and the coordination number of atoms after indentation. Besides, the existence of cracks will reduce the increase of temperature and potential energy, and the closing mode of cracks is found to affect the value of indentation load. In addition, the change of stress with indentation depth at crack tip is calculated by theoretical model. The calculated stress curves reveal the evolution trend of cracks during indentation. These results provide guidance for the production of silicon wafer with higher surface quality. read less USED (low confidence) J. Xiong, Y. Chen, Y. Dai, G. Zhang, J. Ran, and S. To, “Generation Mechanism and Dual Dynamic Simulations of Surface Patterns in Single-Point Diamond Turning of Single-Crystal Copper.” 2021. link Times cited: 0 Abstract:
Single-crystal copper (Cu), whose atom arrangement is in t… read moreAbstract:
Single-crystal copper (Cu), whose atom arrangement is in the same direction and has no grain boundary, is widely used in defense technology, civil electronics and network communication. As a diamond turnable material, fan-shaped patterns appear on the machined surface, which affects the machined surface quality and the optical function it carries. Previous studies on the surface generation mechanism in single-point diamond turning (SPDT) of Cu were limited to experimental analysis, while there is a lack of fundamental understanding of the fan-shaped pattern generation mechanism and suppression method. In the present study, the different fan-shaped patterns, surface quality, cutting force and chip morphology of the typical crystal planes (100), (110) and (111) planes of Cu were studied by both theoretical and experimental analyses. A molecular dynamics (MD) simulation was conducted to present the fundamental generation mechanism of the fan-shaped patterns from atom arrangement directions and its angle change with the main cutting direction, while a cutting dynamics model was established to simulate the generation of fan-shaped patterns on the machined surface. Based on theoretical and experimental analysis, it was found that the atom density arrangement directions of Cu and its angle change with the main cutting direction of SPDT caused fluctuations in the friction coefficient, which further caused the vibration of the cutting system and generated the fan-shaped patterns. The SPDT of crystal planes (100) can achieve the best surface quality. The present research provides a fundamental understanding of fan-shaped pattern formation on the machined surface, and provides an instruction for machining Cu to obtain better surface quality. read less USED (low confidence) S. A. Eftekhari, D. Toghraie, M. Hekmatifar, and R. Sabetvand, “Mechanical and thermal stability of armchair and zig-zag carbon sheets using classical MD simulation with Tersoff potential,” Physica E-low-dimensional Systems & Nanostructures. 2021. link Times cited: 7 USED (low confidence) A. Allouch et al., “Statistical abundance and stability of carbon nanostructures by combined condensation-annealing molecular dynamics simulations,” Computational and Theoretical Chemistry. 2021. link Times cited: 3 USED (low confidence) P. Li, X. Guo, S. Yuan, M. Li, R. Kang, and D. Guo, “Effects of grinding speeds on the subsurface damage of single crystal silicon based on molecular dynamics simulations,” Applied Surface Science. 2021. link Times cited: 21 USED (low confidence) Y. Chen et al., “Molecular dynamics simulations of scratching characteristics in vibration-assisted nano-scratch of single-crystal silicon,” Applied Surface Science. 2021. link Times cited: 34 USED (low confidence) A. V. Rumyantsev, N. Borgardt, A. Prikhodko, and Y. Chaplygin, “Characterizing interface structure between crystalline and ion bombarded silicon by transmission electron microscopy and molecular dynamics simulations,” Applied Surface Science. 2021. link Times cited: 4 USED (low confidence) Y.-hong Niu, D. Zhao, S. Wang, S. Li, Z. Wang, and H. Zhao, “Investigations on thermal effects on scratch behavior of monocrystalline silicon via molecular dynamics simulation,” Materials today communications. 2021. link Times cited: 10 USED (low confidence) S. Oyinbo, T. Jen, P. Oviroh, and Q. Gao, “Nanoindentation study in cold gas dynamic sprayed thin films using molecular dynamics simulation,” Materials Today: Proceedings. 2021. link Times cited: 3 USED (low confidence) A. Shargh, G. Madejski, J. McGrath, and N. Abdolrahim, “Molecular dynamics simulations of brittle to ductile transition in failure mechanism of silicon nitride nanoporous membranes,” Materials today communications. 2020. link Times cited: 12 USED (low confidence) Z. Tian, X. Chen, and X. Xu, “Molecular dynamics simulation of the material removal in the scratching of 4H-SiC and 6H-SiC substrates,” International Journal of Extreme Manufacturing. 2020. link Times cited: 53 Abstract: Single crystal silicon carbide (SiC) is widely used for opto… read moreAbstract: Single crystal silicon carbide (SiC) is widely used for optoelectronics applications. Due to the anisotropic characteristics of single crystal materials, the C face and Si face of single crystal SiC have different physical properties, which may fit for particular application purposes. This paper presents an investigation of the material removal and associated subsurface defects in a set of scratching tests on the C face and Si face of 4H-SiC and 6H-SiC materials using molecular dynamics simulations. The investigation reveals that the sample material deformation consists of plastic, amorphous transformations and dislocation slips that may be prone to brittle split. The results showed that the material removal at the C face is more effective with less amorphous deformation than that at the Si face. Such a phenomenon in scratching relates to the dislocations on the basal plane (0001) of the SiC crystal. Subsurface defects were reduced by applying scratching cut depths equal to integer multiples of a half molecular lattice thickness, which formed a foundation for selecting machining control parameters for the best surface quality. read less USED (low confidence) G. Wang, Z. Feng, Q. Zheng, B. Li, and H. Zhou, “Molecular dynamics simulation of nano-polishing of single crystal silicon on non-continuous surface,” Materials Science in Semiconductor Processing. 2020. link Times cited: 7 USED (low confidence) E. Zarkadoula, G. Samolyuk, Y. Zhang, and W. J. Weber, “Electronic stopping in molecular dynamics simulations of cascades in 3C–SiC,” Journal of Nuclear Materials. 2020. link Times cited: 22 USED (low confidence) S. Sadovnikov and I. A. Balyakin, “Molecular dynamics simulations of zinc sulfide deposition on silver sulfide from aqueous solution,” Computational Materials Science. 2020. link Times cited: 6 USED (low confidence) A. Mosavi et al., “Atomic interactions between rock substrate and water-sand mixture with and without graphene nanosheets via molecular dynamics simulation,” Journal of Molecular Liquids. 2020. link Times cited: 6 USED (low confidence) J. Luo, C. Zhou, Y. Cheng, and L. Liu, “Assessing the EDIP potential for atomic simulation of carbon diffusion, segregation and solubility in silicon melt,” Journal of Crystal Growth. 2020. link Times cited: 2 USED (low confidence) Y.-C. Wang, Y. Zhu, Z. Z. He, and H. Wu, “Multiscale investigations into the fracture toughness of SiC/graphene composites: Atomistic simulations and crack-bridging model,” Ceramics International. 2020. link Times cited: 16 USED (low confidence) K. Zhu, X. Zhang, X. Yuan, G. Li, and P. Ren, “Molecular dynamics simulation of grain size effect on friction and wear of nanocrystalline zirconium,” Proceedings of the Institution of Mechanical Engineers, Part J: Journal of Engineering Tribology. 2020. link Times cited: 5 Abstract: In this study, molecular dynamics simulation was conducted t… read moreAbstract: In this study, molecular dynamics simulation was conducted to investigate the frictional behaviors between diamond tool and zirconium (Zr) substrates at the nanoscale. The effects of grain size on friction and wear were discussed under different sliding velocities. The simulation results showed that the friction forces had similar variation tendencies under different sliding velocities. Besides, the friction responses were stronger at high sliding velocities because of the atomic adhesion while the ploughing effect was more obvious at slower sliding velocity. Moreover, both the friction forces and the wear amounts increased with the decrease in the average grain sizes of the substrates. To explain this phenomenon, the internal mechanism was investigated by using the dislocation extract algorithm and the atomic displacement analyses. The results showed that the [0001]-oriented single crystalline substrate was prone to form continuous dislocation structures moving tangentially along the sliding direction due to the characteristic of Zr's slip systems, whereas grain boundaries conducted the deformation further into the polycrystalline substrates, increasing the contact areas and causing atomic accumulation in front, both resulted in stronger friction responses and wear. Accordingly, with the decrease in average grain sizes, the substrates experienced more severe subsurface damage and the deformation mechanism of nanocrystalline Zr had evolved from dislocation emission to grain boundary rotation and sliding. read less USED (low confidence) S. Wang and K. Komvopoulos, “Molecular dynamics simulations of internal stress evolution in ultrathin amorphous carbon films subjected to thermal annealing,” Thin Solid Films. 2020. link Times cited: 7 USED (low confidence) M. Kohestanian, Z. sohbatzadeh, and S. Rezaee, “Mechanical properties of continuous fiber composites of cubic silicon carbide (3C-SiC) / different types of carbon nanotubes (SWCNTs, RSWCNTs, and MWCNTs): A molecular dynamics simulation,” Materials today communications. 2020. link Times cited: 11 USED (low confidence) B. Li et al., “Microstructural and elemental evolution of polycrystalline α-SiC irradiated with ultra-high-fluence helium ions before and after annealing,” Fusion Engineering and Design. 2020. link Times cited: 16 USED (low confidence) Y. Fan, W. Wang, Z. Hao, and C. Y. Zhan, “Work hardening mechanism based on molecular dynamics simulation in cutting Ni–Fe–Cr series of Ni-based alloy,” Journal of Alloys and Compounds. 2020. link Times cited: 57 USED (low confidence) S. A. A. Kalkhoran, M. Vahdati, and J. Yan, “Effect of relative tool sharpness on subsurface damage and material recovery in nanometric cutting of mono-crystalline silicon: A molecular dynamics approach,” Materials Science in Semiconductor Processing. 2020. link Times cited: 19 USED (low confidence) V.-T. Pham and T. Fang, “Pile-up and heat effect on the mechanical response of SiGe on Si(0 0 1) substrate during nanoscratching and nanoindentation using molecular dynamics,” Computational Materials Science. 2020. link Times cited: 35 USED (low confidence) J. Yan and S. Y. Chen, “Mechanical properties of monolayer antimony carbide: A molecular dynamics simulation,” Materials today communications. 2020. link Times cited: 0 USED (low confidence) K. Sadki, F. Z. Zanane, M. Ouahman, and L. B. Drissi, “Molecular dynamics study of pristine and defective hexagonal BN, SiC and SiGe monolayers,” Materials Chemistry and Physics. 2020. link Times cited: 13 USED (low confidence) M. Abdollahi, J. Davoodi, and M. Mohammadi, “Influence of point and linear defects on thermal and mechanical properties of germanium nanowire: a molecular dynamics study,” Materials Research Express. 2020. link Times cited: 0 Abstract: In the nanoscale dimensions, semiconductor nanowires such as… read moreAbstract: In the nanoscale dimensions, semiconductor nanowires such as germanium nanowires (GeNWs) are appropriate candidates for using field-effect transistors, Josephson junctions, sensors and so on. However, such uses require detailed knowledge of the physical properties of GeNW. Thus we investigated the thermal conductivity and stress-strain diagram of GeNW with lattice vacancy and linear imperfection. Non-equilibrium molecular dynamics simulation as numerical method was employed in this research. The three body Tersoff potential was employed to describe interaction between germanium atoms in GeNW. Two types of defects, point and linear, were applied to the nanowire. The Nose-Hoover thermostat was employed to control temperature of the system. We then studied thermal conductivity and Young’s modulus in three crystallography directions [100], [110] and [111]. Our MD results showed that in the case of 8% point vacancy, the thermal conductivity decreased greater than 70% and Yong’s modulus decreased about 25% for three crystallography directions. read less USED (low confidence) J. Wang, H. Chi, M. Lv, X. Liu, Y. Li, and Y. Zhao, “Effect of silicon carbide hard particles scratch on the diamond cutting tools groove wear,” Proceedings of the Institution of Mechanical Engineers, Part C: Journal of Mechanical Engineering Science. 2020. link Times cited: 4 Abstract: The flank faces of diamond cutting tools are characterized b… read moreAbstract: The flank faces of diamond cutting tools are characterized by the groove wear when the tools are used to machine single crystal silicon workpieces precisely, which significantly affects the quality of the machined surface. Many researchers confirmed the existence of SiC hard particles and inferred that hard particles scratch led to the groove wear on tools flank face. However, little literature can be found to reveal the formation process of tools groove wear. Therefore, in this paper, a scratch model of SiC hard particles and diamond tool is proposed by molecular dynamics simulation method to investigate the formation mechanism of the groove wear on the tools flank face. The two basic scratch conditions, namely mechanical scratch and rolling scratch, are utilized to simulate hard particles motion on diamond tools surface respectively, and the tools wear are suggested by the variation in coordination numbers. It can be concluded that owing to the high temperature, the locally softened performance of diamond tools combined with continuous effects of SiC hard particles are the main factors that lead to the formation of the groove wear on the tools flank face. read less USED (low confidence) Z. Tian, X. Xu, F. Jiang, J. Lu, Q. Luo, and J. Lin, “Study on nanomechanical properties of 4H-SiC and 6H-SiC by molecular dynamics simulations,” Ceramics International. 2019. link Times cited: 47 USED (low confidence) S. Zhai, C. Zhang, N. Zhou, L. Huang, M. Lin, and L. Zhou, “The twin formations on different growth planes of silicon crystal growth from melt by a molecular dynamics study,” Physica B: Condensed Matter. 2019. link Times cited: 9 USED (low confidence) S. H. Boroushak, S. Ajori, and R. Ansari, “Characterization of the structural instability of BxCyNz heteronanotubes via molecular dynamics simulations,” Materials Research Express. 2019. link Times cited: 6 Abstract: Carbon nanotubes (CNTs) possess unique structural properties… read moreAbstract: Carbon nanotubes (CNTs) possess unique structural properties which can be modified by several methods such as partial and full atom substitution. In this method also known as doping, novel hybrid tubular structures with desired and new characteristics can be synthesized. To this end, Boron (B) and Nitrogen (N) are selected as dopants and then by using molecular dynamics (MD) simulations the structural behavior of the new heteronanotubes are investigated. Moreover, the buckling behavior of these novel nanotube alongside the pure CNT and BN nanotube (BNNT) are studied. Apparently, the critical forces of the newly formed structures are computed between those of pure CNT and BNNT. Further, a combination of the doped structures and pure ones are used to simulate hybrid double-wall nanotubes and then their buckling response under axial compressive load is studied. Attained results demonstrated that double-walled hybrid structures possess mechanical stabilities lower and higher than pure double-walled CNT and BNNT, respectively. read less USED (low confidence) P. Zhou et al., “Molecular dynamics simulation of SiC removal mechanism in a fixed abrasive polishing process,” Ceramics International. 2019. link Times cited: 44 USED (low confidence) Z. Wu, W. Liu, and L. Zhang, “Effect of structural anisotropy on the dislocation nucleation and evolution in 6H SiC under nanoindentation,” Ceramics International. 2019. link Times cited: 23 USED (low confidence) S. Ajori, H. Parsapour, R. Ansari, and A. Ameri, “Buckling behavior of various metallic glass nanocomposites reinforced by carbon nanotube and Cu nanowire: A molecular dynamics simulation study,” Materials Research Express. 2019. link Times cited: 19 Abstract: The reinforcement of various materials by nanofillers as nan… read moreAbstract: The reinforcement of various materials by nanofillers as nanocomposites has recently received the attention of many researchers. In the present research, molecular dynamics simulations are used to investigate the influence of nanowire (NW)/carbon nanotube (CNT) reinforcement on the buckling behavior of metallic glass matrix nanocomposites (MGMNCs). The buckling characteristics of nanocomposites made by adding Cu NWs, CNTs and Cu NW-encapsulated CNTs to metallic glass matrices are studied. The results demonstrate that MG alloys comprising just two elements (Cu and Zr) with higher Cu percentage have higher mechanical stability. Also, it is observed that adding NW leads to a negative effect on the buckling behavior, while adding CNT and NW-encapsulated CNT considerably increases the buckling force and strain of the metallic glass models. Moreover, it is found that the filled CNT is the most effective nanofiller for amending the buckling behavior of metallic glasses. Furthermore, as the size of nanofillers gets larger, the critical force increases and the critical strain decreases. read less USED (low confidence) H. Dai, F. Zhang, and J. Chen, “A study of ultraprecision mechanical polishing of single-crystal silicon with laser nano-structured diamond abrasive by molecular dynamics simulation,” International Journal of Mechanical Sciences. 2019. link Times cited: 35 USED (low confidence) G. He, C. Xu, C. Liu, H. Liu, and H. Wang, “Grain size and temperature effects on the indentation induced plastic deformations of nano polycrystalline diamond,” Applied Surface Science. 2019. link Times cited: 12 USED (low confidence) F. Ribeiro, M. Bertolus, and M. Defranceschi, “Investigation of Amorphization-Induced Swelling in SiC: A Classical Molecular Dynamics Study,” International Conference of Computational Methods in Sciences and Engineering 2004 (ICCMSE 2004). 2019. link Times cited: 0 USED (low confidence) C. Zhang, H. Zhou, Y. Zeng, L. Zheng, Y. Zhan, and K. Bi, “A reduction of thermal conductivity of non-periodic Si/Ge superlattice nanowire: Molecular dynamics simulation,” International Journal of Heat and Mass Transfer. 2019. link Times cited: 19 USED (low confidence) M. Azizinia, B. Mehrafrooz, A. Montazeri, and A. Rajabpour, “Thermal transport engineering in single layered graphene sheets via MD simulations: On the effect of nickel coating,” International Journal of Thermal Sciences. 2019. link Times cited: 11 USED (low confidence) H. Dai, J. Chen, and G. Liu, “A numerical study on subsurface quality and material removal during ultrasonic vibration assisted cutting of monocrystalline silicon by molecular dynamics simulation,” Materials Research Express. 2019. link Times cited: 30 Abstract: Molecular dynamics (MD) simulation is used to study the subs… read moreAbstract: Molecular dynamics (MD) simulation is used to study the subsurface quality and material removal of single crystal silicon with a diamond tool during ultrasonic elliptical vibration assisted cutting (UEVAC), 1D ultrasonic vibration assisted cutting (1D UVAC) and traditional cutting (TC) process. In the simulations, a long-range analytical bond order potential is used to describe the interaction inside the silicon specimen, providing a more accurate depiction of the atomic scale mechanisms of ductile plasticity, brittle fracture, and structural changes in silicon. The results show that UEVAC and 1D UVAC in cutting brittle material silicon causes a much smaller cutting force, much lower von Mises stress at the subsurface, larger material remove rate, lower compressive normal stress σ x x and σ y y , and smaller shear stress τ x y . In addition, the hydrostatic stress of subsurface for TC and 1D UVAC is much higher than that for UEVAC, which results in fewer Si-II and bct5-Si formed from the original Si-I in UEVAC. Moreover, the number of other atoms for UEVAC is overall smaller than those of using TC and 1D UVAC, which confirms that UEVAC produces a better subsurface. And atomic flow field analysis shows that the UEVAC tends to cut silicon in a more ductile mode. Besides, the temperature in front of tool edge and below the tool flank face of TC is much higher. This means that 1D UVAC and UEVAC have a positive effect on the tool life. However, the temperature in subsurface zone is overall larger, which reveals that 1D UVAC and UEVAC have a negative effect on the subsurface temperature. read less USED (low confidence) Z. Hao, R. Cui, Y. Fan, and J. Lin, “Diffusion mechanism of tools and simulation in nanoscale cutting the Ni–Fe–Cr series of Nickel-based superalloy,” International Journal of Mechanical Sciences. 2019. link Times cited: 43 USED (low confidence) J. Zhan et al., “Tensile deformation of nanocrystalline Al-matrix composites: Effects of the SiC particle and graphene,” Computational Materials Science. 2019. link Times cited: 20 USED (low confidence) L. Li et al., “Nanoindentation response of monocrystalline copper under various tensile pre-deformations via molecular dynamic simulations,” Advances in Mechanical Engineering. 2018. link Times cited: 7 Abstract: The mechanical properties of a material can be positively or… read moreAbstract: The mechanical properties of a material can be positively or negatively affected by its applied or residual stress. In this article, a series of molecular dynamic simulations were adopted to investigate the nanoindentation response of monocrystalline copper under tensile pre-deformation. Nanoindentation simulation under stress-free condition was compared with those under pre-tension strain values of 1.2%, 2.4% and 3.6%. Load–displacement curves with hardness value and recovery rates of total work for nanoindentation based on various tensile pre-deformations were obtained and discussed. It indicated that tensile pre-deformations resulted in a higher potential energy in substrate and a lower external energy will be introduced to realize the same elastic or plastic deformation during indentation. Moreover, the evolution of interior defects during indentation was also observed and analysed. The results showed that tensile pre-strain can influence dislocation nucleation behaviour of material during indentation. This article proposed a special molecular dynamic simulation method to characterize the mechanical properties of the material under tensile pre-deformations via nanoindentation, which gives an effective approach to characterize residual stresses in micro- and nanoscale and will have promising application in mechanical characterization of Microelectro Mechanical Systems devices and structures. Further analysis based on experiments will be done in our further research work. read less USED (low confidence) T. Yuanzheng, Y. He, L. Ma, Z. Xiaoguang, and J. Xue, “Molecular dynamics simulation of carbon nanotube-enhanced laser-induced explosive boiling on a free surface of an ultrathin liquid film,” International Journal of Heat and Mass Transfer. 2018. link Times cited: 5 USED (low confidence) P. Ranjan, R. Balasubramaniam, and V. Jain, “Molecular Dynamics Simulation of Mechanical Polishing on Stainless Steel Using Diamond Nanoparticles,” Journal of Manufacturing Science and Engineering. 2018. link Times cited: 7 Abstract: Mechanical polishing is one of the essential attributes of n… read moreAbstract: Mechanical polishing is one of the essential attributes of nanofinishing. To maintain precision during nanofinishing process, the mechanical polishing needs to be studied and analyzed at nanometric scale. In view of this, a set of molecular dynamics simulation has been carried out to analyze the process behavior and its effects on abrasive particles. After simulation, it is observed that the finishing force and velocity damage the abrasive particle by changing its phase from diamond cubic to graphite. Thus, the abrasive particles need replacement in a scheduled time-bound manner. In addition, a strategy has been proposed for efficient and economic polishing. read less USED (low confidence) P. Chakraborty, G. Xiong, L. Cao, and Y. Wang, “Lattice thermal transport in superhard hexagonal diamond and wurtzite boron nitride: A comparative study with cubic diamond and cubic boron nitride,” Carbon. 2018. link Times cited: 28 USED (low confidence) Y. Yan, Y. Lei, and S. Liu, “Tensile responses of carbon nanotubes-reinforced copper nanocomposites: Molecular dynamics simulation,” Computational Materials Science. 2018. link Times cited: 28 USED (low confidence) D. K. Das, J. Sarkar, and S. K. Singh, “Effect of sample size, temperature and strain velocity on mechanical properties of plumbene by tensile loading along longitudinal direction: A molecular dynamics study,” Computational Materials Science. 2018. link Times cited: 21 USED (low confidence) T. Narumi, Y. Shibuta, and T. Yoshikawa, “Molecular dynamics simulation of interfacial growth of SiC from Si–C solution on different growth planes,” Journal of Crystal Growth. 2018. link Times cited: 3 USED (low confidence) X. Ma et al., “Graphitization resistance determines super hardness of lonsdaleite, nanotwinned and nanopolycrystalline diamond,” Carbon. 2018. link Times cited: 25 USED (low confidence) G. Zhu, J. Sun, L. Zhang, and Z. Gan, “Molecular dynamics simulation of temperature effects on deposition of Cu film on Si by magnetron sputtering,” Journal of Crystal Growth. 2018. link Times cited: 20 USED (low confidence) J. Xu, S. Dai, H. Li, and J. Yang, “Molecular dynamics simulation of the thermal conductivity of graphitized graphene/polyimide films,” New Carbon Materials. 2018. link Times cited: 7 USED (low confidence) M. Izadifar, R. Abadi, A. N. Shirazi, N. Alajlan, and T. Rabczuk, “Nanopores creation in boron and nitrogen doped polycrystalline graphene: A molecular dynamics study,” Physica E-low-dimensional Systems & Nanostructures. 2018. link Times cited: 13 USED (low confidence) C. Huang et al., “Molecular dynamics simulations for responses of nanotwinned diamond films under nanoindentation,” Ceramics International. 2017. link Times cited: 40 USED (low confidence) C. Zhang, H.-Z. Song, F. Mao, C. Wang, D.-Q. Wang, and F.-S. Zhang, “Molecular dynamics simulation of irradiation damage of SiC/Gra/SiC composites,” Nuclear Instruments & Methods in Physics Research Section B-beam Interactions With Materials and Atoms. 2017. link Times cited: 4 USED (low confidence) T. Nguyen-Van, T. Nguyen-Danh, and Q. Le-Minh, “Atomistic Simulation of Boron Nitride Nanotubes Under Bending.” 2017. link Times cited: 0 USED (low confidence) Z. Zhang, P. Chen, and F. Qin, “Molecular dynamics simulation on subsurface damage layer during nano grinding process of silicon wafer,” 2017 18th International Conference on Electronic Packaging Technology (ICEPT). 2017. link Times cited: 12 Abstract: The subsurface damage has a siginificant effect on the stren… read moreAbstract: The subsurface damage has a siginificant effect on the strength of the wafer. To investigate the effect of the grinding speed and depth of cut on the surface and subsurface damage, a series of large scale MD simulation of nano grinding of silicon is performed. The results show that the monocrystalline silicon lattice undergoes extrusion and shear deformation, lattice reconstruction and amorphous phase transformation are also observed during the grinding process. It also turned that the grinding speed has an optimal value approximately 160m/s in the range of 50–400 m/s. By considering the variation of subsurface damage thickness for various depths of grinding at the grinding speed of 160m/s. The results show that the subsurface damage are gradually increasing from 9.5 Å to 20.5 Å with the augment of the depth of cut from 5 Å to 30 Å. Based on the above conclusions, it can be predicted that smaller depth of cut could reduce subsurface damage. read less USED (low confidence) K. Fung, C. Tang, and C. Cheung, “Molecular dynamics analysis of the effect of surface flaws of diamond tools on tool wear in nanometric cutting,” Computational Materials Science. 2017. link Times cited: 41 USED (low confidence) Y. Wei, H. Wang, X. Lu, X. Fan, and H. Wei, “Tensile mechanical properties of c-BN thin layers under tension: A molecular dynamics simulation,” Computational Materials Science. 2017. link Times cited: 2 USED (low confidence) T. Liu, X. Guo, Q. Li, R. Kang, and D. Guo, “Study on the Surface Damage Layer in Multiple Grinding of Quartz Glass by Molecular Dynamics Simulation,” Journal of Nano Research. 2017. link Times cited: 5 Abstract: The paper focuses on the surface damage of quartz glass in m… read moreAbstract: The paper focuses on the surface damage of quartz glass in multiple grinding, so as to find out the machining parameters that can improve the surface quality of quartz glass. Molecular dynamics (MD) method is adopted to machine the quartz glass. Firstly, the initial grinding is done on quartz glass with the depth of 12 Å. Based on the initial grinding, no feed grinding processes are done for three times separately and the feed grinding processes are carried out on the damage layer left by the previous process. By the coordination number (CN), machined surface topographies of quartz glass are gained and regions of densification are marked. Moreover, the damage layer thickness of different machined surface is also calculated. By analyzing the density of different surface damage layers, the regulation of the density distribution is obtained. Finally, the nanoindentation hardness is gained by different load-displacement curves in nanoindentation simulation. The results show that the first no feed grinding and the second feed grinding can improve the accuracy and quality of grinding. Too many no feed grinding processes and other feed grinding processes will induce serious damage of the machined surface, which is clearly showed in the obvious increase in the density, hardness and thickness of the damage layer. At last, the results of the density analysis and nanoindentation also proved that the densification and hardness of quartz glass cannot increase unlimited. The results can be applied in the ultra-precision grinding of quartz glass to control the thickness of damage layer and improve the quality of processing. read less USED (low confidence) C. Huang et al., “Nanoindentation of ultra-hard cBN films: A molecular dynamics study,” Applied Surface Science. 2017. link Times cited: 29 USED (low confidence) P. Brault et al., “Molecular dynamics simulations of ternary PtxPdyAuz fuel cell nanocatalyst growth,” International Journal of Hydrogen Energy. 2016. link Times cited: 8 USED (low confidence) Y. Zhao et al., “Molecular dynamics simulation of nano-indentation of (111) cubic boron nitride with optimized Tersoff potential,” Applied Surface Science. 2016. link Times cited: 25 USED (low confidence) H. Dai, Z. Xu, and X. Yang, “Water Permeation and Ion Rejection in Layer-by-Layer Stacked Graphene Oxide Nanochannels: A Molecular Dynamics Simulation,” Journal of Physical Chemistry C. 2016. link Times cited: 114 Abstract: Layer-by-layer assembled graphene oxide (GO) has been consid… read moreAbstract: Layer-by-layer assembled graphene oxide (GO) has been considered as a high-efficiency novel membrane material. However, its performance of water permeation and ion rejection remains largely unresolved. Herein we constructed a model of a GO membrane using laminate nanochannels with aligned flexible multilayered GO sheets, on which functional groups were randomly distributed based on the Lerf–Klinowski model. The water permeation and ion rejection in the flexible GO membranes with various pore widths and surface oxidization degrees were simulated. Our results indicate water flow rate in the GO nanochannels is significantly slowed, which is quantitatively equivalent with the prediction using the no-slip Poiseuille equation. The simulated results suggest the capillary channels within GO stacked laminated membranes might not always work as the major flow route for water to permeate. It is observed that confined water structure becomes more disordered and loose within the corrugated GO nanochannels. The interfa... read less USED (low confidence) J. Davoodi, M. Safaralizade, and M. Yarifard, “Molecular dynamics simulation of a Gold nanodroplet in contact with graphene,” Materials Letters. 2016. link Times cited: 11 USED (low confidence) P. Käshammer, N. Borgardt, M. Seibt, and T. Sinno, “Quantitative assessment of molecular dynamics-grown amorphous silicon and germanium films on silicon (111),” Surface Science. 2016. link Times cited: 3 USED (low confidence) X. Guo, Q. Li, T. Liu, C. Zhai, R. Kang, and Z. Jin, “Molecular dynamics study on the thickness of damage layer in multiple grinding of monocrystalline silicon,” Materials Science in Semiconductor Processing. 2016. link Times cited: 41 USED (low confidence) H. Li, X. Tang, F. Chen, H. Huang, J. Liu, and D. Chen, “Molecular dynamics study of radiation damage and microstructure evolution of zigzag single-walled carbon nanotubes under carbon ion incidence,” Nuclear Instruments & Methods in Physics Research Section B-beam Interactions With Materials and Atoms. 2016. link Times cited: 5 USED (low confidence) Y. Fan, T. Fang, C.-C. Huang, and T.-H. Chen, “Atomic simulation of wrinkling and deformation in curved graphene nanoribbons under boundary confinement,” Materials & Design. 2016. link Times cited: 10 USED (low confidence) S. Xu, Q. Wan, Z. Sha, and Z. Liu, “Molecular dynamics simulations of nano-indentation and wear of the γTi-Al alloy,” Computational Materials Science. 2015. link Times cited: 28 USED (low confidence) X. Du et al., “Molecular dynamics investigations of mechanical behaviours in monocrystalline silicon due to nanoindentation at cryogenic temperatures and room temperature,” Scientific Reports. 2015. link Times cited: 73 USED (low confidence) S. Zhao and J. Xue, “Modification of graphene supported on SiO2 substrate with swift heavy ions from atomistic simulation point,” Carbon. 2015. link Times cited: 41 USED (low confidence) X. Guo, C. Zhai, R. Kang, and Z. Jin, “The mechanical properties of the scratched surface for silica glass by molecular dynamics simulation,” Journal of Non-crystalline Solids. 2015. link Times cited: 27 USED (low confidence) B. Gueye, Y. Zhang, Y. Wang, and Y. Chen, “Origin of frictional ageing by molecular dynamics simulation of a silicon tip sliding over a diamond substrate,” Tribology International. 2015. link Times cited: 6 USED (low confidence) S. James and M. Sundaram, “Molecular Dynamics Simulation Study of Tool Wear in Vibration Assisted Nano-Impact-Machining by Loose Abrasives,” Journal of Micro and Nano-Manufacturing. 2015. link Times cited: 5 USED (low confidence) M.-Q. Le and D.-T. Nguyen, “Atomistic simulations of pristine and defective hexagonal BN and SiC sheets under uniaxial tension,” Materials Science and Engineering A-structural Materials Properties Microstructure and Processing. 2014. link Times cited: 57 USED (low confidence) K. Fung, C. Y. Tang, C. Cheung, and W. C. Law, “Molecular Dynamics Simulation of Plastic Deformation of Diamond at an Elevated Temperature,” Key Engineering Materials. 2014. link Times cited: 2 Abstract: Single point diamond tools are commonly used for ultraprecis… read moreAbstract: Single point diamond tools are commonly used for ultraprecision machining. At high cutting speeds, frictional contact and local heat may cause material damage to the diamond tool. The diamond crystal is softened and its mechanical strength decreases with the increase in temperature. Plastic deformation of diamonds was recently reported in some experimental studies. In this work, a molecular dynamics (MD) simulation was implemented to predict the deformation of single crystal diamond at various temperatures. Diamond is brittle at room temperature, however, it starts to exhibit plastic dislocation at a temperature above 1200 K under a confining pressure. The condition in ultraprecision machining is indeed a temperature gradient distribution at the tool tip, between the maximum temperature at the tool-workpiece interface and the average temperature at the core. The simulation results predicted that diamond deformed plastically under the gradient between 1500K and 860K. It is surprising that secondary cracks were resulted from the gradient, as comparing to a single slip obtained in an evenly distributed temperature. Bond dissociation nucleated the fractures along the (111) shuffle planes, perfect dislocation merely occurred in the hot zone and sp3-to-sp2 disorder at the cool zone. The temperature gradient created a lattice mismatch and nucleated the secondary cracks. The results give an insight that a catastrophic fracture and local material damage can occur at a diamond tool tip at the cutting temperature above 1200 K, due to softening and graphitization. read less USED (low confidence) J.-C. Huang and F. Cheng, “The Nanocutting by Rigid/Elastic Tools with Nose Radius at the Gas Environment Using Molecular Dynamics Simulations,” Applied Mechanics and Materials. 2014. link Times cited: 1 Abstract: . This study successfully simulated the single crystal coppe… read moreAbstract: . This study successfully simulated the single crystal copper nanocutting by a rigid body /elastic tools with nose radius at the nitrogen gas environment using molecular dynamics, and analyzed the workpiece temperature distribution and dislocation during nanocutting. After simulations, it can be found that when cutting with the elastic body tool, the tool itself was still distorted slightly, however, the cutting results of the elastic tool and the rigid body tool of the tool are not the same. The chip temperature was highest near the central rake and nose.The workpiece temperature when the elastic body tool cutting was lower; the temperature in the nose and rake plane is the highest, the more away from the nose, the lower the temperature. read less USED (low confidence) Q. Wang, C. Wang, Y. Zhang, and T. Li, “Molecular dynamics study on interfacial thermal conductance of unirradiated and irradiated SiC/C,” Nuclear Instruments & Methods in Physics Research Section B-beam Interactions With Materials and Atoms. 2014. link Times cited: 11 USED (low confidence) L. Xie, P. Brault, J. Bauchire, A. Thomann, and L. Bedra, “Molecular dynamics simulations of clusters and thin film growth in the context of plasma sputtering deposition,” Journal of Physics D: Applied Physics. 2014. link Times cited: 40 Abstract: Carrying out molecular dynamics (MD) simulations is a releva… read moreAbstract: Carrying out molecular dynamics (MD) simulations is a relevant way to understand growth phenomena at the atomic scale. Initial conditions are defined for reproducing deposition conditions of plasma sputtering experiments. Two case studies are developed to highlight the implementation of MD simulations in the context of plasma sputtering deposition: ZrxCu1−x metallic glass and AlCoCrCuFeNi high entropy alloy thin films deposited onto silicon. Effects of depositing atom kinetic energies and atomic composition are studied in order to predict the evolution of morphologies and atomic structure of MD grown thin films. Experimental and simulated x-ray diffraction patterns are compared. read less USED (low confidence) Y. Yang, H. Zhao, H. Liu, and L. Zhang, “A Study of Abrasive Rotating Velocity Effect on Monocrystalline Silicon in Ultra-Precision Mechanical Polishing via Molecular Dynamic Simulation,” Key Engineering Materials. 2014. link Times cited: 7 Abstract: A three-dimensional molecular dynamics (MD) simulation is co… read moreAbstract: A three-dimensional molecular dynamics (MD) simulation is conducted to investigate the effect of the abrasive rotating velocity on monocrystalline silicon specimen by mechanical polishing at atomistic scale. By monitoring relative positions of atoms in the monocrystalline silicon specimen, the microstructure of monocrystalline silicon is clearly identified and analyzed. The simulation results show that better machined surface quality is obtained and more phase transformation atoms occur with small abrasive rotating velocity. When the abrasive rotating is high, the surface quality deteriorates and amorphous layer thickens.These results provide us an effective approach to analyze the mechanism of material deformation and the formation of the machined surface after ultra-precision polishing. read less USED (low confidence) S. Goel, S. Joshi, G. Abdelal, and A. Agrawal, “Molecular dynamics simulation of nanoindentation of Fe3C and Fe4C,” Materials Science and Engineering A-structural Materials Properties Microstructure and Processing. 2014. link Times cited: 59 USED (low confidence) J.-C. Huang and F. Cheng, “The Study on the Nanocutting by Rigid Body Tool at the Gas Environment Using Molecular Dynamics Simulations,” Applied Mechanics and Materials. 2014. link Times cited: 0 Abstract: This study successfully simulated the single crystal copper … read moreAbstract: This study successfully simulated the single crystal copper nanocutting with a rigid body tool at the nitrogen gas environment using molecular dynamics, and analyzed the workpiece stress distribution and dislocation during nanocutting. After simulations, a diamond rigid tool with a completely sharp produce a shear plane during cutting. The distribution of equivalent stress was greatest at the shear zone and that residual stress occurred on the machined surface. And the stress gets smaller as the distance from the chip surface is farther. read less USED (low confidence) P. Sule, M. SzendrHo, C. Hwang, and L. Tapaszt’o, “Rotation misorientated graphene moire superlattices on Cu(111): classical molecular dynamics simulations and scanning tunneling microscopy studies,” Carbon. 2014. link Times cited: 37 USED (low confidence) C. Ji, J. Shi, Z. Liu, and Y. Wang, “Comparison of tool–chip stress distributions in nano-machining of monocrystalline silicon and copper,” International Journal of Mechanical Sciences. 2013. link Times cited: 25 USED (low confidence) I. Chang and C.-M. Huang, “Vibrational Behavior of Single-Walled Carbon Nanotubes: Atomistic Simulations,” Japanese Journal of Applied Physics. 2013. link Times cited: 7 Abstract: This study examines the vibrational behaviors of both armcha… read moreAbstract: This study examines the vibrational behaviors of both armchair and zigzag carbon nanotubes (CNTs). The natural longitudinal/flexural/torsional/radial frequencies of CNTs were extracted and analyzed simultaneously from an equilibrium molecular dynamics (MD) simulation without imposing any initial modal displacement or force. Initial random atomic velocities, which were assigned to fit the simulated temperature, could be considered as an excitation on CNTs composing of wide range of spatial frequencies. The position and velocity of each atom at every time step was calculated using finite difference algorithm, and fast Fourier transform (FFT) was used to perform time-to-frequency domain transform. The effects of CNT length, radius, chirality, and boundary condition on the vibrational behaviors of CNTs were systematically examined. Moreover, the simulated natural frequencies and mode shapes were compared with the predictions based on continuum theories, i.e., rod, Euler–Bernoulli beam and nonlocal Timoshenko beam, to examine their applicability in nanostructures. read less USED (low confidence) C. Hou et al., “Petascale molecular dynamics simulation of crystalline silicon on Tianhe-1A,” The International Journal of High Performance Computing Applications. 2013. link Times cited: 24 Abstract: An efficient and highly scalable bond-order potential code h… read moreAbstract: An efficient and highly scalable bond-order potential code has been developed for the molecular dynamics simulation of bulk silicon, reaching 1.87 Pflops (floating point operations per second) in single precision on 7168 graphic processing units (GPUs) of the Tianhe-1A system. Furthermore, by coupling GPUs and central processing units, we also simulated surface reconstruction of crystalline silicon at the sub-millimeter scale with more than 110 billion atoms, reaching 1.17 Pflops in single precision plus 92.1 Tflops in double precision on the entire Tianhe-1A system. Such simulations can provide unprecedented insight into a variety of microscopic behaviors or structures, such as doping, defects, grain boundaries, and surface reactions. read less USED (low confidence) J.-W. Jiang, H. S. Park, and T. Rabczuk, “Molecular dynamics simulations of single-layer molybdenum disulphide (MoS2): Stillinger-Weber parametrization, mechanical properties, and thermal conductivity,” Journal of Applied Physics. 2013. link Times cited: 303 Abstract: We present a parameterization of the Stillinger-Weber potent… read moreAbstract: We present a parameterization of the Stillinger-Weber potential to describe the interatomic interactions within single-layer MoS2 (SLMoS2). The potential parameters are fitted to an experimentally obtained phonon spectrum, and the resulting empirical potential provides a good description for the energy gap and the crossover in the phonon spectrum. Using this potential, we perform classical molecular dynamics simulations to study chirality, size, and strain effects on the Young's modulus and the thermal conductivity of SLMoS2. We demonstrate the importance of the free edges on the mechanical and thermal properties of SLMoS2 nanoribbons. Specifically, while edge effects are found to reduce the Young's modulus of SLMoS2 nanoribbons, the free edges also reduce the thermal stability of SLMoS2 nanoribbons, which may induce melting well below the bulk melt temperature. Finally, uniaxial strain is found to efficiently manipulate the thermal conductivity of infinite, periodic SLMoS2. read less USED (low confidence) J. Wallace, D. Chen, J. Wang, and L. Shao, “Molecular dynamics simulation of damage cascade creation in SiC composites containing SiC/graphite interface,” Nuclear Instruments & Methods in Physics Research Section B-beam Interactions With Materials and Atoms. 2013. link Times cited: 8 USED (low confidence) L. Zhang, H. Zhao, Z. Ma, H. Huang, C. Geng, and Z. Ma, “A Study on Size Effect of Indenter in Nanoindentation via Molecular Dynamics Simulation,” Key Engineering Materials. 2013. link Times cited: 5 Abstract: A series of three-dimensional molecular dynamics (MD) simula… read moreAbstract: A series of three-dimensional molecular dynamics (MD) simulations of nanoindentation are conducted to investigate the deformation behavior and phase transformation of monocrystalline silicon with different size hemispherical diamond indenters on (010) crystal plane. The technique of coordination number (CN) is employed to elucidate the detailed mechanism of phase transformation in the monocrystalline silicon. The simulation results show that the phase transformation varies according to the different radii indenters. In the phase transformation region beneath the indenter, the crystalline structures of Si-II, Si-XIII, and amorphous phase structures are observed. In addition, the results indicate that phase transformation with large indenters is not same with the small indenter. The six-coordinated silicon phase, Si-XIII, transformed from Si-I is identified. The phases of Si-II and Si-XIII, which have the same coordinate number, are successfully extracted from the transformation region during nanoindentation and amorphous phase will emerge upon unloading. read less USED (low confidence) R. Ansari and S. Sahmani, “Prediction of biaxial buckling behavior of single-layered graphene sheets based on nonlocal plate models and molecular dynamics simulations,” Applied Mathematical Modelling. 2013. link Times cited: 143 USED (low confidence) M. Backman et al., “Molecular dynamics simulations of swift heavy ion induced defect recovery in SiC,” Computational Materials Science. 2013. link Times cited: 77 USED (low confidence) X. J. Yang, S. Zhan, and Y. Chi, “Molecular Dynamics Simulation of Nanoscale Sliding Friction Process between Sphere and Plane,” Applied Mechanics and Materials. 2012. link Times cited: 2 Abstract: Contact surface of nanoscale sliding friction represent some… read moreAbstract: Contact surface of nanoscale sliding friction represent some new features that are different from the macro scale sliding friction, which need to seek new analysis methods. Molecular dynamics simulation is an effective method to describe microscopic phenomena. Therefore, Molecular dynamics method was used to study mechanical behavior of contact surface of nanoscale sliding friction. A molecular dynamics model of hemisphere sphere sliding on rectangular solid plane was built. State change of the micro contact area and friction force variation in the process of sliding friction were observed and analyzed after solution and simulation. The results show that, at the beginning position of the sliding, with different contact depth, contact action region of hemisphere and plane generated the atoms displacement, re-arranged and close-packed accumulation is also different. The deeper the contact depth is, the greater the atoms close-packed accumulation is, and the greater the contact deformation is. In the process of sliding friction, the contact surface of the basal body has produced lattice destruction, surface upheaval and silicon atoms close-packed accumulation, and then formed furrow scratches. At the same time the silicon atoms of the hemisphere generated atomic migration obviously and adhered on the basal body surface. The top of the hemisphere was torn and peeled, which resulted in wear. The deeper contact depth is, the more loss of the material of the hemisphere is, and wear become heavier. The curve of friction force and sliding displacement in different contact depths shows that the deeper contact depth is, the greater friction force is. The friction force increases quickly at the beginning of the sliding. Then the friction force remains steady relatively at stable sliding phase. In subsequent sliding process, due to hemisphere was worn and the original contact surface changed in size, shape and configuration state, friction force decreases obviously. Besides, in process of sliding friction, due to stick-slip effect, friction force appears obviously fluctuations. Moreover, if the sliding speed is large the changes of sliding speed have less effect on friction force when the nanoscale sphere sliding on the plane at the different speeds. read less USED (low confidence) K. Farah, M. Langeloth, M. Böhm, and F. Müller-Plathe, “Surface-Induced Interphases During Curing Processes Between Bi- and Pentafunctional Components: Reactive Coarse-Grained Molecular Dynamics Simulations,” The Journal of Adhesion. 2012. link Times cited: 7 Abstract: The present reactive molecular dynamics (RMD) simulations di… read moreAbstract: The present reactive molecular dynamics (RMD) simulations discuss the formation of interphase regions in cured polymer adhesives. The latter are obtained from the curing of reactive liquid mixtures composed of pentafunctional linkers and bifunctional monomers in contact with idealized surfaces. The present reactive scheme mimics the one of epoxies with amine linkers, i.e., processes investigated experimentally by Possart and co-workers. Generic RMD simulations are performed in a coarse-grained (CG) resolution to evaluate basic principles in curing characterized by preferential interactions. The creation of linker-rich domains is promoted by preferential surface-linker as well as linker-linker interactions in the reactive mixtures. The dimension of the interphase both in the starting mixture and the cured network depends on these preferential interactions which lead to a retardation of the curing velocity. This retardation behavior is mapped by conversion curves as a function of the number of reactive steps and by the spatially resolved profiles of the connected linkers. Although derived by generic potentials, the simulated reduction of the curing velocity is in agreement with experimental results in epoxies. The chosen interactions also imply a smaller number of linker bonds in the interphase than in the bulk region. The present RMD approach offers insight into key parameters of curing processes under the influence of preferential surface interactions coupled to selective attractions in the liquid starting mixture. read less USED (low confidence) Y.-bo Guo and Y. Liang, “Atomistic simulation of thermal effects and defect structures during nanomachining of copper,” Transactions of Nonferrous Metals Society of China. 2012. link Times cited: 17 USED (low confidence) X. Lu, M. Chen, D. Qiu, L. Fan, C. Wang, and H. Wang, “Dynamics behavior and defects evolution of silicon nitride nanowires under tension and compression load: A molecular dynamics study,” Computational Materials Science. 2012. link Times cited: 19 USED (low confidence) Z. Wang, Y. Liang, and J. X. Chen, “Adhesion of Silicon to the Tool during Diamond Cutting Silicon by Molecular Dynamics,” Key Engineering Materials. 2012. link Times cited: 0 Abstract: Wear of diamond tool is also very serious, which affects the… read moreAbstract: Wear of diamond tool is also very serious, which affects the surface quality of the machined work material, even if ductile mode where an undeformed chip thickness is at a nanoscale is used. During the cutting process, the crystal structure in the cutting zone is destroyed under the high pressures applied by the diamond tool. The silicon atoms adhering to the tool surface reconstruct to be in a crystal state under the effect of adhesion and pressures. read less USED (low confidence) Y. Tian, R. Wei, W. Gao, V. Eichhorn, S. Fatikow, and D. Zhang, “Tensile and compressive behaviour of silicon carbide nanocones with 120° disclination,” Micro & Nano Letters. 2012. link Times cited: 1 Abstract: The tensile and compressive behaviour of silicon carbide nan… read moreAbstract: The tensile and compressive behaviour of silicon carbide nanocones (SiCNCs) under axial strain has been investigated using classic molecular dynamics simulations. For the tensile behaviour, the influences of the cone height on the failure strain, and failure force as well as failure strain energy have been systematically explored. Both the failure strain and the strain energy of SiCNCs are found to decrease with the increasing cone height. However, the failure force is marginally affected by the cone height. For the compressive behaviour of the SiCNCs, the deformation patterns in the buckling and postbuckling stages are extensively examined. The influences of the cone height on compressive behaviour have been explored. It is noted that the increased cone height has significant effect on the critical strain, and critical force as well as critical strain energy per atom of SiCNCs. read less USED (low confidence) N. A. Katcho et al., “Diffraction Anomalous Fine Structure study and atomistic simulation of Ge/Si nanoislands,” Nuclear Instruments & Methods in Physics Research Section B-beam Interactions With Materials and Atoms. 2012. link Times cited: 2 USED (low confidence) D. Huang, J. Pu, Z. Lu, and Q. Xue, “Microstructure and surface roughness of graphite‐like carbon films deposited on silicon substrate by molecular dynamic simulation,” Surface and Interface Analysis. 2012. link Times cited: 14 Abstract: Molecular dynamics simulations are performed on the atomic o… read moreAbstract: Molecular dynamics simulations are performed on the atomic origin of the growth process of graphite‐like carbon film on silicon substrate. The microstructure, mass density, and internal stress of as‐deposited films are investigated systematically. A strong energy dependence of microstructure and stress is revealed by varying the impact energy of the incident atoms (in the range 1–120 eV). As the impact energy is increased, the film internal stress converts from tensile stress to compressive stress, which is in agreement with the experimental results, and the bonding of C‐Si in the film is also increased for more substrate atoms are sputtered into the grown film. At the incident energy 40 eV, a densification of the deposited material is observed and the properties such as density, sp3 fraction, and compressive stress all reach their maximums. In addition, the effect of impact energy on the surface roughness is also studied. The surface morphology of the film exhibits different characteristics with different incident energy. When the energy is low (<40 eV), the surface roughness is reduced with the increasing of incident energy, and it reaches the minimum at 50 eV. Copyright © 2012 John Wiley & Sons, Ltd. read less USED (low confidence) S. Goel, X. Luo, and R. Reuben, “Shear instability of nanocrystalline silicon carbide during nanometric cutting,” Applied Physics Letters. 2012. link Times cited: 74 Abstract: The shear instability of the nanoscrystalline 3C-SiC during … read moreAbstract: The shear instability of the nanoscrystalline 3C-SiC during nanometric cutting at a cutting speed of 100 m/s has been investigated using molecular dynamics simulation. The deviatoric stress in the cutting zone was found to cause sp3-sp2 disorder resulting in the local formation of SiC-graphene and Herzfeld-Mott transitions of 3C-SiC at much lower transition pressures than that required under pure compression. Besides explaining the ductility of SiC at 1500 K, this is a promising phenomenon in general nanoscale engineering of SiC. It shows that modifying the tetrahedral bonding of 3C-SiC, which would otherwise require sophisticated pressure cells, can be achieved more easily by introducing non-hydrostatic stress conditions. read less USED (low confidence) N. Liao, W. Xue, and M. Zhang, “Effect of carbon content on structural and mechanical properties of SiCN by atomistic simulations,” Journal of The European Ceramic Society. 2012. link Times cited: 31 USED (low confidence) N. Liao, G. Ma, M. Zhang, and W. Xue, “Effects of SiC particles on mechanical properties of SiCN-based composite by atomistic simulation,” Composites Part B-engineering. 2012. link Times cited: 5 USED (low confidence) W. Huang, W. Ge, C. Li, C. Hou, X. Wang, and X. He, “Atomic and electronic structures of Si[001] (130) symmetric tilt grain boundaries based on first-principles calculations,” Computational Materials Science. 2012. link Times cited: 12 USED (low confidence) P.-H. Huang, “Atomistic simulations of shearing friction and dynamic adhesion of double-walled carbon nanotubes on Au substrates,” Composites Science and Technology. 2012. link Times cited: 19 USED (low confidence) F. Hao, D. Fang, and Z. Xu, “Thermal transport in crystalline Si/Ge nano-composites: Atomistic simulations and microscopic models,” Applied Physics Letters. 2012. link Times cited: 24 Abstract: Thermal transport in Si/Ge nano-composites, consisting of cr… read moreAbstract: Thermal transport in Si/Ge nano-composites, consisting of crystalline silicon as matrix and aligned germanium nanowires as inclusions, is investigated here through non-equilibrium and equilibrium molecular dynamics (MD) simulations. Our results show increasing of temperature gradient at the interface between silicon and germanium, which is limited in an interfacial phase of few lattices. A thermal boundary phase is included explicitly in our three-phase model, in companion with the modified effective medium theory, to be compared with MD simulation results with various nanowire concentrations. The results suggest that the presence of nanowires leads to a dramatic decrease of κ for heat transfer across nanowires arising from interfacial phase, while along the interfaces, the reduction of phonon mean free path due to interfacial scattering lowers κ of silicon matrix and germanium nanowires. read less USED (low confidence) D. Konatham, D. Papavassiliou, and A. Striolo, “Thermal boundary resistance at the graphene–graphene interface estimated by molecular dynamics simulations,” Chemical Physics Letters. 2012. link Times cited: 58 USED (low confidence) S. A. Mollick, S. Karmakar, A. Metya, and D. Ghose, “Pit formation on the Ge (1 0 0) surfaces by normal incident Si− ion implantation,” Applied Surface Science. 2012. link Times cited: 10 USED (low confidence) Z. Sha, P. S. Branicio, V. Sorkin, Q. Pei, and Y.-W. Zhang, “Effects of grain size and temperature on mechanical and failure properties of ultrananocrystalline diamond,” Diamond and Related Materials. 2011. link Times cited: 27 USED (low confidence) Z. Zhu, M. Liu, and X. Zhou, “A Study on Nanocutting of Monocrystalline Silicon by Molecular Dynamics Simulation,” Applied Mechanics and Materials. 2011. link Times cited: 2 Abstract: Three dimensional molecular dynamics simulation on the nanoc… read moreAbstract: Three dimensional molecular dynamics simulation on the nanocutting of monocrystalline silicon is carried out to investigate the material deformation behaviors and atomic motion characteristics of the machined workpiece. A deformation criterion is developed to determine the material deformation and phase transformation behavior in the subsurface layer based on the single-atom potential energy variations. The results show that the machined chips suffer a complex phase transformation and eventually present an amorphous structure caused by the plastic deformation behavior. A polycrystalline structure is obtained on the machined surface. Both plastic and elastic deformation simultaneously takes place on the machined surface, and elastic deformation takes place under the machined surface. In order to further unveil the mechanism of nanocutting process, the displacements of all atoms are also simulated. The simulation results shows that different atomic motions occur in different regions in the workpiece, and the chips formations occur via extrusion. read less USED (low confidence) Y. Umeno, Y. Shiihara, and N. Yoshikawa, “Ideal shear strength under compression and tension in C, Si, Ge, and cubic SiC: an ab initio density functional theory study,” Journal of Physics: Condensed Matter. 2011. link Times cited: 20 Abstract: Ideal shear strength under superimposed normal stress of cub… read moreAbstract: Ideal shear strength under superimposed normal stress of cubic covalent crystals (C, Si, Ge, and SiC) is evaluated by ab initio density functional theory calculation. Shear directions in [ ] and [ ] on the (111) plane are examined. The critical shear stress along the former direction is lower than that along the latter in all the crystals unless the hydrostatic tension is extremely high. In both the [ ]-shear and [ ]-shear, critical shear stress is increased by compression in C but is decreased in the other crystals. The different response of the critical shear stress to normal stress is due to the strength of the bond-order term, i.e. dependence of the short-range interatomic attraction on the bond-angle. read less USED (low confidence) X. W. Zhou, F. Doty, and P. Yang, “Atomistic simulation study of atomic size effects on B1 (NaCl), B2 (CsCl), and B3 (zinc-blende) crystal stability of binary ionic compounds,” Computational Materials Science. 2011. link Times cited: 15 USED (low confidence) M. Malik, T. Shi, Z. Tang, and P. Peng, “Al-Film/Si-Substrate System Nanoscratching Response Based upon Molecular Dynamics Simulation in NEMS,” Defect and Diffusion Forum. 2011. link Times cited: 0 Abstract: A growing scientific effort is being devoted to the study of… read moreAbstract: A growing scientific effort is being devoted to the study of nanoscale interface aspects such as thin-film adhesion, abrasive wear and nanofriction at surfaces by using the nanoscratching technique but there remain immense challenges. In this paper, a three-dimensional (3D) model is suggested for the molecular dynamics (MD) simulation and experimental verification of nanoscratching initiated from nano-indentation, carried out using atomic force microscope (AFM) indenters on Al-film/Si-substrate systems. Hybrid potentials such as Morse and Tersoff, and embedded atom methods (EAM) are taken into account together for the first time in this MD simulation (for three scratching conditions: e.g. orientation, depth and speed, and the relationship between forces and related parameters) in order to determine the mechanisms of nanoscratching phenomena. Salient features such as nanoscratching velocity, direction and depth - as well as indenter shape- and size-dependent functions such as scratch hardness, wear and coefficient of friction - are also examined. A remarkable conclusion is that the coefficient of friction clearly depends upon the tool rake-angle and therefore increases sharply for a large negative angle. read less USED (low confidence) Y.-R. Chen, M. Jeng, Y. Chou, and C. Yang, “Molecular dynamics simulation of the thermal conductivities of Si nanowires with various roughnesses,” Computational Materials Science. 2011. link Times cited: 14 USED (low confidence) M. Itoh, T. Uda, J. Nara, and T. Ohno, “Atomistic Simulation of SiC Growth at the SiC(0001)/Si1-XCx Interface by the Monte Carlo Method,” Materials Science Forum. 2011. link Times cited: 0 Abstract: We developed the computer simulation method to study growth … read moreAbstract: We developed the computer simulation method to study growth of SiC at the SiC(0001)/Si1-xCx interface based on the Monte Carlo method. Energy is calculated by using the Tersoff potential and the lattice spacing is sub-divided to enable the structural relaxation in a dicrete manner. Before making an attempt for the atomic difusion via the species exchange process in the Metropolis alogrithm, local relaxation is carried out to locate atoms at the local minima of the potential surface. Then, parallel computation is carried out to thermally equilibrate a system. read less USED (low confidence) H. Lan and Z. Kang, “Molecular Dynamics Simulations of Structures of Amorphous Carbon Films via Deposition,” Advanced Materials Research. 2011. link Times cited: 1 Abstract: The growth of amorphous carbon films via deposition is inves… read moreAbstract: The growth of amorphous carbon films via deposition is investigated using molecular dynamics simulation with a modified Tersoff potential. The impact energy of carbon atoms ranges from 1 to 50 eV and the temperature of the diamond substrate is 300 K. The effects of the incident energy on the growth dynamics and film structure are studied in a detail. Simulation results show that the mobility of surface atoms in the cascade region is enhanced by impacting energetic carbon ions, especially at moderate energy, which favors the growth of denser and smoother films with better adhesion to the substrate. Our results agree qualitatively with the experimental observation. read less USED (low confidence) S.-K. Chien, Y.-T. Yang, and C.-K. Chen, “Thermal conductivity and thermal rectification in carbon nanotubes with geometric variations of doped nitrogen: Non-equilibrium molecular dynamics simulations,” Physics Letters A. 2010. link Times cited: 30 USED (low confidence) P. Peng, G. Liao, T. Shi, Z. Tang, and Y. Gao, “Molecular dynamic simulations of nanoindentation in aluminum thin film on silicon substrate,” Applied Surface Science. 2010. link Times cited: 97 USED (low confidence) Z. Wang, Y. Liang, M. Chen, Z. Tong, and J. Chen, “Analysis about diamond tool wear in nano-metric cutting of single crystal silicon using molecular dynamics method,” International Symposium on Advanced Optical Manufacturing and Testing Technologies (AOMATT). 2010. link Times cited: 15 Abstract: Tool wear not only changes its geometry accuracy and integri… read moreAbstract: Tool wear not only changes its geometry accuracy and integrity, but also decrease machining precision and surface integrity of workpiece that affect using performance and service life of workpiece in ultra-precision machining. Scholars made a lot of experimental researches and stimulant analyses, but there is a great difference on the wear mechanism, especially on the nano-scale wear mechanism. In this paper, the three-dimensional simulation model is built to simulate nano-metric cutting of a single crystal silicon with a non-rigid right-angle diamond tool with 0 rake angle and 0 clearance angle by the molecular dynamics (MD) simulation approach, which is used to investigate the diamond tool wear during the nano-metric cutting process. A Tersoff potential is employed for the interaction between carbon-carbon atoms, silicon-silicon atoms and carbon-silicon atoms. The tool gets the high alternating shear stress, the tool wear firstly presents at the cutting edge where intension is low. At the corner the tool is splitted along the {1 1 1} crystal plane, which forms the tipping. The wear at the flank face is the structure transformation of diamond that the diamond structure transforms into the sheet graphite structure. Owing to the tool wear the cutting force increases. read less USED (low confidence) A.-P. Prskalo, S. Schmauder, C. Ziebert, J. Ye, and S. Ulrich, “Molecular dynamics simulations of the sputtering of SiC and Si3N4,” Surface & Coatings Technology. 2010. link Times cited: 21 USED (low confidence) A. Setoodeh, M. Jahanshahi, and H. Attariani, “Atomistic simulations of the buckling behavior of perfect and defective silicon carbide nanotubes,” Computational Materials Science. 2009. link Times cited: 34 USED (low confidence) N. A. Katcho et al., “Structural properties of Ge/Si(001) nano-islands and AlGaN nanowires by Diffraction Anomalous Fine Structure and Multiwavelength Anomalous Diffraction.” 2009. link Times cited: 9 Abstract: In this paper, we show that combining Multiwavelength Anomal… read moreAbstract: In this paper, we show that combining Multiwavelength Anomalous Diffraction (MAD) and Diffraction Anomalous Fine Structure (DAFS) spectroscopy, in grazing incidence geometry, allows to obtain structural properties (strain and composition) of semiconductor nanostructures. We report results obtained on dome-shaped Ge nano-islands grown on Si(001) surfaces and AlGaN nanowires grown on Si(100). It is shown that, in the case of sharp interfaces, MAD alone can not determine the mean Ge content in the region of the substrate-island interface and needs to be combined with Extented-DAFS measurements. read less USED (low confidence) S. Satake, S. Yamashina, K. Ando, M. Shibahara, J. Taniguchi, and S. Momota, “Molecular dynamics simulation of nanoindentaiton on ion-induced damage of silicon surface,” Journal of Physics: Conference Series. 2009. link Times cited: 1 Abstract: Nanoindentation on ion-induced damage of silicon surface was… read moreAbstract: Nanoindentation on ion-induced damage of silicon surface was performed using molecular dynamics. The simulation revealed interaction between a ion-induced damage substrate and a indentation. Two types of silicon substrates are used. One is silicon crystal, and another is amorphous silicon which damaged by argon ion bombardment. The initial velocity of the ion bombardment was 3.807×105 m/sec at 30 keV. The computation volume (8.00 nm × 8.00 nm × 17.24 nm) consisted of 57600 Si atoms with Si (100) surface. Each silicon substrate was pressed by the indentation and the force acting on the indentation head were investigated. The force of the ion-induced substrate is smaller than that of the crystalline substrate. Consequently, it turned out that the internal structure of silicon with ion-induced damage can be examined by the force distribution of the indentation. read less USED (low confidence) 陈智辉, 俞重远, 芦鹏飞, and 刘玉敏, “Surface diffusion of Si, Ge and C adatoms on Si (001) substrate studied by the molecular dynamics simulation.” 2009. link Times cited: 5 USED (low confidence) L. Shen and Z. Chen, “Loading History Effect on Size-Dependent Shear Strength of Pure and Nitrogen-Doped Ultrananocrystalline Diamond,” Mechanics of Advanced Materials and Structures. 2009. link Times cited: 6 Abstract: A numerical study is performed to investigate the effect of … read moreAbstract: A numerical study is performed to investigate the effect of loading history on the size-dependent material properties of pure and nitrogen-doped ultrananocrystalline diamond (UNCD) specimens under different shear loading paths. A simple procedure with combined kinetic Monte Carlo and molecular dynamics methods is adopted to form a polycrystalline UNCD with an artificial grain boundary (GB). By randomly adding different numbers of nitrogen atoms into the GBs, the effects of nitrogen doping and GB width on the UNCD responses under pre-compressioned/tensioned shear loading conditions are studied. It appears that the loading history has certain influence on the size-dependent material properties of UNCD, which provides useful information for formulating a multiscale constitutive model with applications to general cases. read less USED (low confidence) S. Satake, S. Yamashina, N. Inoue, T. Kunugi, and M. Shibahara, “Large-scale molecular dynamics simulation of sputtering process with glancing-angle Ar cluster impact on 4H-SiC,” Nuclear Instruments & Methods in Physics Research Section B-beam Interactions With Materials and Atoms. 2009. link Times cited: 0 USED (low confidence) K. D. Krantzman and B. Garrison, “Molecular dynamics simulations to explore the effect of chemical bonding in the keV bombardment of Si with C60, Ne60 and 12Ne60 projectiles,” Nuclear Instruments & Methods in Physics Research Section B-beam Interactions With Materials and Atoms. 2009. link Times cited: 7 USED (low confidence) K. Amara, B. Soudini, D. Rached, and A. Boudali, “Molecular dynamics simulations of the structural, elastic and thermodynamic properties of cubic BBi,” Computational Materials Science. 2008. link Times cited: 16 USED (low confidence) Y. Zhang and H.-C. Huang, “Stability of single-wall silicon carbide nanotubes – molecular dynamics simulations,” Computational Materials Science. 2008. link Times cited: 76 USED (low confidence) J. Kang, Y. G. Choi, J. H. Lee, O. Kwon, and H. Hwang, “Molecular dynamics simulations of carbon nanotube oscillators deformed by encapsulated copper nanowires,” Molecular Simulation. 2008. link Times cited: 17 Abstract: Pure carbon nanotube (CNT) oscillators are compared to the c… read moreAbstract: Pure carbon nanotube (CNT) oscillators are compared to the corresponding CNT oscillators encapsulating copper nanowires (Cu@CNTs) by molecular dynamics simulations. The classical oscillation theory provides a fairly good estimate of the mass dependence of the operating frequency when the CNT surface is not deformed by the Cu nanowire. The structural deformations of the CNT induced by the encapsulated copper nanowire have a greater effect on the oscillation frequency than the mass of the copper nanowire. The excess forces of the Cu@CNT oscillator are slightly higher than those of the CNT oscillator and the excess van der Waals forces induced by the inter-wall interactions are 17 times higher than the excess forces induced by the Cu nanowire–CNT interactions. read less USED (low confidence) L. Liu, S.-yuan Sun, Q. Zhang, and P. Zhai, “The mechanical properties of skutterudite CoAs3 by molecular dynamics (MD) simulation,” Journal of Wuhan University of Technology-Mater. Sci. Ed. 2008. link Times cited: 2 USED (low confidence) X. Han, Y. Hu, and S. Yu, “Molecular dynamics analysis micro-mechanism of ductile machining single crystal silicon by means of nanometric cutting technology,” European Physical Journal-applied Physics. 2008. link Times cited: 6 Abstract: It is difficult for brittle materials to acquire high machin… read moreAbstract: It is difficult for brittle materials to acquire high machined surface quality as they have low fracture strength. But in the case of nanometric cutting technology, nanometer level machined surface is often acquired by means of ductile material remove mode. In order to investigate physical essence of ductile machining process, this paper carries out molecular dynamics (MD) analysis of nanometric cutting single crystal silicon. The result shows that huge hydrostatic pressure induced in the local area which lead to the silicon atom transform from classical diamond structure ( α silicon) to metal structure ( β silicon). At the same time, the stress concentration is avoided by uniformly distributed pressure in the cutting area. These two important factors together result in the ductile machining of silicon and then acquire super-smooth surface. read less USED (low confidence) M. Makeev and D. Srivastava, “Hypersonic velocity impact on a-SiC target: A diagram of damage characteristics via molecular dynamics simulations,” Applied Physics Letters. 2008. link Times cited: 10 Abstract: Dynamic damage response characteristics of an amorphous sili… read moreAbstract: Dynamic damage response characteristics of an amorphous silicon carbide target due to hypersonic velocity impacts of diamond projectiles are investigated using molecular dynamics simulations. In a certain range of radii of the projectile, four distinct regimes of damage are uncovered and summarized in a penetration depth diagram. The regimes correspond to shallow crater formation, deep penetration into the target, deep penetration with local melting of the target, and complete disintegration of the projectile. In the third regime, a logarithmic dependence of the penetration depth as a function of the projectile velocity has been found and explained by an analytical model. read less USED (low confidence) P. Agrawal, B. S. Sudalayandi, L. Raff, and R. Komanduri, “Molecular dynamics (MD) simulations of the dependence of C–C bond lengths and bond angles on the tensile strain in single-wall carbon nanotubes (SWCNT),” Computational Materials Science. 2008. link Times cited: 33 USED (low confidence) M. Cai, X. P. Li, and M. Rahman, “Study of the temperature and stress in nanoscale ductile mode cutting of silicon using molecular dynamics simulation,” Journal of Materials Processing Technology. 2007. link Times cited: 94 USED (low confidence) L. Pizzagalli and G. Lucas, “First-Principles Simulations of Frenkel Pair Formation and Annealing in Irradiated ß-SiC,” Solid State Phenomena. 2007. link Times cited: 0 Abstract: Using first principles molecular dynamics and Nudged Elastic… read moreAbstract: Using first principles molecular dynamics and Nudged Elastic Band calculations, we have investigated the effect of irradiation on cubic silicon carbide at the atomic scale, and in particular the formation of Frenkel pairs, and the crystal recovery after thermal treatment. Threshold displacement energies have been determined for C and Si sublattice, and the stability and structure of the formed Frenkel pairs are described. The activation energies for annealing these defects have then been computed and compared with experiments. read less USED (low confidence) F. Gou, M. Gleeson, and A. Kleyn, “Molecular dynamics simulation of CH3 interaction with Si(100) surface,” Surface Science. 2007. link Times cited: 3 USED (low confidence) M. Cai, X. Li, and M. Rahman, “Characteristics of ‘dynamic hard particles’ in nanoscale ductile mode cutting of monocrystalline silicon with diamond tools in relation to tool groove wear,” Wear. 2007. link Times cited: 55 USED (low confidence) L. Giannuzzi and B. Garrison, “Molecular dynamics simulations of 30 and 2 keV Ga in Si,” Journal of Vacuum Science and Technology. 2007. link Times cited: 8 Abstract: Focused Ga+ ion beams are routinely used at high incident an… read moreAbstract: Focused Ga+ ion beams are routinely used at high incident angles for specimen preparation. Molecular dynamics simulations of 2 and 30keV Ga bombardment of Si(011) at a grazing angle of 88° were conducted to assess sputtering characteristics and damage depth. The bombardment of atomically flat surfaces and surfaces with vacancies shows little energy transfer yielding ion reflection. The bombardment of surfaces with adatoms allows for the coupling of the energy of motion parallel to the surface into the substrate resulting in sputtering. The adatom and one other Si atom eject, and motion in the substrate occurs down to a depth of 13A. Experimental evidence shows that sputtering is a reality, suggesting that an atomically flat surface is never achieved. read less USED (low confidence) S. Hai-yang and Z. Xin-wei, “Si-coated single-walled carbon nanotubes under axial loads: An atomistic simulation study,” Physica B-condensed Matter. 2007. link Times cited: 14 USED (low confidence) V. Tomar, “Multiscale Simulation of Dynamic Fracture in Polycrystalline SiC-Si 3N4 Using a Molecularly Motivated Cohesive Finite Element Method.” 2007. link Times cited: 0 Abstract: An advanced nanocomposite microstructure such as that of pol… read moreAbstract: An advanced nanocomposite microstructure such as that of polycrystalline Silicon Carbide (SiC)-Silicon Nitride (Si3N4) nanocomposites contains multiple lengthscales with grain boundary (GB) thickness of the order of 50 nm, SiC particle sizes of the order of 200300 nm and Si3N4 grain sizes of the order of 0.8 to 1.5 μm. Recent developments in failure analyses of such materials focus on continuum calculations with an account of the corresponding atomistic deformation mechanisms. In the presented research one such analysis approach is applied to analyze continuum level deformation in polycrystalline SiCSi3N4 nanocomposites. The continuum bilinear cohesive law is motivated from the atomistic SiC-Si3N4 interfacial separation analyses. The cohesive finite element method (CFEM) based analyses of dynamic fracture at a loading rate of 2 m/sec in bi-modal SiC-Si3N4 nanocomposites with an explicit account of the multiple length scales associated with GBs, second phase (SiC particles), and the primary phase (Si3N4 matrix) are performed. For CFEM analyses bimodal polycrystalline SiC-Si3N4 nanocomposite structures are generated with grain sizes of Si3N4 in the range of 0.8 to 1.5 μm and SiC particle size varying between 200 nm and 300 nm. The volume fraction of the SiC phase is fixed at 30%. In order to analyze the effect of GBs each sample of SiC-Si3N4 nanocomposite has two corresponding meshes: one with finite element (FE) mesh resolving GBs and the other with FE mesh neglecting GBs. Since, a given unique set of phase morphology defining parameters (such as location of SiC particles, SiC or GB distribution etc.) corresponds to a multiple sets of morphologies, three different random sets of morphologies are used to characterize the material behavior corresponding to one unique set of phase morphology parameters. Analyses clearly show that the GBs have a strong effect on dynamic fracture in the nanocomposites. read less USED (low confidence) C. Liu, T. Fang, and J. Lin, “Atomistic simulations of hard and soft films under nanoindentation,” Materials Science and Engineering A-structural Materials Properties Microstructure and Processing. 2007. link Times cited: 76 USED (low confidence) S. Satake, N. Inoue, T. Kunugi, M. Shibahara, and H. Kasahara, “Large-scale molecular dynamics simulation for two Ar clusters impact on 4H–SiC,” Nuclear Instruments & Methods in Physics Research Section B-beam Interactions With Materials and Atoms. 2007. link Times cited: 9 USED (low confidence) B.-M. Lee, T. Kuranaga, S. Munetoh, and T. Motooka, “Surface nucleation of the (111) plane of excimer laser annealed Si on SiO2 substrates: A molecular dynamics study,” Journal of Applied Physics. 2007. link Times cited: 12 Abstract: We have investigated the nucleation and crystallization proc… read moreAbstract: We have investigated the nucleation and crystallization processes of molten silicon (Si) on SiO2 substrates by performing molecular dynamics (MD) simulations based on the modified Tersoff potential parameters. A heat flow that leads to a steady fall of the local temperature in the molten Si is achieved by determining the atomic movements with the combination of Langevin and Newton equations. Good agreement is reached between the predictions of temperatures based on the kinetic energies and the velocity distributions of atoms at local regions. The results of simulations revealed that the (111) plane of the Si nuclei formed at the surface was predominantly parallel to the substrate of MD cell. The surface energies of the (100), (110), and (111) planes of Si at 77 K were calculated to be 2.27, 1.52, and 1.20 J∕m2, respectively, and they were in good agreement with the experimental results. The lowest value of surface energy, 1.20 J∕m2, for the (111) plane at 1700 K was obtained under the condition of elastic... read less USED (low confidence) M. Cai, X. Li, M. Rahman, and A. Tay, “Crack initiation in relation to the tool edge radius and cutting conditions in nanoscale cutting of silicon,” International Journal of Machine Tools & Manufacture. 2007. link Times cited: 64 USED (low confidence) V. Ivashchenko, P. Turchi, and V. Shevchenko, “Simulations of the mechanical properties of crystalline, nanocrystalline, and amorphous SiC and Si,” Physical Review B. 2007. link Times cited: 84 Abstract: Molecular-dynamics simulations of crystalline (c), nanocryst… read moreAbstract: Molecular-dynamics simulations of crystalline (c), nanocrystalline (nc), and amorphous (a) silicon carbides and silicon were carried out to investigate their vibrational and mechanical properties. The atomic configurations, vibrational spectra, and stress-strain curves were calculated at room temperature. In the case of the nanocrystalline structures, these characteristics were analyzed as functions of grain size. Young's and bulk modul and yield and flow stresses were determined from uniaxial deformation of samples under periodic boundary constraints and from experiments on rod extension. For silicon carbides, Young's modulus and flow stress decrease in the sequence ``c-nc-a,'' and with decreasing grain size, which is attributed to a weakening of the Si--C bonds in the amorphous matrix. The enhancement of the strength properties of the homopolar nc--Si structures is attributed to their deformation anisotropy. The calculated vibrational spectra and Young's moduli are in rather good agreement with the corresponding experimental characteristics. read less USED (low confidence) C. Retford, M. Asta, M. Miksis, P. Voorhees, and E. Webb, “Energetics of 105-faceted Ge nanowires on Si(001) : An atomistic calculation of edge contributions,” Physical Review B. 2007. link Times cited: 21 Abstract: Heteroepitaxial growth in the $\mathrm{Ge}∕\mathrm{Si}$ (001… read moreAbstract: Heteroepitaxial growth in the $\mathrm{Ge}∕\mathrm{Si}$ (001) system is known to lead to the formation of pyramid-like ``hut'' islands with {105}-oriented facets. Recent calculations of island formation energies in this system have suggested that edge energies lead to an important contribution to the barrier to island formation at small sizes. Here we provide an independent calculation of the magnitude of the average edge energy for $\mathrm{Ge}∕\mathrm{Si}(001)$ by matching the results of atomistic simulations to continuum theory for the energy of faceted surfaces. We consider an infinitely long Ge island, or wire, bounded by {105} facets with the recently proposed rebonded-step-model reconstruction, on a (001) wetting-layer terrace with the $2\ifmmode\times\else\texttimes\fi{}8$ dimer-vacancy-line reconstruction. To perform these calculations we derive models for edge structures between {105} facets and between {105} and (001) facets, leading in both cases to atomic coordinations with no more than one dangling bond per atom. For these model edge structures we obtain an average value for the edge energy on the order of $10\phantom{\rule{0.3em}{0ex}}\mathrm{meV}∕\mathrm{\AA{}}$. read less USED (low confidence) M. Cai, X. Li, and M. Rahman, “Molecular dynamics modelling and simulation of nanoscale ductile cutting of silicon,” Int. J. Comput. Appl. Technol. 2007. link Times cited: 22 Abstract: A simulation system for nanoscale ductile mode cutting of mo… read moreAbstract: A simulation system for nanoscale ductile mode cutting of monocrystalline silicon has been developed in thi study using the Molecular Dynamics (MD) method for better understanding of the ductile mode cutting mechanism. In the model of this simulation system, the initial atom positions of silicon workpiece material are arranged according to the crystal lattice structure, the atomic interactive actions of silicon are based on the Tersoff potential, the diamond cutting tool is assumed to be undeformable, the tool cutting edge is realistically modelled to have a finite radius, and the motions of the atoms in the chip formation zone are determined by Newton's equations of motion. The simulated variation of the cutting forces with the tool cutting edge radius is compared with the results of experimental cutting tests to substantiate the developed simulation system and the results show a good agreement with analytical findings. read less USED (low confidence) F. de Brito Mota and C. D. de Castilho, “Carbon nanotube adsorbed on a hydrogenated Si-rich β − Si C ( 100 ) ( 3 × 2 ) surface: First-principles pseudopotential calculations,” Physical Review B. 2006. link Times cited: 8 Abstract: Single wall carbon nanotubes (SWCN's) have attracted sc… read moreAbstract: Single wall carbon nanotubes (SWCN's) have attracted scientific interest as a result of their remarkable mechanical and electrical properties. Metallic SWCN's can carry electrical current due to $\ensuremath{\pi}$ electrons propagating along their graphitelike surface. This work theoretically considers the effects resulting from the possibility of connecting nanotubes to a partially hydrogenated Si-rich $\ensuremath{\beta}\text{\ensuremath{-}}\mathrm{Si}\mathrm{C}(100)$ $(3\ifmmode\times\else\texttimes\fi{}2)$ surface. This is done with the perspective that they can improve the metallic character of the surface. Calculations were performed using a first-principles pseudopotential methodology within the density-functional theory and local-density approximation. Results indicates the formation of a covalent bond between nanotube carbon atoms and surface silicon atoms. The structural and electronic properties of this theoretical system are presented and comparison with previous calculations for related systems is also done. read less USED (low confidence) P. Sonnet, L. Stauffer, E. M. Tammar, and P. Kelires, “Stress modifications induced by dimer vacancies in the Si(0 0 1) surface: Monte Carlo simulations,” Surface Science. 2006. link Times cited: 0 USED (low confidence) H. Wu, F. Fang, and Q. Pei, “STUDY ON NANOMETRIC CUTTING MECHANISM AND BURR FORMATION USING MOLECULAR DYNAMICS SIMULATION,” International Journal of Nanoscience. 2006. link Times cited: 2 Abstract: Since no physical approach can be employed to study the mech… read moreAbstract: Since no physical approach can be employed to study the mechanism in micro cutting, the molecular dynamics simulation is becoming more and more important. In this study, the results of molecular dynamics modeling and analysis on the nanometric machining on silicon surface are presented. According to the simulation, some phenomena in the nanometric cutting process are found. First, surface elastic rebound happens on the cut surface after cutter moving away. The value of the surface elastic rebound is calculated in the simulation. Second, the atoms near the corner of work piece swirl up following the cutter moving direction at the initial stage of removing atoms from the work piece. Third, the simulation results show that no matter how small material removal is, the burr is always formed at the edge of work piece. read less USED (low confidence) K. Moriguchi and M. Igarashi, “Correlation between lattice-strain energetics and melting properties: Molecular dynamics and lattice dynamics using EAM models of Al,” Physical Review B. 2006. link Times cited: 14 USED (low confidence) M. Posselt, F. Gao, and W. J. Weber, “Atomistic simulations on the thermal stability of the antisite pair in 3C- and 4H-SiC,” Physical Review B. 2006. link Times cited: 16 Abstract: The thermal stability of the first-neighbor antisite pair co… read moreAbstract: The thermal stability of the first-neighbor antisite pair configurations in 3C- and 4H-SiC is investigated by a comprehensive atomistic study. At first the structure and energetics of these defects is determined in order to check the accuracy of the Gao-Weber interatomic potential used. The results are comparable with literature data obtained by the density-functional theory. Then, the lifetime of the antisite pair configurations is calculated for temperatures between 800 and 2500 K. Both in 3C- and 4H-SiC the thermal stability of the antisite pairs is rather low. In contrast to previous theoretical interpretations, the antisite pair can be therefore not correlated with the DI photoluminescence center that is stable to above 2000 K. The atomic mechanisms during the recombination of the antisite pair in 3C-SiC and of three antisite pair configurations in 4H-SiC is a modified concerted exchange. Due to the different sizes of the silicon and the carbon atoms, this process is not identical with the concerted exchange in Si. Two intermediate metastable configurations found during the recombination are similar to the bond defect in Si. Since the SiC lattice contains two types of atoms, there are also two different types of bond defects. The two bond defects canmore » be considered as the result of the incomplete recombination of a carbon vacancy and a neighboring mixed dumbbell interstitial. For selected temperatures the thermal stability of the antisite pair in 3C-SiC is investigated by molecular dynamics simulations that are based on the density-functional theory. Their results are very similar to those of the atomistic study, i.e. the Gao-Weber potential describes the antisite pair and its recombination reasonably well. The antisite pair in 4H-SiC with the two atoms on hexagonal sites has a slightly different formation energy than the other three antisite pair configurations in 4H-SiC. Its lifetime shows another dependence on the temperature, and its recombination is characterized by a separate motion of atoms.« less read less USED (low confidence) A. Noreyan and J. Amar, “Molecular dynamics simulations of nanoscratching of 3C SiC,” Wear. 2006. link Times cited: 53 USED (low confidence) W. C. D. Cheong and L. Zhang, “Molecular Dynamics Simulation of Nano-Indentation of Carbon Coated Monocrystalline Silicon,” Key Engineering Materials. 2006. link Times cited: 0 Abstract: This paper presents the molecular dynamics (MD) simulation o… read moreAbstract: This paper presents the molecular dynamics (MD) simulation of nano-indentation of diamond-like carbon (DLC) coating on silicon substrates. It is found that the mechanisms of nanoindentation of coated systems on the nanometre scale defers considerably from the same process on the micrometre scale. The coating thickness affects the mechanisms of plastic deformation both in the coating and the substrate. read less USED (low confidence) K. Nishio, T. Morishita, W. Shinoda, and M. Mikami, “Molecular dynamics simulation of icosahedral Si quantum dot formation from liquid droplets,” Physical Review B. 2005. link Times cited: 15 Abstract: The present paper reports on molecular dynamics simulations … read moreAbstract: The present paper reports on molecular dynamics simulations of the formation process of Si quantum dots (Si QDs). Icosahedral Si QDs are formed spontaneously by freezing 274-, 280-, and 323-atom Si droplets. We find that the initialization of pentagonal channels leads into the overall icosahedral structure. We also study the melting behavior of the 280-atom icosahedral Si QD. We find that the melting point is reduced more than 15% compared with that of bulk Si. A possible approach to synthesize icosahedral Si QDs is discussed. The formation of the icosahedral structure could be expected in other systems characterized by tetrahedral bonding network. read less USED (low confidence) H. Kikuchi, R. Kalia, A. Nakano, P. Vashishta, P. S. Branicio, and F. Shimojo, “Brittle dynamic fracture of crystalline cubic silicon carbide ‘3C-SiC… via molecular dynamics simulation,” Journal of Applied Physics. 2005. link Times cited: 96 Abstract: Brittle fracture dynamics for three low-index crack surfaces… read moreAbstract: Brittle fracture dynamics for three low-index crack surfaces, i.e., (110), (111), and (100), in crystalline cubic silicon carbide (3C-SiC) is studied using molecular dynamics simulation. The results exhibit significant orientation dependence: (110) fracture propagates in a cleavage manner; (111) fracture involves slip in the {111¯} planes; and crack branching is observed in (001) fracture. Calculated critical energy release rates, which characterize fracture toughness, are compared with available experimental and ab initio calculation data. read less USED (low confidence) S. Cereda, F. Montalenti, and L. Miglio, “Atomistic modeling of step formation and step bunching at the Ge(105) surface,” Surface Science. 2005. link Times cited: 15 USED (low confidence) X. Hu, Y. Dai, H. Shen, and X. He, “A molecular dynamics simulation on the structural properties of B and N co-existed in diamond,” Physica B-condensed Matter. 2005. link Times cited: 3 USED (low confidence) B. Zheng et al., “Growth of tetrahedral amorphous carbon film: Tight-binding molecular dynamics study,” Carbon. 2005. link Times cited: 28 USED (low confidence) A. Schmidt et al., “Growth of three-dimensional SiC clusters on Si modelled by KMC,” Computational Materials Science. 2005. link Times cited: 17 USED (low confidence) A. Noreyan, J. Amar, and I. Marinescu, “Molecular dynamics simulations of nanoindentation of β-SiC with diamond indenter,” Materials Science and Engineering B-advanced Functional Solid-state Materials. 2005. link Times cited: 56 USED (low confidence) Z. Li et al., “Investigation of ion-beam-assisted deposition of DLC films by molecular dynamics simulation,” Surface & Coatings Technology. 2005. link Times cited: 6 USED (low confidence) H. Wu, B. Lin, S. Y. Yu, and H.-tao Zhu, “Molecular Dynamics Simulation on the Mechanism of Nanometric Machining of Single-Crystal Silicon,” Materials Science Forum. 2004. link Times cited: 2 Abstract: Molecular dynamics (MD) simulation can play a significant ro… read moreAbstract: Molecular dynamics (MD) simulation can play a significant role in addressing a number of machining problems at the atomic scale. This simulation, unlike other simulation techniques, can provide new data and insights on nanometric machining; which cannot be obtained readily in any other theory or experiment. In this paper, some fundamental problems of mechanism are investigated in the nanometric cutting with the aid of molecular dynamics simulation, and the single-crystal silicon is chosen as the material. The study showed that the purely elastic deformation took place in a very narrow range in the initial stage of process of nanometric cutting. Shortly after that, dislocation appeared. And then, amorphous silicon came into being under high hydrostatic pressure. Significant change of volume of silicon specimen is observed, and it is considered that the change occur attribute to phase transition from a diamond silicon to a body-centered tetragonal silicon. The study also indicated that the temperature distributing of silicon in nanometric machining exhibited similarity to conventional machining. read less USED (low confidence) S. Goumri‐Said, M. Kanoun, A. Merad, G. Merad, and H. Aourag, “Prediction of structural and thermodynamic properties of zinc-blende AlN: molecular dynamics simulation,” Chemical Physics. 2004. link Times cited: 49 USED (low confidence) H. Tanaka, S. Shimada, and N. Ikawa, “Brittle-ductile transition in monocrystalline silicon analysed by molecular dynamics simulation,” Proceedings of the Institution of Mechanical Engineers, Part C: Journal of Mechanical Engineering Science. 2004. link Times cited: 31 Abstract: For a better understanding of essential mechanisms of materi… read moreAbstract: For a better understanding of essential mechanisms of material removal at extremely small depth of cut and of the brittle-ductile transition in the material removal process of monocrystalline silicon, nonometric deformation behaviour in three-point bending of defect-free monocrystalline silicon is analysed by molecular dynamics (MD) computer simulation. MD simulations show that plastic deformation takes place through a phase transformation from diamond to amorphous structures. The critical octahedral shearing stress for phase transformation is estimated to be 12–14 GPa. In the deformed region, a crack nucleus on atomic scale can be generated owing to thermally activated vibration of atoms. After the crack nucleus, the crack extension takes place under a certain stress field. The crack initition takes place when a tensile stress reaches a certain critical value of about 30 GPa at the crack nucleus. The critical values for plastic deformation and crack initiation depend on crystal orientation and hydrostatic pressure. It is shown that there can also be critical criteria of the stress field to determine whether plastic deformation or crack initiation would predomiantly take place. When the plastic deformation proceeds to a crack initiation, ductile mode machining can be realized. read less USED (low confidence) F. Te‐Hua, J. Sheng-Rui, and C. der-San, “Molecular Dynamics for Elastic and Plastic Deformation of a Single-Walled Carbon Nanotube Under Nanoindentation,” Chinese Physics Letters. 2004. link Times cited: 6 Abstract: Mechanical characteristics of a suspended (10,10) single-wal… read moreAbstract: Mechanical characteristics of a suspended (10,10) single-walled carbon nanotube (SWCNT) during atomic force microscopy (AFM) nanoindentation are investigated at different temperatures by molecular dynamics simulations. The results indicate that the Young modulus of the (10,10) SWCNT under temperatures of 300?600?K is 1.2?1.3?TPa. As the temperature increases, the Young modulus of the SWCNT increases, but the axial strain of the SWCNT decreases. The strain-induced spontaneous formation of the Stone?Wales defects and the rippled behaviour under inhomogeneous stress are studied. The rippled behaviour of the SWCNT is enhanced with the increasing axial strain. The adhesive phenomenon between the probe and the nanotube and the elastic recovery of the nanotube during the retraction are also investigated. read less USED (low confidence) H. Tanaka, M. Sano, and S. Shimada, “Brittle-Ductile Transition in Nano Bending of Monocrystalline Silicon Carbide Analyzed by Molecular Dynamics Simulation,” Key Engineering Materials. 2004. link Times cited: 3 Abstract: For better understanding of the essential mechanisms of mate… read moreAbstract: For better understanding of the essential mechanisms of material removal at extremely small depth of cut and ductile-brittle transition in material removal process of monocrystalline silicon carbide, which is expected as a next generation semiconductor material for wide band gap, high-voltage and low-loss power devices, nanometric deformation behavior in three-point bending of defect-free monocrystalline silicon carbide is analyzed by molecular dynamics (MD) computer simulation. The MD simulation results show that plastic deformation takes place through a phase transformation from cubic zinc sulfide to amorphous structures. The critical octahedral shearing stress for phase transformation is estimated to be 24 to 38 GPa. In the deformed region, a crack nucleus in atomic scale can be generated due to thermally activated vibration of atoms. After the crack nucleus, the crack extension takes place under certain stress field. The crack initiation takes place when a tensile stress reaches a certain critical value of approximately 67 GPa at the crack nucleus. The critical values for plastic deformation and crack initiation depend on crystal orientation and hydrostatic pressure. The results also show that there can be a number of critical criteria of the stress field to determine which processes plastic deformation or crack initiation predominantly takes place. When the plastic deformation proceeds to a crack initiation, ductile mode machining can be realized. Introduction There are increasing demands for ductile mode machining of brittle materials, especially of industrial key materials such as silicon and silicon carbide, with higher form accuracy and better surface quality together with lower costs. On the other hand, it is empirically well known that chip is removed in ductile mode under the depth of cut smaller than a critical value intrinsic to the work material. To realize ductile mode machining on any brittle material, it is essential to understand mechanisms of material removal at extremely small depth of cut. In general, brittle fracture takes place by extension of pre-existing micro-cracks. It depends on balance of two different energy states associated with crack extension and local plastic deformation whether brittle fracture or plastic deformation takes place. The former is the excess surface energy for extension of pre-existing crack, the latter the energy for local plastic deformation of corresponding site. However, mechanisms of ductile-brittle transition of defect-free monocrystalline silicon carbide have not been fully understood. Diamond indenter (Rigid) Loading (V=50m/s) Thermostat atoms (293 K) Periodic boundary SiC (100) read less USED (low confidence) N. Resta, C. Kohler, and H. Trebin, “Molecular Dynamics Simulations of Amorphous Si–C–N Ceramics: Composition Dependence of the Atomic Structure,” Journal of the American Ceramic Society. 2003. link Times cited: 39 Abstract: We have performed classical molecular dynamics simulations o… read moreAbstract: We have performed classical molecular dynamics simulations of amorphous Si–C–N materials. The dependence of the local order and of the microstructure on the chemical composition was investigated. Our simulations show that for a stoichiometric nitrogen/silicon ratio equal to or higher than 4/3, the amorphous ceramic separates into different amorphous domains, namely C-rich, SiN-rich, and SiC-rich phases. Below this ratio, the material is composed of mixed structures, homogeneously spread within the material. For a very particular composition range, we found that carbon atoms crystallize into monoatomic graphitic layers surrounding the SiN-rich domains. read less USED (low confidence) K. Nishihira and T. Motooka, “Molecular-dynamics simulations of crystal growth from melted Si: Self-interstitial formation and migration,” Physical Review B. 2002. link Times cited: 22 Abstract: Molecular-dynamics simulations of crystal growth from melted… read moreAbstract: Molecular-dynamics simulations of crystal growth from melted Si have been performed using the Tersoff potential to analyze the defect formation and migration processes. We observed that a five-membered ring generated at the solid/liquid interface initiated self-interstitial defect formation. The formation and migration energies of the obtained defect were calculated to be 3.85 and 0.94 eV, respectively. The sum of the calculated formation and migration energies, 4.79 eV, is in good agreement with the experimental activation energy of self-diffusion in crystal Si. read less USED (low confidence) C. Kohler, “Atomistic Modelling of Structures of Tilt Grain Boundaries and Antiphase Boundaries in β‐Silicon Carbide,” Physica Status Solidi B-basic Solid State Physics. 2002. link Times cited: 21 Abstract: Structures of symmetrical tilt grain boundaries and antiphas… read moreAbstract: Structures of symmetrical tilt grain boundaries and antiphase boundaries in β-silicon carbide are investigated by means of classical molecular dynamics simulations using the Tersoff potential. A structural unit model is used to classify the possible interface structures. Structures and energies are given for 〈001〉 tilt grain boundaries in the angular range 0° ≤ θ ≤ 53.15° and for 〈110〉 tilt grain boundaries in the range 0° ≤ θ ≤ 70.53° of tilt angles. It is found that among 〈110〉 boundaries, those containing antiphase boundaries are the most stable ones in an intermediate angular range. read less USED (low confidence) X. Han, B. Lin, S. Yu, and S. X. Wang, “Investigation of tool geometry in nanometric cutting by molecular dynamics simulation,” Journal of Materials Processing Technology. 2002. link Times cited: 67 USED (low confidence) J. Cai, J. Cai, and J.-S. Wang, “Friction between Si tip and (001)-2×1 surface: A molecular dynamics simulation,” Computer Physics Communications. 2002. link Times cited: 3 USED (low confidence) F. Rosei and P. Raiteri, “Stress induced surface melting during the growth of the Ge wetting layer on Si(0 0 1) and Si(1 1 1),” Applied Surface Science. 2002. link Times cited: 18 USED (low confidence) S. Chitra and K. Ramachandran, “MONTE CARLO SIMULATION USING JOHNSON POTENTIAL ON Gd Mg ALLOY FOR DEBYE WALLER FACTOR AND DEBYE TEMPERATURE,” International Journal of Modern Physics C. 2002. link Times cited: 2 Abstract: Monte Carlo simulation (MCS) on the thermal properties in Gd… read moreAbstract: Monte Carlo simulation (MCS) on the thermal properties in Gd–Mg alloy becomes essential as there are only limited experiments available. A realistic Johnson potential is used to workout the specific heats for various temperatures and hence the Debye temperature. The results from the present simulation technique are very well compared with our shell model calculation. The need of better X-ray measurements for Debye–Waller factor and Debye temperature other than the measurements of Subadhra and Sirdeshmukh, is discussed in detail. read less USED (low confidence) J. Nord, K. Nordlund, and J. Keinonen, “Molecular dynamics simulation of ion-beam-amorphization of Si, Ge and GaAs,” Nuclear Instruments & Methods in Physics Research Section B-beam Interactions With Materials and Atoms. 2002. link Times cited: 24 USED (low confidence) Y. Wei, T. Xiao-yun, L. Xiaowei, and F. Guang-sheng, “Process of Energetic Carbon Atom Deposition on Si (001) Substrate by Molecular Dynamics Simulation,” Chinese Physics Letters. 2002. link Times cited: 4 Abstract: The process of energetic C atom deposition on Si (001)-(2×1)… read moreAbstract: The process of energetic C atom deposition on Si (001)-(2×1) is studied by the molecular dynamics method using the semi-empirical many-bond Tersoff potential. It is found that the incident energy of the carbon atom has an important effect on the collision process and its diffusion process on the substrate. Most of the incident energy of the carbon atom is transferred to the substrate atoms within the initial two vibration periods of substrate atoms and its value increases with the incident energy. The spreading distance and penetration depth of the incident atom increasing with the incident energy are also identified. The simulated results imply that an important effect of energy of incident carbon on the film growth at low substrate temperature provides activation energy for silicon carbide formation through the vibration enhancement of local substrate atoms. In addition, suppressing carbon atom inhomogeneous collection and dispensing with the silicon diffusion process may be effectively promoted by the spreading and penetration of the energetic carbon atom in the silicon substrate. read less USED (low confidence) P. Raiteri, F. Valentinotti, and L. Miglio, “Stress, strain and elastic energy at nanometric Ge dots on Si(0 0 1),” Applied Surface Science. 2002. link Times cited: 10 USED (low confidence) U. Wad, A. V. Limaye, and S. Ogale, “Monte Carlo simulated annealing study of mixed Si–Ge and C–C dimer adsorption on a Si (001) 2×1 surface,” Solid State Communications. 2002. link Times cited: 0 USED (low confidence) P. Raiteri, M. Celino, F. Valentinotti, and L. Miglio, “2D versus 3D competition at the early stages of growth for Ge on Si(001) by molecular dynamics,” Materials Science and Engineering B-advanced Functional Solid-state Materials. 2002. link Times cited: 1 USED (low confidence) C. Koitzsch, D. Conrad, K. Scheerschmidt, F. Scharmann, P. Maslarski, and J. Pezoldt, “Carbon-induced reconstructions on si(111) investigated by RHEED and molecular dynamics,” Applied Surface Science. 2001. link Times cited: 7 USED (low confidence) L. Malerba and J. Perlado, “Molecular dynamics simulation of irradiation-induced amorphization of cubic silicon carbide,” Journal of Nuclear Materials. 2001. link Times cited: 45 USED (low confidence) L. Malerba, J. Perlado, A. Sánchez-Rubio, I. Pastor, L. Colombo, and T. D. Rubia, “Molecular dynamics simulation of defect production in irradiated β-SiC,” Journal of Nuclear Materials. 2000. link Times cited: 13 USED (low confidence) F. Benkabou, H. Aourag, and M. Certier, “Atomistic study of zinc-blende CdS, CdSe, ZnS, and ZnSe from molecular dynamics,” Materials Chemistry and Physics. 2000. link Times cited: 80 USED (low confidence) Z. Pan, Z. Pan, W. J. Zhu, Z. Man, Y. Xu, and Y. Ho, “Investigation of low-energy carbon cluster depositions on surfaces by a molecular dynamics simulation,” Surface & Coatings Technology. 2000. link Times cited: 2 USED (low confidence) C. Abrams and D. Graves, “On the active surface layer in CF3+ etching of Si: Atomistic simulation and a simple mass balance model,” Journal of Vacuum Science and Technology. 2000. link Times cited: 25 Abstract: Molecular dynamics (MD) simulations of CF3+ ion bombardment … read moreAbstract: Molecular dynamics (MD) simulations of CF3+ ion bombardment of Si predict the formation of a steady-state fluorocarbosilyl mixing layer that actively participates in the etching of the underlying Si. The active nature of this mixing layer has been characterized by computing atomic residence time distributions (RTDs) for adsorbed fluorine and carbon. The average residence time of carbon in the layers is seen to increase dramatically as ion energy increases, while that of fluorine is not sensitive to ion energy. The overall RTDs compare well with those of an ideal stirred tank. A simple “well-mixed” transient mass balance model is presented. The phenomenology of this model is based on interpretations of the MD results. The model correctly predicts the evolution of atomic concentrations in the mixing layer. Both the MD and model results shed new light on how CF3+ ions etch Si. read less USED (low confidence) K. Nishihira, S. Munetoh, and T. Motooka, “Uniaxial strain observed in solid/liquid interface during crystal growth from melted Si: A molecular dynamics study,” Journal of Crystal Growth. 2000. link Times cited: 1 USED (low confidence) M. Nakamura, H. Fujioka, K. Ono, M. Takeuchi, T. Mitsui, and M. Oshima, “Molecular dynamics simulation of III–V compound semiconductor growth with MBE,” Journal of Crystal Growth. 2000. link Times cited: 36 USED (low confidence) H. Ichikawa, R. Sahara, H. Mizuseki, K. Ohno, and Y. Kawazoe, “Monte Carlo Simulation of Cu–Au Alloys on FCC Lattice with a Renormalized Potential,” Materials Transactions Jim. 1999. link Times cited: 4 Abstract: Monte Carlo simulation of an FCC lattice-gas model is carrie… read moreAbstract: Monte Carlo simulation of an FCC lattice-gas model is carried out to study order-disorder phase transitions. To study an actual Cu-Au alloys as quantitatively as possible, a Finnis-Sinclair-type potential, which has been used widely for molecular dynamics (MD) simulations, is mapped onto the FCC model by using the potential renormalization technique proposed by one of us. Using this renormalized potential, we find that the linear expansion coefficient of Cu and Au crystals and the transition temperatures are greatly improved when compared with the case of using the MD potential directly on the lattice. read less USED (low confidence) J. Oh and C. Grein, “Epitaxial growth simulations of CdTe(1 1 1)B on Si(0 0 1),” Journal of Crystal Growth. 1998. link Times cited: 15 USED (low confidence) L. Zhang and H. Tanaka, “Atomic scale deformation in silicon monocrystals induced by two-body and three-body contact sliding,” Tribology International. 1998. link Times cited: 191 USED (low confidence) W. Sekkal, H. Aourag, and M. Certier, “Molecular dynamics simulation of high pressure phases of CuCl and CuBr,” Journal of Physics and Chemistry of Solids. 1998. link Times cited: 29 USED (low confidence) H. Rafii-Tabar, H. Kamiyama, and M. Cross, “Molecular dynamics simulation of adsorption of Ag particles on a graphite substrate,” Surface Science. 1997. link Times cited: 35 USED (low confidence) K. Beardmore and R. Smith, “C60 film growth and the interaction of fullerenes with bare and H terminated Si surfaces, studied by molecular dynamics,” Nuclear Instruments & Methods in Physics Research Section B-beam Interactions With Materials and Atoms. 1995. link Times cited: 12 USED (low confidence) H. Yan, A. P. Smith, and H. Jónsson, “Atomic structure of β-SiC(100) surfaces: an ab initio study,” Surface Science. 1995. link Times cited: 48 USED (low confidence) M. Tang and S. Yip, “Lattice instability in β‐SiC and simulation of brittle fracture,” Journal of Applied Physics. 1994. link Times cited: 47 Abstract: Brittle fracture of β‐SiC (polytype 3C) under hydrostatic te… read moreAbstract: Brittle fracture of β‐SiC (polytype 3C) under hydrostatic tension has been modeled by molecular dynamics simulation using an interatomic potential function that treats the solid as fully covalent. The critical stress at which the lattice becomes structurally unstable is shown to agree quantitatively with that predicted by stability analysis based on elastic stiffness coefficients. The instability mode is the spinodal (vanishing of bulk modulus), and decohesion occurs as spontaneous nucleation of cracking on {111} shuffle planes. Atomic relaxation on the newly generated cracked surfaces appears to take place immediately following crack opening. read less USED (low confidence) M. Kitabatake, M. Deguchi, and T. Hirao, “Simulations and experiments of SiC heteroepitaxial growth on Si(001) surface,” Journal of Applied Physics. 1993. link Times cited: 69 Abstract: Mechanism of SiC heteroepitaxial growth by the carbonization… read moreAbstract: Mechanism of SiC heteroepitaxial growth by the carbonization of the Si(001) surface was studied at the atomic scale using molecular dynamics (MD) simulations and molecular beam epitaxy (MBE) experiments. Heteroepitaxial growth of single crystal 3c‐SiC on the Si(001) surface (3c‐SiC[001]∥Si[001] and 3c‐SiC[110]∥Si[110]) was observed in both the MD simulations and MBE experiments. Breaking of the Si—Si bonds and shrinkage of the [110] Si rows with C atoms are possible mechanisms for the heteroepitaxial growth of SiC on Si(001). Microscopic structures and mechanisms of the twin formations and pit formations are discussed. Ultraviolet light irradiation is proposed and confirmed to enhance the epitaxial growth of SiC in the MBE experiments. read less USED (low confidence) Y. Kawazoe, Y. Maruyama, H. Rafii-Tabar, M. Ikeda, H. Kamiyama, and K. Ohno, “Structure of layered C60 on Si(100) surface studied by ab initio and classical molecular dynamics simulations,” Materials Science and Engineering B-advanced Functional Solid-state Materials. 1993. link Times cited: 5 USED (low confidence) T. Halicioǧlu, “Carbon atoms on the (2 × 1) reconstructed Si(100) surface,” Surface Science. 1993. link Times cited: 4 USED (low confidence) P. Weakliem and E. Carter, “Constant temperature molecular dynamics simulations of Si(100) and Ge(100): Equilibrium structure and short‐time behavior,” Journal of Chemical Physics. 1992. link Times cited: 37 Abstract: The structures of the (100) surfaces of silicon and germaniu… read moreAbstract: The structures of the (100) surfaces of silicon and germanium generally have been interpreted in a static manner in the past. We present molecular dynamics (MD) simulations that show these surfaces to consist of a mixture of rapidly interconverting buckled and unbuckled dimers. Over a time average, the surface is found to have long p(2×1) rows of symmetric, unbuckled dimers, as seen in recent scanning tunneling microscopy images of silicon. However, higher order unit cells are observed in He scattering and low energy electron diffraction experiments at low temperatures. We present a dynamical interpretation of the structure to explain both sets of observations. The simulations have been performed on different size slabs at both constant energy and constant temperature utilizing a new method for effective removal of heat from an exothermic system while retaining the correct dynamics. Several different interaction potentials were analyzed in an attempt to find the most realistic one for simulations of these surfaces. The effect of surface defects and annealing were also investigated. The surface phonon densities of states were calculated and for Si(100) are in good agreement with experiments and other theoretical treatments. Such simulations and structural analyses are reported for the first time for Ge(100). read less USED (low confidence) P. Zhao, B. Zhao, J. Pan, and J. Wu, “Nano-grinding process of single-crystal silicon using molecular dynamics simulation: Nano-grinding parameters effect,” Materials Science in Semiconductor Processing. 2022. link Times cited: 12 USED (low confidence) L. Xue et al., “Study of deformation mechanism of structural anisotropy in 4H–SiC film by nanoindentation,” Materials Science in Semiconductor Processing. 2022. link Times cited: 5 USED (low confidence) Y. Yan, Z. Li, J. Jia, J. Wang, and Y. Geng, “Molecular dynamics simulation of the combination effect of the tip inclination and scratching direction on nanomachining of single crystal silicon,” Computational Materials Science. 2021. link Times cited: 12 USED (low confidence) “Molecular Dynamics Simulation of Metal Matrix Composites Using BIOVIA Materials Studio, LAMMPS, and GROMACS,” Molecular Dynamics Simulation of Nanocomposites Using BIOVIA Materials Studio, Lammps and Gromacs. 2019. link Times cited: 0 USED (low confidence) H. Dai, S. Li, and G. Chen, “Comparison of subsurface damages on mono-crystalline silicon between traditional nanoscale machining and laser-assisted nanoscale machining via molecular dynamics simulation,” Nuclear Instruments & Methods in Physics Research Section B-beam Interactions With Materials and Atoms. 2018. link Times cited: 46 USED (low confidence) J. Baimova, L. Rysaeva, and A. Rudskoy, “Deformation behavior of diamond-like phases: Molecular dynamics simulation,” Diamond and Related Materials. 2018. link Times cited: 25 USED (low confidence) L. Cui, Y. Feng, J.-kun Tang, P. Tan, and X. Zhang, “Heat conduction in coaxial nanocables of Au nanowire core and carbon nanotube shell: A molecular dynamics simulation,” International Journal of Thermal Sciences. 2016. link Times cited: 19 USED (low confidence) R. Ansari, S. Rouhi, and S. Ajori, “Elastic properties and large deformation of two-dimensional silicene nanosheets using molecular dynamics,” Superlattices and Microstructures. 2014. link Times cited: 45 USED (low confidence) T. Zushi, K. Shimura, M. Tomita, K. Ohmori, K. Yamada, and T. Watanabe, “Phonon dispersion in (100) Si nanowire covered with SiO2 film calculated by molecular dynamics simulation,” ECS Journal of Solid State Science and Technology. 2014. link Times cited: 6 USED (low confidence) Y.-ping Xiao, T. Motooka, R. Teranishi, and S. Munetoh, “Nucleation of Si and Ge by rapid cooling using molecular-dynamics simulation,” Journal of Crystal Growth. 2013. link Times cited: 7 USED (low confidence) C. Yang, Z. Chen, L. Li, W. Li, J. Hu, and S. Lin, “The 4:5 Si-to-SiC atomic lattice matching interfaces in the system of Si(111) heteroepitaxially grown on 6H-SiC(001) substrates,” Solid State Communications. 2012. link Times cited: 7 USED (low confidence) S. Irle et al., “Atomistic Mechanism of Carbon Nanostructure Self-Assembly as Predicted by Nonequilibrium QM/MD Simulations.” 2012. link Times cited: 18 USED (low confidence) J. Fang and L. Pilon, “Thermal Conductivity of Crystalline Nanoporous Silicon Using Molecular Dynamics Simulations.” 2011. link Times cited: 0 Abstract: This study establishes that the effective thermal conductivi… read moreAbstract: This study establishes that the effective thermal conductivity keff of crystalline nanoporous silicon is strongly affected not only by the porosity fv and the system’s length Lz but also by the pore interfacial area concentration Ai . The thermal conductivity of crystalline nanoporous silicon was predicted using non-equilibrium molecular dynamics (NEMD) simulations. The Stillinger-Weber potential for silicon was used to simulate the interatomic interactions. Spherical pores organized in a simple cubic lattice were introduced in a crystalline silicon matrix by removing atoms within selected regions of the simulation cell. Effects of the (i) system length ranging from 13 to 130 nm, (ii) pore diameter varying between 1.74 and 5.86 nm, and (iii) porosity ranging from 8% to 38%, on thermal conductivity were investigated. A physics-based model was also developed by combining kinetic theory and the coherent potential approximation. The effective thermal conductivity was proportional to (1 –1.5 fv ) and inversely proportional to the sum (Ai /4 +1 /Lz ). This model was in excellent agreement with the thermal conductivity of nanoporous silicon predicted by MD simulations for spherical pores (present study) as well as for cylindrical pores and vacancy defects reported in the literature. These results will be useful in designing nanostructured materials with desired thermal conductivity by tuning their morphology.Copyright © 2011 by ASME read less USED (low confidence) T. Inamura, Y. Shishikura, and N. Takezawa, “Mechanism of ring crack initiation in Hertz indentation of monocrystalline silicon analyzed by controlled molecular dynamics,” Cirp Annals-manufacturing Technology. 2010. link Times cited: 5 USED (low confidence) Y. Shishikura, N. Takezawa, and T. Inamura, “Analysis of Ring-Crack Initiation in Hertz Indentation of Monocrystalline Si Using Analytical Solution Controlled-MD,” Journal of The Japan Society for Precision Engineering. 2010. link Times cited: 0 Abstract: In order to study an unknown mechanism of defect initiation … read moreAbstract: In order to study an unknown mechanism of defect initiation in Hertz indentation of monocrystalline silicon with no preexisting defect, analytical solution controlled-MD simulation proposed by the authors has been carried out using an MD model embedded on the surface of silicon. It has been shown that a defect that will become a ring crack can be generated just outside the outer periphery of the contact area between the silicon and indenter. The mechanism of the defect initiation is that the dynamic force associating with acoustic waves transforms monocrystal structure to polycrystal one at the outer periphery of the contact area and this phase change under a macroscopic/static tensile stress acting there triggers cross slips which result in micro-void defects. read less USED (low confidence) M. Cai, X. Li, and M. Rahman, “Study of the mechanism of nanoscale ductile mode cutting of silicon using molecular dynamics simulation,” International Journal of Machine Tools & Manufacture. 2007. link Times cited: 155 USED (low confidence) S. Munetoh, T. Mitani, T. Kuranaga, and T. Motooka, “Nucleation process during exclmer laser annealing of amorphous silicon thin films on glass: A molecular-dynamics study,” MRS Proceedings. 2006. link Times cited: 0 USED (low confidence) G. V. Kornich, G. Betz, V. Zaporojtchenko, K. V. Pugina, and F. Faupel, “Molecular dynamics simulations of interactions of Ar and Xe ions with surface Cu clusters at low impact energies,” Nuclear Instruments & Methods in Physics Research Section B-beam Interactions With Materials and Atoms. 2005. link Times cited: 8 USED (low confidence) G. V. Kornich, G. Betz, V. Zaporojtchenko, A. Bazhin, and F. Faupel, “Molecular dynamics simulations of low energy ion sputtering of copper nano-dimensional clusters on graphite substrates,” Nuclear Instruments & Methods in Physics Research Section B-beam Interactions With Materials and Atoms. 2005. link Times cited: 20 USED (low confidence) M. Yamaguchi, M. Ishimaru, and Y. Hirotsu, “Atomistic Structures of Amorphous Si1-xGex Alloys: A Molecular-Dynamics Study,” Journal of The Japan Institute of Metals. 2004. link Times cited: 0 Abstract: Although extensive studies have been carried out on structur… read moreAbstract: Although extensive studies have been carried out on structural analyses of amorphous silicon-germanium (a-Si1-xGex) alloys, there are still controversies concerning short-range order in a-Si1-xGex alloys. In this study, we examined amorphous structures of Si1-xGex alloys by molecular-dynamics (MD) simulations using the Tersoff interatomic potential. Amorphous networks were prepared by rapid quenching from liquid Si1-xGex alloys. Computer-generated atomic configurations consisted of tetrahedral networks with complete chemical disorder in the first coordination shell. The bond lengths of Si-Si, Si-Ge and Ge-Ge pairs slightly increased with the Ge composition, and a weaker composition dependence was observed in the bond lengths of Si-Si and Si-Ge pairs than that for Ge-Ge pair. These results were in good agreement with those obtained experimentally, suggesting that the MD calculations based on the Tersoff potential is useful for the structural analysis of a-Si1-xGex alloys. It was confirmed that the Ge-Ge bond length and bond angle surrounding Ge atoms are more distorted. This is attributed to the difference between Si and Ge in the bond-stretching and in the bond-bending forces. read less USED (low confidence) L. Nurminen, F. Tavazza, D. Landau, A. Kuronen, and K. Kaski, “Monte Carlo Simulation of the Surface Structure of Ge on Si(00l).” 2003. link Times cited: 1 USED (low confidence) A. Noreyan, I. Marinescu, and J. Amar, “Molecular Dynamic Simulation of Nanoindentation of Silicon Carbide by Diamond Tip.” 2002. link Times cited: 1 USED (low confidence) B. Park, W. J. Weber, and L. Corrales, “Molecular Dynamics Simulation Study of Threshold Displacements and Defect Formation in Zircon,” Physical Review B. 2001. link Times cited: 37 USED (low confidence) Q. A. Bhatti and C. Matthai, “Critical thickness and growth modes of SiC layers on Si substrates - a molecular dynamics study,” Applied Surface Science. 1998. link Times cited: 2 USED (low confidence) L. J. Lewis and N. Mousseau, “Structural and Electronic Properties of a-Gaas: A Tight-Binding–Molecular-Dynamics–Art Simulation,” MRS Proceedings. 1997. link Times cited: 1 USED (low confidence) Q. A. Bhatti, G. J. Moran, and C. Matthai, “Computer Simulation of Surface Diffusion of Silicon and Carbon Adatoms on SiC(001),” MRS Proceedings. 1996. link Times cited: 2 Abstract: We have performed molecular dynamics simulations of adatom d… read moreAbstract: We have performed molecular dynamics simulations of adatom diffusion on the SiC(001) surface and found that the barriers for carbon adatoms is less than that for silicon adatoms. The diffusion paths were also found to be temperature dependent and at high temperatures the adatom diffusion constant was found to of the order of 10−5 cm2 s−1 read less NOT USED (low confidence) X. Cai, H. Li, T. Ma, and Q. Wang, “Size effect on thermal transport performance of inserted Cu/Cu3Sn bilayer,” International Journal of Heat and Mass Transfer. 2024. link Times cited: 0 NOT USED (low confidence) Y. Ma, H. Song, X. Niu, Y. Chen, and T. Suo, “Effect of fiber roughness on interfacial friction of fiber reinforced ceramic matrix composites,” Ceramics International. 2023. link Times cited: 0 NOT USED (low confidence) P. Yu, M. Zhong, L. Wu, Z. Chen, and S. Lu, “Multi scale simulation of crack propagation in polycrystalline SiC,” Theoretical and Applied Fracture Mechanics. 2023. link Times cited: 0 NOT USED (low confidence) M. Vaezi and H. N. Pishkenari, “Toward steering the motion of surface rolling molecular machines by straining graphene substrate,” Scientific Reports. 2023. link Times cited: 0 NOT USED (low confidence) M. Cao, Z. Chen, L. Lu, S. Chen, Z. Ma, and L. Yang, “Effect of crystal orientation and temperature on the mechanical properties and fracture mechanism of silicon carbide nanowires,” Journal of Nanoparticle Research. 2023. link Times cited: 0 NOT USED (low confidence) N. Piroozan and N. Kumar, “Enabling Performant Thermal Conductivity Modeling with DeePMD and LAMMPS on CPUs,” Proceedings of the SC ’23 Workshops of The International Conference on High Performance Computing, Network, Storage, and Analysis. 2023. link Times cited: 0 Abstract: The limiting factor in the application of high-accuracy ab-i… read moreAbstract: The limiting factor in the application of high-accuracy ab-initio molecular dynamics (AIMD) simulations for large systems has been the associated high computational costs. The ability to retain DFT-level accuracy while alleviating these computational costs has been made possible by the use of machine learning potentials, known as Deep Potential (DP) models, which allow accurate prediction of interatomic force and energy distributions for a system based on AIMD input data. DeePMD-kit is a Python/C++ package which implements this DP series model. It is interfaced with TensorFlow for model training and with LAMMPS when using the model for inference. In this paper, we extend DeePMD to accurately predict the thermal conductivity for crystalline Au and Ag systems of up to 2 million atoms. We demonstrate that both DeePMD training and DeePMD inference with LAMMPS can be run efficiently on CPU-based systems. On a single node of 4th generation Intel® Xeon® Scalable 9480 processors, we are able to train the model in less than 5 minutes1. Using this trained model with LAMMPS on 128 dual-socket nodes with Intel® Xeon® Scalable 8480+ processors, we are able to accurately determine the thermal conductivity of crystalline Au and Ag systems, within 5% of experimental results, in under one hour. 2. read less NOT USED (low confidence) L. Chen and J. Liu, “Effect of vacancy defects on tensile properties of CNTs,” Journal of Nanoparticle Research. 2023. link Times cited: 0 NOT USED (low confidence) H. P. Lal, A. B.R., and D. Ghosh, “Prediction of nonlocal elasticity parameters using high-throughput molecular dynamics simulations and machine learning,” European Journal of Mechanics - A/Solids. 2023. link Times cited: 0 NOT USED (low confidence) V. V. Hoang, T. M. L. Nguyen, and H. T. T. Nguyen, “Formation of 2D silicon-carbide nanoribbons by cooling from the melt and out-of-plane displacements of atoms,” Journal of Nanoparticle Research. 2023. link Times cited: 0 NOT USED (low confidence) G. Liang, B. Xu, and X. Wei, “Collision Cascade in a Silicon-Based Device under Energetic Ar Ions Irradiation,” Coatings. 2023. link Times cited: 0 Abstract: Silicon, as the basic material of biochips and electronic de… read moreAbstract: Silicon, as the basic material of biochips and electronic devices, is often exposed to irradiation environments, and its radiation resistance has attracted much attention in recent decades. We calculated collision cascade in a silicon-based device under energetic Ar ions irradiation by using Monte Carlo and molecular dynamics simulations. The difference in vacancy probability density under different energetic incident ion irradiation is caused by the penetrating power and the straggling power of incident ions. The kinetic energy of an incident ion determines the size of local collision cascade density; a high energy incident ion can induce greater local collision cascade density. The efficiency of transferring energy from incident ions to target electrons at the silicon surface is more than in silicon, and the recoil atoms dissipate most of their energy at the lattice sites where they are stopping. These results provide more insight into the radiation resistance of silicon-based devices. read less NOT USED (low confidence) G. Zhang, S. Dong, X. Wang, and G. Xin, “Thermal transport of graphene-C3B superlattices and van der Waals heterostructures: a molecular dynamics study,” Nanotechnology. 2023. link Times cited: 0 Abstract: Two-dimensional (2D) materials have attracted more and more … read moreAbstract: Two-dimensional (2D) materials have attracted more and more attention due to their excellent properties. In this work, we systematically explore the heat transport properties of Graphene-C3B (GRA-C3B) superlattices and van der Waals (vdW) heterostructures using molecular dynamics method. The effects of interface types and heat flow directions on the in-plane interfacial thermal resistance (ITRip) are analyzed. Obvious thermal rectification is detected in the more energy stable interface, GRA zigzag-C3B zigzag (ZZ) interface, which also has the minimum value of ITRip. The dependence of the superlattices thermal conductivity (k) of the ZZ interface on the period length (l p ) is investigated. The results show that when the l p is 3.5 nm, the k reaches a minimum value of 35.52 W m−1 K−1, indicating a transition stage from coherent phonon transport to incoherent phonon transport. Afterwards, the effects of system size, temperature, coupling strength and vacancy defect on the out-of-plane interfacial thermal resistance (ITRop) are evaluated. With the increase of temperature, coupling strength and vacancy defect, ITRop are found to reduce effectively due to the enhanced Umklapp phonon scattering and increased probability of energy transfer. Phonon density of states and phonon participation ratio is evaluated to reveal phonon behavior during heat transport. This work is expected to provide essential guidance for the thermal management of nanoelectronics based on 2D monolayer GRA and C3B. read less NOT USED (low confidence) H.-A. Yang and B. Cao, “Mode-resolved phonon transmittance using lattice dynamics: Robust algorithm and statistical characteristics,” Journal of Applied Physics. 2023. link Times cited: 0 Abstract: Lattice dynamics (LD) enables the calculation of mode-resolv… read moreAbstract: Lattice dynamics (LD) enables the calculation of mode-resolved transmittance of phonons passing through an interface, which is essential for understanding and controlling the thermal boundary conductance (TBC). However, the original LD method may yield unphysical transmittance over 100% due to the absence of the constraint of energy conservation. Here, we present a robust LD algorithm that utilizes linear algebra transformations and projection gradient descent iterations to ensure energy conservation. Our approach demonstrates consistency with the original LD method on the atomically smooth Si/Ge interface and exhibits robustness on rough Si/Ge interfaces. The evanescent modes and localized effects at the interface are revealed. In addition, bottom-up analysis of the phonon transmittance shows that the anisotropy in the azimuth angle can be ignored, while the dependency on the frequency and polar angle can be decoupled. The decoupled expression reproduces the TBC precisely. This work provides comprehensive insights into the mode-resolved phonon transmittance across interfaces and paves the way for further research into the mechanism of TBC and its relation to atomic structures. read less NOT USED (low confidence) Z. Zhu et al., “Nano-cutting deformation characteristics and atomic-scale behavior of two-phase γ/γ′ nickel-based single crystal superalloy,” Intermetallics. 2023. link Times cited: 1 NOT USED (low confidence) W. Li, X. Hu, G. Long, A. Shang, and B. Guo, “Grain wear properties and grinding performance of porous diamond grinding wheels,” Wear. 2023. link Times cited: 1 NOT USED (low confidence) T. Li, H. Xu, and F. Shang, “A refined numerical simulation approach to assess the neutron irradiation effect on the mechanical behavior of wurtzite GaN,” Computational Materials Science. 2023. link Times cited: 0 NOT USED (low confidence) Z. Yan, J. Zhao, R. Liu, B. Liu, Y.-lin Shao, and M. Liu, “An insight into sintering mechanisms of silicon carbide nanoparticles with additives using MD simulation,” Powder Technology. 2023. link Times cited: 0 NOT USED (low confidence) G. Ge et al., “Silicon phase transitions in nanoindentation: Advanced molecular dynamics simulations with machine learning phase recognition,” Acta Materialia. 2023. link Times cited: 0 NOT USED (low confidence) K. Maebuchi and N. Inui, “Electric current distribution induced by applied magnetic field in a bent graphene nanoribbon cantilever,” Journal of Physics D: Applied Physics. 2023. link Times cited: 0 Abstract: Graphene exhibits diamagnetism, and its origin is the orbita… read moreAbstract: Graphene exhibits diamagnetism, and its origin is the orbital electric currents induced on the surface by an applied magnetic field. The magnetic response of a graphene cantilever in the presence of a magnetic field is mainly determined by the diamagnetic electric current, and spin paramagnetism, which suppresses the diamagnetism. We elucidate the change in the electric current distribution caused by the large bending of the graphene cantilever using the tight-binding model. The electric current almost disappears when the position of the graphene cantilever transitions from perpendicular to parallel to the magnetic field and reverses when the graphene cantilever is folded in half. Furthermore, the temporal change in the magnetic energy of the vibrating graphene cantilever is calculated using the molecular dynamics simulation. The strong dependence of the magnetization of a graphene cantilever on its position relative to the magnetic field can be utilized for actuating and controlling the cantilever. read less NOT USED (low confidence) S. Hosseini, M. Norouzi, and J. Xu, “A Sensitive Strain Sensor Based on Multi-Walled Carbon Nanotubes/Polyaniline/Silicone Rubber Nanocomposite for Human Motion Detection,” Sci. 2023. link Times cited: 0 Abstract: Strain sensors play a pivotal role in quantifying stress and… read moreAbstract: Strain sensors play a pivotal role in quantifying stress and strain across diverse domains, encompassing engineering, industry, and medicine. Their applicability has recently extended into the realm of wearable electronics, enabling real-time monitoring of body movements. However, conventional strain sensors, while extensively employed, grapple with limitations such as diminished sensitivity, suboptimal tensile strength, and susceptibility to environmental factors. In contrast, polymer-based composite strain sensors have gained prominence for their capability to surmount these challenges. The integration of carbon nanotubes (CNTs) as reinforcing agents within the polymer matrix ushers in a transformative era, bolstering mechanical strength, electrical conductivity, and thermal stability. This study comprises three primary components: simulation, synthesis of nanocomposites for strain sensor fabrication, and preparation of a comprehensive measurement set for testing purposes. The fabricated strain sensors, incorporating a robust polymer matrix of polyaniline known for its exceptional conductivity and reinforced with carbon nanotubes as strengthening agents, demonstrate good characteristics, including a high gauge factor, stability, and low hysteresis. Moreover, they exhibit high strain sensitivity and show linearity in resistance changes concerning applied strain. Comparative analysis reveals that the resulting gauge factors for composite strain sensors consisting of carbon nanotubes/polyaniline and carbon nanotubes/polyaniline/silicone rubber are 144.5 and 167.94, respectively. read less NOT USED (low confidence) I. Srivastava, A. Kotia, and S. Ghosh, “Molecular dynamics simulation on engine oil nanolubricant boundary lubrication conditions,” Heat Transfer. 2023. link Times cited: 0 Abstract: The employment of nanoparticle additives in engine oil provi… read moreAbstract: The employment of nanoparticle additives in engine oil provides an effective technique for improvement in engine performance and emission. In this study, graphene, graphene–MWCNT, and graphene–SiO2 hybrid nanoparticles have been dispersed in engine oil (n‐decane) to measure the effects of microscopic characteristics of interfacial layer between the carbon–carbon, carbon–hydrogen, carbon–oxygen, and hydrogen–oxygen molecules under fixed shear rate 600 s−1. The boundary lubrication conditions are depicted with nanoindentation operation, in which interaction between the atoms generates the molecular forces under indentation and scratching operation that provide the nucleation and propagation of dislocation in the planes. The result shows that in an early stage of nanoindentation, plastic deformation occurs in the lubricant substrate around the indenter. Furthermore, forces generated in the z‐direction have a significant effect as compared with the forces x‐ and y‐directions. Nanoindentation results concluded that for graphene–MWCNT/engine oil (n‐decane) nanoparticles, at a volume fraction of 1.8%, the nanoparticles outperformed all other nanolubricants. At a volume fraction of 0.3%, the adhesion between the solid and liquid interface was increased by 2.5% graphene nanolubricant, 4% graphene–MWCNT nanolubricant, and 8% graphene–SiO2 nanolubricant. At 1.8% volume fraction, 240% increase in graphene–MWCNT nanolubricant, 72% increase in graphene nanolubricant, and 20% increase in graphene–SiO2 nanolubricant. This trend indicates that the performance of graphene SiO2 nanolubricants is superior at low‐volume fractions, whereas the performance of graphene nanolubricants and graphene–MWCNT nanolubricants is superior at high‐volume fractions. Also we observed the scratching effect of indenter on nanolubricants. read less NOT USED (low confidence) V. Kuryliuk and V. Shevchenko, “Computational Study of the Thermal Transport Properties of Hollow-Core Si Nanowires,” 2023 IEEE 13th International Conference Nanomaterials: Applications & Properties (NAP). 2023. link Times cited: 0 Abstract: In this paper, we investigate the thermal transport in Si ho… read moreAbstract: In this paper, we investigate the thermal transport in Si hollow-core (tubular) nanowires by using the quasi-harmonic Green-Kubo lattice dynamics formalism. We focus on the effect of a cylindrical cavity on the thermal conductivity of the Si nanowires. We compare the heat transport of the hollow-core structure with that of the solid Si nanowire. Furthermore, the dependence of the thermal conductivity on temperature and cavity radius is evaluated in the nanowire direction. We find that by increasing the cavity radius, the thermal conductivity of the hollow-core nanowires decreases. We explore the effects of hollow-core geometry on the thermal conductivity of silicon nanowires. Our simulation results exhibit that increasing the mean temperature of the nanowire leads to a reduction in the thermal conductivity. Our findings provide insights into the thermal control of silicon-based nanodevices for different applications such as thermoelectric ones. read less NOT USED (low confidence) M. Wang, F. Wang, H. Wang, J. Zhang, X. Zhao, and H. Wu, “Effects of bismuth nanoparticles on the nano-cutting properties of single-crystal iron materials: a molecular dynamics study,” Applied Physics A. 2023. link Times cited: 1 NOT USED (low confidence) Q. Yu et al., “A Status Report on ‘Gold Standard’ Machine-Learned Potentials for Water,” The Journal of Physical Chemistry Letters. 2023. link Times cited: 2 Abstract: Owing to the central importance of water to life as well as … read moreAbstract: Owing to the central importance of water to life as well as its unusual properties, potentials for water have been the subject of extensive research over the past 50 years. Recently, five potentials based on different machine learning approaches have been reported that are at or near the “gold standard” CCSD(T) level of theory. The development of such high-level potentials enables efficient and accurate simulations of water systems using classical and quantum dynamical approaches. This Perspective serves as a status report of these potentials, focusing on their methodology and applications to water systems across different phases. Their performances on the energies of gas phase water clusters, as well as condensed phase structural and dynamical properties, are discussed. read less NOT USED (low confidence) M. Li, X. Guo, R. Kang, D. Guo, and P. Zhou, “Study on the transformation and control mechanism of amorphous damage during the grinding process of monocrystalline silicon considering grain shapes by MD method,” Tribology International. 2023. link Times cited: 4 NOT USED (low confidence) Y. Qu, J. Yuan, N. Deng, W. Hu, S. Wu, and H. Wang, “Effect of the thickness of amorphous silicon intermediate layer on the thermal transport of silicon/diamond interface,” Results in Physics. 2023. link Times cited: 0 NOT USED (low confidence) K. W. Kayang and A. N. Volkov, “Turning nanopowder into nanomaterial: Effect of continuous SiC coating on mechanical properties of Si nanoparticle arrays,” Materialia. 2023. link Times cited: 0 NOT USED (low confidence) M. Ma’zdziarz, “Transferability of interatomic potentials for germanene (2D germanium),” Journal of Applied Physics. 2023. link Times cited: 0 Abstract: The capacities of various interatomic potentials available f… read moreAbstract: The capacities of various interatomic potentials available for elemental germanium, with the scope to choose the potential suitable for the modeling of germanene (2D germanium) allotropes,f were investigated. Structural and mechanical properties of the flat, low-buckled, trigonal dumbbell, and large honeycomb dumbbell single-layer germanium (germanene) phases, were obtained using the density functional theory and molecular statics computations with Tersoff, modified embedded atom method, Stillinger–Weber, environment-dependent interatomic potential, ReaxFF, and machine-learning-based interatomic potentials. A systematic quantitative comparative study and discussion of the findings are given. read less NOT USED (low confidence) J. Chen, B. Hu, and Z.-liang Wang, “Interfacial Thermal Transport of Carbon Nanotube on the Substrate,” International Journal of Thermophysics. 2023. link Times cited: 0 NOT USED (low confidence) J. Lees et al., “Nanoscale Si fishbone structures for manipulating heat transport using phononic resonators for thermoelectric applications,” Physica Scripta. 2023. link Times cited: 0 Abstract: Thermoelectric materials have the potential to convert waste… read moreAbstract: Thermoelectric materials have the potential to convert waste heat into electricity, but their thermoelectric efficiency must be improved before they are effective and economically viable. One promising route to improving thermoelectric efficiency in thin-film thermoelectric materials is to reduce the material’s thermal conductivity through nanopatterning the surface. In this work nanoscale phononic resonators are introduced to the surface, and their potential to reduce thermal conductivity is explored via coupled experimental and theoretical techniques. Atomistic modelling is used to predict the dependence of the thermal conductivity on different design parameters and used to guide the design and fabrication of silicon fishbone nanostructures. The nanostructure design incorporates a variation on design parameters such as barb length, width and spacing along the shaft length to enable correlation with changes in thermal conductivity. The thermal characteristics of the nanostructures are investigated experimentally using the spatial resolution of scanning thermal microscopy to correlate changes in thermal conductivity with the changes in the structure parameters. The method developed uses a microheater to establish a temperature gradient along the structure which will be affected by any local variations in thermal conductivity. The impact on the thermal gradient and consequently on the tip temperature is modelled using finite element computer simulations. Experimental changes as small as 7.5% are shown to be detectable in this way. Despite the experimental technique being shown to be able to detect thermal changes far smaller than those predicted by the modelling, no modifications of the thermal conductivity are detected. It is concluded that in order to realise the effects of phononic resonators to reduce thermal conductivity, that much smaller structures with a greater ratio of resonator to shaft will be needed. read less NOT USED (low confidence) Y. Huang, Y. Zhou, J. Li, and F. Zhu, “Understanding the role of surface mechanical properties in SiC surface machining,” Materials Science in Semiconductor Processing. 2023. link Times cited: 0 NOT USED (low confidence) M. Hou, X. Zhou, Z. Yan, M. Liu, and B. Liu, “Molecular dynamics study of the irradiation damage accumulation in beryllium oxide at different temperatures,” Materialia. 2023. link Times cited: 0 NOT USED (low confidence) Y. Wang, Y. Ma, R. Zheng, L. Li, Y.-L. Chen, and B. Ding, “Microstructure of PyC dominates interfacial shear failure in SiCf/SiC composites: From localized sliding to uniform plasticity,” Composites Part A: Applied Science and Manufacturing. 2023. link Times cited: 1 NOT USED (low confidence) Q. Miao, L.-quan Li, X. Pi, Y. Qiu, and M. Fang, “Rarefied gas–surface interaction under multi-incidence parameter coupling conditions: A molecular dynamics simulation,” Physics of Fluids. 2023. link Times cited: 0 Abstract: An effective gas–surface interaction model is crucial for ac… read moreAbstract: An effective gas–surface interaction model is crucial for accurately predicting the aerodynamic thermal properties of hypersonic vehicles. However, the applicability of classical interface models has been severely challenged under hypersonic conditions since the boundary properties predicted by different gas-surface interaction models vary greatly, which seriously threatens the flight safety. Therefore, in order to accurately describe gas–surface interaction under hypersonic conditions, we analyzed the reflection behavior of the gas on a silicon-based surface through molecular dynamics simulations and presented a modified Maxwell model. Furthermore, the dependence of model parameters on incident energy, angle, and gas type was also obtained. By analyzing gas–surface interaction time and potential well depth, the endogenous mechanism of the accommodation coefficient variation under multi-incidence parameter coupling conditions is revealed. These results not only elucidate the microscopic mechanism of gas–surface interaction but also provide an important basis for establishing accurate boundary conditions for larger-scale simulations. read less NOT USED (low confidence) L. Luo and J. Wu, “Molecular dynamics study on nanoscale scratch characteristics of FeNiCrCoAl high-entropy alloy,” AIP Advances. 2023. link Times cited: 0 Abstract: The preparation process of FeNiCrCoAl high-entropy alloy at … read moreAbstract: The preparation process of FeNiCrCoAl high-entropy alloy at the atomic scale was simulated using molecular dynamics, and its microstructure was analyzed to study its micro-mechanical properties during nanoscale scratching. The simulation results showed that FeNiCrCoAl primarily experienced main frictional forces from the [010] direction and radial frictional forces from the [001] direction during the nanoscale scratching process. All three frictional forces exhibited certain fluctuations, which were partly attributed to the formation of face-centered cubic and hexagonal close-packed atomic structures during frictional wear. In addition, plastic flow was observed continuously within the high-entropy alloy matrix. Furthermore, the effects of temperature and Fe atomic content on the nanoscale scratch characteristics of FeNiCrCoAl high-entropy alloy were investigated. The results indicated that an increase in temperature resulted in a nonlinear decrease in frictional forces and a reduction in the quantity of the two types of phase-transition atomic structures formed. Increasing the Fe atomic content induced lattice distortion effects in the high-entropy alloy, leading to an increase in the potential energy of the matrix and the formation of more phase-transition atomic structures, thus hindering the frictional wear process of FeNiCrCoAl high-entropy alloy. read less NOT USED (low confidence) F. Liu et al., “Interfacial mechanical properties of periodic wrinkled graphene/polyethylene nanocomposite,” Physica Scripta. 2023. link Times cited: 0 Abstract: Molecular dynamics simulations have been performed to invest… read moreAbstract: Molecular dynamics simulations have been performed to investigate the interfacial mechanical properties of periodic wrinkled graphene (GR) with polyethylene (PE) matrix. The influences of amplitude (H), wavelength (λ), and vacancy defect for the periodic wrinkled GR on the interfacial mechanical properties were considered and the potential mechanisms were analyzed. The results indicate that the interfacial mechanical properties of GR with periodic wrinkles are superior to that of flat GR, especially when the H/λ=0.51 the interfacial strength enhances ∼29.3%. Through the radial distribution function (RDF) analysis we found that the stronger interfacial mechanical properties are, the more PE molecular chains are attached to the GR when the GR is separated from the PE matrix. In addition, we found that vacancy defect in periodic wrinkled GR does not always degrade the interfacial mechanical properties, and when the vacancy defect content is 20%, the interfacial mechanical properties can be improved, as the vacancy defect reduces the interfacial distance and increases the roughness of the interface. read less NOT USED (low confidence) Y. Liu et al., “Investigations into the effect of cutting speed on nano-cutting of metallic glass by using molecular dynamics simulation analysis,” The International Journal of Advanced Manufacturing Technology. 2023. link Times cited: 1 NOT USED (low confidence) Z. Xiong, Y. Yu, H.-C. Chen, and L. Bai, “A coarse-grained study on mechanical behaviors of diamond-like carbon based on machine learning,” Nanotechnology. 2023. link Times cited: 2 Abstract: Diamond-like carbon (DLC) films have broad application poten… read moreAbstract: Diamond-like carbon (DLC) films have broad application potential due to their high hardness, high wear resistance, and self-lubricating properties. However, considering that DLC films are micron-scale, neither finite element methods nor macroscopic experiments can reveal their deformation and failure mechanisms. Here we propose a coarse-grained molecular dynamics (CGMD) approach which expands the capabilities of molecular dynamics simulations to uniaxial tensile behavior of DLC films at a higher scale. The Tersoff potential is modified by high-throughput screening calculations for CGMD. Given this circumstance, machine learning (ML) models are employed to reduce the high-throughput computational cost by 86%, greatly improving the efficiency of parameter optimization in second- and fourth-order CGMD. The final obtained coarse-grained tensile curves fit well with that of the all-atom curves, showing that the ML-based CGMD method can investigate DLC films at higher scales while saving a large number of computational resources, which is important for promoting the research and production of high-performance DLC films. read less NOT USED (low confidence) Q. Mao, M. Feng, X. Jiang, Y. Ren, K. Luo, and A. V. van Duin, “Classical and reactive molecular dynamics: Principles and applications in combustion and energy systems,” Progress in Energy and Combustion Science. 2023. link Times cited: 10 NOT USED (low confidence) L. Yang, B. Yang, and B. Li, “Enhancing interfacial thermal conductance of an amorphous interface by optimizing the interfacial mass distribution,” Physical Review B. 2023. link Times cited: 0 Abstract: Interfacial thermal resistance arises challenges for the the… read moreAbstract: Interfacial thermal resistance arises challenges for the thermal management as the modern semiconductors are miniatured to nanoscale. Previous studies found that graded mass distribution in interface can maximumly enhance the interfacial thermal conductance of crystalline interface, however, whether this strategy is effective for amorphous interface is less explored. In this work, graded mass distribution in the amorphous interface between crystalline Si and crystalline Ge is optimized to increase the interfacial thermal conductance by the extended atomistic Greens function method. read less NOT USED (low confidence) M. Hou, X. Zhou, M. Liu, and B. Liu, “Molecular Dynamics Simulation of High Temperature Mechanical Properties of Nano-Polycrystalline Beryllium Oxide and Relevant Experimental Verification,” Energies. 2023. link Times cited: 1 Abstract: This article investigated the deformation behavior of nano-p… read moreAbstract: This article investigated the deformation behavior of nano-polycrystalline beryllium oxide under tensile and compressive stress using the molecular dynamics simulation method. Both the tensile and compressive test results indicate that beryllium oxide breaks mainly along grain boundaries. At low temperature, there is little internal deformation of beryllium oxide grains. When the temperature is above 1473 K, the internal deformation of beryllium oxide grains also occurs, and the phenomenon becomes more obvious with the increase in temperature. This deformation within the grain should be plastic. The flexural strength fracture morphology of beryllium oxide also shows that the fracture mode of beryllium oxide is a brittle fracture at low temperature, while the slip bands appear at 1773 K. This indicates that beryllium oxide, as a ceramic material, can also undergo plastic deformation under high temperature and stress. read less NOT USED (low confidence) J. Jiang, L. Sun, H. Ma, and S. Liu, “Influence mechanisms of tool geometry parameters on surface quality and subsurface damage in polycrystalline NiFeCr superalloys,” The International Journal of Advanced Manufacturing Technology. 2023. link Times cited: 1 NOT USED (low confidence) J. M. de Sousa, W. Brandão, W. L. A. P. Silva, L. A. R. Júnior, D. S. Galvão, and M. L. P. Júnior, “Nanomechanical Behavior of Pentagraphyne-Based Single-Layer and Nanotubes through Reactive Classical Molecular Dynamics,” C. 2023. link Times cited: 0 Abstract: A novel 2D carbon allotrope, pentagraphyne (PG-yne), was int… read moreAbstract: A novel 2D carbon allotrope, pentagraphyne (PG-yne), was introduced in a recent theoretical study. This unique structure is derived from pentagraphene by incorporating acetylenic linkages between sp3 and sp2 hybridized carbon atoms. Given its intriguing electronic and structural properties, it is imperative to investigate the mechanical characteristics and thermal responses of PG-yne in both monolayer and nanotube configurations, which encompass different chiralities and diameters. We conducted fully atomistic reactive molecular dynamics (MD) simulations employing the ReaxFF potential to address these aspects. Our findings reveal that Young’s modulus of PG-yne monolayers stands at approximately 51 GPa at room temperature. In contrast, for the studied nanotubes, regardless of their chirality, it hovers around 45 GPa. Furthermore, our observations indicate that PG-yne-based systems feature an extensive and relatively flat plastic region before reaching the point of total fracture, irrespective of their topology. Regarding their thermal properties, we identified a melting point at approximately 3600 K, accompanied by a phase transition around 1100 K. read less NOT USED (low confidence) “Subcontinuum scale analysis of diamond lattice films through spatial multi-level coarsening method,” Thin-Walled Structures. 2023. link Times cited: 2 NOT USED (low confidence) M. Hou, X. Zhou, and B. Liu, “Stress corrosion phenomenon of BeO at room temperature and its mechanism: Experimental and molecular dynamics study,” Materials Today Communications. 2023. link Times cited: 0 NOT USED (low confidence) J. Tang, G. Li, Q. Wang, J. Zheng, L. Cheng, and R. Guo, “Effect of Four-Phonon Scattering on Anisotropic Thermal Transport in Bulk Hexagonal Boron Nitride by Machine Learning Interatomic Potential,” SSRN Electronic Journal. 2023. link Times cited: 3 NOT USED (low confidence) Y. Liu et al., “Deep learning inter-atomic potential for irradiation damage in 3C-SiC,” Computational Materials Science. 2023. link Times cited: 0 NOT USED (low confidence) F. Grigoriev and V. Sulimov, “Atomistic Simulation of Physical Vapor Deposition of Optical Thin Films,” Nanomaterials. 2023. link Times cited: 0 Abstract: A review of the methods and results of atomistic modeling of… read moreAbstract: A review of the methods and results of atomistic modeling of the deposition of thin optical films and a calculation of their characteristics is presented. The simulation of various processes in a vacuum chamber, including target sputtering and the formation of film layers, is considered. Methods for calculating the structural, mechanical, optical, and electronic properties of thin optical films and film-forming materials are discussed. The application of these methods to studying the dependences of the characteristics of thin optical films on the main deposition parameters is considered. The simulation results are compared with experimental data. read less NOT USED (low confidence) S. S. P. Chowdhury, A. Samudrala, and S. Mogurampelly, “Modeling interlayer interactions and phonon thermal transport in silicene bilayers,” Physical Review B. 2023. link Times cited: 0 Abstract: We develop an accurate interlayer pairwise potential derived… read moreAbstract: We develop an accurate interlayer pairwise potential derived from the \textit{ab-initio} calculations and investigate the thermal transport of silicene bilayers within the framework of equilibrium molecular dynamics simulations. The electronic properties are found to be sensitive to the temperature with the opening of the band gap in the $\Gamma$$\rightarrow$M direction. The calculated phonon thermal conductivity of bilayer silicene is surprisingly higher than that of monolayer silicene, contrary to the trends reported for other classes of 2D materials like graphene and hBN bilayers. This counterintuitive behavior of the bilayer silicene is attributed to the interlayer interaction effects and inherent buckling, which lead to a higher group velocity in the LA$_1$/LA$_2$ phonon modes. The thermal conductivity of both the mono- and bilayer silicene decreases with temperature as $\kappa\sim T^{-0.9}$ because of the strong correlations between the characteristic timescales of heat current autocorrelation function and temperature ($\tau\sim T^{-0.75}$). The mechanisms underlying phonon thermal transport in silicene bilayers are further established by analyzing the temperature induced changes in acoustic group velocity. read less NOT USED (low confidence) S. Chen and N. Xu, “Shear behavior of SiCf/SiC interface under the thermo-chemo-mechanical influence and machine-learning-based interfacial microstructure design,” Modelling and Simulation in Materials Science and Engineering. 2023. link Times cited: 0 Abstract: The mechanical behavior of composite interface can be influe… read moreAbstract: The mechanical behavior of composite interface can be influenced by multiple factors, including the morphological roughness, the structure of coating interphase, and the temperature. Here, high-throughput molecular dynamics (MD) simulations are carried out to investigate the entangled effects of these factors on the shear stiffness G , the friction coefficient μ , the debonding strain ϵd and stress τd , of SiCf/SiC interface. We find that G is maximized by small roughness and high temperature for the optimal chemical bonding effect; μ and ϵd are maximized by large roughness and low temperature, taking advantage of the mechanical interlocking effect while avoiding cusp softening; τd demonstrates two local maxima which result from the competition between chemical bonding and mechanical interlocking. Provided the MD simulation results, a variational autoencoder (VAE) model is proposed to design the microstructure of SiCf/SiC interface for desired shear properties. According to the validations, the VAE-predicted interfacial configuration demonstrates highly similar shear properties to the reference one, justifying its potential for the microstructure design of composite interface. The results of this work can be employed to facilitate the development of SiCf/SiC composite by taking advantage of the synergistic effects of multiple designable factors. read less NOT USED (low confidence) T. Zhang, F. Sun, L. Zheng, D. Wang, and Y. Feng, “Study of the effect of phase state on the interfacial thermal conductance between PCMs and ceramic skeletons,” Composite Interfaces. 2023. link Times cited: 0 Abstract: ABSTRACT Composite phase change materials with sugar alcohol… read moreAbstract: ABSTRACT Composite phase change materials with sugar alcohol as the phase change material and highly thermally conductive ceramics as the porous skeleton are widely used in various thermal storage systems. The interfacial thermal conductance (ITC) between the phase change materials under different phases and the skeleton is an important factor affecting the rate of heat storage (release) in thermal storage systems. The ITC between ceramics(AlN, SiC) and sugar alcohols (mannitol and galactitol) in the solid and liquid states is investigated by means of both time-domain thermoreflectance and molecular dynamics simulations. The results show that the ITC between phase change materials and ceramic is better in liquid state than in solid state, and that the ITC between mannitol and ceramic is better, and that the ITC betweenAlN and sugar alcohol is better. More low-frequency phonons are involved in the thermal transport of the sugar alcohols in the liquid state, with an average overlap energy of about 9.5% higher than that of the solid state and an average phonon participation rate of about 6.8% higher. It was also found that it isthe H atom in the sugar alcohol that is linked to the C atom that governs the ITC. GRAPHICAL ABSTRACT read less NOT USED (low confidence) S. González-Tortuero, M. A. Garrido, and J. Rodríguez, “An adhesion study in Ni and Cu nanocontacts from a molecular dynamics perspective,” European Journal of Mechanics - A/Solids. 2023. link Times cited: 3 NOT USED (low confidence) Y. Xie, K. Shibata, and T. Mizoguchi, “A defect formation mechanism induced by structural reconstruction of a well-known silicon grain boundary.,” Acta Materialia. 2023. link Times cited: 1 NOT USED (low confidence) G. Ye, P. Zhang, J. Zhang, Y. Zhang, and X. Huang, “Study on nanometer cutting mechanism of single crystal silicon at different temperatures,” Journal of Manufacturing Processes. 2023. link Times cited: 4 NOT USED (low confidence) S. Chen and N. Xu, “The deep-learning-based evolutionary framework trained by high-throughput molecular dynamics simulations for composite microstructure design,” Composite Structures. 2023. link Times cited: 1 NOT USED (low confidence) D. Tan, M. Willatzen, and J. Christensen, “Structuring thermal transport in pristine graphene with h-BN nanorings,” Journal of Physics and Chemistry of Solids. 2023. link Times cited: 0 NOT USED (low confidence) H. Chaney, Y. Zhou, and K. Lu, “Understanding SiOC atomic structures via synchrotron X-ray and reactive force field potential studies,” Materials Today Chemistry. 2023. link Times cited: 0 NOT USED (low confidence) J. Zhang, H. Zhang, Z. Zhao, Y. Li, and C. Zhang, “Performance analysis of thermal cloak with porous silicon structure,” International Communications in Heat and Mass Transfer. 2023. link Times cited: 0 NOT USED (low confidence) X. Feng, Z. Zhu, Z. Wu, M. Zheng, W. Chen, and X. Wei, “Atomic-scale study of the repeated friction processes of γ/γ’ phase nickel-based single crystal alloys,” Tribology International. 2023. link Times cited: 0 NOT USED (low confidence) Z. Zhu et al., “Atomic-scale study of the nano-cutting deformation mechanism of nickel-based single crystal superalloy containing Cr, Co, and γ/γ´,” Applied Physics A. 2023. link Times cited: 0 NOT USED (low confidence) V. S. Don, L. Kim, R. David, J. A. Nauman, and R. Kumar, “Adsorption Studies at the Graphene Oxide–Liquid Interface: A Molecular Dynamics Study,” The Journal of Physical Chemistry. C, Nanomaterials and Interfaces. 2023. link Times cited: 1 Abstract: The adsorption of organic aromatic molecules, namely aniline… read moreAbstract: The adsorption of organic aromatic molecules, namely aniline, onto graphene oxide is investigated using molecular simulations. The effect of the oxidation level of the graphene oxide sheet as well as the presence of two different halide salts, sodium chloride and sodium iodide, were examined. The aniline molecule in the more-reduced graphene oxide case, in the absence of added salt, showed a slightly greater affinity for the graphene oxide–water interface as compared to the oxidized form. The presence of the iodide ion increased the affinity of the aniline molecule in the reduced case but had the opposite effect for the more-oxidized form. The effect of oxidation and added salt on the interfacial water layer was also examined. read less NOT USED (low confidence) J. Cobeña-Reyes, T. Ye, and A. Martini, “Simulations of Subnanometer Scale Image Contrast in Atomic Force Microscopy of Self-Assembled Monolayers in Water,” Chemical & Biomedical Imaging. 2023. link Times cited: 0 Abstract: Achieving high-resolution images using dynamic atomic force … read moreAbstract: Achieving high-resolution images using dynamic atomic force microscopy (AFM) requires understanding how chemical and structural features of the surface affect image contrast. This understanding is particularly challenging when imaging samples in water. An initial step is to determine how well-characterized surface features interact with the AFM tip in wet environments. Here, we use molecular dynamics simulations of a model AFM tip apex oscillating in water above self-assembled monolayers (SAMs) with different chain lengths and functional groups. The amplitude response of the tip is characterized across a range of vertical distances and amplitude set points. Then relative image contrast is quantified as the difference of the amplitude response of the tip when it is positioned directly above a SAM functional group vs positioned between two functional groups. Differences in contrast between SAMs with different lengths and functional groups are explained in terms of the vertical deflection of the SAMs due to interactions with the tip and water during dynamic imaging. The knowledge gained from simulations of these simple model systems may ultimately be used to guide selection of imaging parameters for more complex surfaces. read less NOT USED (low confidence) J. Huang, J. Peng, X. Qiu, and X. Li, “Evolution of the Microstructure, Hybridization, and Internal Stress of Al-Doped Diamond-Like Carbon Coatings: A Molecular Dynamics Simulation.,” Langmuir : the ACS journal of surfaces and colloids. 2023. link Times cited: 1 Abstract: This work modified some parameters related to the bond order… read moreAbstract: This work modified some parameters related to the bond order in REBO-II of the C-C interaction and simulated the ta-C:Al film deposition using the large-scale atomic/molecular massively parallel simulator especially focused on the effect of the Al-doping content on the microstructural and mechanical properties of tetrahedral amorphous carbon films. According to the Al existence state, the Al content in the films can be divided into three ranges: range I─under 5 at % Al, a single Al atom or a small cluster with 2-3 Al atoms disperses separately in the matrix; range II─at 5-20 at. % Al, the number and incorporating Al atoms of the clusters increase with the Al content; range III─above 20 at. % Al, only a solid network of aluminum atoms forms, which becomes thickened and densified with Al content increment. The existence states of Al atoms play an essential role in determining mechanical and structural properties. With Al content increasing in the films, the isolated small cluster of atoms evolved into a whole network of aluminum inter-crossing with the C-network. With the evolution of Al existence states, the sp3C fraction decreases monotonically, while the sp2C fraction increases. In range III, the network of aluminum promotes the growth of sp1C sites. The residual compressive stress in the film decreased rapidly with the Al content increasing in range I and II, but it reached a low-level constant value in range III. read less NOT USED (low confidence) Y. Shen and S. Zhu, “Machine learning mechanical properties of defect-engineered hexagonal boron nitride,” Computational Materials Science. 2023. link Times cited: 2 NOT USED (low confidence) Y. A. Kosevich, A. Darinskii, and I. A. Strelnikov, “Diffraction and transmission antiresonances of lattice waves in sparse two-dimensional arrays of defect atoms,” Journal of Sound and Vibration. 2023. link Times cited: 1 NOT USED (low confidence) R. Guo, G. Li, J. Tang, Y. Wang, and X. Song, “Small-data-based Machine Learning Interatomic Potentials for Graphene Grain Boundaries Enabled by Structural Unit Model,” Carbon Trends. 2023. link Times cited: 2 NOT USED (low confidence) S. He et al., “A comparative investigation into the thermoelectric properties of doped graphene nanoribbons in different doping manners,” Diamond and Related Materials. 2023. link Times cited: 0 NOT USED (low confidence) S. Lin, Y. Liu, Z. Cai, and C. Zhao, “High-Throughput Screening of Aperiodic Superlattices Based on Atomistic Simulation-Informed Effective Medium Theory and Genetic Algorithm,” SSRN Electronic Journal. 2023. link Times cited: 3 NOT USED (low confidence) N. Mitra and K. Ramesh, “Physics of molecular deformation mechanism in 6H-SiC,” Modelling and Simulation in Materials Science and Engineering. 2023. link Times cited: 2 Abstract: Even though there have been several studies in literature of… read moreAbstract: Even though there have been several studies in literature of 6H SiC, a proper physics based understanding of the molecular deformation mechanisms of the material under different loading conditions is still lacking. Experimentally, the brittle nature of the material leads to difficulties associated with in-situ determination of molecular deformation mechanisms of the material under an applied load; whereas, the complex material structure along with the bonding environment prevents proper computational identification of different types of inelasticity mechanisms within the material. Molecular dynamics study (on successful verification of the interatomic potential with experimental results) of pristine single crystals of 6H SiC have been used to probe the physics of molecular deformation mechanisms of the material along with its inherent orientational anisotropy. The study elucidates the experimentally observed mechanisms of defect nucleation and evolution through a detailed analysis of radial distribution functions, x-ray diffraction as well as phonon vibrational studies of the single crystal. Studies have been presented at room temperature, initial high temperature and different types of confinement effects of the material (including hydrostatic and different biaxial loading cases). The confinement resulted in an increase in stress and stiffness whereas increase in initial temperature resulted in a decrease compared to uniaxial stress loading conditions at room temperature. read less NOT USED (low confidence) W. Chen et al., “Study on the Nano-Friction Behavior of Nickel-Based Ag Film Composites Based on Molecular Dynamics,” Lubricants. 2023. link Times cited: 0 Abstract: The nano-friction behavior of nickel-based Ag film composite… read moreAbstract: The nano-friction behavior of nickel-based Ag film composites was evaluated using molecular dynamics simulations. The mechanical properties, the surface morphology, the migration behavior of Ag atoms and the defect evolution during repeated friction were investigated. Our results show that the poor mechanical properties of the Ag film surface at the first stage of friction are related to a large amount of abrasive chip pileup. The slip channel with low shear strength formed by secondary friction significantly reduces the friction coefficient of the Ag film surface. Meanwhile, the migration of Ag atoms at the two-phase interface relies mainly on the repeated friction of the grinding ball, and the friction coefficient of the nickel surface decreases as the number of migrating atoms increases. In addition, the extension of defects inside the Ag film and atomic displacement is hindered by the two-phase interface. The defects inside the Ag film near the friction zone gradually evolve from an intrinsic stacking fault to a horizontal stacking fault as the friction proceeds. This is attributed to the horizontal layer-by-layer motion of Ag atoms, promoting the formation of horizontal stacking faults. read less NOT USED (low confidence) M. Isaiev, Y. Mankovska, V. Kuryliuk, and D. Lacroix, “Thermal transport properties of nanoporous silicon with significant specific surface area,” Applied Physics Letters. 2023. link Times cited: 1 Abstract: This paper studies thermal transport in nanoporous silicon w… read moreAbstract: This paper studies thermal transport in nanoporous silicon with a significant specific surface area. First, the equilibrium molecular dynamics approach was used to obtain the dependence of thermal conductivity on a specific surface area. Then, a modified phonon transport kinetic theory-based approach was developed to analyze thermal conductivity. Two models were used to evaluate the phonon mean free path in the porous materials. The first model assumes that the dependence of the mean free path only relies on the specific surface area, and the second one also considers the mean free path variation with the porosity. Both approaches approximate molecular dynamics data well for the smaller porosity values. However, the first model fails for highly porous matrixes, while the second one matches well with molecular dynamics simulations across all considered ranges of the porosities. This work illustrates that the phonon mean free path dependence with the porosity/volume fraction of composite materials is essential for describing thermal transport in systems with significant surface-to-volume ratio. read less NOT USED (low confidence) J. Yang, Y. Wang, and K. Bi, “Spontaneous transport of nanodroplets in 2D nanochannels,” 2023 IEEE 6th Information Technology,Networking,Electronic and Automation Control Conference (ITNEC). 2023. link Times cited: 0 Abstract: Directional transport of droplets is crucial for industrial … read moreAbstract: Directional transport of droplets is crucial for industrial applications and chemical engineering processes, which has demonstrated considerable promise in several fields, such as microelectromechanical systems and sensor devices. Nevertheless, controlled directional transport of nanodroplets in a 2D nanochannel has yet to be studied. In this work, we report an approach to achieving a self-driven behavior of a nanodroplet in a 2D nanochannel via a strain gradient. Meanwhile, the effect on the movement speed of the nanodroplet of different channel parameters is studied, including the magnitude of the strain gradient, interlayer distance, and interlayer angle of the nanochannel. Furthermore, how the nanochannel materials affect spontaneous movement is also explored. These simulation results are highly expected to shed new light on the study of the directional transport of a nanodroplet and open a new avenue for research on heat dissipation in microelectromechanical systems. read less NOT USED (low confidence) Y. Wang and B. Fu, “Effect of hydrostatic strain on the thermal conductivity of β-SiC: A combined molecular dynamics and lattice dynamics investigation,” Journal of Materials Research. 2023. link Times cited: 0 Abstract: SiC is quite often used in a variety of industrial scenarios… read moreAbstract: SiC is quite often used in a variety of industrial scenarios because of its superior mechanical and thermal properties. Strain in SiC materials is ubiquitous in industrial settings, and it affects the material’s thermal conductivity. Non-equilibrium molecular dynamics and lattice dynamics from phonon perspectives were used to study the thermal conduction process of SiC under various strains (− 7% ~ + 7%). Our research demonstrates how strain affects β-SiC’s thermal conductivity. The thermal conductivity of SiC between − 7% and + 7% strain was determined using the spectral heat current method, and the effect of phonon frequencies on thermal conductivity was investigated. Lattice dynamics was also used to calculate the phonon dispersion relation, phonon group velocity, and phonon lifetime. These phonon properties were used to study thermal conductivity from the standpoint of phonon transport. Phonon lifetime first rises and reaches its maximum with an increase in compressive strain before falling off. Thermal conductivity decreases as a result of the phonon lifetime decreasing. Group velocity and phonon lifetime gradually decrease as tensile strain increases. The thermal conductivity falls as a result of both. Our findings enhance our knowledge of the thermal conduction mechanism in β-SiC. These variations in thermal conductivity are brought on by phonon properties that change as a result of strain. This conclusion could be applied to a wide variety of other materials. Graphical abstract read less NOT USED (low confidence) Y. Xu, H. Fan, Z. Li, and Y. Zhou, “Signatures of anharmonic phonon transport in ultrahigh thermal conductance across atomically sharp metal/semiconductor interface,” International Journal of Heat and Mass Transfer. 2023. link Times cited: 4 NOT USED (low confidence) Z. Ou, W. Wu, and H. Dai, “Quantitative analysis of grinding performance of cubic silicon carbide surface texture lubricated with water film,” Tribology International. 2023. link Times cited: 5 NOT USED (low confidence) J. Liu, N. Hu, C. Chow, and D. Lau, “Water-driven expansion of boron nitride nanosheets for self-healing tobermorite composite,” Composites Science and Technology. 2023. link Times cited: 2 NOT USED (low confidence) Y. Chen, H. Liu, T. Gao, and H. Wei, “Simulation of the Irradiation Cascade Effect of 6H-SiC Based on Molecular Dynamics Principles,” Micromachines. 2023. link Times cited: 1 Abstract: When semiconductor materials are exposed to radiation fields… read moreAbstract: When semiconductor materials are exposed to radiation fields, cascade collision effects may form between the radiation particles in the radiation field and the lattice atoms in the target material, creating irradiation defects that can lead to degradation or failure of the performance of the device. In fact, 6H-SiC is one of the typical materials for third-generation broadband semiconductors and has been widely used in many areas of intense radiation, such as deep space exploration. In this paper, the irradiation cascade effect between irradiated particles of different energies in the radiation and lattice atoms in 6H-SiC target materials is simulated based on the molecular dynamics analysis method, and images of the microscopic trajectory evolution of PKA and SKA are obtained. The recombination rates of the Frenkel pairs were calculated at PKA energies of 1 keV, 2 keV, 5 keV, and 10 keV. The relationship between the number of defects, the spatial distribution pattern of defects, and the clustering of defects in the irradiation cascade effect of 6H-SiC materials with time and the energy of PKA are investigated. The results show that the clusters are dominated by vacant clusters and are mainly distributed near the trajectories of the SKA. The number and size of vacant clusters, the number of Frenkel pairs, and the intensity of cascade collisions of SKAs are positively correlated with the magnitude of the energy of the PKA. The recombination rate of Frenkel pairs is negatively correlated with the magnitude of the energy of PKA. read less NOT USED (low confidence) C. Guarda, B. Faria, N. Silvestre, and J. C. C. Lopes, “Influence of Matrix Recrystallization and Nanofiller Porosity on the Interfacial Properties of Holey Graphene-Aluminium Nanocomposites,” Composite Structures. 2023. link Times cited: 2 NOT USED (low confidence) S. S. D. V. S. S. Varma, K. R. Mangipudi, and P. Budarapu, “A coupled quantum-molecular mechanics approach for performance analysis of defective Silicon based photovoltaic solar cells,” Physica Scripta. 2023. link Times cited: 2 Abstract: Although, molecular mechanics (MM) based approaches are capa… read moreAbstract: Although, molecular mechanics (MM) based approaches are capable of simulating the dynamic charge motion of atoms over time scales up to femto-seconds, the accuracy is an issue. As a result, quantum-mechanics (QM) based approaches are a choice to predict accurate dynamic motion of atomic charges. However, computational cost of QM simulations is significantly higher than that of MM simulations. In this study, a computationally efficient coupled QM/MM model is developed by combining the QM and MM approaches, enabling simulation of larger domains with accurate estimates. The proposed methodology is implemented with the help of QMMM package available in large-scale atomic/molecular massively parallel simulator (LAMMPS), to investigate the dynamic charge motion in the presence of cracks in Silicon. A Silicon domain of dimensions 48.87 Å × 48.87 Å × 5.43 Å is considered in the simulations. Furthermore, a small domain around the crack tip, with dimensions 4 Å × 4 Å is identified for carrying out QM analysis and denoted as embedded region (ER). Simulations are performed considering four different cases: (i) pristine Silicon, (ii) Silicon with an initial edge crack, (iii) pristine Silicon with Graphene deposition, and (iv) Graphene deposited Silicon containing an initial edge crack. In the coupled model, first, for the given load step, considering the minimum energy criteria molecular dynamics simulations are performed over the entire domain. This is followed by QM simulations over an identified ER based on first principle studies using the plane wave density functional theory. The latest atom positions from the QM simulations are updated in the MM domain before proceeding to the next load step. The electrical performance of Silicon solar cells is studied by estimating the effective Bader charge and total electric power. The effective Bader charge for atoms in QM domain is observed to be significantly higher indicating charge accumulation around the crack tip. This is further evidenced through the total electric power estimations, where pristine Silicon with Graphene deposition is observed to possess the highest power followed by cases iv, ii and i. read less NOT USED (low confidence) M. Kianezhad, M. Youzi, M. Vaezi, and H. N. Pishkenari, “Unidirectional motion of C60-based nanovehicles using hybrid substrates with temperature gradient,” Scientific Reports. 2023. link Times cited: 5 NOT USED (low confidence) R. Kumar and A. Parashar, “Atomistic simulations of pristine and nanoparticle reinforced hydrogels: A review,” Wiley Interdisciplinary Reviews: Computational Molecular Science. 2023. link Times cited: 3 Abstract: Hydrogel is a three‐dimensional cross‐linked hydrophilic net… read moreAbstract: Hydrogel is a three‐dimensional cross‐linked hydrophilic network that can imbibe a large amount of water inside its structure (up to 99% of its dry weight). Due to their unique characteristics of biocompatibility and flexibility, it has found applications in diversified fields, including tissue engineering, drug delivery, biosensors, and agriculture. Even though hydrogels are widely used in the biomedical field, their lower mechanical strength still limits their application to its full potential. Hydrogels can be reinforced with organic, inorganic, and metal‐based nanofillers to improve their mechanical strength. Due to improved computational power, computational‐based techniques are emerging as a leading characterization technique for nanocomposites and hydrogels. In nanomaterials, atomistic description governs the mechanical strength and thermal behavior that realized atomistic level simulations as an appropriate approach to capture the deformation governing mechanism. Among atomistic simulations, the molecular dynamics (MD)‐based approach is emerging as a prospective technique for simulating neat and nanocomposite‐based hydrogels' mechanical and thermal behavior. The success and accuracy of MD simulation entirely depend on the force field. This review article will compile the force field employed by the research community to capture the atomistic interactions in different nanocomposite‐based hydrogels. This article will comprehensively review the progress made in the atomistic approach to study neat and nanocomposite‐based hydrogels' properties. The authors have enlightened the challenges and limitations associated with the atomistic modeling of hydrogels. read less NOT USED (low confidence) M. Eghbalian, R. Ansari, and S. Haghighi, “Molecular dynamics investigation of the mechanical properties and fracture behaviour of hydroxyl-functionalised carbon and silicon carbide nanotubes-reinforced polymer nanocomposites,” Molecular Simulation. 2023. link Times cited: 2 Abstract: ABSTRACT The tensile properties and fracture mechanism of hy… read moreAbstract: ABSTRACT The tensile properties and fracture mechanism of hydroxyl-functionalized silicon carbide nanotubes (O-fSiCNTs) inserted into polymer matrices are explored and the outcomes are compared to results for the hydroxyl-functionalized carbon nanotubes (O-fCNTs) incorporated in similar matrices. The molecular dynamics (MD) method is used and the simulations are based on the notion of representative volume elements (RVEs). The incorporation of chemisorbed nanotubes in polymers has a profound effect on the enhancement of their mechanical properties. The O-fSiCNTs inside the polyethylene (PE) and polypropylene (PP) (O-fSiCNTs/PE and O-fSiCNTs/PP) possess lower Young’s modulus, maximum stress, and strain energy as compared to the O-fCNTs/PE and O-fCNTs/PP. The zigzag O-fSiCNTs/polymer experiences lower bearable maximum strains in response to imposed loads in comparison with the O-fCNTs/polymer which is opposite to what occurs in the armchair O-fSiCNTs and O-fCNTs/polymer. The more the functionalization degree is, the weaker the structure is and its stiffness, tensile strength, tolerable strain before fracture, and ability to absorption of internal energy decline. Not only are the zigzag O-fSiCNTs/polymer stiffer than the armchair O-fSiCNTs/polymer in every percent of functionalization, but also as compared to the armchair ones, they show a lower decrease in the variation of Young’s modulus with increasing the functionalization percentage. read less NOT USED (low confidence) J. Chen, L. Fang, H. Chen, K. Sun, S. Dang, and J. Han, “Soft abrasive facilitating materials removal of SiO2/Si bilayer materials: A molecular dynamics study,” Materials Chemistry and Physics. 2023. link Times cited: 2 NOT USED (low confidence) F. Dai and L. Zhang, “Simulating changes of packing structures, locally loading states and mechanical behaviors for Si lattices with double vacancies at elevated temperatures,” Materials Science in Semiconductor Processing. 2023. link Times cited: 1 NOT USED (low confidence) E. Ghavanloo, H. Rafii-Tabar, A. Kausar, G. Giannopoulos, and S. A. Fazelzadeh, “Experimental and computational physics of fullerenes and their nanocomposites: Synthesis, thermo-mechanical characteristics and nanomedicine applications,” Physics Reports. 2023. link Times cited: 6 NOT USED (low confidence) N. Xu and S. Chen, “Establishing the interfacial microstructure-behavior relations in composites via stochastic morphology reconstruction and deep learning,” Acta Materialia. 2023. link Times cited: 1 NOT USED (low confidence) Y. Yang, X. Ou, H. Zhang, and M. Song, “Positioning of interstitial carbon atoms in the deformed Fe-C system,” Materials Today Communications. 2023. link Times cited: 1 NOT USED (low confidence) M. Tahani, E. Postek, L. Motevalizadeh, and T. Sadowski, “Effect of Vacancy Defect Content on the Interdiffusion of Cubic and Hexagonal SiC/Al Interfaces: A Molecular Dynamics Study,” Molecules. 2023. link Times cited: 5 Abstract: The mechanical properties of ceramic–metal nanocomposites ar… read moreAbstract: The mechanical properties of ceramic–metal nanocomposites are greatly affected by the equivalent properties of the interface of materials. In this study, the effect of vacancy in SiC on the interdiffusion of SiC/Al interfaces is investigated using the molecular dynamics method. The SiC reinforcements exist in the whisker and particulate forms. To this end, cubic and hexagonal SiC lattice polytypes with the Si- and C-terminated interfaces with Al are considered as two samples of metal matrix nanocomposites. The average main and cross-interdiffusion coefficients are determined using a single diffusion couple for each system. The interdiffusion coefficients of the defective SiC/Al are compared with the defect-free SiC/Al system. The effects of temperature, annealing time, and vacancy on the self- and interdiffusion coefficients are investigated. It is found that the interdiffusion of Al in SiC increases with the increase in temperature, annealing time, and vacancy. read less NOT USED (low confidence) Z. Bian et al., “Effects of different incidence rates of carbon and silicon clusters on the surface properties of SiC films,” Surfaces and Interfaces. 2023. link Times cited: 2 NOT USED (low confidence) M. Tahani, E. Postek, and T. Sadowski, “Molecular Dynamics Study of Interdiffusion for Cubic and Hexagonal SiC/Al Interfaces,” Crystals. 2022. link Times cited: 5 Abstract: The mechanical properties of the SiC/Al interface are crucia… read moreAbstract: The mechanical properties of the SiC/Al interface are crucial in estimating the overall strength of this ceramic-metal composite. The present work investigates the interdiffusion at the SiC/Al interface using molecular dynamics simulations. One cubic and one hexagonal SiC with a higher probability of orientations in contact with Al are examined as two samples of metal-matrix nanocomposites with whisker and particulate reinforcements. These reinforcements with the Si- and C-terminated surfaces of the SiC/Al interfaces are also studied. The average main and cross-interdiffusion coefficients are evaluated using a single diffusion couple for each system. The effect of temperature and annealing time are analysed on the self- and interdiffusion coefficients. It is found that the diffusion of Al in SiC is similar in cubic and hexagonal SiC and as expected, the interdiffusion coefficient increases as the temperature and annealing time increase. The model after diffusion can be used to evaluate the overall mechanical properties of the interface region in future studies. read less NOT USED (low confidence) Z. Zhou et al., “Isotope doping-induced crossover shift in the thermal conductivity of thin silicon nanowires,” Journal of Physics: Condensed Matter. 2022. link Times cited: 0 Abstract: Here, using homogeneous nonequilibrium molecular dynamics si… read moreAbstract: Here, using homogeneous nonequilibrium molecular dynamics simulations, we report the thermal transport characteristics of thin Si nanowires (NWs) with varying size and isotope doping ratio. It is identified that crossover in the thermal conductivity (κ) of both isotope doping-free and isotope doped Si-NWs appears at critical sizes, below which κ is enlarged with decreasing size because the hydrodynamic phonon flow predominates, above which, due to the dominant phonon boundary scattering, opposite behavior is observed. With increasing isotope doping, however, the critical size in minimizing the κ is moved to small values because the phonon impurity scattering caused by isotope doping is critically involved. Moreover, there is a critical isotope doping (<50%) in the critical size motion, originating from that, above which, the critical size no longer moves due to the persistence of hydrodynamic phonon flow. This study provides new insights into the thermal transport behaviors of quasi-1D structures. read less NOT USED (low confidence) S. Hahn et al., “Molecular Dynamics Study on Plasma-Surface Interactions of SiCN Dielectrics for Wafer-to-Wafer Hybrid Bonding Process,” 2022 IEEE 24th Electronics Packaging Technology Conference (EPTC). 2022. link Times cited: 1 Abstract: Recently, Cu/dielectric hybrid bonding process is receiving … read moreAbstract: Recently, Cu/dielectric hybrid bonding process is receiving a significant amount of attention as a novel technology to three-dimensionally (3D) integrate next generation devices of fine pitch (sub- $\mu\mathrm{m}$) interconnects. Among various dielectric material candidates for hybrid bonding, SiCN has been greatly considered due to its applicabilty as Cu diffusion barrier layer and reliable mechanical strength that endures chemical mechanical planarization (CMP) process. While the purpose of hybrid bonding is to establish a robust connection between the metal pads, dielectric surface layer plays a crucial role in providing reliable bonding strength to sustain Cu pads until adequate grain growths are achieved during the thermal annealing process. Thus, understanding the plasma-surface interactions of the dielectrics is essential to elucidate the surface activation mechanisms that consequently leads to the bonding quality. In this work, we present a new approach of investigating the plasma-surface interactions using atomic-scale simulation. We established a procedure to derive SiCN surface model based on the surface information and generated three different surface models according to the C/N atomic composition ratio of 0.5, 1 and 2. A series of molecular dynamics (MD) simulations that imitates plasma treatment process were performed on these surface structures to determine the state of O2 plasma activated surfaces and to figure out if there are any correlation between atomic compositions of SiCN dielectrics with the degree of surface activation, which in this work quantified by the surface areal density of SiOH. Another sets of MD simulations were performed to propose a method for promoting surface hydroxylation, which was to include OH species during the plasma treatment process step. Our simulation results indicate that surface activation can successfully be facilitated by the implication of OH species without deteriorating the surface roughness which is also an important surface feature that is known to affect the overall bonding quality. The atomistic insight we presented in this work can provide thorough understanding of SiCN dielectric surface activation process. In addition, the computational approach and procedures we proposed could be an effective measure to examine novel concepts for process development without the time and expense constraints of trial-and-error based experimental approach. read less NOT USED (low confidence) S. S. M. N. Souq, F. A. Ghasemi, and M. M. S. Fakhrabadi, “Performance of different traditional and machine learning-based atomistic potential functions in the simulation of mechanical behavior of Fe nanowires,” Computational Materials Science. 2022. link Times cited: 0 NOT USED (low confidence) J. Liu, P. Buahom, C. Lu, H. Yu, and C. B. Park, “Microscopic revelation of the solid–gas coupling and Knudsen effect on the thermal conductivity of silica aerogel with inter-connected pores,” Scientific Reports. 2022. link Times cited: 2 NOT USED (low confidence) B. Zhao, P. Zhao, H. Liu, J. Pan, and J. Wu, “Investigation on Surface Generation Mechansim of Single-Crystal Silicon in Grinding: Surface Crystal Orientation Effect,” SSRN Electronic Journal. 2022. link Times cited: 2 NOT USED (low confidence) Y. Cheng, S. Xiong, and T. Zhang, “Enhancing the Coherent Phonon Transport in SiGe Nanowires with Dense Si/Ge Interfaces,” Nanomaterials. 2022. link Times cited: 0 Abstract: The manipulation of phonon transport with coherent waves in … read moreAbstract: The manipulation of phonon transport with coherent waves in solids is of fundamental interest and useful for thermal conductivity design. Based on equilibrium molecular dynamics simulations and lattice dynamics calculations, the thermal transport in SiGe superlattice nanowires with a tuned Si/Ge interface density was investigated by using the core-shell and phononic structures as the primary stacking layers. It was found that the thermal conductivity decreased with the increase of superlattice period lengths (Lp) when Lp was larger than 4 nm. This is because introducing additional Si/Ge interfaces can enhance phonon scattering. However, when Lp<4 nm, the increased interface density could promote heat transfer. Phonon density-of-state analysis demonstrates that new modes between 10 and 14 THz are formed in structures with dense Si/Ge interfaces, which is a signature of coherent phonon transport as those modes do not belong to bulk Si or Ge. The density of the newly generated modes increases with the increase of interface density, leading to an enhanced coherent transport. Besides, with the increase of interface density, the energy distribution of the newly generated modes becomes more balanced on Si and Ge atoms, which also facilitates heat transfer. Our current work is not only helpful for understanding coherent phonon transport but also beneficial for the design of new materials with tunable thermal conductivity. read less NOT USED (low confidence) K. W. Kayang and A. Volkov, “Effect of the shell thickness on the mechanical properties of arrays composed of hybrid core-shell Si/SiC nanoparticles with overlapped shells,” Ceramics International. 2022. link Times cited: 1 NOT USED (low confidence) O. Kwon, J.-moon Kim, H.-W. Kim, K.-sub Kim, and J.-W. Kang, “A Study on Nanosensor Based on Graphene Nanoflake Transport on Graphene Nanoribbon Using Edge Vibration,” Journal of Electrical Engineering & Technology. 2022. link Times cited: 2 NOT USED (low confidence) K. Liang, X. Wang, C. Chow, and D. Lau, “A review of geopolymer and its adsorption capacity with molecular insights: A promising adsorbent of heavy metal ions,” Journal of Environmental Management. 2022. link Times cited: 12 NOT USED (low confidence) S. Haseen and P. Kroll, “Analyzing the Effect of Composition, Density, and the Morphology of the ‘free’ Carbon Phase on Elastic Moduli in Silicon Oxycarbide Ceramics,” Journal of the European Ceramic Society. 2022. link Times cited: 1 NOT USED (low confidence) H. Sharma et al., “Thermoatomic analysis of monovacancy defected single-walled boron nitride nanotube under quasi-static strain: Insights from molecular dynamics,” Materials Chemistry and Physics. 2022. link Times cited: 1 NOT USED (low confidence) T. Yokoi, H. Kato, Y. Oshima, and K. Matsunaga, “Atomic Structures of Grain Boundaries for Si and Ge: A Simulated Annealing Method with Artificial-Neural-Network Interatomic Potentials,” SSRN Electronic Journal. 2022. link Times cited: 1 NOT USED (low confidence) P. Ying, H. Dong, T. Liang, Z. Fan, Z. Zhong, and J. Zhang, “Atomistic insights into the mechanical anisotropy and fragility of monolayer fullerene networks using quantum mechanical calculations and machine-learning molecular dynamics simulations,” Extreme Mechanics Letters. 2022. link Times cited: 15 NOT USED (low confidence) H. Tian and B. Zhang, “Ballistic resistance of twisted bilayer graphene with interlayer sp3-bonding on SiC substrate,” Computational Materials Science. 2022. link Times cited: 2 NOT USED (low confidence) W. Wu, Y. Hu, X. Meng, B. Liao, and H. Dai, “Molecular dynamics analysis of the influence of ion implantation parameters on ultra-precision machining of silicon carbide,” Journal of Manufacturing Processes. 2022. link Times cited: 7 NOT USED (low confidence) G. Zhang, J. Han, Y. Chen, J. Wang, and H. Wang, “Brittle-ductile transition and nano-surface generation in diamond turning of single-crystal germanium,” Journal of Manufacturing Processes. 2022. link Times cited: 5 NOT USED (low confidence) Z. Ge, H. Li, and X. Cheng, “Research on phase transition induced plastic deformation in nanoindentation of single crystal diamond,” Diamond and Related Materials. 2022. link Times cited: 0 NOT USED (low confidence) S. D. V. S. S. V. Siruvuri, H. Verma, B. Javvaji, and P. Budarapu, “Fracture strength of Graphene at high temperatures: data driven investigations supported by MD and analytical approaches,” International Journal of Mechanics and Materials in Design. 2022. link Times cited: 3 NOT USED (low confidence) K. López-Güell, N. Forrer, X. Cartoixà, I. Zardo, and R. Rurali, “Phonon Transport in GaAs and InAs Twinning Superlattices,” The Journal of Physical Chemistry. C, Nanomaterials and Interfaces. 2022. link Times cited: 1 Abstract: Crystal phase engineering gives access to new types of perio… read moreAbstract: Crystal phase engineering gives access to new types of periodic nanostructures, such as the so-called twinning superlattices, where the motif of the superlattice is determined by a periodic rotation of the crystal. Here, by means of atomistic nonequilibrium molecular dynamics calculations, we study to what extent these periodic systems can be used to alter phonon transport in a controlled way, similar to what has been predicted and observed in conventional superlattices based on heterointerfaces. We focus on twinning superlattices in GaAs and InAs and highlight the existence of two different transport regimes: in one, each interface behaves like an independent scatterer; in the other, a segment with a sufficiently large number of closely spaced interfaces is seen by propagating phonons as a metamaterial with its own thermal properties. In this second scenario, we distinguish the case where the phonon mean free path is smaller or larger than the superlattice segment, pointing out a different dependence of the thermal resistance with the number of interfaces. read less NOT USED (low confidence) A. Tanhadoust, M. Jahanshahi, and A. Khoei, “Temperature-dependent multiscale modeling of graphene sheet under finite deformation,” Diamond and Related Materials. 2022. link Times cited: 1 NOT USED (low confidence) W. Sha, X. Dai, S. Chen, and F. Guo, “Phonon thermal transport in graphene/h-BN superlattice monolayers,” Diamond and Related Materials. 2022. link Times cited: 2 NOT USED (low confidence) B.-G. Jeong, S. Lahkar, Q. An, and K. Reddy, “Mechanical Properties and Deformation Behavior of Superhard Lightweight Nanocrystalline Ceramics,” Nanomaterials. 2022. link Times cited: 4 Abstract: Lightweight polycrystalline ceramics possess promising physi… read moreAbstract: Lightweight polycrystalline ceramics possess promising physical, chemical, and mechanical properties, which can be used in a variety of important structural applications. However, these ceramics with coarse-grained structures are brittle and have low fracture toughness due to their rigid covalent bonding (more often consisting of high-angle grain boundaries) that can cause catastrophic failures. Nanocrystalline ceramics with soft interface phases or disordered structures at grain boundaries have been demonstrated to enhance their mechanical properties, such as strength, toughness, and ductility, significantly. In this review, the underlying deformation mechanisms that are contributing to the enhanced mechanical properties of superhard nanocrystalline ceramics, particularly in boron carbide and silicon carbide, are elucidated using state-of-the-art transmission electron microscopy and first-principles simulations. The observations on these superhard ceramics revealed that grain boundary sliding induced amorphization can effectively accommodate local deformation, leading to an outstanding combination of mechanical properties. read less NOT USED (low confidence) Z. Dong, H. Wang, Y. Qi, X. Guo, R. Kang, and Y. Bao, “Effects of minimum uncut chip thickness on tungsten nano-cutting mechanism,” International Journal of Mechanical Sciences. 2022. link Times cited: 8 NOT USED (low confidence) H. An, J. Wang, and F. Fang, “Surface modification of silicon carbide at atomic and close-to-atomic scale by femtosecond laser,” 2022 8th International Conference on Nanomanufacturing & 4th AET Symposium on ACSM and Digital Manufacturing (Nanoman-AETS). 2022. link Times cited: 0 Abstract: Hexagonal silicon carbide exhibits great potential in variou… read moreAbstract: Hexagonal silicon carbide exhibits great potential in various applications due to the excellent physical and chemical properties. However, the nature of hard and brittle makes it difficult to processing especially at atomic scale. In this study, the irradiation of femtosecond laser pulse on 4H-SiC (0001) Si-face is studied using both the experiments and the simulations of hybrid molecular dynamics (MD) and two temperature model (TTM). The removal and amorphous of material induced by single laser pulse are investigated with different fluences, and the influence of energy absorption depths is discussed. An ablation crater with 4 nm depth and sub-diffraction limited size is detected, implying the importance of multi-photon ionization. This study provides an atomic view on the interaction of laser with silicon carbide, illustrating that pulsed laser with shorter wavelength is more suitable for propelling atomic and close-to-atomic scale manufacturing (ACSM). read less NOT USED (low confidence) J. Han, Y. Chen, J. Wang, G. Zhang, and H. Wang, “A review of molecular dynamics simulation in studying surface generation mechanism in ultra-precision cutting,” The International Journal of Advanced Manufacturing Technology. 2022. link Times cited: 2 NOT USED (low confidence) K. You, C. Li, D. Zhou, and K. Bi, “The piezoelectric effect on the carbon and boron nitride coaxial heteronanotubes resonator,” 2022 IEEE International Conference on Industrial Technology (ICIT). 2022. link Times cited: 0 Abstract: Carbon nanotube(CNT)-based nanoresonators exhibit high sensi… read moreAbstract: Carbon nanotube(CNT)-based nanoresonators exhibit high sensitivity in the mass detection domain, but the difficulty in tuning the resonant characteristics restricts its application. In this paper, we investigate the resonance characteristics and intrinsic dissipation of a CNT and BNNT coaxial heterostructure (CNT@BNNT) via molecular dynamics simulations. Compared with the CNT, the resonance characteristics of CNT@BNNT change with the axial strain variation induced by the electric field. Besides, the intrinsic dissipation of CNT@BNNT, mainly influenced by thermoelastic damping, has a similar variation to resonance characteristics. These interesting features indicate that CNT@BNNT is an excellent resonator with piezoelectrically tunable properties. read less NOT USED (low confidence) G. Miloshevsky, “Ultrafast laser matter interactions: modeling approaches, challenges, and prospects,” Modelling and Simulation in Materials Science and Engineering. 2022. link Times cited: 4 Abstract: The irradiation of the target surface by an ultrafast femtos… read moreAbstract: The irradiation of the target surface by an ultrafast femtosecond (fs) laser pulse produces the extreme non-equilibrium states of matter and subsequent phase transformations. Computational modeling and simulation is a very important tool for gaining insight into the physics processes that govern the laser–matter interactions, and, specifically, for quantitative understanding the laser light absorption, electron–ion energy exchange, spallation, melting, warm dense matter regime, vaporization, and expansion of plasma plume. High-fidelity predictive modeling of a variety of these multi-physics processes that take place at various time and length scales is extremely difficult, requiring the coupled multi-physics and multi-scale models. This topical review covers progress and advances in developing the modeling approaches and performing the state-of-the-art simulations of fs laser-pulse interactions with solids and plasmas. A complete kinetic description of a plasma based on the most accurate Vlasov–Maxwell set of equations is first presented and discussed in detail. After that an exact kinetic model that encompasses the microscopic motions of all the individual particles, their charge and current densities, generated electric and magnetic fields, and the effects of these fields on the motion of charged particles in a plasma is briefly reviewed. The methodology of kinetic particle-in-cell (PIC) approach that is well suitable for computational studies of the non-linear processes in laser–plasma interactions is then presented. The hydrodynamic models used for the description of plasmas under the assumption of a local thermodynamic equilibrium include the two-fluid and two-temperature model and its simplifications. The two-temperature model coupled with molecular dynamics (MD) method is finally discussed. Examples are illustrated from research areas such as applications of the fully kinetic, PIC, hydrodynamic, and MD models to studies of ultrafast laser–matter interactions. Challenges and prospects in the development of computational models and their applications to the modeling of ultrafast intense laser–solid and laser–plasma interactions are overviewed. read less NOT USED (low confidence) A. Sorkin, Y. Guo, M. Ihara, S. Manzhos, and H. Wang, “Non-invasive improvement of machining by reversible electrochemical doping: A proof of principle with computational modeling on the example of lithiation of TiO2,” Materials Chemistry and Physics. 2022. link Times cited: 3 NOT USED (low confidence) J. Lu et al., “Molecular dynamics simulation of the temperature effect on ideal mechanical properties of SiC/BN interface for SiCf/SiC composites,” Composite Interfaces. 2022. link Times cited: 0 Abstract: ABSTRACT Interfacial strength plays a significant role in th… read moreAbstract: ABSTRACT Interfacial strength plays a significant role in the mechanical properties of SiCf/SiC composites. The understanding of the micro-mechanisms of interfacial strength on mechanical properties at different temperature is important in application of SiCf/SiC composite. In the present work, the interfacial properties of ideal tensile strength and fracture toughness of SiC/BN interface at different temperature were studied based on molecular dynamics. It is revealed that the interfacial strength of Case Si (Si-terminated SiC/BN interface) decreases with the increase of temperature, resulting in the decrease of tensile strength and fracture toughness, while the interfacial strength of Case C (C-terminated SiC/BN interface) basically remains unchanged; so the interfacial properties of Case C are less affected by temperature. This phenomenon is well explained in terms of stress distribution and interface bonding number. Our results provide a good theoretical explanation for the high-temperature service performance of ceramic matrix composites. Graphical abstract read less NOT USED (low confidence) B. Yao, Z. R. Liu, and R. F. Zhang, “EAPOTc: An integrated empirical interatomic potential optimization platform for compound solids,” Computational Materials Science. 2022. link Times cited: 1 NOT USED (low confidence) H. Issa, A. Taherizadeh, and A. Maleki, “Atomistic study of the effect of grain size and reinforcement particle on mechanical behavior of magnesium / silica nanocomposite,” Materialia. 2022. link Times cited: 2 NOT USED (low confidence) A. Galashev, “Numerical simulation of functioning a silicene anode of a lithium-ion battery,” J. Comput. Sci. 2022. link Times cited: 3 NOT USED (low confidence) E. Kouroshian, V. Parvaneh, and M. Abbasi, “Multi-scale modeling of an atomic force microscope tip for the study of frictional properties and oscillation behavior,” Proceedings of the Institution of Mechanical Engineers, Part C: Journal of Mechanical Engineering Science. 2022. link Times cited: 0 Abstract: In this paper, the vibrational behavior of the atomic force … read moreAbstract: In this paper, the vibrational behavior of the atomic force microscope (AFM) on a graphene sheet sample was analyzed using a multi-scale model. The cantilever and silicone tip base were simulated using continuum mechanics and finite element modeling, while the tip apex was modeled using Tersoff potential and structural mechanics modeling. The modified Morse potential was used to model the single-layer graphene, and the Lennard-jones potential was employed as nonlinear springs to model the interactions between the graphene layers and the tip-sample. In addition, the contact behavior between the tip and graphene was investigated by measuring the friction force during the movement of the tip on the graphene sheet, and the results were compared to those obtained from a molecular dynamics simulation and an experimental test. The friction force between the tip and graphene increased by enhancing the tip radius and the contact surface between the tip and the sample. With the initial distance displacement of the tip from the sample, two curves of the tip oscillation amplitude variations and the tip oscillation and excitation vibration phase shift were plotted. In conclusion, the results of the present multi-scale model are compared with those of the MD simulation and demonstrate the strong correlation between the proposed model and the MD model. read less NOT USED (low confidence) X. Guo, Y. Gao, Z. Meng, and T. Gao, “Effect of Cooling Rate on the Crystal Quality and Crystallization Rate of SiC during Rapid Solidification Based on the Solid–Liquid Model,” Crystals. 2022. link Times cited: 1 Abstract: The silicon carbide (SiC) that can achieve better electron c… read moreAbstract: The silicon carbide (SiC) that can achieve better electron concentration and motion control is more suitable for the production of high temperature, high frequency, radiation resistance, and high-power electronic devices. However, the fabrication of the high purity single crystal is challenging, and it is hard to observe the structural details during crystallization. Here, we demonstrate a study of the crystallization of single-crystal SiC by the molecular dynamic simulations. Based on several structure analysis methods, the transition of the solid–liquid SiC interface from a liquid to a zinc-blende structure is theoretically investigated. The results indicate that most of the atoms in the solid–liquid interface begin to crystallize with rapid solidification at low cooling rates, while crystallization does not occur in the system at high cooling rates. As the quenching progresses, the number of system defects decreases, and the distribution is more concentrated in the solid–liquid interface. A maximum crystallization rate is observed for a cooling rate of 1010 K/s. Moreover, when a stronger crystallization effect is observed, the energy is lower, and the system is more stable. read less NOT USED (low confidence) J. Liang, Y. Fu, R. Hua, H. Zhang, W. Zhu, and Y. Ye, “A novel acceleration method for molecular dynamics of crystal silicon on GPUs using OpenACC,” Software: Practice and Experience. 2022. link Times cited: 1 Abstract: Compared with CUDA and OpenCL, OpenACC has the advantages of… read moreAbstract: Compared with CUDA and OpenCL, OpenACC has the advantages of simple programming, openness, and good portability for GPU acceleration. An OpenMP/OpenACC implementation for molecular dynamics of silicon crystal on GPUs is proposed. First, to make effective use of vectorization and streaming, data structure conversion and data dependence elimination are designed. Second, the parallel version on the single GPU is realized by adding OpenACC guidance sentences, with very few modifications. Third, a patch block strategy is proposed to realize the parallel version on single machine multi‐GPUs using OpenMP+OpenACC, which greatly simplifies the construction of shadow area and the exchange of shadow area data. Experimental results show that 23 to 25 speedup is achieved for the single GPU at different scales over the serial program on Intel(R) Xeon(R) CPU E5‐2690 v4, and 6.37 speedup is achieved over the single GPU when the number of atoms reaches 2,097,152 on 8GPUs on single machine. read less NOT USED (low confidence) R. Abram, D. Chrobak, J. Byggmästar, K. Nordlund, and R. Nowak, “Comprehensive structural changes in nanoscale-deformed silicon modelled with an integrated atomic potential,” Materialia. 2022. link Times cited: 2 NOT USED (low confidence) P. Liu, Q. Pei, and Y.-W. Zhang, “Failure modes and mechanisms of layered h-BN under local energy injection,” Scientific Reports. 2022. link Times cited: 1 NOT USED (low confidence) K. You, C. Li, D. Zhou, and K. Bi, “A piezoelectrically tunable resonator based on carbon and boron nitride coaxial heteronanotubes,” Applied Physics A. 2022. link Times cited: 3 NOT USED (low confidence) C. Guarda, B. Faria, N. Silvestre, J. Lopes, and N. Pugno, “Melted and recrystallized holey-graphene-reinforced aluminum composites: Structure, elasticity and strength,” Composite Structures. 2022. link Times cited: 4 NOT USED (low confidence) F. Zeighampour, A. Khoddami, H. Hadadzadeh, and M. Ghane, “The molecular dynamics study of atomic compound and functional groups effects on the atomic/thermal behavior of polyethylene glycol/graphite-based matrixes,” International Communications in Heat and Mass Transfer. 2022. link Times cited: 2 NOT USED (low confidence) Y. Fan and H. S. Shen, “Non-symmetric stiffness of origami-graphene metamaterial plates,” Composite Structures. 2022. link Times cited: 10 NOT USED (low confidence) K. Chen, Z. Xu, and X. Yang, “Graphene Oxide-Induced Structural Morphology and Colloidal Interaction at Water-Oil Interface,” Journal of Molecular Liquids. 2022. link Times cited: 1 NOT USED (low confidence) D. Chrobak, A. Majtyka-Piłat, G. Ziółkowski, and A. Chrobak, “Interatomic Potential for InP,” Materials. 2022. link Times cited: 0 Abstract: Classical modeling of structural phenomena occurring in InP … read moreAbstract: Classical modeling of structural phenomena occurring in InP crystal, for example plastic deformation caused by contact force, requires an interatomic interaction potential that correctly describes not only the elastic properties of indium phosphide but also the pressure-induced reversible phase transition B3↔B1. In this article, a new parametrization of the analytical bond-order potential has been developed for InP. The potential reproduces fundamental physical properties (lattice parameters, cohesive energy, stiffness coefficients) of the B3 and B1 phases in good agreement with first-principles calculations. The proposed interaction model describes the reversibility of the pressure-induced B3↔B1 phase transition as well as the formation of native point defects in the B3 phase. read less NOT USED (low confidence) Y. Chen and X. Yang, “Molecular simulation of layered GO membranes with amorphous structure for heavy metal ions separation,” Journal of Membrane Science. 2022. link Times cited: 12 NOT USED (low confidence) R. Bahru, M. Zamri, A. Shamsuddin, and M. A. Mohamed, “Simulation design for thermal model from various materials in electronic devices: A review,” Numerical Heat Transfer, Part A: Applications. 2022. link Times cited: 3 Abstract: The heat transfer performance in materials to remove heat is… read moreAbstract: The heat transfer performance in materials to remove heat is attained in various designs according to the devices’ design. Simulation studies are comprising of heat transfer knowledge in detail suit the theories and applications. This review provides an understanding of the simulation work focusing on the heat transfer in the various design of electronic devices. This discussion begins with a briefing on the simulation principle and current focus. Then, the review continues by explaining various simulation methods that exhibit recent heat transfer analysis. The properties of simulation studies are also summarized in detail to understand the significant properties that impact analysis. The application of simulation in thermal model is looked forward to obtain significant heat transfer improvement and impactful research direction. This review also provides insights into challenges in simulation work with available opportunities to solve the heat transfer issue by understanding fundamental knowledge. read less NOT USED (low confidence) S. Sassi et al., “Energy loss in low energy nuclear recoils in dark matter detector materials,” Physical Review D. 2022. link Times cited: 5 Abstract: Recent progress in phonon-mediated detectors with eV-scale n… read moreAbstract: Recent progress in phonon-mediated detectors with eV-scale nuclear recoil energy sensitivity requires an understanding of the effect of the crystalline defects on the energy spectrum expected from dark matter or neutrino coherent scattering. We have performed molecular dynamics simulations to determine the amount of energy stored in the lattice defects as a function of the recoil direction and energy. This energy can not be observed in the phonon measurement, thus affecting the observed energy spectrum compared to the underlying true recoil energy spectrum. We describe this effect for multiple commonly used detector materials and demonstrate how the predicted energy spectrum from dark matter scattering is modified. read less NOT USED (low confidence) M. Ek et al., “Compositional analysis of oxide-embedded III–V nanostructures,” Nanotechnology. 2022. link Times cited: 1 Abstract: Nanowire growth enables creation of embedded heterostructure… read moreAbstract: Nanowire growth enables creation of embedded heterostructures, where one material is completely surrounded by another. Through materials-selective post-growth oxidation it is also possible to combine amorphous oxides and crystalline, e.g. III–V materials. Such oxide-embedded structures pose a challenge for compositional characterization through transmission electron microscopy since the materials will overlap in projection. Furthermore, materials electrically isolated by an embedding oxide are more sensitive to electron beam-induced alterations. Methods that can directly isolate the embedded material, preferably at reduced electron doses, will be required in this situation. Here, we analyse the performance of two such techniques—local lattice parameter measurements from high resolution micrographs and bulk plasmon energy measurements from electron energy loss spectra—by applying them to analyse InP-AlInP segments embedded in amorphous aluminium oxide. We demonstrate the complementarity of the two methods, which show an overall excellent agreement. However, in regions with residual strain, which we analyse through molecular dynamics simulations, the two techniques diverge from the true value in opposite directions. read less NOT USED (low confidence) Y. J. Chung, G. H. Lee, and H. Beom, “Atomistic Insights into the Phase Transformation of Single-Crystal Silicon during Nanoindentation,” Nanomaterials. 2022. link Times cited: 0 Abstract: The influence of the indenter angle on the deformation mecha… read moreAbstract: The influence of the indenter angle on the deformation mechanisms of single-crystal Si was analyzed via molecular dynamics simulations of the nanoindentation process. Three different types of diamond conical indenters with semi-angles of 45°, 60°, and 70° were used. The load–indentation depth curves were obtained by varying the indenter angles, and the structural phase transformations of single-crystal Si were observed from an atomistic view. In addition, the hardness and elastic modulus with varying indenter angles were evaluated based on the Oliver–Pharr method and Sneddon’s solution. The simulation results showed that the indenter angle had a significant effect on the load–indentation depth curves, which resulted from the strong dependence of the elastic and plastic deformation ratios on the indenter angle during indentations. read less NOT USED (low confidence) S. Yuan et al., “Atomistic understanding of the subsurface damage mechanism of silicon (100) during the secondary nano-scratching processing,” Materials Science in Semiconductor Processing. 2022. link Times cited: 5 NOT USED (low confidence) Z. Lou, Y. Yan, Y. Geng, X. Zhao, and Z. Hao, “The effect of anisotropy of nickel-based single crystal alloys on the surface quality of sub-nanometer and near atomic scale cutting,” Intermetallics. 2022. link Times cited: 6 NOT USED (low confidence) L. Patra and R. Pandey, “Mechanical properties of 2D materials: A review on molecular dynamics based nanoindentation simulations,” Materials Today Communications. 2022. link Times cited: 8 NOT USED (low confidence) J. Chen, L. Fang, H. Chen, K. Sun, and J. Han, “Indenter Size Effect on Stress Relaxation Behaviors of Surface-modified Silicon: A Molecular Dynamics Study,” Journal of Wuhan University of Technology-Mater. Sci. Ed. 2022. link Times cited: 0 NOT USED (low confidence) J. Luo, C. Zhou, Q. Li, and L. Liu, “Thermodynamic Formation Properties of Point Defects in Germanium Crystal,” Materials. 2022. link Times cited: 0 Abstract: Point defects are crucial in determining the quality of germ… read moreAbstract: Point defects are crucial in determining the quality of germanium crystals. A quantitative understanding of the thermodynamic formation properties of the point defects is necessary for the subsequent control of the defect formation during crystal growth. Here, molecular dynamics simulations were employed to investigate the formation energies, total formation free energies and formation entropies of the point defects in a germanium crystal. As far as we know, this is the first time that the total formation free energies of point defects in a germanium crystal have been reported in the literature. We found that the formation energies increased slightly with temperature. The formation free energies decreased significantly with an increase in temperature due to the increase in entropy. The estimated total formation free energies at the melting temperature are ~1.3 eV for self-interstitial and ~0.75 eV for vacancy, corresponding to a formation entropy of ~15 kB for both types of point defects. read less NOT USED (low confidence) F. Molaei, O. Farzadian, M. Z. Dehaghani, C. Spitas, and A. H. Mashhadzadeh, “Thermal rectification in polytelescopic Ge nanowires.,” Journal of molecular graphics & modelling. 2022. link Times cited: 1 NOT USED (low confidence) F. Molaei, “Understanding the Anisotropic Mechanical Behavior of Single‐Crystalline Alpha Quartz From the Insight of Molecular Dynamics,” Journal of Geophysical Research: Solid Earth. 2022. link Times cited: 1 Abstract: Quartz is among Earth's most abundant minerals, which h… read moreAbstract: Quartz is among Earth's most abundant minerals, which has several stable polymorphs in nature. In this study, molecular dynamics simulations are used to investigate the mechanical properties of crystalline alpha quartz. The obtained results specify that tensile stress under uniaxial tension is greater in z (c‐axis) than in other directions (290 vs. 115 GPa and 190 GPa). This outcome confirms that crystalline quartz has an anisotropic behavior under applied load, and as a result, Young's modulus varies in different directions. Furthermore, the effect of existing central cracks with different lengths are considered and the results analyzed. According to the results, central cracks decrease average stress and strain, and this reduction is higher in the z‐direction([0 0 0 1]). Additionally, it was found that the strain rate affects the stress‐strain behavior of the models; however, the strain rate plays a negligible role when the central crack length extends. In terms of potential energy, simulation results indicate that potential energy is the highest in the model without any crack and reduces by growing the central crack size. read less NOT USED (low confidence) Z. Fu, X. Chen, and Q. Zhang, “Review on the lithium transport mechanism in solid‐state battery materials,” Wiley Interdisciplinary Reviews: Computational Molecular Science. 2022. link Times cited: 9 Abstract: The growing demands to mitigate climate change and environme… read moreAbstract: The growing demands to mitigate climate change and environmental degradation stimulate the rapid developments of rechargeable lithium (Li) battery technologies. Fast Li transports in battery materials are of essential significance to ensure superior Li dynamical stability and rate performance of batteries. Herein, the Li transport mechanisms in solid‐state battery materials (SSBMs) are comprehensively summarized. The collective diffusion mechanisms in solid electrolytes are elaborated, which are further understood from multiple perspectives including lattice dynamics, crystalline structure, and electronic structure. With the exponentially improving performance of computers, atomistic simulations have been playing an increasingly important role in revealing and understanding the Li transport in SSBMs, bridging the gap between experimental phenomena and theoretical models. Theoretical and experimental characterization methods for Li transports are discussed. The design strategies toward fast Li transports are classified. Finally, a perspective on the achievements and challenges of probing Li transports is provided. read less NOT USED (low confidence) M. Vaezi, H. N. Pishkenari, and A. Nemati, “Mechanism of the motion of nanovehicles on hexagonal boron-nitride: A molecular dynamics study,” Computational Materials Science. 2022. link Times cited: 4 NOT USED (low confidence) H. Wang, Z. Dong, S. Yuan, X. Guo, R. Kang, and Y. Bao, “Effects of tool geometry on tungsten removal behavior during nano-cutting,” International Journal of Mechanical Sciences. 2022. link Times cited: 19 NOT USED (low confidence) V. Choyal and S. I. Kundalwal, “Electromechanical response of stacked h-BN layers: A computational study,” Diamond and Related Materials. 2022. link Times cited: 1 NOT USED (low confidence) Y. Zhou et al., “Unusual Deformation and Fracture in Gallium Telluride Multilayers,” The Journal of Physical Chemistry Letters. 2022. link Times cited: 8 Abstract: The deformation and fracture mechanism of two-dimensional (2… read moreAbstract: The deformation and fracture mechanism of two-dimensional (2D) materials are still unclear and not thoroughly investigated. Given this, mechanical properties and mechanisms are explored on example of gallium telluride (GaTe), a promising 2D semiconductor with an ultrahigh photoresponsivity and a high flexibility. Hereby, the mechanical properties of both substrate-supported and suspended GaTe multilayers were investigated through Berkovich-tip nanoindentation instead of the commonly used AFM-based nanoindentation method. An unusual concurrence of multiple pop-in and load-drop events in loading curve was observed. Theoretical calculations unveiled this concurrence originating from the interlayer-sliding mediated layers-by-layers fracture mechanism in GaTe multilayers. The van der Waals force dominated interlayer interactions between GaTe and substrates was revealed much stronger than that between GaTe interlayers, resulting in the easy sliding and fracture of multilayers within GaTe. This work introduces new insights into the deformation and fracture of GaTe and other 2D materials in flexible electronics applications. read less NOT USED (low confidence) P. Lou, H.-Q. Pan, and Y. Wu, “Solid-liquid coexistence simulation of silicon melting point and reverse fitting correction potential function,” Other Conferences. 2022. link Times cited: 0 Abstract: In molecular dynamics simulation, the phase transition is a … read moreAbstract: In molecular dynamics simulation, the phase transition is a rather complex process, and the melting point of materials simulated often deviates greatly from the experimental reported ones. Therefore, this article simulates the phase transition temperature of silicon and tries to reduce the influence of the large error from the simulation results. We use the StillingerWeber (SW) potential to simulate the solid-liquid coexistence method and the direct heating method are used respectively to compare and simulate the melting process of silicon. The influence of atomic number on the solid-liquid coexistence simulation process of melting point is discussed, and the influence of time step and potential function directly on the melting process is further discussed. Finally, we tried to modify the SW potential function to get better results. The selected computer algorithm has been further discussed in the section "Inverse fitting Analysis". read less NOT USED (low confidence) Y. Zhou et al., “Investigation of Deformation and Fracture Mechanisms in Two-dimensional Gallium Telluride Multilayers Using Nanoindentation.” 2022. link Times cited: 0 Abstract: Two-dimensional (2D) materials possess great potential for f… read moreAbstract: Two-dimensional (2D) materials possess great potential for flexible devices, ascribing to their outstanding electrical, optical, and mechanical properties. However, their mechanical deformation property and fracture mechanism, which are inescapable in many applications like flexible optoelectronics, are still unclear or not thoroughly investigated due methodology limitations. In light of this, such mechanical properties and mechanisms are explored on example of gallium telluride (GaTe), a promising optoelectronic candidate with an ultrahigh photo-responsibility and a high plasticity within 2D family. Considering the driving force insufficient in atomic force microscopy (AFM)-based nanoindentation method, here the mechanical properties of both substrate-supported and suspended GaTe multilayers were systematically investigated through full-scale Berkovich-tip nanoindentation, micro-Raman spectroscopy, AFM, and scanning electron microscopy. An unusual concurrence of multiple pop-in and load-drop events in loading curve was observed. By further correlating to molecular dynamics calculations, this concurrence was unveiled originating from the interlayer sliding mediated layers-by-layers fracture mechanism within GaTe multilayers. The van der Waals force between GaTe multilayers and substrates was revealed much stronger than that between GaTe interlayers, resulting in the easy sliding and fracture of multilayers within GaTe. This work provides new insights into the deformation and fracture mechanisms of GaTe and other similar 2D multilayers in flexible applications. read less NOT USED (low confidence) B. Erbas, S. Yardim, and M. Kırca, “Mechanical properties of fullerene embedded silicon nanowires,” Archive of Applied Mechanics. 2022. link Times cited: 1 NOT USED (low confidence) Y. Liu, W. Wan, Q. Li, Z. Xiong, C. Tang, and L. Zhou, “Revisiting the Rate-Dependent Mechanical Response of Typical Silicon Structures via Molecular Dynamics,” Nanomaterials. 2022. link Times cited: 1 Abstract: Strain rate is a critical parameter in the mechanical applic… read moreAbstract: Strain rate is a critical parameter in the mechanical application of nano-devices. A comparative atomistic study on both perfect monocrystalline silicon crystal and silicon nanowire was performed to investigate how the strain rate affects the mechanical response of these silicon structures. Using a rate response model, the strain rate sensitivity and the critical strain rate of two structures were given. The rate-dependent dislocation activities in the fracture process were also discussed, from which the dislocation nucleation and motion were found to play an important role in the low strain rate deformations. Finally, through the comparison of five equivalent stresses, the von Mises stress was verified as a robust yield criterion of the two silicon structures under the strain rate effects. read less NOT USED (low confidence) W. Lin et al., “Comparison of Vibration-Assisted Scratch Characteristics of SiC Polytypes (3C-, 4H- and 6H-SiC),” Micromachines. 2022. link Times cited: 5 Abstract: Single-crystal silicon carbide (SiC) is widely used because … read moreAbstract: Single-crystal silicon carbide (SiC) is widely used because of its excellent properties. However, SiC is a typical hard and brittle material, and there are many challenges in realizing its high efficiency and high-precision machining. Grinding is the main method used to achieve the high-efficiency processing of SiC, but the contradiction between processing quality and processing efficiency is prominent. Vibration-assisted grinding is an effective method to realize high-efficiency and precision machining of SiC. To reveal the vibration-assisted grinding mechanism of SiC, the vibration-assisted nano-scratch process is studied using the molecular dynamics method, and the material removal process and damage formation mechanism in the vibration-assisted scratch are analyzed. Aiming at the three main structural crystal types, 3C-, 4H- and 6H-SiC, scratch simulations were carried out. The vibration-assisted scratch characteristics of SiC polytypes were evaluated from the perspectives of scratch force and the amorphous layer. It was found that the effects of vibration-assisted scratch on different crystal structures of SiC differ, and 3C-SiC is quite different from 4H- and 6H-SiC. Through vibration-assisted scratch simulations under different scratch conditions and vibration characteristics, the influence laws for machining parameters and vibration characteristic parameters were explored. It was found that increasing the frequency and amplitude was beneficial for improving the machining effect. This provides a basis for vibration-assisted grinding technology to be used in the high-efficiency precision machining of SiC. read less NOT USED (low confidence) R. Batra and A. Sircar, “Analysis of Stiction in Nanoelectromechanical Systems Using Molecular Dynamics Simulations and Continuum Theory,” Journal of Elasticity. 2022. link Times cited: 1 NOT USED (low confidence) F. Elahi and Z. Hossain, “Molecular dynamics study of interfacial strength and debonding in SiC/SiC nanocomposite,” MRS Advances. 2022. link Times cited: 1 Abstract: Using classical molecular dynamics (MD) with Stillinger–Webe… read moreAbstract: Using classical molecular dynamics (MD) with Stillinger–Weber interatomic potential, we modeled a nanocomposite with 3C-SiC [111] as a matrix and 3C-SiC [100] nanowire as the inclusion. The objective of this study is to understand the effects of the volume fraction and surface area of the inclusions on debonding under uniaxial loading conditions. Results show a significant increase in debonding strength when the surface area of the nanoinclusion is increased at a constant inclusion volume fraction. On the other hand, the higher the volume fraction of inclusion, the lower the strength. The initiation and propagation of nano-crack at the interface are analyzed from the atomistic perspective. To illustrate the findings, material-dependent power-law equations are provided for quantitative predictions of the debonding strength. read less NOT USED (low confidence) P. Tsai and Y. Jeng, “A Review on Mechanical Properties of Deformation Mechanism of Tubular Nanostructures: Molecular Dynamics Simulations,” Solid State Phenomena. 2022. link Times cited: 0 Abstract: A molecular dynamic (MD) simulation, which is used for estim… read moreAbstract: A molecular dynamic (MD) simulation, which is used for estimating mechanical properties of both microscopic and mesoscopic materials during loading/unloading processes. Understanding the deformation mechanisms of material's internal structure, shape and volume is a key step to enhance its strength and rigidity. Novel nanostructures, nanoparticles and nanocomposites, more efficient, selective, and environmental friendly can be developed and suggested. At the moment, few experimental methods can characterize molecular mechanisms due to their time-consuming and cost-intensive. Therefore, MD simulation allows to gain understanding in structure-to-function relationships involved in the low-dimensional materials. Specifically, MD simulation can be performed on the time scale of nanoseconds, and in three dimensions, it is thus sufficient for the study of the mechanical behaviors and deformation mechanisms at a molecular level. This work reviews the progress in MD simulation of the mechanical properties and structure deformations for various tubular nanomaterials including silicon, carbon and III-V compound nanotubes (NTs), respectively. In particular, we have a detailed description and analysis of the impacts of environmental and structural factors on material strength for the present nanostructures. It is hopeful that this review can provide certain reference for the follow-up research. read less NOT USED (low confidence) N. Zhang et al., “Near-Interface Defects in Graphene/H-BN In-Plane Heterostructures: Insights into the Interfacial Thermal Transport,” Nanomaterials. 2022. link Times cited: 3 Abstract: Based on nonequilibrium molecular dynamics (NEMD) and nonequ… read moreAbstract: Based on nonequilibrium molecular dynamics (NEMD) and nonequilibrium Green’s function simulations, the interfacial thermal conductance (ITC) of graphene/h-BN in-plane heterostructures with near-interface defects (monovacancy defects, 585 and f5f7 double-vacancy defects) is studied. Compared to pristine graphene/h-BN, all near-interface defects reduce the ITC of graphene/h-BN. However, differences in defective structures and the wrinkles induced by the defects cause significant discrepancies in heat transfer for defective graphene/h-BN. The stronger phonon scattering and phonon localization caused by the wider cross-section in defects and the larger wrinkles result in the double-vacancy defects having stronger energy hindrance effects than the monovacancy defects. In addition, the approximate cross-sections and wrinkles induced by the 585 and f5f7 double-vacancy defects provide approximate heat hindrance capability. The phonon transmission and vibrational density of states (VDOS) further confirm the above results. The double-vacancy defects in the near-interface region have lower low-frequency phonon transmission and VDOS values than the monovacancy defects, while the 585 and f5f7 double-vacancy defects have similar low-frequency phonon transmission and VDOS values at the near-interface region. This study provides physical insight into the thermal transport mechanisms in graphene/h-BN in-plane heterostructures with near-interface defects and provides design guidelines for related devices. read less NOT USED (low confidence) A. Rohskopf, R. Li, T. Luo, and A. Henry, “A computational framework for modeling and simulating vibrational mode dynamics,” Modelling and Simulation in Materials Science and Engineering. 2022. link Times cited: 2 Abstract: Atomic vibrations influence a variety of phenomena in solids… read moreAbstract: Atomic vibrations influence a variety of phenomena in solids and molecules, ranging from thermal transport to chemical reactions. These vibrations can be decomposed into normal modes, often known as phonons, which are collective motions of atoms vibrating at certain frequencies; this provides a rigorous basis for understanding atomic motion and its effects on material phenomena, since phonons can be detected and excited experimentally. Unfortunately, traditional theories such as the phonon gas model do not allow for the general study of vibrational modes since they only apply to ideal crystals where modes have a wave-like characteristic. Traditional computational methods based on molecular dynamics (MD) simulations allow for the study of phonons in more general systems with disorder, where the modes are less wave-like, but traditional methods do not simulate mode interactions and energy transfer between modes. Here we present, for the first time, a theory and massively parallel open-source software for modeling vibrational modes and simulating their interactions, or energy transfers, in large systems (>103 atoms) using MD. This is achieved by rewriting the atomic equations of motion in mode coordinates, from which analytical expressions for anharmonic mode coupling constants arise. Hamiltonian mechanics then provides a simple expression for calculating power transfer between modes. As a simple application of this theory, we perform MD simulations of phonon-interface scattering in a silicon–germanium superlattice and show the various pathways of energy transfer that occur. We also highlight that while many interaction pathways exist, only a tiny fraction of these pathways transfer significant amounts of energy, which is surprising. The approach allows for the prediction and simulation of mode/phonon interactions, thus unveiling the real-time dynamics of phonon behavior and energy transport. read less NOT USED (low confidence) M. Zheng et al., “Molecular dynamics study on the nanoscale repeated friction and wear mechanisms of TiC/Ni composites,” Applied Physics A. 2022. link Times cited: 0 NOT USED (low confidence) T. Wen, L. Zhang, H. Wang, W. E, and D. Srolovitz, “Deep Potentials for Materials Science,” Materials Futures. 2022. link Times cited: 54 Abstract:
To fill the gap between accurate (and expensive) ab initio… read moreAbstract:
To fill the gap between accurate (and expensive) ab initio calculations and efficient atomistic simulations based on empirical interatomic potentials, a new class of descriptions of atomic interactions has emerged and been widely applied; i.e., machine learning potentials (MLPs). One recently developed type of MLP is the Deep Potential (DP) method. In this review, we provide an introduction to DP methods in computational materials science. The theory underlying the DP method is presented along with a step-by-step introduction to their development and use. We also review materials applications of DPs in a wide range of materials systems. The DP Library provides a platform for the development of DPs and a database of extant DPs. We discuss the accuracy and efficiency of DPs compared with ab initio methods and empirical potentials. read less NOT USED (low confidence) Z. Hu et al., “Coupling of Double Grains Enforces the Grinding Process in Vibration-assisted Scratch: Insights from Molecular Dynamics,” Journal of Materials Processing Technology. 2022. link Times cited: 14 NOT USED (low confidence) F. Zhu, J. Leng, J. Jiang, T. Chang, T. Zhang, and H. Gao, “Thermal-fluctuation gradient induced tangential entropic forces in layered two-dimensional materials,” Journal of the Mechanics and Physics of Solids. 2022. link Times cited: 8 NOT USED (low confidence) S. Haghighi, R. Ansari, and Y. Keramati, “A molecular dynamics study on the vibrational behavior of perfect and defective hybrid carbon boron-nitride heteronanotubes,” Diamond and Related Materials. 2022. link Times cited: 3 NOT USED (low confidence) T. Han, Y. Sun, Z. Zhao, and X. Chen, “The effect of strain rate on the mechanical property of PDMS and PDMS/graphene: A molecular dynamics study,” Journal of Physics: Conference Series. 2022. link Times cited: 0 Abstract: Molecular dynamics simulation was used to study the mechanic… read moreAbstract: Molecular dynamics simulation was used to study the mechanical behavior of polydimethylsiloxane (PDMS) and PDMS/graphene at different strain rates. Firstly, the mechanical behavior of PDMS under uniaxial tension at different strain rates (109 /s-1010 /s) was studied. Secondly, graphene with a mass ratio of 3.62 was added to PDMS to study the mechanical behavior of the mixed system under uniaxial tension at different strain rates (108/s - 1010 /s). The results showed that the Young’s modulus and tensile strength of PDMS were greatly affected by strain rate. After adding graphene into PDMS, the mechanical properties of the blends at different strain rates were almost the same. This work may provide a deeper understanding on mechanical property of PDMS composites. read less NOT USED (low confidence) W. Yan, X. Qin, Z. Zhang, C. Zhang, and T. Gao, “Evolution of Microstructure during Rapid Solidification of SiC under High Pressure,” Advances in Condensed Matter Physics. 2022. link Times cited: 2 Abstract: The microstructure evolution of liquid silicon carbide (SiC)… read moreAbstract: The microstructure evolution of liquid silicon carbide (SiC) during rapid solidification under different pressure values is simulated with the Tersoff potential using molecular dynamics. The structure evolution characteristics of SiC are analyzed by considering the pair distribution function, bond angle distribution, coordination number, and the diagrams of the microstructure during rapid solidification. The results show that the average energy of atoms gradually increases with pressure. When the pressure reaches 100 GPa, the average energy of the atom is greater than the average energy of the atom in the initial liquid state. Under different pressures, the diffusion of atoms tends to remain stable at a temperature of about 3700 K. The application of pressure has a major impact on the arrangement of atoms, except on the third-nearest neighbor, while the impact on the nearest neighbor and the second-nearest neighbor is relatively small. The pressure increases the medium-range order of the system. The coordination numbers of Si and C atoms gradually decrease with the decrease in temperature and increase in pressure. Pressure changes the microstructure of the SiC amorphous system after solidification, and the density can be increased by adjusting the coordination number of atoms. As the pressure increases, the SiC amorphous system exhibits a dense structure with coordination numbers of 4, 5, 6, and 7. read less NOT USED (low confidence) Y. Lin and C.-Y. Wu, “Amorphous silica glass nano-grooving behavior investigated using molecular dynamics method,” Proceedings of the Institution of Mechanical Engineers, Part B: Journal of Engineering Manufacture. 2022. link Times cited: 3 Abstract: This work uses molecular dynamics to simulate the grooving b… read moreAbstract: This work uses molecular dynamics to simulate the grooving behavior of optical silica glass. The amorphous SiO2 (silica glass) was fabricated using a melting-quenching process, and the critical cut depth, and mechanism of the chip formation, were explored using a molecular dynamics simulation. The analytical results indicated that the tool edge radius affected the critical cut depth and roughness of the machined surface. A larger tool edge radius had a larger equivalent negative rake angle at the same depth of cut, causing a larger critical cut depth, while producing a smoother machined surface. In addition, the uncut chip thickness affected the tangential force and thrust force distribution weighting of the tool. The temperature field analysis revealed that a groove formed by the chip formation mechanism resulted in a higher workpiece temperature, causing the brittle material to exhibit ductile cutting behavior during the nanogrooving process. However, grooves formed by the scratching-indenting mechanism had a lower workpiece temperature. read less NOT USED (low confidence) J. Zhang, H. Zhang, W. Sun, and Q. Wang, “Mechanism analysis of double-layer nanoscale thermal cloak by silicon film,” Colloids and Surfaces A: Physicochemical and Engineering Aspects. 2022. link Times cited: 1 NOT USED (low confidence) P. Zhao, J. Pan, B. Zhao, and J. Wu, “Molecular dynamics study of crystal orientation effect on surface generation mechanism of single-crystal silicon during the nano-grinding process,” Journal of Manufacturing Processes. 2022. link Times cited: 12 NOT USED (low confidence) W. Sha and F. Guo, “Thermal transport in two-dimensional carbon nitrides: A comparative molecular dynamics study,” Carbon Trends. 2022. link Times cited: 4 NOT USED (low confidence) L. Bai and Y. Yu, “Fatigue behaviors of diamond-like carbon films,” Diamond and Related Materials. 2022. link Times cited: 3 NOT USED (low confidence) J. Liu, L. Dong, J. Li, K. Dong, T. Wang, and Z. Zhao, “Numerical Analysis of Multi-Angle Precision Microcutting of a Single-Crystal Copper Surface Based on Molecular Dynamics,” Micromachines. 2022. link Times cited: 1 Abstract: The molecular dynamics method was used to study the removal … read moreAbstract: The molecular dynamics method was used to study the removal mechanism of boron nitride particles by multi-angle microcutting of single-crystal copper from the microscopic point of view. The mechanical properties and energy conversion characteristics of single-crystal copper during microcutting were analyzed and the atomic displacement and dislocation formation in the microcutting process are discussed. The research results showed that during the energy transfer between atoms during the microcutting process of boron nitride particles, the crystal lattice of the single-crystal copper atom in the cutting extrusion region was deformed and displaced, the atomic temperature and thermal motion in the contact area between boron nitride particles and Newtonian layer of workpiece increased, the single-crystal copper atom lattice was defective, and the atomic arrangement structure was destroyed and recombined. The interface of different crystal structures formed a dislocation structure and produced plastic deformation. With the increase of the impact cutting angle, the dislocation density inside the crystal increased, the defect structure increased and the surface quality of the workpiece decreased. To protect the internal structure of the workpiece and improve the material removal rate, a smaller cutting angle should be selected for the abrasive flow microcutting function, which can reduce the formation of an internal defect structure and effectively improve the quality of abrasive flow precision machining. The research conclusions can provide a theoretical basis and technical support for the development of precision abrasive flow processing technology. read less NOT USED (low confidence) T. Jia et al., “Simulation Study on the Defect Generation, Accumulation Mechanism and Mechanical Response of GaAs Nanowires under Heavy-Ion Irradiation,” Nanomaterials. 2022. link Times cited: 4 Abstract: Nanowire structures with high-density interfaces are conside… read moreAbstract: Nanowire structures with high-density interfaces are considered to have higher radiation damage resistance properties compared to conventional bulk structures. In the present work, molecular dynamics (MD) is conducted to investigate the irradiation effects and mechanical response changes of GaAs nanowires (NWs) under heavy-ion irradiation. For this simulation, single-ion damage and high-dose ion injection are used to reveal defect generation and accumulation mechanisms. The presence of surface effects gives an advantage to defects in rapid accumulation but is also the main cause of dynamic annihilation of the surface. Overall, the defects exhibit a particular mechanism of rapid accumulation to saturation. Moreover, for the structural transformation of irradiated GaAs NWs, amorphization is the main mode. The main damage mechanism of NWs is sputtering, which also leads to erosion refinement at high doses. The high flux ions lead to a softening of the mechanical properties, which can be reflected by a reduction in yield strength and Young’s modulus. read less NOT USED (low confidence) J. Zhang, H. Zhang, W. Sun, Q. Wang, and D. Zhang, “Nanoscale Thermal Cloaking in Silicon Film: A Molecular Dynamic Study,” Materials. 2022. link Times cited: 2 Abstract: Nanoscale thermal shielding is becoming increasingly importa… read moreAbstract: Nanoscale thermal shielding is becoming increasingly important with the miniaturization of microelectronic devices. They have important uses in the field of thermal design to isolate electronic components. Several nanoscale thermal cloaks based on graphene and crystalline silicon films have been designed and experimentally verified. No study has been found that simultaneously treats the functional region of thermal cloak by amorphization and perforation methods. Therefore, in this paper, we construct a thermal cloak by the above methods, and the ratio of thermal cloaking and response temperature is used to explore its cloaking performance under constant and dynamic temperature boundary. We find that compared with the dynamic boundary, the cloaking effect produced under the constant boundary is more obvious. Under two temperature boundaries, the thermal cloak composed of amorphous and perforated has a better performance and has the least disturbance to the background temperature field. The phonon localization effect produced by the amorphous structure is more obvious than that of the perforated structure. The phonon localization of the functional region is the main reason for the cloaking phenomenon, and the stronger the phonon localization, the lower the thermal conductivity and the more obvious the cloaking effect. Our study extends the nanoscale thermal cloak construction method and facilitates the development of other nanoscale thermal functional devices. read less NOT USED (low confidence) D. Zhang, Y.-Z. Tang, S. Wang, H. Lin, and Y. He, “A study on the thermal resistance over metal–carbon nanotube interface by molecular dynamics simulation,” Composite Interfaces. 2022. link Times cited: 2 Abstract: ABSTRACT The interfacial thermal resistance between adjacent… read moreAbstract: ABSTRACT The interfacial thermal resistance between adjacent parts is important in the thermal management of micro/nano-scale systems. In this paper, the temperature difference and heat flow methods are adopted to study the interfacial thermal resistance between the smooth surface of metal and the end of carbon nanotube (CNT) by molecular dynamics simulation. The effects of metal type, CNT diameter, and mean interfacial temperature on the interfacial thermal resistance are studied in detail, with the temperature and heat flow conditions applied to the two metal atom groups of a dumbbell-shaped metal–CNT–metal model. For a certain metal type, the diameter and temperature dependences of the interfacial thermal resistance obtained from both the temperature difference and heat flow methods are consistent, the interfacial thermal resistance decreases with increase of CNT diameter exponentially, and the thermal rectification occurs due to different interfacial temperatures. The thermal transfer mechanism at the metal–CNT interface is quantitatively analyzed by calculating the overlap area of the normalized vibrational density of states. The results of this paper will provide in-depth theoretical insights into the heat transfer enhancement at nano-scale interface. Graphical abstract read less NOT USED (low confidence) G. S. Dhaliwal, P. Nair, and C. V. Singh, “Machine learned interatomic potentials using random features,” npj Computational Materials. 2022. link Times cited: 10 NOT USED (low confidence) M.-Q. Le, “Fracture and strength of single-atom-thick hexagonal materials,” Computational Materials Science. 2022. link Times cited: 1 NOT USED (low confidence) S. Jin, Z. Zhang, Y. Guo, J. Chen, M. Nomura, and S. Volz, “Optimization of interfacial thermal transport in Si/Ge heterostructure driven by machine learning,” International Journal of Heat and Mass Transfer. 2022. link Times cited: 13 NOT USED (low confidence) J. Liu, W. Jian, and D. Lau, “Boron nitride nanosheet as a promising reinforcement for cementitious composites,” Applied Surface Science. 2022. link Times cited: 14 NOT USED (low confidence) F. Monji, D. Desai, and C. Jian, “Toward the design of robust multilayer graphene: mechanistic understanding of the role played by interlayer interactions,” Journal of Materials Science. 2022. link Times cited: 1 NOT USED (low confidence) T. Zhao, H. Song, M. An, and M. Xiao, “Effect of graphene on the mechanical properties of metallic glasses: Insight from molecular dynamics simulation,” Materials Chemistry and Physics. 2022. link Times cited: 3 NOT USED (low confidence) J. Liang, R. Hua, W. Zhu, Y. Ye, Y. Fu, and H. Zhang, “OpenACC + Athread collaborative optimization of Silicon-Crystal application on Sunway TaihuLight,” Parallel Comput. 2022. link Times cited: 1 NOT USED (low confidence) L. Lou, P. Chen, C. Xiang, J. Peng, and S. Zhang, “Measuring cohesive energy of van der Waals heterostructures by nanoparticle intercalation method,” Mechanics of Materials. 2022. link Times cited: 3 NOT USED (low confidence) M. Song et al., “Sub-Band Spectrum Engineering via Structural Order in Tapered Nanowires,” Nano Letters. 2021. link Times cited: 1 Abstract: The cross-sectional dimensions of nanowires set the quantiza… read moreAbstract: The cross-sectional dimensions of nanowires set the quantization conditions for the electronic subbands they host. These can be used as a platform to realize one-dimesional topological superconductivity. Here we develop a protocol that forces such nanowires to kink and change their growth direction. Consequently, a thin rectangular nanoplate is formed, which gradually converges into a very thin square tip. We characterize the resulting tapered nanowires structurally and spectroscopically by scanning and transmission electron microscopy and scanning tunneling microscopy and spectroscopy and model their growth. A unique structure composed of ordered rows of atoms on the (110) facet of the nanoflag is further revealed by atomically resolved topography and modeled by simulations. We discuss possible advantages tapered InAs nanowires offer for Majorana zero-mode realization and manipulation. read less NOT USED (low confidence) M. Leng, B. H. Wu, A. J. Lu, L. C. Wu, C. R. Wang, and Z. Song, “Effect of off-stoichiometry on the thermal conductivity of amorphous GeTe,” Physica Scripta. 2021. link Times cited: 0 Abstract: The reversible phase change of Germanium Telluride (GeTe) is… read moreAbstract: The reversible phase change of Germanium Telluride (GeTe) is essential for developing advanced non-volatile devices. We investigate off-stoichiometric effect on the thermal and structural properties of amorphous Ge1−δ Te (0 ≤ δ ≤ 0.12) via molecular dynamics. The structural optimization due to off-stoichiometry was taken into account with an empirical potential. Our simulated thermal conductivity is in the range of experimental observations. With increasing δ, the thermal conductivity tends to be slightly reduced. Analysis on the coordination number and the bond angle distribution indicates that the off-stoichiometric Ge1−δ Te still retain its ability of rapid phase transition. These results are helpful in reliable device design and modeling. read less NOT USED (low confidence) Y. Liu, J. Hao, A. Chernatynskiy, G. Ren, and J. Zhang, “Effect of period length distribution on the thermal conductivity of Si/Ge superlattice,” International Journal of Thermal Sciences. 2021. link Times cited: 4 NOT USED (low confidence) T. Jia et al., “Numerical simulation of the primary displacement damage in GaAs1−xNx with low nitrogen atomic content,” Computational Materials Science. 2021. link Times cited: 1 NOT USED (low confidence) A. Galashev, K. A. Ivanichkina, and O. Rakhmanova, “Advanced hybrid-structured anodes for lithium-ion batteries,” Computational Materials Science. 2021. link Times cited: 5 NOT USED (low confidence) L. Shi et al., “Phonon thermal transport in diamond and lonsdaleite: A comparative study of empirical potentials,” Diamond and Related Materials. 2021. link Times cited: 3 NOT USED (low confidence) Y. Fan et al., “Nano material removal mechanism of 4H-SiC in ion implantation-assisted machining,” Computational Materials Science. 2021. link Times cited: 8 NOT USED (low confidence) L. Han, G. Jiang, X.-N. Li, and S. G. He, “Global optimization of Tan clusters by deep neural network,” Chemical Physics Letters. 2021. link Times cited: 2 NOT USED (low confidence) S. Wyant, A. Rohskopf, and A. Henry, “Machine learned interatomic potentials for modeling interfacial heat transport in Ge/GaAs,” Computational Materials Science. 2021. link Times cited: 4 NOT USED (low confidence) M. Eghbalian, R. Ansari, and S. Haghighi, “Molecular dynamics study of mechanical properties and fracture behavior of carbon and silicon carbide nanotubes under chemical adsorption of atoms,” Diamond and Related Materials. 2021. link Times cited: 10 NOT USED (low confidence) J. Zhang, H. Zhang, D. Zhang, W. Sun, and Y. Li, “Performance investigation of nanoscale thermal cloak by the perforated silicon film,” Current Applied Physics. 2021. link Times cited: 1 NOT USED (low confidence) M. Eghbalian, R. Ansari, and S. Haghighi, “On the mechanical properties and fracture analysis of polymer nanocomposites reinforced by functionalized silicon carbide nanotubes: A molecular dynamics investigation.,” Journal of molecular graphics & modelling. 2021. link Times cited: 8 NOT USED (low confidence) K. W. Kayang and A. Volkov, “Mechanical properties, phase transitions, and fragmentation mechanisms of 6H, 3C, and amorphous SiC nanoparticles under compression,” Applied Physics A. 2021. link Times cited: 5 NOT USED (low confidence) Y. Xie, K. Shibata, and T. Mizoguchi, “Integrated structural reconstruction of unit structures of the meta-stable grain boundaries in diamond-structured materials presents first-order like phase transition.” 2021. link Times cited: 0 Abstract:
One of the important issues of studying grain boundaries (… read moreAbstract:
One of the important issues of studying grain boundaries (GBs) which has recently attracted increasing interests is to investigate the phase behavior of GBs that one GB with determined disorientation and plane orientation (known as macroscopic parameters) can exist as distinct phases and perform phase transition. While such an issue has been investigated in fcc and bcc metals, GB phases in other elemental materials have not been reported. This work by applying molecular dynamics (MD) simulation explored totally around 7000 meta-stable GB phases of the <110>∑9(22‾1‾) symmetric tilt GB of silicon, germanium and diamond carbon as diamond-structured elemental materials. Meta-stable phases commonly exist in different elements were discovered and some of them were successfully verified to be reasonable by first-principle simulation. The verified meta-stable GBs were subsequently proved to have different capability to transform to the ground-stable GB at elevated temperature under MD simulation and to perform different pre-melting behaviors. We discovered a bi-directional structural reconstruction mechanism of the unit structure belonging to one of the verified meta-stable phases, by which the unit structures can transform to identical unit structures of the ground-stable GB which can present ‘opposite orientation’. Through computing the kinetic barriers by nudged-elastic-band and annealing simulation using MD, the integral behavior of the unit structures’ reconstruction is found to be a first-order like phase transition. Our work extended the research on GB phases from metals to diamond-structured materials and discovered a new GB phase transition mechanism which has not been reported before. read less NOT USED (low confidence) Z. Wu and L. Zhang, “Mechanical properties and deformation mechanisms of surface-modified 6H-silicon carbide,” Journal of Materials Science & Technology. 2021. link Times cited: 15 NOT USED (low confidence) K. Xie et al., “Neural network potential for Zr–Rh system by machine learning,” Journal of Physics: Condensed Matter. 2021. link Times cited: 3 Abstract: Zr–Rh metallic glass has enabled its many applications in ve… read moreAbstract: Zr–Rh metallic glass has enabled its many applications in vehicle parts, sports equipment and so on due to its outstanding performance in mechanical property, but the knowledge of the microstructure determining the superb mechanical property remains yet insufficient. Here, we develop a deep neural network potential of Zr–Rh system by using machine learning, which breaks the dilemma between the accuracy and efficiency in molecular dynamics simulations, and greatly improves the simulation scale in both space and time. The results show that the structural features obtained from the neural network method are in good agreement with the cases in ab initio molecular dynamics simulations. Furthermore, we build a large model of 5400 atoms to explore the influences of simulated size and cooling rate on the melt-quenching process of Zr77Rh23. Our study lays a foundation for exploring the complex structures in amorphous Zr77Rh23, which is of great significance for the design and practical application. read less NOT USED (low confidence) Z. Yu, D. Feng, Y. Feng, and X. Zhang, “Thermal conductivity and energy storage capacity enhancement and bottleneck of shape-stabilized phase change composites with graphene foam and carbon nanotubes,” Composites Part A: Applied Science and Manufacturing. 2021. link Times cited: 28 NOT USED (low confidence) C. Ji, X. Cai, Z. Zhou, F. Dong, S. Liu, and B. Gao, “Effects of intermetallic compound layer thickness on the mechanical properties of silicon-copper interface,” Materials & Design. 2021. link Times cited: 6 NOT USED (low confidence) D. Bayer-Buhr, M. Vimal, A. Prakash, U. Gross, and T. Fieback, “Determination of thermal accommodation coefficients on CaSiO3 and SiO2 using molecular dynamics and experiments,” International Journal of Heat and Mass Transfer. 2021. link Times cited: 2 NOT USED (low confidence) F. Molaei, “Molecular dynamics simulation of edge crack propagation in single crystalline alpha quartz.,” Journal of molecular graphics & modelling. 2021. link Times cited: 6 NOT USED (low confidence) X. Wu and X. Zhu, “Molecular dynamics simulations of ion beam irradiation on graphene/MoS2 heterostructure,” Scientific Reports. 2021. link Times cited: 6 NOT USED (low confidence) X. Wu, X. Zhu, and B. Lei, “Impact of ion beam irradiation on two-dimensional MoS2: a molecular dynamics simulation study,” Journal of Physics: Condensed Matter. 2021. link Times cited: 7 Abstract: Two-dimensional (2D) materials such as MoS2 have extraordina… read moreAbstract: Two-dimensional (2D) materials such as MoS2 have extraordinary properties and significant application potential in electronics, optoelectronics, energy storage, bioengineering, etc. To realize the numerous application potential, it is needed to modulate the structure and properties of these 2D materials, for which ion beam irradiation has obvious advantages. This research adopted classical molecular dynamics simulations to study the sputtering of atoms in 2D MoS2, defect formation and the control rule under Ar ion beam irradiation, considering the influence of ion irradiation parameters (i.e., ion beam energy, ion dose), layer number of 2D MoS2, substrate. Furthermore, the uniaxial mechanical performance of the ion-irradiated nanostructures was investigated for actual applications loading with mechanical stress/strain. This research could provide important theoretical support for fabricating high-performance 2D MoS2-based nanodevices by ion beam irradiation method. read less NOT USED (low confidence) A. Priyadarsini and B. Mallik, “Amphiphilicity of Intricate Layered Graphene/g-C3N4 Nanosheets.,” The journal of physical chemistry. B. 2021. link Times cited: 5 Abstract: The hybrid heterostructure of the tri-s-triazine form of gra… read moreAbstract: The hybrid heterostructure of the tri-s-triazine form of graphitic carbon nitride (g-C3N4), a stable two-dimensional material, results from intricate layer formation with graphene. In this material, g-C3N4, an amphiphilic material, stabilizes Pickering emulsions as an emulsifier and can effectively disperse graphene. Due to the various technological applications of the hybrid nanosheets in an aqueous environment, it is essential to study the interaction of water molecules with graphene and g-C3N4 (Gr/g-C3N4)-combined heterostructure. Although few studies have been performed signifying the water orientation in the interfacial layer, we find that there is a lack of detailed studies using various dynamical and structural properties of the interfacial water molecules. The interface of the Gr/g-C3N4 hybrid structure, one of the rarely found amphiphilic interfaces (on the g-C3N3 side), is appropriate for exploring the water affinity due to the availability of heterogeneous interfacial aqueous interactions. We adopted classical molecular dynamics simulations using two models for water molecules to study the structure and dynamics of an aqueous interface. We have correlated the structural properties to dynamics and spectral properties to understand the overall behavior of the amphiphilic interface. Our results branch into two significant hydrogen bond (HB) properties in HB count and HB strength among the water molecules in the different layers. The HB counts in the different layers of water are correlated using the average distance distribution (PrO4), tetrahedral order parameters, HB donor/acceptor count, and total HBs per water molecule. A conspicuous difference is found in the HB count and related dynamics of the system. The HB lifetime and diffusion coefficient hint at the equivalent strength of HBs in the different layers. All the findings conclude that the amphiphilicity of the Gr/g-C3N4 interface can help in understanding various interfacial physical and chemical processes. read less NOT USED (low confidence) P. Marashizadeh, M. Abshirini, M. Saha, L. Huang, and Y. Liu, “Atomistic Simulations on Structural Characteristics of ZnO Nanowire-Enhanced Graphene/Epoxy Polymer Composites: Implications for Lightweight Structures,” ACS Applied Nano Materials. 2021. link Times cited: 3 NOT USED (low confidence) Y. Ran et al., “The influence of twin boundary on lattice thermal conductivity of thermoelectric InSb,” Applied Physics Letters. 2021. link Times cited: 3 Abstract: Twin boundaries (TBs) can increase interface scattering to r… read moreAbstract: Twin boundaries (TBs) can increase interface scattering to reduce the lattice thermal conductivity. InSb has good electronic transport properties, but its high thermal conductivity constrains its thermoelectric application. In this work, we aim to study the role of TBs on lattice thermal conductivity of InSb. We use non-equilibrium molecular dynamics simulation to investigate how the TB spacing and orientation influence the lattice thermal conductivity of InSb. We find that TBs can hinder the heat flow, leading to decreased temperature gradient and, hence, remarkably reduced lattice thermal conductivity. The relationship between κL and λ can be described by a proportional function. Nanotwinned InSb with TB spacing of 1.1 nm has a lattice thermal conductivity of 12.6 W/m K, a decrease in 22.2% compared with its single crystal (16.2 W/m K). We also find that a minimum lattice thermal conductivity of InSb can be obtained when the TB orientation is perpendicular to the direction of heat flow. These findings provide a theoretical guidance for TBs engineering to reduce the thermal conductivity of thermoelectric materials. read less NOT USED (low confidence) R. Wang, H. Jiangbo, J. Mao, D. Hu, X. Liu, and X. Guo, “A molecular dynamics based cohesive zone model for interface failure under monotonic tension of 3D four direction SiCf/SiC composites,” Composite Structures. 2021. link Times cited: 7 NOT USED (low confidence) H. Lang et al., “Superior lubrication and electrical stability of graphene as highly effective solid lubricant at sliding electrical contact interface,” Carbon. 2021. link Times cited: 21 NOT USED (low confidence) Y. Yang, H. Zhang, X. Ou, J. Gu, and M. Song, “Deformation-induced phase transformation and twinning in Fe and Fe–C alloys,” Materials Science and Technology. 2021. link Times cited: 1 Abstract: The phase transformations and twinning in a nano-sized face-… read moreAbstract: The phase transformations and twinning in a nano-sized face-centred cubic (FCC) crystal of iron with different carbon contents are studied by molecular dynamic (MD) simulations. The simulation cells are stretched uniaxially along the direction. It is found that the FCC matrix transforms into the body-centred cubic (BCC) phase following the Nishiyama–Wassermann orientation relationship (OR). Then, the ‘BCC hexagonal close-packed (HCP)’ and ‘BCC FCC’ transformations occur following different variants of the Burgers OR and the Pitsch OR, respectively. The twins form between two neighbouring BCC grains. Additionally, the carbon atoms can destabilise the BCC phase, inhibit the phase transformation and pin phase interfaces, leading to tiny BCC twins. read less NOT USED (low confidence) Y. Liu, G. Ren, A. Chernatynskiy, and X. Zhao, “The effect of interface angle on the thermal conductivity of Si/Ge superlattices.,” Physical chemistry chemical physics : PCCP. 2021. link Times cited: 1 Abstract: Si/Ge superlattices (SLs) are good candidates for thermoelec… read moreAbstract: Si/Ge superlattices (SLs) are good candidates for thermoelectric materials because of their remarkable thermal insulating performance compared with their bulk counterparts. In this paper, the non-equilibrium molecular dynamics (NEMD) simulation method was applied to investigate the thermal conductivity of Si/Ge SLs containing tilted interfaces. It was found that the thermal conductivity will be 4-5 times higher than that of other angles when the period length is 4-8 atomic layers and the interface angle is 45°. This phenomenon can be attributed to the smooth arrangement of the 45° interface which induces phonon coherent transport. Meanwhile, the thermal conductivity has not been improved due to the phonon localization although the phonons satisfy the coherent transport when the interface angle is 90°. Interestingly, the thermal conductivity is almost unchanged with the increasing interface angle when the period length is large enough which exceeds 20 atomic layers. The main reason for the unchanged thermal conductivity is due to the period length which is greater than the phonon coherence length inducing the phonon incoherent transport. read less NOT USED (low confidence) E. Buntov and K. Arslanov, “A structural criterion for simulation of optimalion‐stimulated plasma growth of chained carbon,” Plasma Processes and Polymers. 2021. link Times cited: 1 NOT USED (low confidence) L. Qiufa, J. Lu, Z. Tian, and F. Jiang, “Controllable material removal behavior of 6H-SiC wafer in nanoscale polishing,” Applied Surface Science. 2021. link Times cited: 19 NOT USED (low confidence) L. Fan, W. Yao, and Y. Wang, “Graphene-reinforced copper matrix composites: Insights into interfacial mechanical properties of the ‘bottom-up’ hybrid configuration,” Diamond and Related Materials. 2021. link Times cited: 3 NOT USED (low confidence) A. Beaucamp, K. Nagai, T. Hirayama, M. Okada, H. Suzuki, and Y. Namba, “Elucidation of material removal mechanism in float polishing,” Precision Engineering. 2021. link Times cited: 4 NOT USED (low confidence) K. Ivanichkina, A. Galashev, and A. Isakov, “Computational modeling of electrolytic deposition of a single-layer silicon film on silver and graphite substrates,” Applied Surface Science. 2021. link Times cited: 3 NOT USED (low confidence) H. Yang, Y. Zhu, E. Dong, Y. Wu, J. Yang, and W. Zhang, “Dual adaptive sampling and machine learning interatomic potentials for modeling materials with chemical bond hierarchy,” Physical Review B. 2021. link Times cited: 4 Abstract: The development of reliable and flexible machine learning ba… read moreAbstract: The development of reliable and flexible machine learning based interatomic potentials (ML-IPs) is becoming increasingly important in studying the physical properties of complex condensed matter systems. Besides the structure descriptor model for total energy decomposition, the trial-and-error approach used in the design of the training dataset makes the ML-IP hardly improvable and reliable for modeling materials with chemical bond hierarchy. In this work, a dual adaptive sampling (DAS) method with an on the fly ambiguity threshold was developed to automatically generate an effective training dataset covering a wide temperature range or a wide spectrum of thermodynamic conditions. The DAS method consists of an inner loop for exploring the local configuration space and an outer loop for covering a wide temperature range. We validated the developed DAS method by simulating thermal transport of complex materials. The simulation results show that even with a substantially small dataset, our approach not only accurately reproduces the energies and forces but also predicts reliably effective high-order force constants to at least fourth order. The lattice thermal conductivity and its temperature dependence were evaluated using the Green-Kubo simulations with ML-IP for $\mathrm{Co}{\mathrm{Sb}}_{3}$ with up to third-order phonon scattering, and those for ${\mathrm{Mg}}_{3}{\mathrm{Sb}}_{2}$ with up to fourth-order phonon scattering, and all show good agreements with experiments. Our work provides an avenue to effectively construct a training dataset for ML-IP of complex materials with chemical bond hierarchy. read less NOT USED (low confidence) J. Zhang, H. Zhang, H. Wang, C. Xu, and Q. Wang, “Performance prediction of nanoscale thermal cloak by molecular dynamics,” Applied Physics A. 2021. link Times cited: 4 NOT USED (low confidence) B. Fu, Z. Zhang, L. Li, X. Qin, and X. Ye, “Compressive properties and behavior of copper nanowires wrapped by carbon nanotube,” Applied Physics A. 2021. link Times cited: 0 NOT USED (low confidence) J. Deng and L. Stixrude, “Thermal Conductivity of Silicate Liquid Determined by Machine Learning Potentials,” Geophysical Research Letters. 2021. link Times cited: 10 Abstract: Silicate liquids are important agents of thermal evolution, … read moreAbstract: Silicate liquids are important agents of thermal evolution, yet their thermal conductivity is largely unknown. Here, we determine the thermal conductivity of a silicate liquid by combining the Green‐Kubo method with a machine learning potential of ab initio quality over the entire pressure regime of the mantle. We find that the thermal conductivity of MgSiO3 liquid is 1.1 W m−1 K−1 at the 1 bar melting point, and 4.0 W m−1 K−1 at core‐mantle boundary conditions. The thermal conductivity increases with compression, while remaining nearly constant on isochoric heating. The pressure dependence arises from the increasing bulk modulus on compression, and the weak temperature dependence arises from the saturation of the phonon mean free path due to structural disorder. The thermal conductivity of silicate liquids is less than that of ambient mantle, a contrast that may be important for understanding melt generation, and heat flux from the core. read less NOT USED (low confidence) A. Galashev, “Study of the structure of a multicomponent salt melt using molecular dynamics modeling,” Journal of Physics: Condensed Matter. 2021. link Times cited: 0 Abstract: The composition of the electrolyte is critical in the electr… read moreAbstract: The composition of the electrolyte is critical in the electrodeposition of high-purity silicon. In this work, molecular dynamics modeling of the preparation of liquid salt melt KF–KCl–KI and a detailed study of its structure based on the method of statistical geometry have been performed. Partial radial distribution functions reflect the size of the ions under consideration and the averaged structure of the generated ionic subsystems. Halogen subsystems have domed angular distributions of nearest geometric neighbors, a wide range of face types of combined polyhedra, and fifth order rotational symmetry. The shape of the distribution of distances to the nearest neighbors of a given type depends on the amount of these ions in the melt. Small-scale thermal fluctuations in the halogen subsystems are predominantly represented by small triangular faces in combined polyhedra. The electrodeposition of silicon was carried out in a homogeneous salt melt, in which each halogen ion had from one to three close contacts with halogen ions of any other type. The simulations performed provide a fundamental understanding of the structure of the electrolyte molten salts used to produce solar silicon. read less NOT USED (low confidence) L. Cui, G. Wei, Z. Li, J.-M. Ma, and X. Du, “Coherent and incoherent effects of nanopores on thermal conductance in silicene,” International Journal of Thermal Sciences. 2021. link Times cited: 2 NOT USED (low confidence) B. Yao, Z. Liu, and R. Zhang, “EAPOTs: An integrated empirical interatomic potential optimization platform for single elemental solids,” Computational Materials Science. 2021. link Times cited: 3 NOT USED (low confidence) J. Zhang, H. Zhang, Y. Li, D. Zhang, and H. Wang, “Numerical analysis on nanoscale thermal cloak in three-dimensional silicon film with circular cavities,” Numerical Heat Transfer, Part A: Applications. 2021. link Times cited: 2 Abstract: In recent years, nanoscale thermal cloaks have attracted the… read moreAbstract: In recent years, nanoscale thermal cloaks have attracted the interest of researchers. Several different types of nanoscale thermal cloak have been developed with their performance been experimentally validated. However, most of the existing design methods are achieved by quenching the crystalline silicon membrane at high temperatures into an amorphous state to reduce the thermal conductivity of the functional region. This method is experimentally realized by ion irradiation, and the means are relatively complicated, which is not conductive to engineering applications. Defect engineering can also reduce thermal conductivity, and a lot of research has been constructed. Therefore, in the present study, we construct a nanoscale thermal cloak by perforating in a perfect silicon film to reduce thermal conductivity and investigate the effects of the number, the size, and the arrangement of holes on the cloaking performance. Results show that the nanoscale thermal cloak designed by the perforating method can also present a good cloaking effect. In addition, we optimize the cloaking performance using the response surface method and obtain the fitting equation for multiple influence factors. Interactions between each two different influence factors are explored. Furthermore, considering that the cloaking effect is generated by the reduction of thermal conductivity due to phonon localization in the functional area, the potential mechanism of the designed cloak is investigated by calculating and analyzing the phonon density of states (PDOS) and phonon mode participation rate (MPR) within the structure. The study intends to facilitate the engineering application of nanoscale thermal cloak by exploring a new design approach and provide a reference for the development of other nanoscale devices. read less NOT USED (low confidence) X. Xu, W. Fan, B. Li, and J. Cao, “Influence of GaAs crystal anisotropy on deformation behavior and residual stress distribution of nanoscratching,” Applied Physics A. 2021. link Times cited: 4 NOT USED (low confidence) A. Klemenz, L. Mayrhofer, B. Lenczowski, and M. Moseler, “Carbon nanotubes as fillers for composites with enhanced thermal conductivity,” Physical Review Materials. 2021. link Times cited: 1 Abstract: Thermal conductivities of single- and double-wall carbon nan… read moreAbstract: Thermal conductivities of single- and double-wall carbon nanotubes in contact with foreign atoms on their surfaces are investigated by means of molecular dynamics simulations. Small amounts of atoms on the surfaces of single-wall nanotubes drastically reduce their thermal conductivity, while the conductivities of the inner walls of double-wall nanotubes which are only weakly coupled to the outer walls are retained even for large amounts of atoms on the surfaces. Based on the simulation results, an estimation for the conditions under which an enhancement of thermal conductivities can be expected is presented. read less NOT USED (low confidence) T. Du et al., “Wide range continuously tunable and fast thermal switching based on compressible graphene composite foams,” Nature Communications. 2021. link Times cited: 30 NOT USED (low confidence) W.-B. Wang and M. Kambara, “A molecular dynamics simulation of inhomogeneous silicon–germanium nucleation from supersaturated vapor mixtures,” AIP Advances. 2021. link Times cited: 3 Abstract: The inhomogeneous nucleation of silicon–germanium (Si–Ge) sy… read moreAbstract: The inhomogeneous nucleation of silicon–germanium (Si–Ge) systems from supersaturated vapor mixtures was investigated using molecular dynamics simulations. Isothermal simulation runs were performed using the Tersoff potential at various supersaturations and temperatures. We focused on the inhomogeneous dynamics, nucleation rate, and critical cluster size, as well as the effect of inhomogeneity on the quantitative results. The study showed that Si atoms nucleate much faster than Ge atoms. This may lead to the inhomogeneity and final production of Si-rich critical clusters. Such inhomogeneity may also stem from the different chemical properties of Si and Ge atoms. Under the tested conditions, the nucleation rates were within 1033–1036 J/m−3 s−1. They were influenced significantly by the supersaturation and slightly by the temperature. The critical size of 2.5–4.5 atoms was heavily dependent on both the supersaturation and temperature. Our results are generally consistent with those from other nucleating systems using the same method. The inhomogeneity of the Si–Ge system has no significant effect on the nucleation rate but may contribute to smaller critical cluster sizes at low temperatures. read less NOT USED (low confidence) F. Liu et al., “Strain effects on the interfacial thermal conductance of graphene/h-BN heterostructure,” Nano Materials Science. 2021. link Times cited: 3 NOT USED (low confidence) Q. Zheng et al., “Hidden State of Si50Ge50 Nanoparticles During Rapid Solidification,” Crystal Growth & Design. 2021. link Times cited: 6 NOT USED (low confidence) L. Nan, N. Ding, T. Jiang, L. Liu, and F. Zaïri, “Mechanical properties of nanocracks in hybrid graphene/hexagonal boron nitride sheets,” Journal of Mechanics of Materials and Structures. 2021. link Times cited: 0 NOT USED (low confidence) M. Barhoumi, N. Sfina, M. Said, and S. Znaidia, “Elastic and mechanical properties of aluminium and silicon carbide using density functional theory and beyond,” Solid State Communications. 2021. link Times cited: 3 NOT USED (low confidence) C. Liu et al., “Numerical investigation on subsurface damage in nanometric cutting of single-crystal silicon at elevated temperatures,” Journal of Manufacturing Processes. 2021. link Times cited: 22 NOT USED (low confidence) Y. Huang, M. Wang, J. Li, and F. Zhu, “Removal behavior of micropipe in 4H-SiC during micromachining,” Journal of Manufacturing Processes. 2021. link Times cited: 11 NOT USED (low confidence) H. Zhaopeng, L. Zaizhen, and F. Yihang, “Study on the evolution mechanism of subsurface defects in nickel-based single crystal alloy during atomic and close-to-atomic scale cutting,” Journal of Manufacturing Processes. 2021. link Times cited: 12 NOT USED (low confidence) W. Wan, C. Tang, J. Zhang, and L. Zhou, “General Molecular Dynamics Approach to Understand the Mechanical Anisotropy of Monocrystalline Silicon under the Nanoscale Effects of Point Defect,” Nanomaterials. 2021. link Times cited: 7 Abstract: Mechanical anisotropy and point defects would greatly affect… read moreAbstract: Mechanical anisotropy and point defects would greatly affect the product quality while producing silicon wafers via diamond-wire cutting. For three major orientations concerned in wafer production, their mechanical performances under the nanoscale effects of a point defect were systematically investigated through molecular dynamics methods. The results indicated anisotropic mechanical performance with fracture phenomena in the uniaxial deformation process of monocrystalline silicon. Exponential reduction caused by the point defect has been demonstrated for some properties like yield strength and elastic strain energy release. Dislocation analysis suggested that the slip of dislocations appeared and created hexagonal diamond structures with stacking faults in the [100] orientation. Meanwhile, no dislocation was observed in [110] and [111] orientations. Visualization of atomic stress proved that the extreme stress regions of the simulation models exhibited different geometric and numerical characteristics due to the mechanical anisotropy. Moreover, the regional evolution of stress concentration and crystal fracture were interrelated and mutually promoted. This article contributes to the research towards the mechanical and fracture anisotropy of monocrystalline silicon. read less NOT USED (low confidence) S. Korobeynikov, V. V. Alyokhin, and A. Babichev, “Advanced nonlinear buckling analysis of a compressed single layer graphene sheet using the molecular mechanics method,” International Journal of Mechanical Sciences. 2021. link Times cited: 4 NOT USED (low confidence) V. Molaei and M. Damircheli, “The Study of Atomic Structure and Temperature Effects On Optimization of Carbon Nanotubes’ Adhesion Force With Dynamic Molecular Simulation.” 2021. link Times cited: 0 Abstract:
Carbon Nanotubes (CNTs) and their application in biomedica… read moreAbstract:
Carbon Nanotubes (CNTs) and their application in biomedical engineering, space robotics, or material development are fast-paced revolutionary fields. The key parameter in defining the strength and failure mechanisms of any CNT is their adhesion force capacity to different substrates. Therefore, it is of high importance to find the optimum geometrical and environmental conditions that can optimize the adhesion force for different types of CNTs. This comprehensive work presents the study of the effects of CNTs’ angle, length, diameter, temperature, chirality, and atomic defects on adhesion force. To systematically measure their effect on the adhesion force of CNTs, the single wall nanotube is simulated between two ideal graphene sheets. The simulation results show that the adhesion force increases as the angle, length, and diameter of various CNTs increase. Additionally, the temperature of the nanotubes plays a major role in the adhesion force. Adhesion force is maximized when the temperature is 300 K. Temperature can become a limiting factor on different applications of CNTs due to the atomic resonance and changes of the potential energies in their atoms. This study investigates the effect of chirality on different types of nanotubes. The results present that chirality has a higher effect on armchair-type nanotubes compared to other types. Moreover, the adhesion force of a nanotube with vacancies decreases by increasing the number of lost atoms. Thus, the adhesion force in an ideal nanotube with (11, 9) chirality is 6.14 nN. This is higher by 28%, 35%, 42%, and 53% compared to mono-vacancy, di-vacancy, tri-vacancy, and Stone-Wales defects if these defects are placed in the middle of nanotubes. Although there are extensive studies done in this field, the novelty of our work relies on the fact that different types of CNTs with different types of vacancies (with different locations) for different geometries are studied with the objective of enhancing adhesion force between CNT and graphene sheets. read less NOT USED (low confidence) Y. Huang, M. Wang, J. Li, and F. Zhu, “Effect of inclusion on 4H-SiC during nano-scratching from an atomistic perspective,” Journal of Physics: Condensed Matter. 2021. link Times cited: 11 Abstract: Inclusion, a common three-dimension defect, can be introduce… read moreAbstract: Inclusion, a common three-dimension defect, can be introduced during SiC epitaxy. In this study, we constructed nano-scratching molecular dynamics models embedded in two common types of inclusion—C-inclusion and Si-inclusion—to explore the effect of inclusion during scratching. Furthermore, the microstructure and atomistic behavior, surface morphology, scratching force, stress, and temperature were analyzed to bridge the simulation and processing parameters. The results showed that inclusion could affect the microstructure and atomistic behavior, and machinability. To eliminate inclusion completely, high penetration depth was required, but it would promote the process parameter sensitivity of inclusion. In summary, the behavior of C-inclusion embedded in SiC more likes a hard particle, while the behavior of Si-inclusion embedded in SiC more likes a soft particle. read less NOT USED (low confidence) Z. Lu et al., “Shear induced deformation twinning evolution in thermoelectric InSb,” npj Computational Materials. 2021. link Times cited: 14 NOT USED (low confidence) J. Sun, Y. Li, Y. Karaaslan, C. Sevik, and Y. Chen, “Misfit dislocation structure and thermal boundary conductance of GaN/AlN interfaces,” Journal of Applied Physics. 2021. link Times cited: 8 Abstract: The structure and thermal boundary conductance of the wurtzi… read moreAbstract: The structure and thermal boundary conductance of the wurtzite GaN/AlN (0001) interface are investigated using molecular dynamics simulation. Simulation results with three different empirical interatomic potentials have produced similar misfit dislocation networks and dislocation core structures. Specifically, the misfit dislocation network at the GaN/AlN interface is found to consist of pure edge dislocations with a Burgers vector of 1 / 3 ⟨ 1 2 ¯ 10 ⟩ and the misfit dislocation core has an eight-atom ring structure. Although different interatomic potentials lead to different dislocation properties and thermal conductance values, all have demonstrated a significant effect of misfit dislocations on the thermal boundary conductance of the GaN/AlN (0001) interface. read less NOT USED (low confidence) J. Luo, Y. Cheng, C. Zhou, T. Sinno, and L. Liu, “A general approach for calculating melt–solid impurity segregation coefficients based on thermodynamic integration,” Journal of Applied Physics. 2021. link Times cited: 1 Abstract: The equilibrium segregation of impurities at the melt–solid … read moreAbstract: The equilibrium segregation of impurities at the melt–solid interface during silicon crystallization is a key factor in determining the impurity concentration and distribution in the crystal. Unfortunately, this property is difficult to measure experimentally due to the presence of complex transport physics in the melt. Here, using the Tersoff family of empirical potential models, we describe a thermodynamic integration framework for computing the interstitial oxygen and substitutional carbon segregation coefficients in silicon. Thermodynamic integration using an ideal gas reference state for the impurity atoms is shown to be an efficient and convenient pathway for evaluating impurity chemical potentials in both solid and liquid phases. We find that the segregation coefficient is captured well for substitutional carbon impurity while it is significantly underestimated for interstitial oxygen. The latter discrepancy is partially attributed to the qualitatively incorrect silicon solid-to-liquid density ratio predicted by the empirical interatomic potential. read less NOT USED (low confidence) S. I. Kundalwal, V. Choyal, and V. Choyal, “Flexoelectric effect in boron nitride–graphene heterostructures,” Acta Mechanica. 2021. link Times cited: 12 NOT USED (low confidence) M. C. Kaymak, A. Rahnamoun, K. A. O’Hearn, A. V. van Duin, J. Kenneth M. Merz, and H. Aktulga, “JAX-ReaxFF: A Gradient Based Framework for Extremely Fast Optimization of Reactive Force Fields,” ChemRxiv. 2021. link Times cited: 1 Abstract: Molecular dynamics (MD) simulations facilitate the study of … read moreAbstract: Molecular dynamics (MD) simulations facilitate the study of physical and chemical processes of interest. Traditional classical MD models lack reactivity to explore several important phenomena; while quantum mechanical (QM) models can be used for this purpose, they come with steep computational costs. The reactive force field (ReaxFF) model bridges the gap between these approaches by incorporating dynamic bonding and polarizability. To achieve realistic simulations using ReaxFF, model parameters must be optimized against high fidelity training data, typically with QM accuracy. Existing parameter optimization methods for ReaxFF consist of black-box techniques using genetic algorithms or Monte-Carlo methods. Due to the stochastic behavior of these methods, the optimization process can require millions of error evaluations for complex parameter fitting tasks, significantly hampering the rapid development of high quality parameter sets. In this work, we present JAX ReaxFF, a novel software tool that leverages modern machine learning infrastructure to enable extremely fast optimization of ReaxFF parameters. By calculating gradients of the loss function using the JAX library, we are able to utilize highly effective local optimization methods, such as the limited Broyden–Fletcher–Goldfarb–Shanno (LBFGS) and Sequential Least Squares Programming (SLSQP) methods. As a result of the performance portability of JAX, JAX-ReaxFF can execute efficiently on multi-core CPUs, GPUs (or even TPUs). By leveraging the gradient information and modern hardware accelerators, we are able to decrease parameter optimization time for ReaxFF from days to mere minutes. JAX-ReaxFF framework can also serve as a sandbox environment for domain scientists to explore customizing the ReaxFF functional form for more accurate modeling. read less NOT USED (low confidence) J. A. García-Merino, “Cálculo de las propiedades térmicas y mecánicas de nanotubos de carbono a partir de la dispersión de fonones,” Científica. 2021. link Times cited: 0 Abstract: La importancia de estudiar a los nanotubos de carbono (CNT) … read moreAbstract: La importancia de estudiar a los nanotubos de carbono (CNT) desde una perspectiva de cristalinidad es de suma importancia ya que sus propiedades son altamente modificadas en función de su distribución atómica. Este trabajo, describe el cálculo de propiedades térmicas y mecánicas de CNT cristalinos (C-CNT) y de baja cristalinidad (LC-CNT) por medio del estudio numérico de la dispersión de fonones. La estructura de bandas y la densidad de estados de los fonones se obtuvieron por medio de un programa de cómputo (QuantumATK) y considerando CNT de las mismas dimensiones morfológicas. La diferencia en la dispersión de fonones entre los materiales resultó determinante en las propiedades térmicas y mecánicas. A pesar de que la capacidad calorífica es similar en ambos CNT, se observó una diferencia de 1 orden de magnitud para la conductividad térmica. Así mismo, el módulo de Young se calculó en 5.4 MPa para los C-CNT y en 73.6 MPa para los LCCNT. Estas diferencias se atribuyen a los valores de la velocidad del sonido en los materiales. Por otra parte, los CNT tienen una gran relación de aspecto y por tanto presentan una alta polarización molecular, lo cual lo hace un material atractivo para modular las propiedades mecánicas mediante el efecto de electrostricción. El cambio de la densidad y el módulo de Young se calcularon considerando una fuente de luz con una irradiancia entre 0.1 a 1.0 GW/cm2, tomando como base las propiedades ópticas lineales y no-lineales de los CNT de investigaciones previas. Los resultados aproximan las propiedades térmicas y mecánicas de C-CNT y/o LC-CNT analizando los modos fundamentales de vibración atómica. read less NOT USED (low confidence) R. V. Meidanshahi, D. Vasileska, and S. Goodnick, “Role of Hydrogen in the Electronic Properties of a-Si:H/c-Si Heterostructures,” Journal of Physical Chemistry C. 2021. link Times cited: 2 NOT USED (low confidence) Y. Zhou, “Assessing the quantum effect in classical thermal conductivity of amorphous silicon,” Journal of Applied Physics. 2021. link Times cited: 18 Abstract: While it is well known that the vibrational modes are fully … read moreAbstract: While it is well known that the vibrational modes are fully occupied and the quantum effect can be ignored only if the temperature is high enough, e.g., well above the Debye temperature of the systems, all vibrational modes are assumed to be fully occupied at any temperatures in classical molecular dynamics. Therefore, the thermal conductivity of crystals predicted by classical molecular dynamics at low temperatures, e.g., much lower than the corresponding Debye temperature, is unphysical. Even by applying the quantum corrections on the classical thermal conductivity of crystals, the results are still unreasonable since both the occupation and intrinsic scattering process of the vibrations are determined by the temperatures. However, the scattering picture in amorphous silicon is quite different from that in its corresponding crystal counterpart. How the quantum effect will affect the thermal transport in amorphous silicon is still unclear. Here, by systematically investigating thermal transport of amorphous silicon using equilibrium molecular dynamics, the structure factor method and the Allen–Feldman theory, we directly observe that all the vibrational modes are fully occupied at any temperatures and the quantum effect on the scattering process can be ignored. By assuming all the vibrational modes are fully occupied, the thermal conductivity calculated using the structure factor method and the Allen–Feldman theory agrees quite well with the results computed using Green–Kubo equilibrium molecular dynamics. By correcting the excitation state of the vibrations in amorphous silicon, the thermal conductivity calculated by the structure factor method and the Allen–Feldman theory can fully capture the experimentally measured temperature dependence. Our study proves that the quantum effect on the scattering process caused by the distribution functions for the amorphous materials in molecular dynamics simulations, i.e., Boltzmann distributions in molecular dynamics simulations vs Bose–Einstein distributions for the bosons, can be ignored, while the quantum effect on the excitation states of the vibrations are important and must be considered. read less NOT USED (low confidence) S. Lin, Y. Liu, and Z. Cai, “High-Throughput Screening of Aperiodic Superlattice for Minimum Thermal Conductivity Based on Atomistic Simulation-Informed Effective Medium Theory and Genetic Algorithm,” ASME 2021 Heat Transfer Summer Conference. 2021. link Times cited: 0 Abstract:
Superlattices with suppressed thermal conductivity are of … read moreAbstract:
Superlattices with suppressed thermal conductivity are of great significance in the field of thermoelectricity and can improve the thermoelectric conversion efficiency of materials. Due to Anderson localization of coherent phonons, aperiodic superlattices have lower thermal conductivity than their periodic counterparts. At present, the thermal conductivity of superlattices is mostly predicted through ab initio or molecular dynamics simulations, which is computationally expensive and limits the size of the system. Meanwhile, there are many layered structural combinations for aperiodic superlattices, making it difficult to efficiently screen through all the combinations to search structures with the minimum thermal conductivity. In this work, based on a modified series thermal resistance model (STRM), a new effective medium theory (EMT) is established to predict the thermal conductivity of periodic and aperiodic superlattices. An adjacency factor near the maximum-resistance layers and a correction function, respectively, are introduced to account for the phonon coherence effect and the degree of randomization in the layer thickness. Combined with the genetic algorithm, EMT enables high-throughput screening of millions of aperiodic superlattice structures. This work demonstrates that the thermal conductivities of aperiodic superlattices at a wide range of system size can be constantly reduced to 1.4∼1.8 W/(m·K), which occurs at averaged periodic thicknesses in a stable range of 2.0∼2.5 nm. read less NOT USED (low confidence) M. Z. Dehaghani et al., “Fracture behavior of SiGe nanosheets: Mechanics of monocrystalline vs. polycrystalline structure,” Engineering Fracture Mechanics. 2021. link Times cited: 15 NOT USED (low confidence) R. Sabetvand and H. Jami, “The study of boron-nitride nanotube behavior as an atomic nano-pump for biomedicine applications,” Journal of Molecular Modeling. 2021. link Times cited: 4 NOT USED (low confidence) X.-K. Chen, X. Hu, P. Jia, Z.-X. Xie, and J. Liu, “Tunable anisotropic thermal transport in porous carbon foams: The role of phonon coupling,” International Journal of Mechanical Sciences. 2021. link Times cited: 78 NOT USED (low confidence) A. Galashev and A. Vorob’ev, “DFT study of silicene on metal (Al, Ag, Au) substrates of various thicknesses,” Physics Letters A. 2021. link Times cited: 7 NOT USED (low confidence) Y. Huang, M. Wang, J. Li, and F. Zhu, “Effect of abrasive particle shape on the development of silicon substrate during nano-grinding,” Computational Materials Science. 2021. link Times cited: 14 NOT USED (low confidence) S. Fujii and A. Seko, “Structure and lattice thermal conductivity of grain boundaries in silicon by using machine learning potential and molecular dynamics,” Computational Materials Science. 2021. link Times cited: 8 NOT USED (low confidence) J. Madsen and T. Susi, “The abTEM code: transmission electron microscopy from first principles,” Open Research Europe. 2021. link Times cited: 72 Abstract: Simulation of transmission electron microscopy (TEM) images … read moreAbstract: Simulation of transmission electron microscopy (TEM) images or diffraction patterns is often required to interpret experimental data. Since nuclear cores dominate electron scattering, the scattering potential is typically described using the independent atom model, which completely neglects valence bonding and its effect on the transmitting electrons. As instrumentation has advanced, new measurements have revealed subtle details of the scattering potential that were previously not accessible to experiment. We have created an open-source simulation code designed to meet these demands by integrating the ability to calculate the potential via density functional theory (DFT) with a flexible modular software design. abTEM can simulate most standard imaging modes and incorporates the latest algorithmic developments. The development of new techniques requires a program that is accessible to domain experts without extensive programming experience. abTEM is written purely in Python and designed for easy modification and extension. The effective use of modern open-source libraries makes the performance of abTEM highly competitive with existing optimized codes on both CPUs and GPUs and allows us to leverage an extensive ecosystem of libraries, such as the Atomic Simulation Environment and the DFT code GPAW. abTEM is designed to work in an interactive Python notebook, creating a seamless and reproducible workflow from defining an atomic structure, calculating molecular dynamics (MD) and electrostatic potentials, to the analysis of results, all in a single, easy-to-read document. This article provides ongoing documentation of abTEM development. In this first version, we show use cases for hexagonal boron nitride, where valence bonding can be detected, a 4D-STEM simulation of molybdenum disulfide including ptychographic phase reconstruction, a comparison of MD and frozen phonon modeling for convergent-beam electron diffraction of a 2.6-million-atom silicon system, and a performance comparison of our fast implementation of the PRISM algorithm for a decahedral 20000-atom gold nanoparticle. read less NOT USED (low confidence) K. Skrobas, K. Stefanska-Skrobas, S. Stelmakh, S. Gierlotka, and B. Palosz, “Surface free energy of diamond nanocrystals - a molecular dynamics study of its size dependence.,” Physical chemistry chemical physics : PCCP. 2021. link Times cited: 4 Abstract: The dependency of the surface free energy (SFE) of diamond n… read moreAbstract: The dependency of the surface free energy (SFE) of diamond nanocrystals on particle size was studied by means of molecular dynamics (MD) and DFT simulations. It was demonstrated how to avoid the ambiguities in calculating the surface area of very small crystallites by expressing the particle size in terms of the number of atoms which we called the number of atoms convention (NAC) rather than in units of length. The NAC method was applied to a set of models terminated with either (100) or (111) crystal faces. The MD simulations were done for two widely used potentials, i.e. Tersoff and AIREBO. Both potentials show appreciable changes in surface free energy with decreasing crystal size but in opposite directions. In the limit of an infinite crystal both tested potentials give the energy of the (100) surface to be more than two times higher than that of the (111) surface. Also the absolute figures calculated from the AIREBO potential are twice larger than those from the Tersoff potential. DFT simulations of the selected small particles confirmed the MD calculations based on the AIREBO results for the (111) surface but for the (100) surface the values were considerably smaller. read less NOT USED (low confidence) A. Dadrasi, S. Fooladpanjeh, A. Albooyeh, A. Salmankhani, A. H. Mashhadzadeh, and M. Saeb, “A theoretical insight into the fracture behavior of the edge-cracked polycrystalline BC3 nanosheets,” Computational Materials Science. 2021. link Times cited: 10 NOT USED (low confidence) S. Ogane and K. Moriguchi, “A consideration of total energetics for close-packed polytypes from viewpoint of atomistic interaction distance,” MRS Advances. 2021. link Times cited: 1 Abstract: Predicting polytype phase stability for a material has still… read moreAbstract: Predicting polytype phase stability for a material has still been a long-standing issue in condensed matter physics and/or materials science. This situation stems from the fact that the atomistic interactions on polytype energetics might be surprisingly quite complex and delicate despite the simplicity of their geometrical structure. In this paper, a theoretical consideration of total energetics for the close-packed (CP) polytypes is presented based on the interlayer partial energy model where the total energy constructed from the two-body interatomic interactions is projected onto the interlayer interactions in CP polytype structures. The present study suggests that it is possible to infer the effective distance of interatomic interactions, which is important property of each element for producing new polytype-based materials, from the distribution of polytype structural energetics. read less NOT USED (low confidence) M. Rahman, E. Chowdhury, M. Shahadat, and M. Islam, “Engineered defects to modulate the phonon thermal conductivity of Silicene: A nonequilibrium molecular dynamics study,” Computational Materials Science. 2021. link Times cited: 15 NOT USED (low confidence) L. Zhang and J. Yan, “Evolution of high-pressure metastable phase Si-XIII during silicon nanoindentation: A molecular dynamics study,” Computational Materials Science. 2021. link Times cited: 5 NOT USED (low confidence) S. Singh, “Comparing different multibody reactive potentials for the elastic properties and nonlinear mechanics of the carbon nanostructures,” Mechanics of Materials. 2021. link Times cited: 0 NOT USED (low confidence) R. Mirzaamiri, S. Akbarzadeh, S. Ziaei-Rad, D. Shin, and D.-E. Kim, “Molecular dynamics simulation and experimental investigation of tribological behavior of nanodiamonds in aqueous suspensions,” Tribology International. 2021. link Times cited: 12 NOT USED (low confidence) B. Xu et al., “Weaker bonding can give larger thermal conductance at highly mismatched interfaces,” Science Advances. 2021. link Times cited: 28 Abstract: Thermal conductance at interface with weak van der Waals bon… read moreAbstract: Thermal conductance at interface with weak van der Waals bonding can become larger than that with strong covalent bonding. Thermal boundary conductance is typically positively correlated with interfacial adhesion at the interface. Here, we demonstrate a counterintuitive experimental result in which a weak van der Waals interface can give a higher thermal boundary conductance than a strong covalently bonded interface. This occurs in a system with highly mismatched vibrational frequencies (copper/diamond) modified by a self-assembled monolayer. Using finely controlled fabrication and detailed characterization, complemented by molecular simulation, the effects of bridging the vibrational spectrum mismatch and bonding at the interface are systematically varied and understood from a molecular dynamics viewpoint. The results reveal that the bridging and binding effects have a trade-off relationship and, consequently, that the bridging can overwhelm the binding effect at a highly mismatched interface. This study provides a comprehensive understanding of phonon transport at interfaces, unifying physical and chemical understandings, and allowing interfacial tailoring of the thermal transport in various material systems. read less NOT USED (low confidence) S. Lee, J. Jung, Y. S. Kim, Y. T. Kim, and S. Ryu, “Multiscale modeling framework to predict the effective stiffness of a crystalline-matrix nanocomposite,” International Journal of Engineering Science. 2021. link Times cited: 8 NOT USED (low confidence) S. Roy, A. Dutta, and N. Chakraborti, “A novel method of determining interatomic potential for Al and Al-Li alloys and studying strength of Al-Al3Li interphase using evolutionary algorithms,” Computational Materials Science. 2021. link Times cited: 13 NOT USED (low confidence) Y.-K. Weng, A. Y. Nobakht, S. Shin, K. Kihm, and D. Aaron, “Effects of mass and interaction mismatches on in-plane and cross-plane thermal transport of Si-doped graphene,” International Journal of Heat and Mass Transfer. 2021. link Times cited: 12 NOT USED (low confidence) I. Srivastava, A. Kotia, S. Ghosh, and M. Ali, “Recent advances of molecular dynamics simulations in nanotribology,” Journal of Molecular Liquids. 2021. link Times cited: 26 NOT USED (low confidence) Z. Jia, G. Wang, L.-Y. Wang, C. Tang, and C. Wang, “Mechanical behaviour of 2D hybrid structure fabricated by doping graphene with triangular h-BN cells,” Journal of Physics and Chemistry of Solids. 2021. link Times cited: 0 NOT USED (low confidence) I. S. Oliveira, J. S. Lima, A. Freitas, C. G. Bezerra, S. Azevedo, and L. D. Machado, “Investigating size effects in graphene–BN hybrid monolayers: a combined density functional theory-molecular dynamics study,” RSC Advances. 2021. link Times cited: 1 Abstract: We combine Density Functional Theory (DFT) and classical Mol… read moreAbstract: We combine Density Functional Theory (DFT) and classical Molecular Dynamics (MD) simulations to study graphene–boron nitride (BN) hybrid monolayers spanning a wide range of sizes (from 2 nm to 100 nm). Our simulations show that the elastic properties depend on the fraction of BN contained in the monolayer, with Young's modulus values decreasing as the BN concentration increases. Furthermore, our calculations reveal that the mechanical properties are weakly anisotropic. We also analyze the evolution of the stress distribution during our MD simulations. Curiously, we find that stress does not concentrate on the graphene–BN interface, even though fracture always starts in this region. Hence, we find that fracture is caused by the lower strength of C–N and C–B bonds, rather than by high local stress values. Still, in spite of the fact that the weaker bonds in the interface region become a lower fraction of the total as size increases, we find that the mechanical properties of the hybrid monolayers do not depend on the size of the structure, for constant graphene/BN concentrations. Our results indicate that the mechanical properties of the hybrid monolayers are independent of scale, so long as the graphene sheet and the h-BN nanodomain decrease or increase proportionately. read less NOT USED (low confidence) D. J. Kim et al., “Ultrahigh-strength multi-layer graphene-coated Ni film with interface-induced hardening,” Carbon. 2021. link Times cited: 15 NOT USED (low confidence) W. Li et al., “Rate dependence and anisotropy of SiC response to ramp and wave-free quasi-isentropic compression,” International Journal of Plasticity. 2021. link Times cited: 13 NOT USED (low confidence) H. Mes-adi, K. Saadouni, and M. Mazroui, “Effect of incident angle on the microstructure proprieties of Cu thin film deposited on Si (001) substrate,” Thin Solid Films. 2021. link Times cited: 8 NOT USED (low confidence) X. Zhang, Z. Chen, H. Chen, and L. Xu, “Comparative studies of thermal conductivity for bilayer graphene with different potential functions in molecular dynamic simulations,” Results in physics. 2021. link Times cited: 11 NOT USED (low confidence) Y. Liu, R. Hu, Y. Wang, J. Ma, Z. Yang, and X. Luo, “Big-data-accelerated aperiodic Si/Ge superlattice prediction for quenching thermal conduction via pattern analysis.” 2021. link Times cited: 9 NOT USED (low confidence) C. Chen, M. Lai, and F. Fang, “Study on the crack formation mechanism in nano-cutting of gallium arsenide,” Applied Surface Science. 2021. link Times cited: 26 NOT USED (low confidence) Q. Ran et al., “Molecular dynamics simulation of displacement cascades in cubic silicon carbide,” Nuclear materials and energy. 2021. link Times cited: 10 NOT USED (low confidence) S. Yang and L. Zhang, “Characterization of mechanical properties and failure of potassium dihydrogen phosphate under mechanical stressing,” Ceramics International. 2021. link Times cited: 10 NOT USED (low confidence) R. Sabetvand, D. Toghraie, and M. Hekmatifar, “The molecular dynamics study of boron-nitride nanosheet roughness after atomic bombardment process,” Journal of Molecular Liquids. 2021. link Times cited: 4 NOT USED (low confidence) A. Priyadarsini and B. Mallik, “Effects of Doped N, B, P, and S Atoms on Graphene toward Oxygen Evolution Reactions,” ACS Omega. 2021. link Times cited: 11 Abstract: Molecular oxygen and hydrogen can be obtained from the water… read moreAbstract: Molecular oxygen and hydrogen can be obtained from the water-splitting process through the electrolysis technique. However, harnessing energy is very challenging in this way due to the involvement of the 4e– reaction pathway, which is associated with a substantial amount of reaction barrier. After the report of the first N-doped graphene acting as an oxygen reduction reaction catalyst, the scientific community set out on exploring more reliable doping materials, better material engineering techniques, and developing computational models to explain the interfacial reactions. In this study, we modeled the graphene surface with four different nonmetal doping atoms N, B, P, and S individually by replacing a carbon atom from one of the graphitic positions. We report the mechanism of the complete catalytic cycle for each of the doped surfaces by the doping atom. The energy barriers for individual steps were explored using the biased first-principles molecular dynamics simulations to overcome the high reaction barrier. We explain the active sites and provide a comparison between the activation energy obtained by the application of two computational methods. Observing the rate-determining step, that is, oxo–oxo bond formation, S-doped graphene is the most effective. In contrast, N-doped graphene seems to be the least useful for oxygen evolution catalysis compared to the undoped graphene surface. B-doped graphene and P-doped graphene have an equivalent impact on the catalytic cycle. read less NOT USED (low confidence) Z. Wu, L. Zhang, and W. Liu, “Structural anisotropy effect on the nanoscratching of monocrystalline 6H-silicon carbide,” Wear. 2021. link Times cited: 20 NOT USED (low confidence) P. Fan, S. Goel, X. Luo, Y. Yan, Y. Geng, and Y. Wang, “An atomistic investigation on the wear of diamond during atomic force microscope tip-based nanomachining of gallium arsenide,” Computational Materials Science. 2021. link Times cited: 11 NOT USED (low confidence) D. T. N. Tranh, V. V. Hoang, and T. T. Hanh, “Modeling glassy SiC nanoribbon by rapidly cooling from the liquid: An affirmation of appropriate potentials,” Physica B-condensed Matter. 2021. link Times cited: 6 NOT USED (low confidence) V. Fomin and A. Filippov, “A Review of Methods for Studying the Elastic Characteristics of Nanoobjects,” Physical Mesomechanics. 2021. link Times cited: 0 NOT USED (low confidence) A. Galashev, K. Ivanichkina, A. Vorob’ev, O. Rakhmanova, K. Katin, and M. Maslov, “Improved lithium-ion batteries and their communication with hydrogen power,” International Journal of Hydrogen Energy. 2021. link Times cited: 9 NOT USED (low confidence) J. Shi, L. Yang, J. Shen, and K. Cai, “Nonlinear vibration of a buckled/damaged BNC nanobeam transversally impacted by a high-speed C60,” Scientific Reports. 2021. link Times cited: 0 NOT USED (low confidence) D. Dickel and M. Daw, “Calculation of mode lifetimes in weakly anharmonic solids using self-consistent ensemble eigenstates of the Liouvillian,” Computational Materials Science. 2020. link Times cited: 0 NOT USED (low confidence) S. D. D. Nath, N. K. Peyada, and S.-G. Kim, “On the elastic modulus, and ultimate strength of Ge, Ge-Si nanowires,” Computational Materials Science. 2020. link Times cited: 2 NOT USED (low confidence) A. Galashev, “Computational investigation of silicene/nickel anode for lithium-ion battery,” Solid State Ionics. 2020. link Times cited: 8 NOT USED (low confidence) K. Mohammadi, A. A. Madadi, Z. Bajalan, and H. N. Pishkenari, “Analysis of mechanical and thermal properties of carbon and silicon nanomaterials using a coarse-grained molecular dynamics method,” International Journal of Mechanical Sciences. 2020. link Times cited: 8 NOT USED (low confidence) Y. Yu, W. Tang, Z. Liu, and L. Bai, “Deformation mechanisms of Si-doped diamond-like carbon films under uniaxial tension conditions,” Diamond and Related Materials. 2020. link Times cited: 4 NOT USED (low confidence) Z. Yu, Y. Feng, D. Feng, and X. Zhang, “Thermal properties of three-dimensional hierarchical porous graphene foam-carbon nanotube hybrid structure composites with phase change materials,” Microporous and Mesoporous Materials. 2020. link Times cited: 31 NOT USED (low confidence) V.-T. Pham and T. Fang, “Influences of grain size, alloy composition, and temperature on mechanical characteristics of Si100-xGex alloys during indentation process,” Materials Science in Semiconductor Processing. 2020. link Times cited: 21 NOT USED (low confidence) T. Tran, T. Fang, V.-T. Nguyen, and V.-T. Pham, “Mechanical Responses of Single-Layer Borophene Under Nanoindentation Using Molecular Dynamics,” Proceedings of the 2nd Annual International Conference on Material, Machines and Methods for Sustainable Development (MMMS2020). 2020. link Times cited: 0 NOT USED (low confidence) J.-T. Wang, C. Chen, and H. Mizuseki, “Body centered cubic carbon BC14: An all-
sp3
bonded full-fledged pentadiamond,” Physical Review B. 2020. link Times cited: 12 NOT USED (low confidence) J. Christenson, M. Kroonblawd, R. Austin, L. Fried, and R. Phillips, “Simulating transient heat transfer in graphene at finite Knudsen number via the Boltzmann transport equation and molecular dynamics,” Physical Review B. 2020. link Times cited: 2 NOT USED (low confidence) X. Wang, Q. Q. Xu, Y. Zhang, and F.-hu Zhang, “Interaction mechanism between nanoparticles and ultra-smooth surface under effect of cavitation,” Precision Engineering-journal of The International Societies for Precision Engineering and Nanotechnology. 2020. link Times cited: 4 NOT USED (low confidence) Z. Liu, B. Lin, X. Liang, and A. Du, “Study on the effect of laser-assisted machining on tool wear based on molecular dynamics simulation,” Diamond and Related Materials. 2020. link Times cited: 15 NOT USED (low confidence) Z. Hao, Z. Lou, and Y. Fan, “Influence of anisotropy of nickel-based single crystal superalloy in atomic and close-to-atomic scale cutting,” Precision Engineering-journal of The International Societies for Precision Engineering and Nanotechnology. 2020. link Times cited: 13 NOT USED (low confidence) L. Lou, P. Chen, Z. Wang, S. Zhang, and F. Gao, “Cohesive energy measurement of van der Waals heterostructures by the shaft loaded blister test,” Extreme Mechanics Letters. 2020. link Times cited: 10 NOT USED (low confidence) M. Li, Z.-an Tian, Q. Xie, and K. Dong, “Structural Analysis for Tensile Behavior of Silicon-Carbon Core-Shell Nanotube,” Journal of Physics: Conference Series. 2020. link Times cited: 0 Abstract: This paper presents a molecular dynamics study on the tensil… read moreAbstract: This paper presents a molecular dynamics study on the tensile behavior of carbon nanotubes (CNT) with or without nanowire of Si (SiNW) encapsulated. Compared to the CNT without SiNW, the CNT with the SiNW (denoted as SiNW@CNT) shows a decreased tensile strength but an increased maximum tensile deformation rate. The micromechanisms of the different tensile behaviors were explored through the structural analysis including the radial distribution function, the bond angle distribution function, and the statistics of the polygon defects. The results showed that the C-C bond in the CNT under the maximum tensile deformation becomes longer and more uniform due to the van der Waals force between the SiNW and the CNT, which accounts for the change in the macroscopical tensile behavior. Moreover, it has been found that after tensile fracture, the CNT mainly form long chains consisting of triangle, pentagon, and heptagonal defects, while SiNW@CNT cannot form long chains due to the lack of triangular defects. These differences in the microstructures are probably because the C-C bonds in the SiNW@CNT can be strengthened by the SiNW. The results provide a better understanding of the fracture of the CNT and its nano composites, and have certain reference value for the application of the SiNW@CNT. read less NOT USED (low confidence) Q. Liu, Q. Liu, W. Yu, H. Luo, X. Ren, and S. Shen, “Tuning thermal resistance of SiC crystal/amorphous layered nanostructures via changing layer thickness,” Computational Materials Science. 2020. link Times cited: 2 NOT USED (low confidence) Q. Liu, L. Li, Y. Jeng, G. Zhang, C. Shuai, and X. Zhu, “Effect of interatomic potentials on modeling the nanostructure of amorphous carbon by liquid quenching method,” Computational Materials Science. 2020. link Times cited: 9 NOT USED (low confidence) W. Li, E. Hahn, X. Yao, T. Germann, B. Feng, and X. Zhang, “On the grain size dependence of shock responses in nanocrystalline sic ceramics at high strain rates,” Acta Materialia. 2020. link Times cited: 26 NOT USED (low confidence) A. Rohskopf, S. Wyant, K. Gordiz, H. R. Seyf, M. G. Muraleedharan, and A. Henry, “Fast & accurate interatomic potentials for describing thermal vibrations,” Computational Materials Science. 2020. link Times cited: 7 NOT USED (low confidence) J. Harrison, S. Stuart, and D. Brenner, “Atomic-Scale Simulation of Tribological and Related Phenomena,” Handbook of Micro/Nano Tribology. 2020. link Times cited: 3 NOT USED (low confidence) J. Zhan, X. Yao, and F. Han, “An approach of peridynamic modeling associated with molecular dynamics for fracture simulation of particle reinforced metal matrix composites,” Composite Structures. 2020. link Times cited: 23 NOT USED (low confidence) C. Woods et al., “Charge-polarized interfacial superlattices in marginally twisted hexagonal boron nitride,” Nature Communications. 2020. link Times cited: 113 NOT USED (low confidence) H. Zeighampour, Y. Beni, and Y. Kiani, “Electric Field Effects on Buckling Analysis of Boron–Nitride Nanotubes Using Surface Elasticity Theory,” International Journal of Structural Stability and Dynamics. 2020. link Times cited: 3 Abstract: In this paper, the axial buckling of boron nitride nanotubes… read moreAbstract: In this paper, the axial buckling of boron nitride nanotubes (BNNTs) is investigated by considering the effects of surface and electric field. To achieve this purpose, the surface elasticity theory... read less NOT USED (low confidence) X. Guo et al., “Study on subsurface layer of nano-cutting single crystal tungsten in different crystal orientations,” Applied Surface Science. 2020. link Times cited: 18 NOT USED (low confidence) H. Yang and B. Cao, “Effects and correction of angular momentum non-conservation in RNEMD for calculating thermal conductivity,” Computational Materials Science. 2020. link Times cited: 2 NOT USED (low confidence) Z.-rong Zhang, H.-fang Li, Y.-C. Ma, D. Luo, Z.-jiang Liu, and S. Lin, “Simulations of Formation of Nanostructure in Silicon Surface by Single Slow Highly Charged Ion,” Journal of Physics: Conference Series. 2020. link Times cited: 0 Abstract: To understand the mechanisms of surface erosion induced by s… read moreAbstract: To understand the mechanisms of surface erosion induced by slow highly-charged ion (SHCI) bombardment, the surface nanostructure formation in Si (111) surface by single Xe44+ ion was studied by using molecular-dynamics (MD) simulations, based on analyzing the multiple electron emission of the substrate. The time evolutions of the temperature, energy, pressure and density of the substrate have been systematically studied. The results show the bombardment of the incident SHCI resulting in an explosive event in the surface. A shock wave propagating at ~104 m/s is formed in the system during the initial 175 fs. After this initial shock, many particles are ejected from the surface since the extreme non-equilibrium of the system. And at t=370 fs, a crater-like nanostructure with diameter of ~40 Å and depth of ~18 Å is formed at the incident site. read less NOT USED (low confidence) J. Wang, X. Zhang, F. Fang, F. Xu, R. Chen, and Z.-qing Xue, “Study on nano-cutting of brittle material by molecular dynamics using dynamic modeling,” Computational Materials Science. 2020. link Times cited: 12 NOT USED (low confidence) Y. Zhang, A. Fan, M. An, W. Ma, and X. Zhang, “Thermal transport characteristics of supported carbon nanotube: Molecular dynamics simulation and theoretical analysis,” International Journal of Heat and Mass Transfer. 2020. link Times cited: 16 NOT USED (low confidence) K. Lozovoy et al., “Thickness-dependent surface energy and formation of epitaxial quantum dots,” Thin Solid Films. 2020. link Times cited: 7 NOT USED (low confidence) M. C. Barry, K. Wise, S. Kalidindi, and S. Kumar, “Voxelized Atomic Structure Potentials: Predicting Atomic Forces with the Accuracy of Quantum Mechanics Using Convolutional Neural Networks.,” The journal of physical chemistry letters. 2020. link Times cited: 9 Abstract: This paper introduces Voxelized Atomic Structure (VASt) pote… read moreAbstract: This paper introduces Voxelized Atomic Structure (VASt) potentials as a machine learning (ML) framework for developing interatomic potentials. The VASt framework utilizes a voxelized representation of the atomic structure directly as the input to a convolutional neural network (CNN). This allows for high fidelity representations of highly complex and diverse spatial arrangements of the atomic environments of interest. The CNN implicitly establishes the low-dimensional features needed to correlate each atomic neighborhood to its net atomic force. The selection of the salient features of the atomic structure (i.e., feature engineering) in the VASt framework is implicit, comprehensive, automated, scalable, and highly efficient. The calibrated convolutional layers learn the complex spatial relationships and multibody interactions that govern the physics of atomic systems with remarkable fidelity. We show that VASt potentials predict highly accurate forces on two phases of silicon carbide and the thermal conductivity of silicon over a range of isotropic strain. read less NOT USED (low confidence) S. S. Gandhi and P. Patra, “Consistent evaluation of continuum scale properties of two-dimensional materials: a case study on graphene,” Journal of Physics: Condensed Matter. 2020. link Times cited: 4 Abstract: We handshake statistical mechanics with continuum mechanics … read moreAbstract: We handshake statistical mechanics with continuum mechanics to develop a methodology for consistent evaluation of the continuum scale properties of two-dimensional materials. The methodology is tested on pristine graphene. Our scope is kept limited to elastic modulus, E, which has been reported to vary between 0.912 TPa and 7 TPa, Poisson’s ratio, ν, which has been reported to vary from being negative to a value as large as 0.46, and effective thickness, q, whose value varies between 0.75 Å and 3.41 Å. Such a large scatter arises due to inconsistent evaluation of these properties and making assumptions that may not be valid at atomistic scales. Our methodology combines three separate methods: uniaxial tension, equibiaxial tension, and flexural out-of-plane free vibrations of simply supported sheets, which, when used in tandem in molecular dynamics, can provide consistent values of E, ν and q. The only assumption made in the present study is the validity of the continuum scale thin plate vibration equation to represent the free vibrations of a graphene sheet. Our results suggest that—(i) graphene is auxetic in nature, (ii) E decreases with increasing size and temperature, and (iii) the effective thickness q increases with increasing size and temperature. Further, a robustness study of the computed mechanical properties shows consistent results, with differences varying between 1.4% and 6%. read less NOT USED (low confidence) H. Ghasemi, B. Abraham, J. Rutledge, and H. Yazdani, “Mechanical properties of C3N nanotubes,” Diamond and Related Materials. 2020. link Times cited: 3 NOT USED (low confidence) O. Farzadian, A. Razeghiyadaki, C. Spitas, and K. Kostas, “Phonon thermal rectification in hybrid graphene- C3N: a molecular dynamics simulation,” Nanotechnology. 2020. link Times cited: 10 Abstract: We apply the non-equilibrium molecular dynamics approach (NE… read moreAbstract: We apply the non-equilibrium molecular dynamics approach (NEMD) to study thermal rectification in a hybrid graphene-carbon nitride system ( G−C3N) under a series of positive and negative temperature gradients. In this study, the effects of temperature difference, between two baths (ΔT), and sample size on thermal rectification are investigated. Our simulation results indicate positive correlation between thermal rectification and temperature difference for ΔT > 60 K, and high thermal rectification values, up to around 50% for ΔT = 100 K. Furthermore, this behavior remains practically consistent among different sample lengths. The underlying mechanism leading to a preferable direction for phonons is calculated using phonon density of states (DOS) on both sides of the G−C3N interface, and the contributions of in-plane and out-of-plane phonon modes in total thermal rectification are also explored. read less NOT USED (low confidence) X. Luo et al., “Geometric analysis of shape transition for two-layer carbon–silicon nanotubes,” Scientific Reports. 2020. link Times cited: 0 NOT USED (low confidence) F. M. Colombari, A. Lozada-Blanco, K. Bernardino, W. R. Gomes, and A. F. de Moura, “Themis: A Software to Assess Association Free Energies via Direct Estimative of Partition Functions.” 2020. link Times cited: 2 Abstract: We present the program Themis - a computer implementation of… read moreAbstract: We present the program Themis - a computer implementation of a standard statistical mechanics framework to compute free energies, average energies and entropic contributions for association processes of two atom-based structures. The partition functions are computed analytically using a discrete grid in the phase space, whose size and degree of coarseness can be controlled to allow efficient calculations and to achieve the desired level of accuracy. With this strategy, applications ranging from molecular recognition, chiral discrimination, surface adsorption and even the interactions involving molecules in electronic excited states can be handled. read less NOT USED (low confidence) C. Pham, R. Lindsey, L. Fried, and N. Goldman, “Calculation of the detonation state of HN3 with quantum accuracy.,” The Journal of chemical physics. 2020. link Times cited: 14 Abstract: HN3 is a unique liquid energetic material that exhibits ultr… read moreAbstract: HN3 is a unique liquid energetic material that exhibits ultrafast detonation chemistry and a transition to metallic states during detonation. We combine the Chebyshev interaction model for efficient simulation (ChIMES) many-body reactive force field and the extended-Lagrangian multiscale shock technique molecular dynamics method to calculate the detonation properties of HN3 with the accuracy of Kohn-Sham density-functional theory. ChIMES is based on a Chebyshev polynomial expansion and can accurately reproduce density-functional theory molecular dynamics (DFT-MD) simulations for a wide range of unreactive and decomposition conditions of liquid HN3. We show that addition of random displacement configurations and the energies of gas-phase equilibrium products in the training set allows ChIMES to efficiently explore the complex potential energy surface. Schemes for selecting force field parameters and the inclusion of stress tensor and energy data in the training set are examined. Structural and dynamical properties and chemistry predictions for the resulting models are benchmarked against DFT-MD. We demonstrate that the inclusion of explicit four-body energy terms is necessary to capture the potential energy surface across a wide range of conditions. Our results generally retain the accuracy of DFT-MD while yielding a high degree of computational efficiency, allowing simulations to approach orders of magnitude larger time and spatial scales. The techniques and recipes for MD model creation we present allow for direct simulation of nanosecond shock compression experiments and calculation of the detonation properties of materials with the accuracy of Kohn-Sham density-functional theory. read less NOT USED (low confidence) M. Guziewski, A. D. Banadaki, S. Patala, and S. Coleman, “Application of Monte Carlo techniques to grain boundary structure optimization in silicon and silicon-carbide,” Computational Materials Science. 2020. link Times cited: 13 NOT USED (low confidence) Y. Gao et al., “Properties of the structural defects during SiC–crystal–induced crystallization on the solid–liquid interface,” Materials Science in Semiconductor Processing. 2020. link Times cited: 6 NOT USED (low confidence) H. Issa, A. Taherizadeh, and A. Maleki, “Atomistic-level study of the mechanical behavior of amorphous and crystalline silica nanoparticles,” Ceramics International. 2020. link Times cited: 7 NOT USED (low confidence) H. Qin, Y. Yan, H. Liu, J. Liu, Y.-W. Zhang, and Y. Liu, “Modified Timoshenko beam model for bending behaviors of layered materials and structures,” Extreme Mechanics Letters. 2020. link Times cited: 10 NOT USED (low confidence) T. C. Sagar, V. Chinthapenta, and M. Horstemeyer, “Effect of defect guided out-of-plane deformations on the mechanical properties of graphene,” Fullerenes, Nanotubes and Carbon Nanostructures. 2020. link Times cited: 5 Abstract: In this paper, nanoscale mechanical properties and failure b… read moreAbstract: In this paper, nanoscale mechanical properties and failure behavior of graphene with Stone-Wales defect concentration were investigated using molecular dynamics simulations with the latest ReaxFFC-2013 potential that can accurately capture bond breakages of graphitic compounds. The choice of interatomic potential plays an essential role in capturing the deformation mechanism accurately. Stable configuration of two-dimensional graphene experiences out-of-plane deformation leading to ripples and wrinkles in graphene. It is observed that the mechanical properties such as Young’s modulus, ultimate tensile strength, and the fracture strain are dependent on the out-of-plane deformation, temperature, defect concentration, defect orientation, defect layout and loading configuration. It is observed that the post transient phase non-homogenous ripples and wrinkles influence the mechanical properties at low and high defect concentrations, respectively. read less NOT USED (low confidence) Z. Hao, Z. Lou, and Y. Fan, “Study on phase transformation in cutting Ni-base superalloy based on molecular dynamics method,” Proceedings of the Institution of Mechanical Engineers, Part C: Journal of Mechanical Engineering Science. 2020. link Times cited: 4 Abstract: Nickel-based single crystal alloys are widely used in aerosp… read moreAbstract: Nickel-based single crystal alloys are widely used in aerospace and other important fields of national defense due to their excellent properties. Phase transformation occurs during high-speed cutting of nickel-based single crystal alloy, which seriously affects the surface quality. It is of great significance to carry out theoretical research on phase transformation for improving the machining quality of nickel-based alloy. In this paper, molecular dynamics method is used to study the nano-cutting of single crystal nickel-based alloy with silicon nitride ceramic tool. The mechanism of phase transformation and the effect of cutting speed on phase transformation in workpieces are studied in detail. The nano-cutting model is established. Morse potential functions for molecular dynamics simulation are calculated, and EAM and Tersoff potential functions are selected. The effect of cutting speed on phase transformation was studied by using radial distribution function, coordination number analysis, common neighbor analysis, and the deep reasons for the sharp change of lattice structure were analyzed from many aspects. Finally, in order to verify the universality of the research results and explore the new properties of compression, nano compression (the same strain rate as the nano cutting process) was simulated. The results show that the increase of cutting speed leads to the increase of hydrostatic stress, the increase of energy in crystal and the rise of cutting temperature. As a result, the change of lattice structure becomes more and more intense, and the conversion rate of different crystal structures increases greatly. read less NOT USED (low confidence) Q. Zhang et al., “Designing ultrahard nanostructured diamond through internal defects and interface engineering at different length scales,” Carbon. 2020. link Times cited: 10 NOT USED (low confidence) M. Orhan, A. Kinaci, and T. Çagin, “Acetonitrile confined in carbon nanotubes, part I: Structure, dynamic and transport properties,” Journal of Molecular Liquids. 2020. link Times cited: 1 NOT USED (low confidence) J. Cobeña-Reyes and M. Sahimi, “Rheology of water in small nanotubes.,” Physical review. E. 2020. link Times cited: 3 Abstract: The properties of water in confinement are very different fr… read moreAbstract: The properties of water in confinement are very different from those under bulk conditions. In some cases the melting point of ice may be shifted and one may find either ice, icelike water, or a state in which freezing is completely inhibited. Understanding the dynamics and rheology of water in confined media, such as small nanotubes, is of fundamental importance to the biological properties of micro-organisms at low temperatures, to the development of new devices for preserving DNA samples, and for other biological materials and fluids, lubrication, and development of nanostructured materials. We study rheology and dynamics of water in small nanotubes using extensive equilibrium and nonequilibrium molecular dynamics simulations. The results demonstrate that in strong confinement in nanotubes at temperatures significantly below and above bulk freezing temperature water behaves as a shear-thinning fluid at shear rates smaller than the inverse of the relaxation time in the confined medium. In addition, our results indicate the presence of regions in which the local density of water varies significantly over the same range of temperature in the nanotube. These findings may also have important implications for the design of nanofluidic systems. read less NOT USED (low confidence) H. Nobarani, N. Zhang, N. Zhang, and M. A. Zaeem, “Nanotwin-induced strengthening in silicon: A molecular dynamics study,” International Journal of Mechanical Sciences. 2020. link Times cited: 11 NOT USED (low confidence) M. Li, Q. Xie, X. Luo, and Z.-an Tian, “Molecular dynamics simulation of carbon nanotubes and silicon nanowire composites,” Modern Physics Letters B. 2020. link Times cited: 0 Abstract: The deformation behavior of the nanocomposite structure unde… read moreAbstract: The deformation behavior of the nanocomposite structure under tension was studied by molecular dynamics (MDs) simulation. This nanocomposite structure is called as SiNW@CNT, which is a silicon nano... read less NOT USED (low confidence) R. Lindsey, L. Fried, N. Goldman, and S. Bastea, “Active learning for robust, high-complexity reactive atomistic simulations.,” The Journal of chemical physics. 2020. link Times cited: 19 Abstract: Machine learned reactive force fields based on polynomial ex… read moreAbstract: Machine learned reactive force fields based on polynomial expansions have been shown to be highly effective for describing simulations involving reactive materials. Nevertheless, the highly flexible nature of these models can give rise to a large number of candidate parameters for complicated systems. In these cases, reliable parameterization requires a well-formed training set, which can be difficult to achieve through standard iterative fitting methods. Here, we present an active learning approach based on cluster analysis and inspired by Shannon information theory to enable semi-automated generation of informative training sets and robust machine learned force fields. The use of this tool is demonstrated for development of a model based on linear combinations of Chebyshev polynomials explicitly describing up to four-body interactions, for a chemically and structurally diverse system of C/O under extreme conditions. We show that this flexible training database management approach enables development of models exhibiting excellent agreement with Kohn-Sham density functional theory in terms of structure, dynamics, and speciation. read less NOT USED (low confidence) V.-T. Pham and T. Fang, “Anisotropic mechanical strength, negative Poisson’s ratio and fracture mechanism of borophene with defects,” Thin Solid Films. 2020. link Times cited: 16 NOT USED (low confidence) B. Mortazavi, E. Podryabinkin, S. Roche, T. Rabczuk, X. Zhuang, and A. Shapeev, “Machine-learning interatomic potentials enable first-principles multiscale modeling of lattice thermal conductivity in graphene/borophene heterostructures,” Materials Horizons. 2020. link Times cited: 81 Abstract: We highlight that machine-learning interatomic potentials tr… read moreAbstract: We highlight that machine-learning interatomic potentials trained over short AIMD trajectories enable first-principles multiscale modeling, bridging DFT level accuracy to the continuum level and empowering the study of complex/novel nanostructures. read less NOT USED (low confidence) J. Ryu, T. Oda, and H. Tanigawa, “Comparison and validation of the lattice thermal conductivity formulas used in equilibrium molecular dynamics simulations for binary systems,” Computational Materials Science. 2020. link Times cited: 1 NOT USED (low confidence) H. Tafrishi, S. Sadeghzadeh, R. Ahmadi, F. Molaei, F. Yousefi, and H. Hassanloo, “Investigation of tetracosane thermal transport in presence of graphene and carbon nanotube fillers––A molecular dynamics study,” Journal of energy storage. 2020. link Times cited: 33 NOT USED (low confidence) S. Kumari and A. Dutta, “Vacancy-mediated diffusion of atoms at Ge/Si interfaces: An atomistic perspective,” Materialia. 2020. link Times cited: 1 NOT USED (low confidence) Y.-T. Zheng, M. He, G. Cheng, Z.-xiao Zhang, F. Xuan, and Z. Wang, “Electrostatic-field-triggered stress in the lithiation of carbon-coated silicon,” Journal of Power Sources. 2020. link Times cited: 1 NOT USED (low confidence) J. Li, H.-cai Xie, W.-qing Meng, X.-ming Zhang, W. Zhao, and G. Shi, “Evolution mechanism of subsurface defect structure in particle micro-cutting iron–carbon alloy process,” Proceedings of the Institution of Mechanical Engineers, Part J: Journal of Engineering Tribology. 2020. link Times cited: 10 Abstract: In order to explore the evolution mechanism of subsurface de… read moreAbstract: In order to explore the evolution mechanism of subsurface defect structure of iron–carbon alloy workpiece during abrasive flow machining, the molecular dynamics model of SiC particle micro-cutting iron–carbon alloys was established. The Common Neighbor Analysis and Dislocation Extraction Algorithm were applied to identify the crystal structure and lattice defects. The distribution and evolution of defect structure during micro-cutting were analyzed and discussed, and the removal mechanism of workpiece material during micro-cutting was revealed. The results show that dislocations, stacking faults, V-shaped dislocation loops, atomic clusters, and point defect structures were generated in the subsurface layer of the iron–carbon alloy workpiece during micro-cutting. Under the action of extrusion and friction of SiC particles, some atoms in the shear slip zone were largely displaced. The plastic deformation occurred on the workpiece and formed chips and machining surfaces. Some atoms extended into the interior of the workpiece material, resulting in subsurface defect structure. After the completion of particle micro-cutting, some defect structures of the subsurface layer disappeared, and some defect structures remained in the subsurface of the workpiece in a certain form, forming a subsurface defect layer. read less NOT USED (low confidence) S. Sukhomlinov and M. Müser, “A mixed radial, angular, three-body distribution function as a tool for local structure characterization: Application to single-component structures.,” The Journal of chemical physics. 2020. link Times cited: 6 Abstract: A mixed radial, angular three-body distribution function g3(… read moreAbstract: A mixed radial, angular three-body distribution function g3(rBC, θABC) is introduced, which allows the local atomic order to be more easily characterized in a single graph than with conventional correlation functions. It can be defined to be proportional to the probability of finding an atom C at a distance rBC from atom B while making an angle θABC with atoms A and B, under the condition that atom A is the nearest neighbor of B. As such, our correlation function contains, for example, the likelihood of angles formed between the nearest and the next-nearest-neighbor bonds. To demonstrate its use and usefulness, a visual library for many one-component crystals is produced first and then employed to characterize the local order in a diverse body of elemental condensed-matter systems. Case studies include the analysis of a grain boundary, several liquids (argon, copper, and antimony), and polyamorphism in crystalline and amorphous silicon including that obtained in a tribological interface. read less NOT USED (low confidence) B. Mortazavi et al., “Efficient machine-learning based interatomic potentialsfor exploring thermal conductivity in two-dimensional materials,” Journal of Physics: Materials. 2020. link Times cited: 39 Abstract: It is well-known that the calculation of thermal conductivit… read moreAbstract: It is well-known that the calculation of thermal conductivity using classical molecular dynamics (MD) simulations strongly depends on the choice of the appropriate interatomic potentials. As proven for the case of graphene, while most of the available interatomic potentials estimate the structural and elastic constants with high accuracy, when employed to predict the lattice thermal conductivity they however lead to a variation of predictions by one order of magnitude. Here we present our results on using machine-learning interatomic potentials (MLIPs) passively fitted to computationally inexpensive ab-initio molecular dynamics trajectories without any tuning or optimizing of hyperparameters. These first-attempt potentials could reproduce the phononic properties of different two-dimensional (2D) materials obtained using density functional theory (DFT) simulations. To illustrate the efficiency of the trained MLIPs, we consider polyaniline C3N nanosheets. C3N monolayer was selected because the classical MD and different first-principles results contradict each other, resulting in a scientific dilemma. It is shown that the predicted thermal conductivity of 418 ± 20 W mK−1 for C3N monolayer by the non-equilibrium MD simulations on the basis of a first-attempt MLIP evidences an improved accuracy when compared with the commonly employed MD models. Moreover, MLIP-based prediction can be considered as a solution to the debated reports in the literature. This study highlights that passively fitted MLIPs can be effectively employed as versatile and efficient tools to obtain accurate estimations of thermal conductivities of complex materials using classical MD simulations. In response to remarkable growth of 2D materials family, the devised modeling methodology could play a fundamental role to predict the thermal conductivity. read less NOT USED (low confidence) H. Wei, H. Bao, and X. Ruan, “Genetic algorithm-driven discovery of unexpected thermal conductivity enhancement by disorder,” Nano Energy. 2020. link Times cited: 54 NOT USED (low confidence) Z. J. Choong, D. Huo, N. Ponon, R. Savidis, P. Degenaar, and A. O’Neill, “A novel hybrid technique to fabricate silicon-based micro-implants with near defect-free quality for neuroprosthetics application.,” Materials science & engineering. C, Materials for biological applications. 2020. link Times cited: 1 NOT USED (low confidence) F. Ojaghnezhad and H. Shodja, “Mechanics of carbon-coated silicon nanowire via second strain gradient theory,” European Journal of Mechanics A-solids. 2020. link Times cited: 6 NOT USED (low confidence) V.-T. Nguyen and T. Fang, “Molecular dynamics simulation of abrasive characteristics and interfaces in chemical mechanical polishing,” Applied Surface Science. 2020. link Times cited: 37 NOT USED (low confidence) J. Chen, L. Fang, K. Sun, and J. Han, “Creep behaviors of surface-modified silicon: A molecular dynamics study,” Computational Materials Science. 2020. link Times cited: 6 NOT USED (low confidence) S. Ajori, H. Parsapour, and R. Ansari, “A comprehensive analysis of the mechanical properties and fracture analysis of metallic glass nanocomposites reinforced by carbon nanotubes and Cu nanowires: A molecular dynamics study,” Mechanics of Advanced Materials and Structures. 2020. link Times cited: 9 Abstract: Reinforced by nanowires (NWs), carbon nanotubes (CNTs) and N… read moreAbstract: Reinforced by nanowires (NWs), carbon nanotubes (CNTs) and NW encapsulated CNT (NW@CNT), tensile behavior of various types of Cu-Zr based metallic glass (MG) nanocomposites are studied using molecular dynamics (MD) simulations. It is observed that pure two-toms alloy MG and the one reinforced with bigger CNT demonstrates higher tensile properties than other types of MGs. Further, it is observed that the ultimate strength of reinforced MGs with individual CNTs is slightly higher than that of NW@CNT reinforced analogous. In this case, it is noticed that reinforced three-atoms Cu-Zr MG nanocomposites including Ti atoms demonstrate the highest ultimate strength and strain. read less NOT USED (low confidence) M. Prieto-Depedro and I. Martín-Bragado, “Strain compensation by relieving defects in SiGe channel for FinFET technologies,” Semiconductor Science and Technology. 2020. link Times cited: 1 Abstract: Current generations of FinFET devices are incorporating SiGe… read moreAbstract: Current generations of FinFET devices are incorporating SiGe alloys as stressor material in channel regions in order to enhance hole mobility, drive current and channel conductivity. However, the presence of SiGe gives rise to new issues to be controlled during the device fabrication process, such as the strain retention or defectivity control, as they may seriously impact the quality of the strained SiGe channel and so the final device performance. The present work addresses the study of defect formation during the optimized integration of SiGe FinFETs for 10 nm technology nodes, aimed at determining the Ge threshold content for the nucleation of defects. Due to the relevance of atomistic models in determining the mechanisms and nature of defect formation, molecular dynamics (MD) simulations have been performed to emulate the FinFET fabrication process. The channel region is generated by removing a portion of the total volume of the Si substrate, further refilled with Si1 − xGex alloy to form the co-integrated FinFETs. After deposition, the presence of Ge induces a lattice distortion which is expected to be relieved by defect formation. Samples are annealed varying the Ge fraction, allowing to determine that threshold Ge content for the nucleation of defects is x = 0.27. MD provides also the nature of the formed defects, which have been suggested to be twinning developed at {111} planes and 60 ° misfit dislocations. Simulation results have been compared to experimental observations, both in good agreement. read less NOT USED (low confidence) N. Yang, W. Huang, and D. Lei, “Control of nanoscale material removal in diamond polishing by using iron at low temperature,” Journal of Materials Processing Technology. 2020. link Times cited: 14 NOT USED (low confidence) H. Mes-adi, Y. Lachtioui, K. Saadouni, and M. Mazroui, “Morphology and surface properties of Cu thin film on Si (001),” Thin Solid Films. 2020. link Times cited: 12 NOT USED (low confidence) J. Hickman and Y. Mishin, “Thermal conductivity and its relation to atomic structure for symmetrical tilt grain boundaries in silicon.,” Physical review materials. 2020. link Times cited: 9 Abstract: We perform a systematic study of thermal resistance/conducta… read moreAbstract: We perform a systematic study of thermal resistance/conductance of tilt grain boundaries (GBs) in Si using classical molecular dynamics. The GBs studied are naturally divided into three groups according to the structural units forming the GB core. We find that, within each group, the GB thermal conductivity strongly correlates with the excess GB energy. All three groups predict nearly the same GB conductivity extrapolated to the high-energy limit. This limiting value is close to the thermal conductivity of amorphous Si, suggesting similar heat transport mechanisms. While the lattice thermal conductivity decreases with temperature, the GB conductivity slightly increases. However, at high temperatures it turns over and starts decreasing if the GB structure undergoes a premelting transformation. Analysis of vibrational spectra of GBs resolved along different directions sheds light on the mechanisms of their thermal resistance. The existence of alternating tensile and compressive atomic environments in the GB core gives rise to localized vibrational modes, frequency gaps creating acoustic mismatch with lattice phonons, and anharmonic vibrations of loosely-bound atoms residing in open atomic environments. read less NOT USED (low confidence) R. Jana, J. von Lautz, S. M. Khosrownejad, W. Andrews, M. Moseler, and L. Pastewka, “Constitutive relations for plasticity of amorphous carbon,” Journal of Physics: Materials. 2020. link Times cited: 5 Abstract: We deform representative volume elements of amorphous carbon… read moreAbstract: We deform representative volume elements of amorphous carbon obtained from melt-quenches in molecular dynamics calculations using bond-order and machine learning interatomic potentials. A Drucker-Prager law with a zero-pressure flow stress of 41.2 GPa and an internal friction coefficient of 0.39 describes the deviatoric stress during flow as a function of pressure. We identify the mean coordination number as the order parameter describing this flow surface. However, a description of the dynamical relaxation of the quenched samples towards steady-state flow requires an additional order parameter. We suggest an intrinsic strain of the samples and present equations for its evolution. Our results provide insights into rehybridization and pressure dependence of friction between coated surfaces as well as routes towards the description of amorphous carbon in macroscale models of deformation. read less NOT USED (low confidence) G. Liang et al., “Molecular dynamics study of damage nearby silicon surface bombarded by energetic carbon ions,” Surface & Coatings Technology. 2020. link Times cited: 1 NOT USED (low confidence) X. Yu, H. Li, and J. Zhou, “Phonon thermal conductivity reduction in silicene nanotubes with isotope substitution,” RSC Advances. 2020. link Times cited: 5 Abstract: We used molecular dynamics simulations to study the isotopic… read moreAbstract: We used molecular dynamics simulations to study the isotopic doping effects on phonon thermal conductivity in armchair silicene nanotubes (SNTs). The phonon thermal conductivity of armchair SNTs can be effectively tuned with isotope substitution. Randomly and superlattice-structured isotopic doping can significantly reduce thermal conductivity. By analyzing the phonon vibrational spectrum, we reveal the underlying physical insights into the relationship between randomly isotopic doping concentration and thermal conductivity. Given the same doping concentration, the superlattice-structured doping method can reduce thermal conductivity more significantly than the disordered doping. For the isotopic superlattice doping method, the completion between the phonon interfacial scattering and phonon tunneling may cause minimum thermal conductivity at the critical period length. This study provides a possible means to effectively reduce the thermal conductivity of thermoelectric SNTs through isotopic doping engineering. read less NOT USED (low confidence) P. R. Chowdhury, C. Reynolds, A. Garrett, T. Feng, S. P. Adiga, and X. Ruan, “Machine learning maximized Anderson localization of phonons in aperiodic superlattices,” Nano Energy. 2020. link Times cited: 54 NOT USED (low confidence) B. Ram and H. Mizuseki, “C568: A new two-dimensional sp2-sp3 hybridized allotrope of carbon,” Carbon. 2020. link Times cited: 49 NOT USED (low confidence) T. Feng and X. Ruan, “Higher-order phonon scattering: advancing the quantum theory of phonon linewidth, thermal conductivity and thermal radiative properties.” 2020. link Times cited: 9 Abstract: Phonon scattering plays a central role in the quantum theory… read moreAbstract: Phonon scattering plays a central role in the quantum theory of phonon linewidth, which in turn governs important properties including infrared spectra, Raman spectra, lattice thermal conductivity, thermal radiative properties, and also significantly affects other important processes such as hot electron relaxation. Since Maradudin and Fein’s classic work in 1962, three-phonon scattering had been considered as the dominant intrinsic phonon scattering mechanism and has seen tremendous advances. However, the role of the higher-order four-phonon scattering had been persistently unclear and so was ignored. The tremendous complexity of the formalism and computational challenges stood in the way, prohibiting the direct and quantitative treatment of four-phonon scattering. In 2016, a rigorous four-phonon scattering formalism was developed, and the prediction was realized using empirical potentials. In 2017, the method was extended using first-principles calculated force constants, and the thermal conductivities of boron arsenides (BAs), Si and diamond were predicted. The predictions for BAs were later confirmed by several independent experiments. Four-phonon scattering has since been investigated in a range of materials and established as an important intrinsic scattering mechanism for thermal transport and radiative properties. Specifically, four-phonon scattering is important when the fourth-order scattering potential or phase space becomes relatively large. The former scenario includes: (i) nearly all materials when the temperature is high; (ii) strongly anharmonic (low thermal conductivity) materials, including most rocksalt compounds, halides, hydrides, chalcogenides and oxides. The latter scenario includes: (iii) materials with large acoustic–optical phonon band gaps, such as XY compounds with a large atomic mass ratio between X and Y; (iv) twodimensional materials with reflection symmetry, such as single-layer graphene, single-layer boron nitride and carbon nanotubes; and (v) phonons with a large read less NOT USED (low confidence) L. Zhao, M. Alam, J. Zhang, R. Janisch, and A. Hartmaier, “Amorphization-governed elasto-plastic deformation under nanoindentation in cubic (3C) silicon carbide,” Ceramics International. 2020. link Times cited: 43 NOT USED (low confidence) F. Saiz, “An ab initio study on liquid silicon carbide,” Journal of Physics and Chemistry of Solids. 2020. link Times cited: 6 NOT USED (low confidence) Z. Wang, Z. Duan, Y. Dong, and Y. Zhang, “Molecular dynamics simulation of lateral ultrasonic excitation in atomic-scale friction,” Materials Research Express. 2020. link Times cited: 5 Abstract: The normal and lateral (in the sliding direction) vibration … read moreAbstract: The normal and lateral (in the sliding direction) vibration can achieve ‘dynamic superlubricity’ at the atomic scale which has been studied and proved by other researchers. In this study, we have found that the lateral excitation (perpendicular to the sliding direction) which has rarely been studied before can also reduce the average friction force greatly. By utilizing the tip path on the interaction potential energy surface and plotting the interaction potential energy as a function of support position, we elucidated the reason of dynamic superlubricity caused by lateral excitation. The details of the lateral excitation at the atomic scale friction have been demonstrated by molecular dynamics simulations and numerical computation based on the Prandtl-Tomlinson model. This study can increase the understanding of the ultrasonic vibration excitation at atomic scale friction. read less NOT USED (low confidence) X. Qu and J. Gu, “Phonon transport and thermal conductivity of diamond superlattice nanowires: a comparative study with SiGe superlattice nanowires,” RSC Advances. 2020. link Times cited: 5 Abstract: Due to the coupling of a superlattice's longitudinal pe… read moreAbstract: Due to the coupling of a superlattice's longitudinal periodicity to a nanowire's radial confinement, the phonon transport properties of superlattice nanowires (SLNWs) are expected to be radically different from those of pristine nanowires. In this work, we present the comparative investigation of phonon transport and thermal conductivity between diamond SLNWs and SiGe SLNWs by using molecular dynamics simulations. In the case of period length ∼ 25 Å, the thermal conductivities of diamond SLNWs and SiGe SLNWs both increase linearly with increasing the period number, which implies the wave-like coherent phonons dominate the heat transport of SLNWs. In the case of period length ∼ 103 Å, the thermal conductivity of SiGe SLNWs is length-independent with increasing the period number, indicating that the particle-like incoherent phonons in SiGe SLNWs control the heat transport, because the phonon–phonon scattering causes phonons to not retain their phases and the coherence is destroyed before the reflection at interfaces. However in diamond SLNWs the coherent phonons still dominate heat conduction and the thermal conductivity is length-dependent, because the mean free path of phonon–phonon scattering in diamond SLNWs is much longer. The spatial distribution of phonon localized modes further supports these opinions. These results are helpful not only to understand the coherent and incoherent phonon transport, but also to modulate the thermal conductivity of SLNWs. read less NOT USED (low confidence) Y. Zhou, B. Chen, H. He, B. Li, and X. Wang, “Displacement Cascades in Monocrystalline Silicon: Effects of Temperature, Strain, and PKA Energy,” Nuclear Technology. 2020. link Times cited: 3 Abstract: With large-scale molecular dynamics, we investigate displace… read moreAbstract: With large-scale molecular dynamics, we investigate displacement cascades in monocrystalline silicon with regard to the effects of temperature, strain, and primary knock-on atom energy on defect generation and evolution. With temperature increasing, both the thermal spike region and the peak defect count increase, while the effect of temperature on the surviving defect number is negligible. Nevertheless, higher temperature shows negative effect on clustering of vacancy. The effects of uniaxial strain on defect production and clustering is negligible, while its hydrostatic counterpart is evident. With the increment of hydrostatic strain, both the peak and surviving defect count increase (decrease) under tensile (compressive) hydrostatic loading. Meantime, tensile hydrostatic strain will promote defect clustering. More defects and larger defect clusters are produced at higher energy. Otherwise, interstitials are hard to form clusters under different conditions. read less NOT USED (low confidence) A. Galashev, O. Rakhmanova, and Y. Zaikov, “Kinetic test of a doped silicene-graphite anode element in a computer experiment,” Journal of Physics: Conference Series. 2020. link Times cited: 0 Abstract: The stability of the system “bi-layer silicene on the graphi… read moreAbstract: The stability of the system “bi-layer silicene on the graphite substrate” is studied in the molecular dynamics simulation. Silicene sheets are doped with phosphorus, and graphite sheets are doped with nitrogen. Lithium ion moves along a silicene channel with a gap in the range of 0.6–0.8 nm. The time for the ion to pass the channel and leave it decreases with an increase in the channel gap. There is a tendency of the silicene sheets roughness growth with an increase in the gap between silicene sheets (except, 0.75 nm). Doping phosphorus and nitrogen atoms stabilize the silicene and graphite structure. read less NOT USED (low confidence) D. Dickel and M. Daw, “First-principles electronic structure in second-moment calculation of mode frequencies: Failure of quasiharmonic approximation in silicon,” Physical Review B. 2019. link Times cited: 1 NOT USED (low confidence) S. Takamoto, S. Izumi, and J. Li, “TeaNet: universal neural network interatomic potential inspired by iterative electronic relaxations,” ArXiv. 2019. link Times cited: 29 NOT USED (low confidence) J. Luo et al., “Segregation phenomena of As in GaAs at different cooling rates during solidification,” Materials Science in Semiconductor Processing. 2019. link Times cited: 4 NOT USED (low confidence) A. Shargh and N. Abdolrahim, “Molecular dynamics simulation of structural changes in single crystalline silicon nitride nanomembrane,” Ceramics International. 2019. link Times cited: 8 NOT USED (low confidence) M. Mirakhory, M. M. Khatibi, and T. Rabczuk, “Attenuation of nanoparticle mass detection by single layer graphene sheets via mono-vacancy and plate geometry,” Diamond and Related Materials. 2019. link Times cited: 2 NOT USED (low confidence) N. Wei, S. Li, Y. Zhang, J. Chen, Y. Chen, and J. Zhao, “Thermal rectification of graphene on substrates with inhomogeneous stiffness,” Carbon. 2019. link Times cited: 17 NOT USED (low confidence) A. Senturk, A. Oktem, and A. E. S. Konukman, “Investigation of interfacial thermal resistance of hybrid graphene/hexagonal boron nitride,” International Journal of Mechanics and Materials in Design. 2019. link Times cited: 9 NOT USED (low confidence) Y. Katoh and L. Snead, “Silicon carbide and its composites for nuclear applications – Historical overview,” Journal of Nuclear Materials. 2019. link Times cited: 106 NOT USED (low confidence) X. Zhou, W. Bu, S. Song, F. Sansoz, and X. Huang, “Multiscale modeling of interfacial mechanical behaviours of SiC/Mg nanocomposites,” Materials & Design. 2019. link Times cited: 22 NOT USED (low confidence) Y. Xu et al., “A molecular dynamic study of nano-grinding of a monocrystalline copper-silicon substrate,” Applied Surface Science. 2019. link Times cited: 30 NOT USED (low confidence) M. R. Arshee, S. Adnan, M. Motalab, and P. Bose, “Inherent mechanical properties of bilayer germanene coupled by covalent bonding,” RSC Advances. 2019. link Times cited: 12 Abstract: Germanene, a two-dimensional buckled hexagonal structure of … read moreAbstract: Germanene, a two-dimensional buckled hexagonal structure of germanium atoms, has attractive mechanical, optical, thermal and electronic features. Recently it has been reported that covalent bonding between two monolayer germanene sheets leads to the integration of intrinsic magnetism and band gap opening that makes it attractive to future nanoelectronics. In order to use the captivating features of this structure, its mechanical characterization needs to be studied. In this study, molecular dynamics simulations have been performed using optimized Tersoff potential to analyze the effect of chirality, temperature and strain rate on the uniaxial tensile properties of this structure. This study suggests that bonded bilayer germanene shows higher mechanical strength compared to monolayer germanene. Uniaxial loading in the armchair direction shows higher fracture strength and strain compared to the zigzag direction which is contrary to the monolayer germanene. It also reports that with increasing temperature, both the fracture strength and strain of the structure decrease. It has been found that at a higher strain rate, the material exhibits higher fracture strength and strain. Mechanical properties and fracture mechanisms of defected structures have also been reported below the curie temperature. Moreover, the interlayer shear characteristics of the bilayer structure have been looked into. These results will provide significant insight to the investigation of this structure as a potential nano-electronics substitute. read less NOT USED (low confidence) L. Ma, T. Hao, and Z. Hossain, “Size-dependent toughness and strength in defective 3C-SiC nanowires,” Journal of Applied Physics. 2019. link Times cited: 3 Abstract: This paper presents an atomistic understanding of effective … read moreAbstract: This paper presents an atomistic understanding of effective toughness and strength in defective 3C-SiC nanowires of different diameters. We consider a set of high-symmetry vacancy defect clusters and employ a combination of density functional theory and molecular dynamics simulations to calculate stress in the nanowires, using an energy-based approach that does not require use of any macroscopic geometric information of the nanowire. Our results suggest that for defect-free nanowires, cracks nucleate from one of the corners of the hexagonal cross section, whereas for defective nanowires—regardless of the size of the defect core—cracks nucleate from the edge of the defect core. With increasing diameter, both strength and toughness increase in defective or defect-free nanowires. Furthermore, defects alter the size-dependent effective toughness and strength of the nanowire: the larger the size of the defect, the stronger the size-dependence of effective toughness and strength. A single vacancy in a 8.0 nm diameter nanowire reduces effective toughness and strength by around 16.5% and 3.4%, respectively. As diameter approaches ∞, effective stiffness approaches the bulk behavior—whereas neither strength nor toughness approaches the behavior of the bulk. This is primarily because of the presence of the surface and associated sustained stress-localization in the nanowire. Effective toughness and strength are, therefore, controlled by the local critical events and not by the macroscopic features of the nanowire. Additionally, both toughness and strength decrease nonlinearly with increasing temperature due to thermal softening of the material—and this thermal softening is, however, weakly dependent on the size of the defective regime. read less NOT USED (low confidence) Z. Chaker, M. Salanne, J. Delaye, and T. Charpentier, “NMR shifts in aluminosilicate glasses via machine learning.,” Physical chemistry chemical physics : PCCP. 2019. link Times cited: 13 Abstract: Machine learning (ML) approaches are investigated for the pr… read moreAbstract: Machine learning (ML) approaches are investigated for the prediction of nuclear magnetic resonance (NMR) parameters in aluminosilicate glasses, for which NMR has proven to be a cutting-edge method over the last decade. DFT computations have emerged as a new dimension for complementing these NMR methods although suffering from severe limitations in terms of size, time and computational resources consumption. While previous approaches tend to use DFT-GIPAW calculations for the prediction of NMR parameters in glassy systems, we propose to employ ML methods, characterized by a speed similar to that of classical molecular dynamics while the accuracy of ab initio methods can be reached. We design ML procedures to predict the isotropic magnetic shielding (σiso) for different multicomponent relevant glass compositions. The ML predictions of σiso deviate from DFT-GIPAW calculations, when including relaxed and room-temperature structures, by 0.7 ppm for 29Si (1.0% of the total span of the calculated ) and 1.5 ppm for 17O (1.9%) in SiO2 glasses, 1.4 ppm for 23Na (1.5%) in Na2O-SiO2 and 1.5 ppm for 27Al (2.1%) in Al2O3-Na2O-SiO2 systems. We compare the performances obtained for a set of three descriptors suitable for encoding atomic local environments information (atom-centered representations) together with seven popular ML algorithms with a focus on the simple (but robust) linear ridge regression (LRR) and the popular smooth overlap of atomic positions (SOAP) descriptor. read less NOT USED (low confidence) N. Liao, B. Zheng, M. Zhang, and W. Xue, “Numerical approach to evaluate performance of porous SiC5/4O3/2 as potential high temperature hydrogen gas sensor,” International Journal of Hydrogen Energy. 2019. link Times cited: 16 NOT USED (low confidence) Y.-T. Zheng, M. He, G. Cheng, Z.-xiao Zhang, F. Xuan, and Z. Wang, “The mechanism of carbon-addition-enhanced electrochemical kinetics,” Chemical Physics Letters. 2019. link Times cited: 4 NOT USED (low confidence) O. V. Мykhailenko et al., “Дизайн, синтез та біологічні властивості комплексів С 60 фулерену з лактатами деяких металів.” 2019. link Times cited: 2 Abstract: The search for new materials based on carbon structures such… read moreAbstract: The search for new materials based on carbon structures such as fullerenes opens prospects for their use in various application areas, including medicine. That is why the design of supramolecular complexes based on С 60 and a natural molecule of the lactic acid (and its derivatives) is a necessary initial step for predicting thermodynamic and kinetic possibilities of synthesizing supramolecular structures and their physical and chemical characterization. The creation of an aqueous form of nanocomplexes and their in vivo testing is the final stage of this research. The design with the ММ+molecular mechanics method, РМ3 semi-empirical quantum-chemical method and Monte-Carlo method allowed us to find the “С 60 –lactate” to be stable enough at elevated temperatures (up to ~ 550 K). This provides for reliable and stable synthesis of the complexes under regular conditions. There have been synthesized and separated lactates of magnesium, calcium, strontium, zinc and barium. Their chemical structures have been proved by IR-spectroscopy and X-ray structural analysis. Ultrasonic dispergation allowed us to obtain water-soluble complexes of fullerene С 60 with the lactates of the above metals. Their structures have been proved by UV-spectroscopy. The collective in vivo results of mechanical and kinetic investigations of muscle fatigue caused by physical activity indicate that after injecting the С 60 –lactate, the skeletal muscles are still functioning and the time for their rehabilitation reduces. There has been determined the protective effect of these nanocomplexes on contractile dynamics of ischemic injury of the soleus muscle. The investigation has shown that intramuscular injections of separate components and the С 60 –lactate nanocomplex demonstrate the significant protective effect due to generation of maximum response strength caused by increased muscle fatigue. Finally, there has been proved the protective role of water-soluble derivatives of C 60 in neurodegeneration and the increased hypoxia tolerance of a neural tissue. This offers new opportunities in therapy and preventive treatment of ischemic pathologies. read less NOT USED (low confidence) E. Mahdavi, R. Khaledialidusti, and A. Barnoush, “Rheological properties of super critical CO2 with Al2O3: Material type, size and temperature effect,” Journal of Molecular Liquids. 2019. link Times cited: 10 NOT USED (low confidence) Y. Chu et al., “Thermal boundary resistance predictions with non-equilibrium Green’s function and molecular dynamics simulations,” Applied Physics Letters. 2019. link Times cited: 7 Abstract: The non-equilibrium Green's function (NEGF) method with… read moreAbstract: The non-equilibrium Green's function (NEGF) method with Buttiker probe scattering self-energies is assessed by comparing its predictions for the thermal boundary resistance with molecular dynamics (MD) simulations. For simplicity, the interface of Si/heavy-Si is considered, where heavy-Si differs from Si only in the mass value. With Buttiker probe scattering parameters tuned against MD in homogeneous Si, the NEGF-predicted thermal boundary resistance quantitatively agrees with MD for wide mass ratios. Artificial resistances that plagued NEGF calculations in homogeneous systems so far are absent in the present NEGF approach. Spectral transport information result from NEGF without transformations in its natural representation. The spectral results show that the scattering between different phonon modes plays a crucial role in thermal transport across interfaces. read less NOT USED (low confidence) J. Carrete et al., “Phonon transport across crystal-phase interfaces and twin boundaries in semiconducting nanowires.,” Nanoscale. 2019. link Times cited: 12 Abstract: We combine state-of-the-art Green's-function methods an… read moreAbstract: We combine state-of-the-art Green's-function methods and nonequilibrium molecular dynamics calculations to study phonon transport across the unconventional interfaces that make up crystal-phase and twinning superlattices in nanowires. We focus on two of their most paradigmatic building blocks: cubic (diamond/zinc blende) and hexagonal (lonsdaleite/wurtzite) polytypes of the same group-IV or III-V material. Specifically, we consider InP, GaP and Si, and both the twin boundaries between rotated cubic segments and the crystal-phase boundaries between different phases. We reveal the atomic-scale mechanisms that give rise to phonon scattering in these interfaces, quantify their thermal boundary resistance and illustrate the failure of common phenomenological models in predicting those features. In particular, we show that twin boundaries have a small but finite interface thermal resistance that can only be understood in terms of a fully atomistic picture. read less NOT USED (low confidence) M. Kashiwagi et al., “Scalable Multi-nanostructured Silicon for Room-Temperature Thermoelectrics,” ACS Applied Energy Materials. 2019. link Times cited: 16 Abstract: Thermoelectric conversion is capable of converting heat dire… read moreAbstract: Thermoelectric conversion is capable of converting heat directly to electricity. However, actual implementations of thermoelectric devices are still limited with the leading bottleneck being the costs of materials and device integration, which calls for thermoelectric materials based on standard semiconductors with sufficient figure of merit (ZT) at room temperature. Bulk silicon crystal comes on the top of the list; however, the ZT even with nanostructuring has been limited due to its high thermal conductivity. Here, we have realized nanostructured silicon material with ZT larger than 0.3 at room temperature by a scalable process consisting of metal-assisted chemical etching and plasma-activated sintering. The material structure is highly complex being composed of randomly distributed nanograins, nanopores, and metal nanoprecipitates with hierarchical sizes, which significantly reduces thermal conductivity without appreciably sacrificing electrical conductivity. It is further identified by detailed exper... read less NOT USED (low confidence) V. Nguyen, D.-T. Nguyen, and M.-Q. Le, “Bending of boron nitride nanotubes: An atomistic study,” Mechanics of Advanced Materials and Structures. 2019. link Times cited: 5 Abstract: ABSTRACT The present work investigates through molecular dyn… read moreAbstract: ABSTRACT The present work investigates through molecular dynamics finite element method with Tersoff potential the buckling behavior of boron nitride (BN) armchair and zigzag nanotubes under bending. The critical bending buckling angle, moment, and curvature are studied and discussed with respect to the tube length-diameter ratios from 10 to 50. Effects of a Stone-Wales defect in the middle tube on the bending behavior are also examined. The bending buckling mechanism is governed by the local instabilities and bond breaking in the compressive zone of the tubes. Results are useful for the design of nanocomposites and nano-devices with BN nanotubes. read less NOT USED (low confidence) Y. Zhang, Q. Pei, Z. Sha, and Y.-W. Zhang, “A molecular dynamics study of the mechanical properties of h-BCN monolayer using a modified Tersoff interatomic potential,” Physics Letters A. 2019. link Times cited: 30 NOT USED (low confidence) K. Bu, J.-T. Wang, Z.-zhen Li, H. Mizuseki, and Y. Kawazoe, “A superhard orthorhombic carbon with all six-membered-ring in sp3 bonding networks,” Physics Letters A. 2019. link Times cited: 14 NOT USED (low confidence) F. Mehralian, R. D. Firouz-Abadi, and M. Norouzi, “Molecular dynamics study on axial elastic modulus of carbon nanoropes,” Archives of Civil and Mechanical Engineering. 2019. link Times cited: 1 NOT USED (low confidence) S. M. Mofidi, H. N. Pishkenari, M. Ejtehadi, and A. Akimov, “Role of Graphene Surface Ripples and Thermal Vibrations in Molecular Dynamics of C60,” The Journal of Physical Chemistry C. 2019. link Times cited: 13 Abstract: Nanocars are artificial molecular machines with chassis, axl… read moreAbstract: Nanocars are artificial molecular machines with chassis, axles, and wheels designed for nanoscale transport at materials’ surfaces. Understanding the dependence of surface dynamics of nanocars on the substrate’s physicochemical properties is critical to the design of the transport properties of such man-made nanoscale devices. Among the multitude of potential substrates for the nanotransporters, graphene exhibits intrinsic ripples on its surface, which may affect the surface dynamics of nanocars. In this work, we report our molecular dynamics study of motion of C60, a popular nanocar wheel, on the graphitic substrates with systematically controllable surface ripples. We find that surface ripples increase the amplitude of fullerene fluctuation in the direction normal to surface, which leads to decrease of the desorption temperature from 650 K on a double-layer graphite system with less ripples to 550 K on single-layer graphene with more ripples. The surface diffusion of C60 follows the rare hops mechanism ... read less NOT USED (low confidence) T. Saha, A. Bhowmick, T. Oda, T. Miyauchi, and N. Fujii, “Influence of layered nanofillers on the mechanical properties and thermal degradation of polyacrylicester polymer: Theoretical and experimental investigations,” Composites Part B: Engineering. 2019. link Times cited: 20 NOT USED (low confidence) Y. Liu, Y. Cheng, R. Hu, and X. Luo, “Nanoscale thermal cloaking by in-situ annealing silicon membrane,” Physics Letters A. 2019. link Times cited: 22 NOT USED (low confidence) B. Fu, K. D. Parrish, H.-Y. Kim, G. Tang, and A. McGaughey, “Phonon confinement and transport in ultrathin films,” Physical Review B. 2019. link Times cited: 12 Abstract: Thermal transport by phonons in films with thicknesses of le… read moreAbstract: Thermal transport by phonons in films with thicknesses of less than 10 nm is investigated in a soft system (Lennard-Jones argon) and a stiff system (Tersoff silicon) using two-dimensional lattice dynamics calculations and the Boltzmann transport equation. This approach uses a unit cell that spans the film thickness, which removes approximations related to the finite cross-plane dimension required in typical three-dimensional-based approaches. Molecular dynamics simulations are performed to obtain finite-temperature structures for the lattice dynamics calculations and to predict thermal conductivity benchmarks. Thermal conductivity decreases with decreasing film thickness until the thickness reaches four unit cells (2.1 nm) for argon and three unit cells (1.6 nm) for silicon. With a further decrease in film thickness, thermal conductivity plateaus in argon while it increases in silicon. This unexpected behavior, which we identify as a signature of phonon confinement, is a result of an increased contribution from low-frequency phonons, whose density of states increases as the film thickness decreases. Phonon mode-level analysis suggests that confinement effects emerge below thicknesses of ten unit cells (5.3 nm) for argon and six unit cells (3.2 nm) for silicon. Thermal conductivity predictions based on the bulk phonon properties combined with a boundary scattering model do not capture the low thickness behavior. To match the two-dimensional lattice dynamics and molecular dynamics predictions for larger thicknesses, the three-dimensional lattice dynamics calculations require a finite specularity parameter that in some cases approaches unity. These findings point to the challenges associated with interpreting experimental thermal conductivity measurements of ultrathin silicon films, where surface roughness and a native oxide layer impact phonon transport. read less NOT USED (low confidence) Z. Chang, Z. Xiao, M. Lin, and L. Zhou, “A molecular dynamics study of <111> growth of silicon from melt under stress,” Physica B: Condensed Matter. 2019. link Times cited: 3 NOT USED (low confidence) A. Galashev and K. Ivanichkina, “Computational investigation of a promising Si-Cu anode material.,” Physical chemistry chemical physics : PCCP. 2019. link Times cited: 21 Abstract: The lack of suitable anode materials is a limiting factor in… read moreAbstract: The lack of suitable anode materials is a limiting factor in the creation of a new generation of lithium-ion batteries. We use the molecular dynamics method to explore the processes of intercalation and deintercalation of lithium in the anode element, represented by two sheets of silicene, on a copper substrate. It is shown that the presence of vacancy-type defects in silicene increases the electrode capacitance, which becomes especially significant with bivacancies. However, the enlargement of defect sizes reduces the strength of the silicene channel during cycling and in the presence of hexavacancies it suffers a strong deformation and becomes impassable for Li+ ions during intercalation. The presence of a copper substrate greatly changes the electronic properties of silicene. The calculated DOS spectrum shows that silicon on a copper substrate acquires metallic properties. To analyze the structure we used the statistical geometry method. Lithium atoms in the channel are predominantly irregularly packed. However, part of the Li atoms are located above the hexagonal Si cells. The average stresses in silicene, calculated with limiting filling of the channel with lithium, are usually small. However, in the case of silicene with monovacancies, the tensile stress reaches 12.5% of the ultimate tensile stress. Evaluation of the dynamic stress observed in silicene during cycling shows that its value is less than 5% of the ultimate tensile stress. read less NOT USED (low confidence) J. Moon, R. Hermann, M. Manley, A. Alatas, A. Said, and A. Minnich, “Thermal acoustic excitations with atomic-scale wavelengths in amorphous silicon,” Physical Review Materials. 2019. link Times cited: 18 Abstract: The vibrational properties of glasses remain a topic of inte… read moreAbstract: The vibrational properties of glasses remain a topic of intense interest due to several unresolved puzzles, including the origin of the Boson peak and the mechanisms of thermal transport. Inelastic scattering measurements have revealed that amorphous solids support collective acoustic excitations with low THz frequencies despite the atomic disorder, but these frequencies are well below most of the thermal vibrational spectrum. Here, we report the observation of acoustic excitations with frequencies up to 10 THz in amorphous silicon. The excitations have atomic-scale wavelengths as short as 6 A and exist well into the thermal vibrational frequencies. Simulations indicate that these high-frequency waves are supported due to the high group velocity and monatomic composition of a-Si, suggesting that other glasses with these characteristics may also exhibit such excitations. Our findings demonstrate that a substantial portion of thermal vibrational modes in amorphous materials can still be described as a phonon gas despite the lack of atomic order. read less NOT USED (low confidence) B. Liu, Z. Xu, C. Chen, K. Pang, Y. Wang, and Q. Ruan, “Effect of tool edge radius on material removal mechanism of single-crystal silicon: Numerical and experimental study,” Computational Materials Science. 2019. link Times cited: 25 NOT USED (low confidence) S. Deng et al., “Thermal boundary resistance measurement and analysis across SiC/SiO2 interface,” Applied Physics Letters. 2019. link Times cited: 20 Abstract: Silicon Carbide (SiC) is a typical material for third-genera… read moreAbstract: Silicon Carbide (SiC) is a typical material for third-generation semiconductor. The thermal boundary resistance (TBR) of 4H-SiC/SiO2 interface, was investigated by both experimental measurements and theoretical calculations. The structure of 4H-SiC/SiO2 was characterized by using transmission electron microscopy and X-ray diffraction. The TBR is measured as 8.11*10-8 m2K/W by 3-omega method. Furthermore, the diffuse mismatch model was employed to predict the TBR of different interfaces which is in good agreement with measurements. Heat transport behavior based on phonon scattering perspective was also discussed to understand the variations of TBR across different interfaces. Besides, the intrinsic thermal conductivity of SiO2 thin films (200~1,500 nm in thickness) on 4H-SiC substrates was measured by 3 omega procedure, as 1.42 W/mK at room temperature. It is believed the presented results could provide useful insights on the thermal management and heat dissipation for SiC devices. read less NOT USED (low confidence) H. Nguyen, “Graphene layer of hybrid graphene/hexagonal boron nitride model upon heating,” Carbon Letters. 2019. link Times cited: 9 NOT USED (low confidence) S. Li, Z. X. Guo, and J.-wen Ding, “Interface thermal transport of graphene-based intralayer heterostructures,” Physica B: Condensed Matter. 2019. link Times cited: 6 NOT USED (low confidence) Z. Wu, W. Liu, L. Zhang, and S. Lim, “Amorphization and Dislocation Evolution Mechanisms of Single Crystalline 6H-SiC,” Materials Engineering eJournal. 2019. link Times cited: 67 Abstract: The amorphization and dislocation evolution mechanisms of a … read moreAbstract: The amorphization and dislocation evolution mechanisms of a single crystal 6H-SiC were systematically investigated by using nano-indentation, high-resolution transmitted electron microscope (HRTEM), molecular dynamics (MD) simulations and the generalized stacking fault (GSF) energy surface analysis. Two major plastic deformation mechanisms of 6H-SiC under nano-indentation were revealed by HRTEM, i.e., (1) an amorphization region near the residual indentation mark, and (2) dislocations below the amorphization region in both the basal and prismatic planes. MD results showed that the amorphization process corresponds to the first “pop-in” event of the indentation load-displacement curve, while the dislocation nucleation and propagation are related to the consequent “pop-in” events. The amorphization is confirmed to achieve via an initial transformation from wurtzite structure to an intermediate structure, and then a further amorphization process. read less NOT USED (low confidence) Z. Liu et al., “Molecular dynamics simulation of thermal excitation-induced dispersion of carbon nanotubes,” Chemical Physics Letters. 2019. link Times cited: 5 NOT USED (low confidence) S. Winczewski and J. Rybicki, “Anisotropic mechanical behavior and auxeticity of penta-graphene: Molecular statics/molecular dynamics studies,” Carbon. 2019. link Times cited: 16 NOT USED (low confidence) H. Huang et al., “Rock-salt and helix structures of silver iodides under ambient conditions,” National Science Review. 2019. link Times cited: 8 Abstract: Many different phase structures have been discovered for sil… read moreAbstract: Many different phase structures have been discovered for silver iodides. The β and γ phases were found to be the most common ones at ambient conditions, while the rock-salt phase was found to be stable under pressures between 400 MPa and 11.3 GPa. Recently, the α phase was demonstrated to be stable under ambient conditions when the particle sizes were reduced to below 10 nm. However, no other phase has been reported to be stable for silver iodides under ambient conditions. Rock-salt and helix structures have been found to be stable under ambient conditions in this study. The structures have been characterized by elemental mapping, Raman scattering, and high-resolution transmission electron microscopy. The stabilities of these structures were also confirmed by molecular dynamics and density functional theory. read less NOT USED (low confidence) L. Yang, K. Cai, J. Shi, Y. Xie, and Q. Qin, “Nonlinear dynamic behavior of a clamped–clamped beam from BNC nanotube impacted by fullerene,” Nonlinear Dynamics. 2019. link Times cited: 12 NOT USED (low confidence) C. Teijeiro, T. Hammerschmidt, R. Drautz, and G. Sutmann, “Optimized parallel simulations of analytic bond-order potentials on hybrid shared/distributed memory with MPI and OpenMP,” The International Journal of High Performance Computing Applications. 2019. link Times cited: 3 Abstract: Analytic bond-order potentials (BOPs) allow to obtain a high… read moreAbstract: Analytic bond-order potentials (BOPs) allow to obtain a highly accurate description of interatomic interactions at a reasonable computational cost. However, for simulations with very large systems, the high memory demands require the use of a parallel implementation, which at the same time also optimizes the use of computational resources. The calculations of analytic BOPs are performed for a restricted volume around every atom and therefore have shown to be well suited for a message passing interface (MPI)-based parallelization based on a domain decomposition scheme, in which one process manages one big domain using the entire memory of a compute node. On the basis of this approach, the present work focuses on the analysis and enhancement of its performance on shared memory by using OpenMP threads on each MPI process, in order to use many cores per node to speed up computations and minimize memory bottlenecks. Different algorithms are described and their corresponding performance results are presented, showing significant performance gains for highly parallel systems with hybrid MPI/OpenMP simulations up to several thousands of threads. read less NOT USED (low confidence) Q. Qiao, C. Liu, W. Gao, and L. Huang, “Graphene oxide model with desirable structural and chemical properties,” Carbon. 2019. link Times cited: 22 NOT USED (low confidence) V. Vijayaraghavan and L. Zhang, “Nanomechanics of single layer hybrid boron nitride–carbon nanosheets: A molecular dynamics study,” Computational Materials Science. 2019. link Times cited: 12 NOT USED (low confidence) S. Gur, M. Sadat, G. Frantziskonis, S. Bringuier, L. Zhang, and K. Muralidharan, “The effect of grain-size on fracture of polycrystalline silicon carbide: A multiscale analysis using a molecular dynamics-peridynamics framework,” Computational Materials Science. 2019. link Times cited: 23 NOT USED (low confidence) O. Penkov et al., “Ion-beam irradiation of DLC-based nanocomposite: Creation of a highly biocompatible surface,” Applied Surface Science. 2019. link Times cited: 15 NOT USED (low confidence) S. Sahoo, “An approach toward multiscale modeling of direct metal laser sintering process,” Metal Powder Report. 2019. link Times cited: 8 NOT USED (low confidence) A. Kipper and L. B. D. Silva, “Non equilibrium molecular dynamics simulation study of thermal conductivity in doped graphene nanoribbons,” Physica B: Condensed Matter. 2019. link Times cited: 8 NOT USED (low confidence) H. Jin, H. Duan, and J. Shi, “Reversing rotation of a nanomotor by introducing a braking BNC nanotube,” Computational Materials Science. 2019. link Times cited: 7 NOT USED (low confidence) A. Galashev and K. Ivanichkina, “Computer Test of a New Silicene Anode for Lithium‐Ion Batteries,” ChemElectroChem. 2019. link Times cited: 29 NOT USED (low confidence) Z. Hui and Y. Chang, “Phonon heat transport properties of graphene based on molecular dynamics simulations and lattice dynamics,” International Journal of Modern Physics B. 2019. link Times cited: 1 Abstract: To choose an ideal method to study the phonon properties of … read moreAbstract: To choose an ideal method to study the phonon properties of graphene, the results of thermal conductivity (TC) of graphene computed using the equilibrium molecular dynamics (EMD), reverse nonequilibrium molecular dynamics (RNEMD) and direct nonequilibrium molecular dynamics (DNEMD) with Tersoff potential are compared, and we find that all of them are very close to each other. While two of them have been compared in the past, there is a lack of comparison of the three methods. Eventually, we choose the Green–Kubo method to study the temperature dependence of TC in graphene and find that the [Formula: see text] diverges with the system temperature T as [Formula: see text]T[Formula: see text] with [Formula: see text] and [Formula: see text] for the direction of armchair and zigzag, respectively, which is in reasonable agreement with the one in recent theoretical and experimental researches. To gain further insight into the TC, the phonon dispersion and the phonon density of states (PDOS), which depend on evaluating the eigenvalues and the eigenvectors of dynamical matrix, are calculated for graphene with dimensions of 30 × 30 unit cell by a combination of EMD simulations and lattice dynamics calculations. read less NOT USED (low confidence) N. Inui, “Molecular dynamics simulations of Lennard-Jones systems confined between suspended nanoscale graphene sheets.,” Physical review. E. 2019. link Times cited: 3 Abstract: The distribution of particles interacting with Lennard-Jones… read moreAbstract: The distribution of particles interacting with Lennard-Jones potentials and confined between parallel graphene sheets is investigated by molecular dynamics simulations. For small separation distances, the particles are densely localized in the central region between the graphene sheets. However, two high-density layers appear as the separation distance increases. The particle distribution also depends on the temperature, tensile force of the graphene sheets, and the initial configuration, and various configurations are observed for large separation. For example, an argon cluster initially located between the graphene sheets changes shape, and a bridge between the parallel walls is formed at low temperature. In contrast to the Lennard-Jones system sandwiched between rigid walls, the flexibility of the graphene sheets strongly affects the distribution of particles in the direction perpendicular to the graphene sheets. read less NOT USED (low confidence) J. Gu, L. Huang, and W. Shi, “Atomic simulations of effect on thermal conductivity of ion-irradiated graphene,” Physica B: Condensed Matter. 2019. link Times cited: 1 NOT USED (low confidence) C. Huang, X. Peng, B. Yang, S. Weng, Y. Zhao, and T. Fu, “Grain size dependence of tensile properties in nanocrystalline diamond,” Computational Materials Science. 2019. link Times cited: 17 NOT USED (low confidence) K. Fujisawa et al., “Facile 1D graphene fiber synthesis from an agricultural by-product: A silicon-mediated graphenization route,” Carbon. 2019. link Times cited: 13 NOT USED (low confidence) B. Liu and K. Zhou, “Recent progress on graphene-analogous 2D nanomaterials: Properties, modeling and applications,” Progress in Materials Science. 2019. link Times cited: 208 NOT USED (low confidence) T. Liang, P. Zhang, P. Yuan, S. Zhai, and D. Yang, “A molecular dynamics study on the thermal conductivities of single- and multi-layer two-dimensional borophene,” Nano Futures. 2019. link Times cited: 23 Abstract: Borophene, a new two-dimensional (2D) structure of boron ato… read moreAbstract: Borophene, a new two-dimensional (2D) structure of boron atoms, has aroused a great deal of attention and research recently. However, research on the thermal conductivity of borophene is still scarce, although this is critical for the potential application of borophene. Accordingly, we investigate the in-plane and cross-plane thermal conductivities of single- and multi-layer borophene using the non-equilibrium molecular dynamics simulations. The effect on the thermal conductivity with respect to sample length, temperature, layer number and mechanical strain is systematically examined. It is found that the in-plane thermal conductivity of infinite-size single-layer borophene exhibits strong anisotropy, which is calculated to be 102.5 ± 1.9 (along the zigzag direction) and 233.3 ± 2.1 W m−1K−1 (along the armchair direction). Notably, we found that both the in-plane and cross-plane thermal conductivities of borophene are affected by temperature variations, which is the same as other 2D materials. Surprisingly, the in-plane thermal conductivity of multi-layer borophene is insensitive to the layer number. This is attributed to the out-of-plane flexural phonons mode vibration being maintained by the intrinsic bi-layer structure (buckled structure), resulting in a negligible effect of interlayer vdW interactions of the multi-layer structure on the out-of-plane flexural phonons mode. In particular, the cross-plane strain was found to be effective in modulating the cross-plane thermal conductivity of multi-layer borophene in our research. Our findings here are of significance for understanding the thermal transport behavior of single- and multi-layer borophene and promoting their future applications in thermal management and nanodevices. read less NOT USED (low confidence) S. Ju and J. Shiomi, “Materials Informatics for Heat Transfer: Recent Progresses and Perspectives,” Nanoscale and Microscale Thermophysical Engineering. 2019. link Times cited: 38 Abstract: ABSTRACT With the advances in materials and integration of e… read moreAbstract: ABSTRACT With the advances in materials and integration of electronics and thermoelectrics, the demand for novel crystalline materials with ultimate high/low thermal conductivity is increasing. However, search for optimal thermal materials is a challenge due to the tremendous degrees of freedom in the composition and structure of crystal compounds and nanostructures, and thus empirical search would be exhausting. Materials informatics, which combines the simulation/experiment with machine learning, is now gaining great attention as a tool to accelerate the search of novel thermal materials. In this review, we discuss recent progress in developing materials informatics (MI) for heat transport: the exploration of crystals with high/low-thermal conductivity via high-throughput screening, and nanostructure design for high/low-thermal conductance using the Bayesian optimization and Monte Carlo tree search. The progresses show that the MI methods are useful for designing thermal functional materials. We end by addressing the remaining issues and challenges for further development. read less NOT USED (low confidence) N. Nayir, A. V. van Duin, and S. Erkoç, “Development of a ReaxFF Reactive Force Field for Interstitial Oxygen in Germanium and Its Application to GeO2/Ge Interfaces,” The Journal of Physical Chemistry C. 2019. link Times cited: 10 Abstract: We developed the ReaxFF force field parameters for Ge/O/H in… read moreAbstract: We developed the ReaxFF force field parameters for Ge/O/H interactions, specifically targeted for the applications of Ge/GeO2 interfaces and O-diffusion in bulk Ge. The original training set, taken... read less NOT USED (low confidence) Y. Pang et al., “Exfoliated Graphene Leads to Exceptional Mechanical Properties of Polymer Composite Films.,” ACS nano. 2019. link Times cited: 50 Abstract: Polymers with superior mechanical properties are desirable i… read moreAbstract: Polymers with superior mechanical properties are desirable in many applications. In this work, polyethylene (PE) films reinforced with exfoliated thermally reduced graphene oxide (TrGO) fabricated using a roll-to-roll hot-drawing process are shown to have outstanding mechanical properties. The specific ultimate tensile strength and Young's modulus of PE/TrGO films increased monotonically with the drawing ratio and TrGO filler fraction, reaching up to 3.2 ± 0.5 and 109.3 ± 12.7 GPa, respectively, with a drawing ratio of 60× and a very low TrGO weight fraction of 1%. These values represent by far the highest reported to date for a polymer/graphene composite. Experimental characterizations indicate that as the polymer films are drawn, TrGO fillers are exfoliated, which is further confirmed by molecular dynamics (MD) simulations. Exfoliation increases the specific area of the TrGO fillers in contact with the PE matrix molecules. Molecular dynamics simulations show that the PE-TrGO interaction is stronger than the PE-PE intermolecular van der Waals interaction, which enhances load transfer from PE to TrGO and leverages the ultrahigh mechanical properties of TrGO. read less NOT USED (low confidence) M. Khalkhali, A. Rajabpour, and F. Khoeini, “Thermal transport across grain boundaries in polycrystalline silicene: A multiscale modeling,” Scientific Reports. 2019. link Times cited: 21 NOT USED (low confidence) A. Senturk, A. Oktem, and A. E. S. Konukman, “Investigation of interfacial thermal resistance of hybrid graphene/hexagonal boron nitride,” International Journal of Mechanics and Materials in Design. 2019. link Times cited: 0 NOT USED (low confidence) V. Choyal, V. Choyal, and S. I. Kundalwal, “Effect of atom vacancies on elastic and electronic properties of transversely isotropic boron nitride nanotubes: A comprehensive computational study,” Computational Materials Science. 2019. link Times cited: 37 NOT USED (low confidence) A. A. Alhossary, “Accurately accelerating drug design workflow.” 2018. link Times cited: 0 NOT USED (low confidence) G. Hwang et al., “Pressure-driven phase transitions and reduction of dimensionality in 2D silicon nanosheets,” Nature Communications. 2018. link Times cited: 12 NOT USED (low confidence) X. Dong and Y. Shin, “Predictions of thermal conductivity and degradation of irradiated SiC/SiC composites by materials-genome-based multiscale modeling,” Journal of Nuclear Materials. 2018. link Times cited: 16 NOT USED (low confidence) Y. Feng, J. Zhu, and D. Tang, “Dependence of carbon nanotube array-silicon interface thermal conductance on array arrangement and filling fraction,” Applied Thermal Engineering. 2018. link Times cited: 6 NOT USED (low confidence) M. N. Esfahani and B. E. Alaca, “Surface Stress Effect on Silicon Nanowire Mechanical Behavior: Size and Orientation Dependence,” Mechanics of Materials. 2018. link Times cited: 14 NOT USED (low confidence) J. Yi, L. Wang, and Y. Zhang, “Vibration of two-dimensional hexagonal boron nitride,” Theoretical and Applied Mechanics Letters. 2018. link Times cited: 3 NOT USED (low confidence) Q. Ding, N. Ding, L. Liu, N. Li, and C. M. L. Wu, “Investigation on mechanical performances of grain boundaries in hexagonal boron nitride sheets,” International Journal of Mechanical Sciences. 2018. link Times cited: 17 NOT USED (low confidence) F. Elahi, L. Ma, and Z. Hossain, “Heterogeneity governs diameter-dependent toughness and strength in SiC nanowires,” Physical Review B. 2018. link Times cited: 10 NOT USED (low confidence) P. Chen, Z. Zhang, T. An, H. Yu, and F. Qin, “Generation and distribution of residual stress during nano-grinding of monocrystalline silicon,” Japanese Journal of Applied Physics. 2018. link Times cited: 14 Abstract: Residual stress generated in grinding process of monocrystal… read moreAbstract: Residual stress generated in grinding process of monocrystalline silicon can cause the wafer warpage, and difficulties in subsequent processes such as holding and scribing. It can also lead to the formation of cracks and the occurrence of corrosion, which is harmful for electrical performance of silicon component. In this study, with the method of step-wire wet etching, the phase transformation and distribution of residual stress in ground silicon wafer were examined by confocal laser micro-Raman spectroscopy. As the etching depth going down, the residual stress exhibits in the trends of decreasing of compressive stress and following a scatter distribution of tensile stress. During the nano-grinding processes of monocrystalline silicon, the generation mechanism of residual stress is computed by a series of the molecular dynamic (MD) simulation. Subsurface damage (SSD) in the form of phase-transformed silicon is observed, and the depth of SSD varies by the depth of cut. The volume shrinkage of phase-transformed silicon is also studied to explain the grinding mechanism and the reason for inducing residual stress of ground silicon. By adopted the Stony theory and volume shrinkage rate of amorphous phase from MD results, a theoretical model is established to determine the trend of compressive stress in subsurface of ground silicon. read less NOT USED (low confidence) C. Hu, V. Michaud-Rioux, W. Yao, and H. Guo, “Moiré Valleytronics: Realizing Dense Arrays of Topological Helical Channels.,” Physical review letters. 2018. link Times cited: 13 Abstract: We propose a general and robust platform, the moiré valleytr… read moreAbstract: We propose a general and robust platform, the moiré valleytronics, to realize high-density arrays of 1D topological helical channels in real materials at room temperature. We demonstrate the idea using a long-period 1D moiré pattern of graphene on hBN by first-principles calculation. Through calculating the Berry curvature and topological charge of the electronic structure associated with various local graphene/hBN stackings in the moiré pattern, it is revealed that the helical channel arrays originate intrinsically from the periodic modulation of the local topological orders by the moiré pattern. For a freestanding wavelike moiré pattern, two groups of helical channel arrays are spatially separated out of plane, validating the structural robustness of the moiré topology. The generality and experimental feasibility of moiré valleytronics are demonstrated by investigating a broad range of moiré systems. read less NOT USED (low confidence) H. Zhang and B. Zhang, “Fast crack kinking manipulated by atomic hoop stress in monolayer hexagonal boron nitride strip,” Computational Materials Science. 2018. link Times cited: 5 NOT USED (low confidence) X. Nie, L. Zhao, S. Deng, and Y. Zhang, “Molecular dynamic study on crossover of equilibrium time of conduction for silicon/silicon and silicon/silicon carbide pairs on nanoscale,” International Communications in Heat and Mass Transfer. 2018. link Times cited: 3 NOT USED (low confidence) J. Li, W.-qing Meng, K. Dong, X.-ming Zhang, and W. Zhao, “Numerical Analysis of Solid-Liquid Two-Phase Abrasive Flow in Microcutting Polycrystalline Materials Based on Molecular Dynamics,” International Journal of Precision Engineering and Manufacturing. 2018. link Times cited: 14 NOT USED (low confidence) J. Li, W.-qing Meng, K. Dong, X.-M. Zhang, and W. Zhao, “Numerical Analysis of Solid-Liquid Two-Phase Abrasive Flow in Microcutting Polycrystalline Materials Based on Molecular Dynamics,” International Journal of Precision Engineering and Manufacturing. 2018. link Times cited: 1 NOT USED (low confidence) C. Shao, Q. Rong, N. Li, and H. Bao, “Understanding the mechanism of diffuse phonon scattering at disordered surfaces by atomistic wave-packet investigation,” Physical Review B. 2018. link Times cited: 27 NOT USED (low confidence) V. Singla, A. Verma, and A. Parashar, “A molecular dynamics based study to estimate the point defects formation energies in graphene containing STW defects,” Materials Research Express. 2018. link Times cited: 21 Abstract: In the present article, molecular dynamics based simulations… read moreAbstract: In the present article, molecular dynamics based simulations have been performed to estimate the vacancy formation and displacement threshold energies in a defective graphene nanosheet. Pristine graphene is a hypothetical concept, as its synthesis often results in a nanosheet containing various geometrical and atomic defects such as grain boundaries and dislocations. Stone Thrower Wales, a type of defect that are either present in grain boundaries or generated through experimental means such as ion beam and electron beam irradiation techniques. The simulations performed in this investigation shall help in the characterization and determining suitability of defective graphene with STW defects for radiation shielding purposes and future space research. Moreover, this study will be valuable in bringing new insights for guiding and modifying the design of graphene-based nanomaterials exposed to radiation environments. read less NOT USED (low confidence) X. C. Tang et al., “Strengthening effects of encapsulating graphene in SiC particle-reinforced Al-matrix composites,” Computational Materials Science. 2018. link Times cited: 25 NOT USED (low confidence) J. Wang, X. Zhang, F. Fang, F. Fang, and R. Chen, “A numerical study on the material removal and phase transformation in the nanometric cutting of silicon,” Applied Surface Science. 2018. link Times cited: 50 NOT USED (low confidence) B. Javvaji, P. Budarapu, M. Paggi, X. Zhuang, and T. Rabczuk, “Fracture Properties of Graphene‐Coated Silicon for Photovoltaics,” Advanced Theory and Simulations. 2018. link Times cited: 14 Abstract: The possibility of replacing the conductive gridline deposit… read moreAbstract: The possibility of replacing the conductive gridline deposited on solar cells by highly electrically conductive graphene is opening new perspectives for the future generation of photovoltaics. Besides enhanced electric performance, graphene can also have a role in the resistance of silicon against cracking. Here, the influence of depositing graphene on the silicon surface, on the fracture properties of silicon, is investigated. To pin‐point the influence of graphene, fracture properties estimated from molecular dynamics simulations of three different cases in uniaxial tension are compared. In the first case, the fracture properties of silicon alone are estimated in relation to different initial defect sizes. Second, the same simulations are repeated by depositing graphene on the silicon surface. Atomic interactions in the composite structure are modeled using the combined adaptive inter‐molecular reactive empirical bond order (AIREBO) and Tersoff potential functions. Improvement of about 780% in the Young's modulus of silicon is achieved after coating with graphene. Furthermore, to study the influence of realistic initial defects in graphene, a third set of simulations is considered by repeating the previous tests but with initial cracks through graphene and silicon. Predictions show that graphene can be highly beneficial in strengthening and repairing micro‐cracked silicon to decrease electrical power losses caused by cracks. read less NOT USED (low confidence) J. Amraei, J. E. Jam, B. Arab, and R. Firouz-Abadi, “Effect of interphase zone on the overall elastic properties of nanoparticle-reinforced polymer nanocomposites,” Journal of Composite Materials. 2018. link Times cited: 24 Abstract: In the current work, the effect of interphase region on the … read moreAbstract: In the current work, the effect of interphase region on the mechanical properties of polymer nanocomposites reinforced with nanoparticles is studied. For this purpose, a closed-form interphase model as a function of radial distance based on finite-size representative volume element is suggested to estimate the mechanical properties of particle-reinforced nanocomposites. The effective Young’s and shear moduli of thermoplastic polycarbonate-based nanocomposites for a wide range of sizes and volume fractions of silicon carbide nanoparticles are investigated using the proposed interphase model and molecular dynamics simulations. In order to investigate the effect of particle size, several unit cells of the same volume fraction, but with different particle radii have been considered. The micromechanics-based homogenization results are in good agreement with the results of molecular dynamics simulations for all models. This study demonstrates that the suggested micromechanical interphase model has the capacity to estimate effective mechanical properties of polymer-based nanocomposites reinforced with spherical inclusions. read less NOT USED (low confidence) M. P. de Pedro, “Multiscale modeling of junction processing in FDSOI and FinFET devices for 10nm node technology and below.” 2018. link Times cited: 0 Abstract: A medida que el tamano de los transistores se reduce, aproxi… read moreAbstract: A medida que el tamano de los transistores se reduce, aproximandose a los limites fisicos de la miniaturizacion, nuevos problemas y retos surgen durante los procesos de fabricacion. Como consecuencia, potenciales sustitutos de las tecnologias convencionales basadas en Si comienzan a aparecer, como por ejemplo las arquitecturas tridimensionales (FinFETs) o la introduccion de tenicas de estres para mejorar el rendimiento mediante la introduccion de canales de alta movilidad. Todos estos requisitos implican la formacion de uniones activas en el regimen de baja temperatura, y precisamente en este ambito el recrecimiento epitaxial solido se ha evidenciado como la mejor opcion para el procesado de dispositivos avanzados para tecnologias de nodos inferiores a 10 nm. De acuerdo a este contexto, el presente trabajo se centra fundamentalmente en la modelizacion atomistica del recrecimiento solido epitaxial (SPER) de Si y aleaciones de SiGe. Para ello se emplean diferentes tecnicas de simulacion en el marco de la multiescala abarcando un amplio espectro de escalas de tiempo y tamano, incluyendo: ab initio, Molecular Dynamics (MD), Lattice Kinetic Monte Carlo (LKMC), Object Kinetic Monte Carlo (OKMC) and Finite Element Methods (FEM). La dependencia de la formacion de defectos con la presencia de estres en Si es estudiada en detalle, incorporando el calculo de patrones de estres debidos a la expansion volumetrica de la fase amorfa usando metodos FEM. La presencia de dichos patrones es responsable de la formacion de dislocaciones en el punto de encuentro de los frentes de recristalizacion, como se evidencia en los resultados obtenidos mediante calculos de MD. Estos ultimos son incluidos en el modelo de LKMC, permitiendo la simulacion de muestras mas realistas, aportando asi una explicacion fisica a los mecanismos de formacion de defectos y su fuerte dependencia con los patrones de estres. Ademas, las aleaciones de SiGe son incluidas en el presente trabajo. Se realiza un estudio en profundidad de la dependencia de las energias de activacion de SPER con la composicion de Ge de la aleacion, utilizando para ello tenicas de MD. Se observa un comportamiento anomalo alejado del esperado ya que el perfil de energias no varia de forma monotona entre los valores de Si y Ge. Se introducen en este punto metodos de Nudged Elastic Band Calculations para confirmar los resultados, extrayendose dos factores dentro del perfil de energias: la tasa de recristalizacion en si misma y un segundo termino debido a la diferencia de longitud de enlace por la presencia de atomos de Ge. Finalmente, como aplicacion reciente de los estudios reportados hasta este punto se incluye el modelado de FinFET de SiGe, en la que se determina la composicion limitante para la formacion de defectos durante los procesos de recocido de la estructura. ----------ABSTRACT---------- As device downscaling is on pace to reach the physical limits of miniaturization, new problems and challenges arise during the fabrication process. Consequently, potential replacements for conventional Si-based technologies have to be explored, such as 3D arquitectures (FinFETs) or the introduction of strain engineering techniques for further performance enhancement due to high mobility channels (SiGe as stressor material). Their manufacturing requirements involve highly activated and abrupt junction formation at the low temperature regime, and the Solid Phase Epitaxial Regrowth has been evidenced as the best option for processing advanced technology nodes of 10 nm and below. Relying on this context, the present manuscript is mainly focused at modeling the SPER of Si and SiGe alloys using a multiscale approach including: ab initio, Molecular Dynamics (MD), Lattice Kinetic Monte Carlo (LKMC), Object Kinetic Monte Carlo (OKMC) and Finite Element methods (FEM). The defect formation dependence on stress in Si is accounted by computing the strain pattern due to the volumetric expansion of the α-phase by using FEM methods, which are then evidenced as responsible for nucleation dislocation at the pinch off point of the two moving fronts during recrystallization by using MD simulations. Extracted results are finally extended into a LKMC model allowing to simulate realistic sample sizes, providing a physical explanation of the defect formation mechanisms and their strong dependence on the presence of strain patterns. Moreover, SiGe alloys are considered, and the Ge composition dependence of SPER activation energies is modeled by using MD, extracting an anomalous behavior as the profile does not vary monotonically between values of pure Si and Ge. Nudged Elastic Band calculations are performed to confirm the two-part behavior of the SPER activation energies: the SPER rate itself and a second extra term due to the bond length difference present in the alloy. Finally, as a novel application of strained SiGe layers, the SiGe channel FinFET devices are modeled in terms of defect formation when increasing the Ge content in the alloy. read less NOT USED (low confidence) C. Huang et al., “Effects of strain rate and annealing temperature on tensile properties of nanocrystalline diamond,” Carbon. 2018. link Times cited: 33 NOT USED (low confidence) R. Abadi, M. Izadifar, M. Sepahi, N. Alajlan, and T. Rabczuk, “Computational modeling of graphene nanopore for using in DNA sequencing devices,” Physica E: Low-dimensional Systems and Nanostructures. 2018. link Times cited: 8 NOT USED (low confidence) J. Harrison, J. Schall, S. Maskey, P. Mikulski, M. T. Knippenberg, and B. Morrow, “Review of force fields and intermolecular potentials used in atomistic computational materials research,” Applied Physics Reviews. 2018. link Times cited: 99 Abstract: Molecular simulation is a powerful computational tool for a … read moreAbstract: Molecular simulation is a powerful computational tool for a broad range of applications including the examination of materials properties and accelerating drug discovery. At the heart of molecular simulation is the analytic potential energy function. These functions span the range of complexity from very simple functions used to model generic phenomena to complex functions designed to model chemical reactions. The complexity of the mathematical function impacts the computational speed and is typically linked to the accuracy of the results obtained from simulations that utilize the function. One approach to improving accuracy is to simply add more parameters and additional complexity to the analytic function. This approach is typically used in non-reactive force fields where the functional form is not derived from quantum mechanical principles. The form of other types of potentials, such as the bond-order potentials, is based on quantum mechanics and has led to varying levels of accuracy and transferability. When selecting a potential energy function for use in molecular simulations, the accuracy, transferability, and computational speed must all be considered. In this focused review, some of the more commonly used potential energy functions for molecular simulations are reviewed with an eye toward presenting their general forms, strengths, and weaknesses.Molecular simulation is a powerful computational tool for a broad range of applications including the examination of materials properties and accelerating drug discovery. At the heart of molecular simulation is the analytic potential energy function. These functions span the range of complexity from very simple functions used to model generic phenomena to complex functions designed to model chemical reactions. The complexity of the mathematical function impacts the computational speed and is typically linked to the accuracy of the results obtained from simulations that utilize the function. One approach to improving accuracy is to simply add more parameters and additional complexity to the analytic function. This approach is typically used in non-reactive force fields where the functional form is not derived from quantum mechanical principles. The form of other types of potentials, such as the bond-order potentials, is based on quantum mechanics and has led to varying levels of accuracy and transferabilit... read less NOT USED (low confidence) P. Ferrando-Villalba et al., “Impact of pore anisotropy on the thermal conductivity of porous Si nanowires,” Scientific Reports. 2018. link Times cited: 20 NOT USED (low confidence) M.-Q. Le, “Fracture of monolayer germanene: A molecular dynamics study,” International Journal of Modern Physics B. 2018. link Times cited: 12 Abstract: Molecular dynamics simulations with Tersoff potential were p… read moreAbstract: Molecular dynamics simulations with Tersoff potential were performed to study the fracture properties of monolayer germanene at 300 K. The two-dimensional (2D) Young’s modulus, 2D tensile strength and axial strain at the tensile strength of pristine monolayer germanene are about 36.0 and 37.5 N/m; 5.1 and 4.6 N/m; 21.4 and 15.9%, in the zigzag and armchair directions, respectively. Griffith theory was applied to compute the critical stress intensity factor. Compared to monolayer graphene, the critical stress intensity factor of monolayer germanene is much smaller. Fracture pattern and effects of the initial crack length on the fracture properties are also studied. Results are useful for future design and applications of this 2D material. read less NOT USED (low confidence) T. Liang, P. Zhang, P. Yuan, and S. Zhai, “In-plane thermal transport in black phosphorene/graphene layered heterostructures: a molecular dynamics study.,” Physical chemistry chemical physics : PCCP. 2018. link Times cited: 32 Abstract: Heterostructures, which stack two different two-dimensional … read moreAbstract: Heterostructures, which stack two different two-dimensional (2D) materials vertically together, have recently attracted tremendous attention. However, as one of their members, the in-plane thermal conductivity of black phosphorene/graphene (BP/GE) heterostructures, which plays a key role in determining their functional properties, is still unknown. In this work, we use non-equilibrium molecular dynamics (NEMD) simulations to study the in-plane thermal conductivities of BP/GE heterostructures and BP in BP/GE heterostructures. The effect on in-plane thermal conductivity with respect to the size effect (sample length), coupling strength, and hydrogen coverage is systematically examined. It is found that the in-plane thermal conductivity of infinite-size BP/GE bilayer heterostructures exhibits strong anisotropy, which is calculated to be 206.61 ± 6.35 (along the zigzag direction) and 51.02 ± 3.72 W m-1 K-1 (along the armchair direction). In addition, we found that the enhancement of the coupling strength increases the in-plane thermal conductivity of BP/GE heterostructures and BP in BP/GE heterostructures, which may be due to an increase in phonon group velocities in BP and a stronger phonon coupling between BP and GE. In our research, hydrogenation has also been found to enhance the thermal conductivity of BP in heterostructures. The present study is expected to provide guidance for the study of the in-plane thermal transport properties in other 2D heterostructures, and it is of significance for understanding the thermal transport behavior of BP/GE heterostructures and BP in heterostructures and promoting their future applications in thermal management and thermoelectric devices. read less NOT USED (low confidence) X. Qin, W. Yan, X. Guo, T. Gao, and Q. Xie, “Molecular Dynamics Simulations of Si ion Substituted Graphene by Bombardment,” IOP Conference Series: Materials Science and Engineering. 2018. link Times cited: 1 Abstract: Molecular dynamics simulations with Tersoff-Ziegler-Biersack… read moreAbstract: Molecular dynamics simulations with Tersoff-Ziegler-Biersack-Littmark (Tersoff-ZBL) potential and adaptive intermolecular reactive empirical bond order (AIREBO) potential are performed to study the substitutional process of silicon ions by bombardment. The silicon ions bombardment of graphene is simulated at energies 100 eV, 100 eV, 68 eV and 67 eV, respectively. All silicon atoms are substitute for the relevant carbon atoms at these energies. And a perfect region of SiC structure in graphene sheet is observed, this approach can viewed as a new preparation of graphene-based SiC electronics in theory. read less NOT USED (low confidence) G. Moras et al., “Shear melting of silicon and diamond and the disappearance of the polyamorphic transition under shear,” Physical Review Materials. 2018. link Times cited: 21 NOT USED (low confidence) R. Rezaei, “Tensile mechanical characteristics and deformation mechanism of metal-graphene nanolayered composites,” Computational Materials Science. 2018. link Times cited: 39 NOT USED (low confidence) A. Vasin, F. Oliveira, M. Cerqueira, J. Schulze, and M. Vasilevskiy, “Structural and vibrational properties of SnxGe1-x: Modeling and experiments,” Journal of Applied Physics. 2018. link Times cited: 7 Abstract: The effects of the composition and macroscopic strain on the… read moreAbstract: The effects of the composition and macroscopic strain on the structural properties and lattice vibrations of SnxGe1-x solid solutions (SSs) are investigated numerically, employing Tersoff empirical inter-atomic potentials, and experimentally. The calculations provide statistical distributions of bond lengths, pair correlation function, and vibrational Raman spectra of the SSs. Using this approach, we are able to evaluate the tin-content-dependent shifts due to the local environment (i.e., changes in the atomic mass and bond stiffness) and strain effects in the calculated Raman spectra and compare them to experimental data. The relative importance of the composition dependent effects of the local environment and strain for epitaxial layers of GeSn solid solutions is analysed.The effects of the composition and macroscopic strain on the structural properties and lattice vibrations of SnxGe1-x solid solutions (SSs) are investigated numerically, employing Tersoff empirical inter-atomic potentials, and experimentally. The calculations provide statistical distributions of bond lengths, pair correlation function, and vibrational Raman spectra of the SSs. Using this approach, we are able to evaluate the tin-content-dependent shifts due to the local environment (i.e., changes in the atomic mass and bond stiffness) and strain effects in the calculated Raman spectra and compare them to experimental data. The relative importance of the composition dependent effects of the local environment and strain for epitaxial layers of GeSn solid solutions is analysed. read less NOT USED (low confidence) T. Nguyen, K. Sato, and Y. Shibutani, “Development of Fe-C interatomic potential for carbon impurities in α-iron,” Computational Materials Science. 2018. link Times cited: 10 NOT USED (low confidence) H. Gong, P. Zhu, L. Si, X. Zhang, and G. Xie, “‘M-shape’ nanoscale friction anisotropy of phosphorene,” Computational Materials Science. 2018. link Times cited: 12 NOT USED (low confidence) A. Sgouros, G. Kalosakas, G. Kalosakas, K. Papagelis, and C. Galiotis, “Compressive response and buckling of graphene nanoribbons,” Scientific Reports. 2018. link Times cited: 22 NOT USED (low confidence) H.-T. Nguyen, M.-Q. Le, and V. Nguyen, “Mode-I stress intensity factors of silicene, AlN, and SiC hexagonal sheets,” Materials Research Express. 2018. link Times cited: 11 Abstract: The crack-tip displacement field and molecular dynamics fini… read moreAbstract: The crack-tip displacement field and molecular dynamics finite element method with Tersoff potentials were used to find the mode-I stress intensity factors (SIF) of silicene, aluminum nitride (AlN), and silicon carbide (SiC) hexagonal sheets. Fracture properties of graphene and boronitrene are also included for comparison. It is found that KIct (KIc is mode-I critical SIF and t is the sheet’s thickness) of silicene, AlN, and SiC sheets are approximately 80, 66, and 47%; and 73, 64, and 45% smaller values of those of graphene for crack along the armchair and zigzag directions, respectively. The estimated fracture toughness of silicene is close to the experimental data of single-crystal silicon. read less NOT USED (low confidence) M. Eftekhari, S. Mohammadi, and M. Khanmohammadi, “A hierarchical nano to macro multiscale analysis of monotonic behavior of concrete columns made of CNT-reinforced cement composite,” Construction and Building Materials. 2018. link Times cited: 26 NOT USED (low confidence) A. Dasmahapatra and P. Kroll, “Modeling amorphous silicon nitride: A comparative study of empirical potentials,” Computational Materials Science. 2018. link Times cited: 12 NOT USED (low confidence) M. Eftekhari, A. Karrech, M. Elchalakani, and H. Basarir, “Multi-scale Modeling Approach to Predict the Nonlinear Behavior of CNT-reinforced Concrete Columns Subjected to Service Loading,” Structures. 2018. link Times cited: 13 NOT USED (low confidence) G. Cáceres, F. González-Cataldo, and G. Gutiérrez, “Normal Modes in Graphene for Different Geometries,” Journal of Physics: Conference Series. 2018. link Times cited: 0 Abstract: Using classical molecular dynamics, we study the time evolut… read moreAbstract: Using classical molecular dynamics, we study the time evolution of out-of-plane standing waves on a square and circular single-layer graphene membrane. We explore the first six normal modes, obtaining the oscillation frequencies from the atomic motion. The modes show long-time stability in the harmonic regime, with no decoupling on multiple frequencies. Using the frequencies of oscillation, we calculated the transverse speed of sound in graphene and the tension on the membrane. read less NOT USED (low confidence) F. González-Cataldo, F. Corvacho, and G. Gutiérrez, “Melting curve of Si by means of the Z-method,” Journal of Physics: Conference Series. 2018. link Times cited: 1 Abstract: The melting curve of silicon is investigated through classic… read moreAbstract: The melting curve of silicon is investigated through classical molecular dynamics simulations. We explore pressures from 0 to 20 GPa using the EDIP, Stillinger-Weber, and Tersoff interactomic potentials. Using the Z method, we demonstrate that the predicted melting temperature Tm can be significantly overestimated, depending on the potential chosen. Our results show that none of the potentials explored is able to reproduce the experimental melting curve of silicon by means of the Z-method. However, the EDIP potential does predict the change in the Clapeyron slope, associated with the diamond to β-tin phase transition. read less NOT USED (low confidence) M. Settem, M. Islam, and A. Kanjarla, “On the effect of relative stabilities of FCC-like and HCP-like atoms on structure of FCC silver nanoclusters,” Computational Materials Science. 2018. link Times cited: 2 NOT USED (low confidence) C. Huang et al., “Anisotropy effects in diamond under nanoindentation,” Carbon. 2018. link Times cited: 46 NOT USED (low confidence) W. Lowe and J. Eapen, “Using Space-Time Correlations to Identify Transient Defects,” MRS Advances. 2018. link Times cited: 0 Abstract: Atomistic simulations are employed to investigate the dynami… read moreAbstract: Atomistic simulations are employed to investigate the dynamical behavior of atoms in cubic silicon carbide (SiC) following a 5 keV radiation knock. Specifically, we have computed the time-resolved van Hove self-correlation function, G_s(r,t), separately for the silicon and carbon sub-lattices. Our goal is to probe the early radiation damage mechanisms using a dynamical methodology. The simulation results show that the carbon atoms engage in a dynamic hopping mechanism as the system recovers from the radiation knock. The silicon atoms, however, exhibit a strikingly different behaviour: the time variation of 4πr^2G_s(r,t) indicates a dynamic tension between the crystalline and disordered regions of the Si sub-lattice. The power-law tail of the 4πr^2G_s(r,t) correlation for silicon atoms suggests a scale-free self-organized critical (SOC) state – a possible precursor to the collapse of the Si sub-lattice. read less NOT USED (low confidence) Y. Liu, B. Li, and L. Kong, “A molecular dynamics investigation into nanoscale scratching mechanism of polycrystalline silicon carbide,” Computational Materials Science. 2018. link Times cited: 51 NOT USED (low confidence) M. El-Genk, K. Talaat, and B. Cowen, “Thermal conductivity of silicon using reverse non-equilibrium molecular dynamics,” Journal of Applied Physics. 2018. link Times cited: 13 Abstract: Simulations are performed using the reverse non-equilibrium … read moreAbstract: Simulations are performed using the reverse non-equilibrium molecular dynamics (rNEMD) method and the Stillinger-Weber (SW) potential to determine the input parameters for achieving ±1% convergence of the calculated thermal conductivity of silicon. These parameters are then used to investigate the effects of the interatomic potentials of SW, Tersoff II, Environment Dependent Interatomic Potential (EDIP), Second Nearest Neighbor, Modified Embedded-Atom Method (MEAM), and Highly Optimized Empirical Potential MEAM on determining the bulk thermal conductivity as a function of temperature (400–1000 K). At temperatures > 400 K, data collection and swap periods of 15 ns and 150 fs, system size ≥6 × 6 UC2 and system lengths ≥192 UC are adequate for ±1% convergence with all potentials, regardless of the time step size (0.1–0.5 fs). This is also true at 400 K, except for the SW potential, which requires a data collection period ≥30 ns. The calculated bulk thermal conductivities using the rNEMD method and the EDIP potential are close to, but lower than experimental values. The 10% difference at 400 K increases gradually to 20% at 1000 K.Simulations are performed using the reverse non-equilibrium molecular dynamics (rNEMD) method and the Stillinger-Weber (SW) potential to determine the input parameters for achieving ±1% convergence of the calculated thermal conductivity of silicon. These parameters are then used to investigate the effects of the interatomic potentials of SW, Tersoff II, Environment Dependent Interatomic Potential (EDIP), Second Nearest Neighbor, Modified Embedded-Atom Method (MEAM), and Highly Optimized Empirical Potential MEAM on determining the bulk thermal conductivity as a function of temperature (400–1000 K). At temperatures > 400 K, data collection and swap periods of 15 ns and 150 fs, system size ≥6 × 6 UC2 and system lengths ≥192 UC are adequate for ±1% convergence with all potentials, regardless of the time step size (0.1–0.5 fs). This is also true at 400 K, except for the SW potential, which requires a data collection period ≥30 ns. The calculated bulk thermal conductivities using the rNEMD method and the EDIP... read less NOT USED (low confidence) L. Yang, B. Latour, and A. Minnich, “Phonon transmission at crystalline-amorphous interfaces studied using mode-resolved atomistic Green’s functions,” Physical Review B. 2018. link Times cited: 22 Abstract: The transmission and reflection processes of THz phonons at … read moreAbstract: The transmission and reflection processes of THz phonons at solid interfaces are of fundamental interest and of importance to thermal conduction in nanocrystalline solids. The processes are challenging to investigate, however, because typical experiments and many computational approaches do not provide transmission coefficients resolved by phonon mode. Here, we examine the modal transmission and reflection processes of THz phonons across an amorphous Si region connected to two crystalline Si leads, a model interface for those that occur in nanocrystalline solids, using mode-resolved atomistic Green's functions. We find that the interface acts as a low-pass filter, reflecting modes of frequency greater than around 3 THz while transmitting those below this frequency, in agreement with a recent experimental report [C. Hua et al., Phys. Rev. B 95, 205423 (2017)]. Further, we find that these low frequency modes travel nearly unimpeded through the interface, maintaining their wave vectors on each side of the interface. Our work shows that even completely disordered regions may not be effective at reflecting THz phonons, with implications for efforts to alter thermal conductivity in nanocrystalline solids. read less NOT USED (low confidence) P. Reyes et al., “The stability of hollow nanoparticles and the simulation temperature ramp,” Inorganic chemistry frontiers. 2018. link Times cited: 6 Abstract: Hollow nanoparticles (hNPs) are of interest because their la… read moreAbstract: Hollow nanoparticles (hNPs) are of interest because their large cavities and small thickness give rise to a large surface to volume ratio. However, in general they are not in equilibrium and far from their global energy minimum, which often makes them unstable against perturbations. In fact, a temperature increase can induce a structural collapse into a nanoparticle, and consequently a loss of their unique properties. This problem has been studied by means of molecular dynamics (MD) simulations, but without emphasis on the speed of the temperature increase. Here we explore how the temperature variation, and the rate at which it is varied in MD simulations, determines the final conformation of the hNPs. In particular, we show how different temperature ramps determine the final shape of Pt hNPs that initially have an external radius between 0.7 and 24 nm, and an internal radius between 0.19 and 2.4 nm. In addition, we also perform the simulations of other similar metals like Ag and Au. Our results indicate that the temperature ramp strongly modifies the final hNP shape, even at ambient temperature. In fact, a rapid temperature increase leads to the formation of stacking faults and twin boundaries which are not generated by a slower temperature increase. Quantitative criteria are established and they indicate that the stacking fault energy is the dominant parameter. read less NOT USED (low confidence) B. Mortazavi, M. Makaremi, M. Shahrokhi, Z. Fan, and T. Rabczuk, “N-graphdiyne two-dimensional nanomaterials: Semiconductors with low thermal conductivity and high stretchability,” Carbon. 2018. link Times cited: 82 NOT USED (low confidence) K. Yashiro, “Local lattice instability analysis on mode I crack tip in β-SiC: Characteristics in binary covalent crystal,” Computational Materials Science. 2018. link Times cited: 6 NOT USED (low confidence) G. Fugallo and L. Colombo, “Corrigendum: Calculating lattice thermal conductivity: a synopsis (2018 Phys. Scr. 93 043002),” Physica Scripta. 2018. link Times cited: 2 Abstract: visually comparing the bottom panel of the published version… read moreAbstract: visually comparing the bottom panel of the published version of fi gure 13 with the corresponding bottom panel of the same fi gure in the present corrigendum it is apparent that a graphical error occurred, whereby only the present version of the fi gure correctly reports the temperature pro fi le ( corresponding to the blue line in ( c )) found in the stationary state of thermal conduction consistent with the assigned boundary conditions. We remark that fi gure 13 ( c ) is not the output of any calculation, but just represents the graphical conceptualization of a given ther-modynamical situation. We fi nally state that the scien-ti fi c content discussed in the paper is not affected by this graphical error. read less NOT USED (low confidence) G. Hobler, D. Maciążek, and Z. Postawa, “Crater function moments: Role of implanted noble gas atoms,” Physical Review B. 2018. link Times cited: 6 NOT USED (low confidence) O. Butusov and V. Dikusar, “IMAGE PATTERN ANALYSIS WITH IMAGE POTENTIAL TRANSFORM.” 2018. link Times cited: 0 Abstract: Pattern analysis with image transform based on potential cal… read moreAbstract: Pattern analysis with image transform based on potential calculation was considered. Initial gray-scale image is sliced into equidistant levels and resulting binary image was prepared by joining of some levels to one binary image. Binary image was transformed under assumption that white pixels in it may be considered as electric charges or spins. Using this assumption Ising model and Coulomb model interaction between white pixels was used for image potential transform. The transform was calculated using moving window. The resulting gray-scale image was again transformed to binary image using the thresholding on 0.5 level. Further binary images were analyzed using statistical indices (average, standard deviation, skewness, kurtosis) and geometric signatures: area, eccentricity, Euler number, orientation and perimeter. It was found that the most suitable geometric signature for pattern configuration analysis of Ising potential transform (IPT) and Coulomb potential transform (CPT) is area value. Similarly the most suitable statistics is distance statistics between white pixels. read less NOT USED (low confidence) H. Zhang, Z. Ren, C. Ye, and Y. Dong, “An open-source code to generate carbon nanotube/graphene junctions,” Computational Materials Science. 2018. link Times cited: 9 NOT USED (low confidence) J. Chen et al., “Nanoindentation and deformation behaviors of silicon covered with amorphous SiO2: a molecular dynamic study,” RSC Advances. 2018. link Times cited: 26 Abstract: A fundamental understanding of the mechanical properties and… read moreAbstract: A fundamental understanding of the mechanical properties and deformation behaviors of surface modified silicon during chemical mechanical polishing (CMP) processes is difficult to obtain at the nanometer scale. In this research, MD simulations of monocrystalline silicon covered with an amorphous SiO2 film with different thickness are implemented by nanoindentation, and it is found that both the indentation modulus and hardness increase with the growing indentation depth owning to the strongly silicon substrate effect. At the same indentation depth, the indentation modulus decreases shapely with the increase of film thickness because of less substrate influence, while the hardness agrees well with the trend of modulus at shallow depth but mismatches at larger indentation depth. The observed SiO2 film deformation consists of densification and thinning along indentation direction and extension in the deformed area due to the rotation and deformation of massive SiO4 tetrahedra. The SiO2 film plays an important role in the onset and development of silicon phase transformation. The thinner the SiO2 film is, the earlier the silicon phase transformation takes place. So the numbers of phase transformation atoms increase with the decrease of SiO2 film thickness at the same indentation depth. It is suggested that the thicker film should be better during CMP process for higher material removal rate and less defects within silicon substrate. read less NOT USED (low confidence) R. Abadi, A. N. Shirazi, M. Izadifar, M. Sepahi, and T. Rabczuk, “Fabrication of nanopores in polycrystalline boron-nitride nanosheet by using Si, SiC and diamond clusters bombardment,” Computational Materials Science. 2018. link Times cited: 16 NOT USED (low confidence) H. Dong, Z. Fan, L. Shi, A. Harju, and T. Ala-Nisilla, “Equivalence of the equilibrium and the nonequilibrium molecular dynamics methods for thermal conductivity calculations: From bulk to nanowire silicon,” Physical Review B. 2018. link Times cited: 43 Abstract: © 2018 American Physical Society. Molecular dynamics (MD) si… read moreAbstract: © 2018 American Physical Society. Molecular dynamics (MD) simulations play an important role in studying heat transport in complex materials. The lattice thermal conductivity can be computed either using the Green-Kubo formula in equilibrium MD (EMD) simulations or using Fourier's law in nonequilibrium MD (NEMD) simulations. These two methods have not been systematically compared for materials with different dimensions and inconsistencies between them have been occasionally reported in the literature. Here we give an in-depth comparison of them in terms of heat transport in three allotropes of Si: three-dimensional bulk silicon, two-dimensional silicene, and quasi-one-dimensional silicon nanowire. By multiplying the correlation time in the Green-Kubo formula with an appropriate effective group velocity, we can express the running thermal conductivity in the EMD method as a function of an effective length and directly compare it to the length-dependent thermal conductivity in the NEMD method. We find that the two methods quantitatively agree with each other for all the systems studied, firmly establishing their equivalence in computing thermal conductivity. read less NOT USED (low confidence) D. Shen, G. Zou, L. Liu, A. Wu, W. Duley, and Y. Zhou, “Investigation of impact and spreading of molten nanosized gold droplets on solid surfaces.,” Applied optics. 2018. link Times cited: 5 Abstract: Understanding the impact dynamics and spreading of molten na… read moreAbstract: Understanding the impact dynamics and spreading of molten nanosized droplets on a solid surface is a crucial step towards the design and control of nano-fabrication in many novel applications of nanotechnology. In this context, molecular dynamic (MD) simulations have been conducted to compute temperature and dynamic contact angles of nano-droplets during impact. The evolution of the morphology of a molten metallic nano-droplet impacting on a substrate has been studied using a combination of experimental and simulation techniques. Femtosecond lasers have been used to transfer nanosized gold droplets. Droplet morphology calculated in MD simulations is found to be in good agreement with that seen in scanning electron microscopy (SEM) images. It is found that the spreading of nanoscale molten gold droplets upon impact is enhanced by increasing the droplet impact energy. As observed in experimental data, MD simulation results show that a high droplet-substrate heat transfer rate together with increased wettability of the substrate facilitates spreading and results in a thinner metal deposit after solidification. read less NOT USED (low confidence) Y. A. Kosevich and I. Strelnikov, “Quantum interference between two phonon paths and reduced heat transport in diamond lattice with atomic-scale planar defects.” 2018. link Times cited: 5 Abstract: Destructive quantum interference between the waves propagati… read moreAbstract: Destructive quantum interference between the waves propagating through laterally inhomogeneous layer can result in their total reflection, which in turn reduces energy flux carried by these waves. We consider the systems of Ge atoms, which fully or partly, in the chequer-wise order, fill a crystal plane in diamond-like Si lattice. We have revealed that a single type of the atomic defects, which are placed in identical positions in different unit cells in the defect crystal plane, can result in double transmission antiresonances of phonon wave packets. This new effect we relate with the complex structure of the diamond-like unit cell, which comprises two atoms in different positions and results in two distinct vibration resonances in two interfering phonon paths. We also consider the propagation of phonon wave packets in the superlatticies made of the defect planes, half-filled in the chequer-wise order with Ge atoms. We have revealed relatively broad phonon stop bands with center frequencies at the transm... read less NOT USED (low confidence) M. Melnykov and R. Davidchack, “Characterization of melting properties of several Fe-C model potentials,” Computational Materials Science. 2018. link Times cited: 8 NOT USED (low confidence) Y. Hong, N. Zhang, and M. A. Zaeem, “Metastable phase transformation and deformation twinning induced hardening-stiffening mechanism in compression of silicon nanoparticles,” Acta Materialia. 2018. link Times cited: 20 NOT USED (low confidence) F. Xu, F. Fang, and X. Zhang, “Effects of recovery and side flow on surface generation in nano-cutting of single crystal silicon,” Computational Materials Science. 2018. link Times cited: 55 NOT USED (low confidence) T. Saha, A. Bhowmick, T. Oda, T. Miyauchi, and N. Fujii, “Reactive molecular dynamics simulation for analysis of thermal decomposition of oligomeric polyacrylicester model nanocomposite and its experimental verification,” Polymer. 2018. link Times cited: 19 NOT USED (low confidence) J. Ortiz‐Medina et al., “Robust water desalination membranes against degradation using high loads of carbon nanotubes,” Scientific Reports. 2018. link Times cited: 41 NOT USED (low confidence) I. Navid, A. I. Khan, and S. Subrina, “Impact of tensile strain on the thermal transport of zigzag hexagonal boron nitride nanoribbon: An equilibrium molecular dynamics study,” Materials Research Express. 2018. link Times cited: 5 Abstract: The thermal conductivity of single layer strained hexagonal … read moreAbstract: The thermal conductivity of single layer strained hexagonal boron nitride nanoribbon (h-BNNR) has been computed using the Green—Kubo formulation of Equilibrium Molecular Dynamics (EMD) simulation. We have investigated the impact of strain on thermal transport of h-BNNR by varying the applied tensile strain from 1% upto 5% through uniaxial loading. The thermal conductivity of h-BNNR decreases monotonically with the increase of uniaxial tensile strain keeping the sample size and temperature constant. The thermal conductivity can be reduced upto 86% for an applied uniaxial tensile strain of 5%. The impact of temperature and width variation on the thermal conductivity of h-BNNR has also been studied under different uniaxial tensile strain conditions. With the increase in temperature, the thermal conductivity of strained h-BNNR exhibits a decaying characteristics whereas it shows an opposite pattern with the increasing width. Such study would provide a good insight on the strain tunable thermal transport for the potential device application of boron nitride nanostructures. read less NOT USED (low confidence) I. Kartuzov, V. Bekenev, and V. Kartuzov, “Molecular‐Dynamic Modeling of Propagation of Shock Wave in Porous Ceramic Materials.” 2018. link Times cited: 1 NOT USED (low confidence) R. Kumar, A. Parashar, and P. Mertiny, “Displacement thresholds and knock-on cross sections for hydrogenated h-BN monolayers,” Computational Materials Science. 2018. link Times cited: 9 NOT USED (low confidence) Z. Wang et al., “Abnormal separation of the silicon-oxygen bond in the liquid layering transition of silicon dioxide in a nanoslit.,” Physical chemistry chemical physics : PCCP. 2018. link Times cited: 0 Abstract: We investigated the unusual layering transition (LT) in quas… read moreAbstract: We investigated the unusual layering transition (LT) in quasi-2D liquid silicon dioxide (SiO2) confined in a nanoslit. Our results indicate that the slit size and pressure induce the abnormal LT in liquid SiO2, accompanied by a rapid change in the density, diffusion coefficient, pair correlation function and average potential energy. The silicon and oxygen atoms are almost completely separated under the extremely strong confinement effect, which is the characteristic feature of the LT. The negative slope of the LT lines in the phase diagram at different pressures suggests that a confinement-induced LT occurs at high pressure and a pressure-induced LT occurs at low pressure. read less NOT USED (low confidence) S. Goel and A. Stukowski, “Comment on ‘Incipient plasticity of diamond during nanoindentation’ by C. Xu, C. Liu and H. Wang, RSC Advances, 2017, 7, 36093,” RSC Advances. 2018. link Times cited: 4 Abstract: A recent molecular dynamics simulation study on nanoindentat… read moreAbstract: A recent molecular dynamics simulation study on nanoindentation of diamond carried out by Xu et al.1 has reported observation of the presence of a controversial hexagonal lonsdaleite phase of carbon in the indentation area. In this comment, we question the reported observation and attribute this anomaly to shortcomings of the long range bond order potential (LCBOP) employed in the nanoindentation study. read less NOT USED (low confidence) K. Cai, L. Yang, J. Shi, and Q. Qin, “Critical conditions for escape of a high-speed fullerene from a BNC nanobeam after collision,” Scientific Reports. 2018. link Times cited: 9 NOT USED (low confidence) E. Lee and T. Luo, “Thermal transport across solid-solid interfaces enhanced by pre-interface isotope-phonon scattering,” Applied Physics Letters. 2018. link Times cited: 26 Abstract: Thermal transport across solid interfaces can play critical … read moreAbstract: Thermal transport across solid interfaces can play critical roles in the thermal management of electronics. In this letter, we use non-equilibrium molecular dynamics simulations to investigate the isotope effect on the thermal transport across SiC/GaN interfaces. It is found that engineered isotopes (e.g., 10% 15N or 71Ga) in the GaN layer can increase the interfacial thermal conductance compared to the isotopically pure case by as much as 23%. Different isotope doping features, such as the isotope concentration, skin depth of the isotope region, and its distance from the interface, are investigated, and all of them lead to increases in thermal conductance. Studies of spectral temperatures of phonon modes indicate that interfacial thermal transport due to low-frequency phonons (< 20 THz) is enhanced after isotopes are introduced. These results suggest that the enhanced thermal conductance is related to the isotope-phonon scattering, which facilitates the redistribution of phonon energy among different mod... read less NOT USED (low confidence) M. Barfmal and A. Montazeri, “MD-based design of SiC/graphene nanocomposites towards better mechanical performance,” Ceramics International. 2017. link Times cited: 15 NOT USED (low confidence) N. H. Giang, T. T. Hanh, L. N. Ngoc, N. T. Nga, and V. V. Hoang, “Formation of graphene on BN substrate by vapor deposition method and size effects on its structure,” Physica B-condensed Matter. 2017. link Times cited: 4 NOT USED (low confidence) L. Nan, N. Ding, S. Qu, L. Liu, W. Guo, and C. M. L. Wu, “Mechanical properties and failure behavior of hexagonal boron nitride sheets with nano-cracks,” Computational Materials Science. 2017. link Times cited: 32 NOT USED (low confidence) A. Rajabpour, Z. Fan, and S. M. V. Allaei, “Inter-layer and intra-layer heat transfer in bilayer/monolayer graphene van der Waals heterostructure: Is there a Kapitza resistance analogous?,” Applied Physics Letters. 2017. link Times cited: 20 Abstract: Van der Waals heterostructures have exhibited interesting ph… read moreAbstract: Van der Waals heterostructures have exhibited interesting physical properties. In this paper, heat transfer in hybrid coplanar bilayer/monolayer (BL-ML) graphene, as a model layered van der Waals heterostructure, was studied using non-equilibrium molecular dynamics (MD) simulations. The temperature profile and inter- and intra-layer heat fluxes of the BL-ML graphene indicated that, there is no fully developed thermal equilibrium between layers and the drop in the average temperature profile at the step-like BL-ML interface is not attributable to the effect of Kapitza resistance. By increasing the length of the system up to 1 μm in the studied MD simulations, the thermally non-equilibrium region was reduced to a small area near the step-like interface. All MD results were compared to a continuum model and a good match was observed between the two approaches. Our results provide a useful understanding of heat transfer in nano- and micro-scale layered materials and van der Waals heterostructures. read less NOT USED (low confidence) M. Liao, “Buckling behaviors of cantilevered open-tip carbon nanocones subjected to transverse loading: A molecular dynamics study,” Physica B-condensed Matter. 2017. link Times cited: 1 NOT USED (low confidence) E. Barani, E. Korznikova, A. Chetverikov, K. Zhou, and S. Dmitriev, “Gap discrete breathers in strained boron nitride,” Physics Letters A. 2017. link Times cited: 42 NOT USED (low confidence) J. Zhang, “Boron nitride honeycombs with superb and tunable piezopotential properties,” Nano Energy. 2017. link Times cited: 20 NOT USED (low confidence) S. Thomas, K. Ajith, and M. C. Valsakumar, “Effect of ripples on the finite temperature elastic properties of hexagonal boron nitride using strain-fluctuation method,” Superlattices and Microstructures. 2017. link Times cited: 10 NOT USED (low confidence) A. Kubo, S. Nagao, and Y. Umeno, “Molecular dynamics study of deformation and fracture in SiC with angular dependent potential model,” Computational Materials Science. 2017. link Times cited: 7 NOT USED (low confidence) P. Zhang, R. Zhu, M. Jiang, Y. Song, D. Zhang, and Y. Cui, “Size effect caused significant reduction of thermal conductivity of GaAs/AlAs distributed Bragg reflector used in semiconductor disk laser,” Optics and Laser Technology. 2017. link Times cited: 4 NOT USED (low confidence) E. Halac, M. Reinoso, and E. Burgos, “Study of bi-dimensional materials using a semi-empirical potential including a torsional term,” Chemical Physics Letters. 2017. link Times cited: 0 NOT USED (low confidence) M. Korayem, M. Estaji, and A. Homayooni, “Noncalssical multiscale modeling of ssDNA manipulation using a CNT-nanocarrier based on AFM.,” Colloids and surfaces. B, Biointerfaces. 2017. link Times cited: 9 NOT USED (low confidence) M. Izadifar, R. Abadi, A. Jam, and T. Rabczuk, “Investigation into the effect of doping of boron and nitrogen atoms in the mechanical properties of single-layer polycrystalline graphene,” Computational Materials Science. 2017. link Times cited: 25 NOT USED (low confidence) A. Galashev and K. Ivanichkina, “Nanoscale simulation of the lithium ion interaction with defective silicene,” Physics Letters A. 2017. link Times cited: 25 NOT USED (low confidence) M. Prieto-Depedro, A. Payet, B. Sklénard, and I. Martín-Bragado, “Atomistic Modeling of the Ge Composition Dependence of Solid Phase Epitaxial Regrowth in SiGe Alloys,” Journal of Applied Physics. 2017. link Times cited: 0 Abstract: The solid phase epitaxial regrowth (SPER) of SiGe alloys has… read moreAbstract: The solid phase epitaxial regrowth (SPER) of SiGe alloys has been studied using atomistic simulation techniques. Molecular Dynamics (MD) simulations reproduce the recrystallization process of amorphous structures created in two different ways: introducing atoms at random positions according to the crystalline density and carefully relaxing the structure; and using a bond switching algorithm by means of ab initio. Activation energies are confronted, and the first method is validated as an efficient way to generate amorphous-crystalline structures suitable to study SPER processes. The MD extracted results show that the SPER rate does not vary monotonically with the Ge composition; instead, activation energies reveal a non-linear behaviour with the addition of Ge, due to the two-part behaviour of the SPER rate: SPER rate itself and a hypothesized extra strain due to the bond length difference. Since SPER is a thermally activated process, nudged elastic band calculations are carried out in order to extend the... read less NOT USED (low confidence) W. Li, Y. Ando, and S. Watanabe, “Cu Diffusion in Amorphous Ta2O5 Studied with a Simplified Neural Network Potential,” Journal of the Physical Society of Japan. 2017. link Times cited: 24 Abstract: Understanding atomistic details of diffusion processes in am… read moreAbstract: Understanding atomistic details of diffusion processes in amorphous structures is becoming increasingly important due to the recent advances in various information and energy devices. Atomistic simulations based on the density functional theory (DFT) represent a powerful approach; however, the development of a method characterized by both high reliability and computational efficiency remains a challenge. In this study, a simple neural network (NN) interatomic potential is constructed from the results of DFT simulations to investigate the diffusion of a single Cu atom in amorphous Ta2O5. The proposed technique is as accurate as the DFT in predicting hopping paths and the corresponding barrier energies in a given amorphous structure. Although the developed NN-based approach exhibited some limitations since it was constructed specifically for Cu, the obtained results showed that the NN potential was able to satisfactorily describe the Cu diffusion behavior. Thus, the Cu diffusion activation energy calculated... read less NOT USED (low confidence) T. Wejrzanowski and K. Kurzydłowski, “Modeling of Size Effects in Diffusion Driven Processes at Nanoscale - Large Atomic and Mesoscale Methods,” Diffusion Foundations. 2017. link Times cited: 1 Abstract: The results of the studies presented here are devoted to und… read moreAbstract: The results of the studies presented here are devoted to understanding of microstructure effect on the processes and properties driven by diffusion. The role of various interfaces (intergranular, phase, free surface), as the high-energy defects, is underlined and investigated with special attention. The methodology relevant to analyses of the microstructural processes is first briefly presented. The capability and limitations of classical molecular dynamics, mesoscale Monte Carlo and cellular automaton techniques are described. Two examples of the diffusion driven processes analyzed at various length and time scale are shown: namely, grain growth in nanometallic materials and melting of thin embedded films. The modeling results are also accompanied with experimental studies. Thanks to application of numerical methods, models of relevant processes were proposed, which enabled to provide quantitative relationships between microstructure and the process kinetics. Such relationships can be later used for design of optimized materials for wide range of applications. read less NOT USED (low confidence) A. Minkin, A. Knizhnik, and B. Potapkin, “GPU implementations of some many-body potentials for molecular dynamics simulations,” Adv. Eng. Softw. 2017. link Times cited: 9 NOT USED (low confidence) M. Korayem and A. Homayooni, “Non-classic modeling of three-dimensional manipulation with different geometry of atomic force microscopy components: Multi-scale approach,” Mechanics Research Communications. 2017. link Times cited: 2 NOT USED (low confidence) I. G. Ringdalen, S. Wenner, J. Friis, and J. Marian, “Dislocation dynamics study of precipitate hardening in Al-Mg-Si alloys with input from experimental characterization,” MRS Communications. 2017. link Times cited: 6 Abstract: Partial aging of AA6060 aluminum alloys is known to result i… read moreAbstract: Partial aging of AA6060 aluminum alloys is known to result in a microstructure characterized by needle-shaped Si/Mg-rich precipitates. These precipitates belong to the non-equilibrium β″ phase and are coherent with the face-centered cubic Al lattice, despite of which they can cause considerable hardening. We have investigated the interaction between these β″ precipitates and dislocations using a unique combination of modeling and experimental observations. Dislocation-precipitate interactions are simulated using dislocation dynamics (DD) parameterized with atomistic simulations. The elastic fields due to the precipitates are described by a decay law fitted to high-resolution transmission electron microscopy measurements. These fields are subsequently used in DD to study the strength of individual precipitates as a function of size and dislocation character. Our results can be used to parameterize crystal plasticity models to calculate the strength of AA6060 at the macroscopic level. read less NOT USED (low confidence) Z. Wu, W. Liu, and L. Zhang, “Revealing the deformation mechanisms of 6H-silicon carbide under nano-cutting,” Computational Materials Science. 2017. link Times cited: 56 NOT USED (low confidence) B. Javvaji, B. M. Shenoy, D. Mahapatra, A. Ravikumar, G. Hegde, and M. Rizwan, “Stable configurations of graphene on silicon,” Applied Surface Science. 2017. link Times cited: 10 NOT USED (low confidence) Y. Zhou, X. Gong, B. Xu, and M. Hu, “First-principles and molecular dynamics study of thermoelectric transport properties of N-type silicon-based superlattice-nanocrystalline heterostructures,” Journal of Applied Physics. 2017. link Times cited: 12 Abstract: Electrical and thermal transport in silicon germanium superl… read moreAbstract: Electrical and thermal transport in silicon germanium superlattice nanostructures has received extensive attention from scientists for understanding carrier properties at the nanoscale, and the figure-of-merit (ZT) reported in such structures has inspired engineers to develop cost-effective waste heat recovery systems. In this paper, the thermoelectric transport properties of the silicon-based superlattice- and anti-superlattice-nanocrystalline heterostructures are systematically studied by first-principles and molecular dynamics simulations combined with the Boltzmann transport theory. The thermal conductivity, which is thought to be the essential bottleneck for bulk crystalline Si to gain a high ZT value, of such structures is found to be reduced by two orders of magnitude and reaches a level far below the amorphous limit of Si. This is achieved due to the extremely strong phonon-boundary scattering at both grain boundaries and Si-Ge interfaces, which will lead to the phonon mean free path being much sm... read less NOT USED (low confidence) R. Guerra, I. Leven, A. Vanossi, O. Hod, and E. Tosatti, “Smallest Archimedean Screw: Facet Dynamics and Friction in Multiwalled Nanotubes,” Nano Letters. 2017. link Times cited: 13 Abstract: We identify a new material phenomenon, where minute mechanic… read moreAbstract: We identify a new material phenomenon, where minute mechanical manipulations induce pronounced global structural reconfigurations in faceted multiwalled nanotubes. This behavior has strong implications on the tribological properties of these systems and may be the key to understand the enhanced interwall friction recently measured for boron-nitride nanotubes with respect to their carbon counterparts. Notably, the fast rotation of helical facets in these systems upon coaxial sliding may serve as a nanoscale Archimedean screw for directional transport of physisorbed molecules. read less NOT USED (low confidence) Y. Yan, S. Zhou, and S. Liu, “Atomistic simulation on mechanical behaviors of Al/SiC nanocomposites,” 2017 18th International Conference on Electronic Packaging Technology (ICEPT). 2017. link Times cited: 4 Abstract: Molecular dynamics (MD) simulations were carried out to stud… read moreAbstract: Molecular dynamics (MD) simulations were carried out to study the mechanical properties of co-continuous Al/SiC nanocomposites under tensile loading. Three cases of different models were implemented to investigate the influence of volume fraction (Vf) of SiC, thickness of SiC skeletons and shape of Al nanowire on the mechanical properties of the nanocomposites. It is found that the ultimate strength and Young's modulus of nanocomposites increase nonlinearly with the Vf of SiC, whereas the limit strains decrease with the increasing Vf of SiC. The Young's modulus obtained by MD simulations are in good agreement with the prediction by micromechanics methods and experimental results. In addition, the thickness of SiC skeletons and the shape of Al nanowire have a significant impact on the mechanical behaviors of co-continuous Al-SiC nanocomposites. This study on the mechanical properties of co-continuous Al-SiC nanocomposites will be helpful to further understanding the mechanical behaviors of the metal/ceramics co-continuous composites. read less NOT USED (low confidence) C. Lin, X. Zhang, and Z. Rao, “Theoretical prediction of thermal transport in BC2N monolayer,” Nano Energy. 2017. link Times cited: 39 NOT USED (low confidence) J. Fu, B. Cao, S. H. Hamdar, and T. Li, “Towards Safer Pedestrian Traffic: Investigation of the Impact of Social Field Characteristic on Crowd Dynamics,” Traffic and Granular Flow ’17. 2017. link Times cited: 0 NOT USED (low confidence) R. Aghababaei, D. Warner, and J. Molinari, “On the debris-level origins of adhesive wear,” Proceedings of the National Academy of Sciences. 2017. link Times cited: 76 Abstract: Significance Wear causes a huge amount of material and energ… read moreAbstract: Significance Wear causes a huge amount of material and energy losses annually, with serious environmental, economic, and industrial consequences. Despite considerable progress in the 19th century, the scientific understanding of wear remains mainly empirical. This study reveals the long-standing microscopic origins of material detachment from solids surface, at the most fundamental level, i.e., wear particles. It discloses that the detached particle volume can be estimated without any empirical factor, via the frictional work. This study unifies previously disconnected and not understood experimental observations. The results open the possibility for developing new wear models with drastically increased predictive ability, with applications to geophysics, physics, and engineering. Every contacting surface inevitably experiences wear. Predicting the exact amount of material loss due to wear relies on empirical data and cannot be obtained from any physical model. Here, we analyze and quantify wear at the most fundamental level, i.e., wear debris particles. Our simulations show that the asperity junction size dictates the debris volume, revealing the origins of the long-standing hypothesized correlation between the wear volume and the real contact area. No correlation, however, is found between the debris volume and the normal applied force at the debris level. Alternatively, we show that the junction size controls the tangential force and sliding distance such that their product, i.e., the tangential work, is always proportional to the debris volume, with a proportionality constant of 1 over the junction shear strength. This study provides an estimation of the debris volume without any empirical factor, resulting in a wear coefficient of unity at the debris level. Discrepant microscopic and macroscopic wear observations and models are then contextualized on the basis of this understanding. This finding offers a way to characterize the wear volume in atomistic simulations and atomic force microscope wear experiments. It also provides a fundamental basis for predicting the wear coefficient for sliding rough contacts, given the statistics of junction clusters sizes. read less NOT USED (low confidence) M. Lai, X. Zhang, F. Fang, and M. Bi, “Fundamental investigation on partially overlapped nano-cutting of monocrystalline germanium,” Precision Engineering-journal of The International Societies for Precision Engineering and Nanotechnology. 2017. link Times cited: 32 NOT USED (low confidence) S. Urata and S. Li, “A multiscale model for amorphous materials,” Computational Materials Science. 2017. link Times cited: 11 NOT USED (low confidence) H. Li, R. Xu, Z. Bi, X. Shen, and K. Han, “Melting Properties of Medium-Sized Silicon Nanoclusters:
A Molecular Dynamics Study,” Journal of Electronic Materials. 2017. link Times cited: 7 NOT USED (low confidence) S. Thomas, K. Ajith, and M. C. Valsakumar, “Empirical potential influence and effect of temperature on the mechanical properties of pristine and defective hexagonal boron nitride,” Materials Research Express. 2017. link Times cited: 11 Abstract: The major objective of this work is to present results of a … read moreAbstract: The major objective of this work is to present results of a classical molecular dynamics study to investigate the effect of changing the cut-off distance in the empirical potential on the stress–strain relation and also the temperature dependent Young’s modulus of pristine and defective hexagonal boron nitride. As the temperature increases, the computed Young’s modulus shows a significant decrease along both the armchair and zigzag directions. The computed Young’s modulus shows a trend in keeping with the structural anisotropy of h-BN. The variation of Young’s modulus with system size is elucidated. The observed mechanical strength of h-BN is significantly affected by the vacancy and Stone–Wales type defects. The computed room temperature Young’s modulus of pristine h-BN is 755 GPa and 769 GPa respectively along the armchair and zigzag directions. The decrease of Young’s modulus with increase in temperature has been analyzed and the results show that the system with zigzag edge shows a higher value of Young’s modulus in comparison to that with armchair edge. As the temperature increases, the computed stiffness decreases and the system with zigzag edge possesses a higher value of stiffness as compared to the armchair counterpart and this behaviour is consistent with the variation of Young’s modulus. The defect analysis shows that presence of vacancy type defects leads to a higher Young’s modulus, in the studied range with different percentage of defect concentration, in comparison with Stone–Wales defect. The variations in the peak position of the computed radial distribution function reveals the changes in the structural features of systems with zigzag and armchair edges in the presence of applied stress. read less NOT USED (low confidence) P. Budarapu, J. Reinoso, and M. Paggi, “Concurrently coupled solid shell-based adaptive multiscale method for fracture,” Computer Methods in Applied Mechanics and Engineering. 2017. link Times cited: 34 NOT USED (low confidence) P. Zhang, M. Jiang, R. Zhue, D. Zhang, and Y. Song, “Thermal conductivity of GaAs/AlAs distributed Bragg reflectors in semiconductor disk laser: comparison of molecular dynamics simulation and analytic methods.,” Applied optics. 2017. link Times cited: 5 Abstract: GaAs/AlAs distributed Bragg reflectors (DBRs) are widely use… read moreAbstract: GaAs/AlAs distributed Bragg reflectors (DBRs) are widely used in the gain chips of 1 μm wave band semiconductor disk lasers (SDLs) as an end/folded cavity mirror. Because the generated redundant heat in the active region of a gain chip mainly dissipates through the DBR, thermal conductivities of DBRs are crucial for the output performance of SDLs. For the purpose of more reasonable semiconductor wafer design, to improve the thermal management of SDLs, accurate thermal conductivities of DBRs with various layer thicknesses are under considerable requirement. By the use of the equilibrium molecular dynamics (EMD) simulation and the Tersoff potential, thermal conductivities of GaAs/AlAs superlattices with different layer thickness are calculated, and computed results are compared with reported data to verify the validity of the EMD simulation. The computed thermal conductivities of GaAs/AlAs DBRs using the EMD method show significant reduction in contrast to the bulk value. Compared to EMD simulation, analytic methods result in smaller values of thermal conductivities and get close to the bulk value much more slowly with increasing layer thickness. In the layer thickness of interest (60-100 nm), the Matthiessen rule with α=1 for GaAs and α=0.5 for AlAs is a practicable tool for thermal conductivity estimation. read less NOT USED (low confidence) T. Saha and A. Bhowmick, “High-temperature pyrolysis simulation of acrylonitrile-butadiene model compound with experimental evidence,” Journal of Analytical and Applied Pyrolysis. 2017. link Times cited: 10 NOT USED (low confidence) Q. Chen, Q. Chen, Y.-chao Liang, T. Gao, Z.-an Tian, and Q. Xie, “Evolution of microstructures during rapid crystallization of liquid GaAs,” Chinese Science Bulletin. 2017. link Times cited: 1 Abstract: The technological importance of compound semiconductor GaAs … read moreAbstract: The technological importance of compound semiconductor GaAs are
increasing because of their use in optoelectronic and microelectronic
applications. Due to the high conversion efficiency and carrier mobility,
GaAs can also be applied in solar cells and the recent study upon
GaAs nanowires and their heterostructures has revealed that the conversion
efficiency of GaAs nanowire array solar cells conversion is high up
to 15.3%. Early the liquid and amorphous properties of GaAs were investigated
by employing the first-principles calculations. The emergence of semi-empirical
potential and the improvement of computer level have promoted the
research and application of molecular dynamics (MD) simulation. MD simulation has now become one of the typical modeling methods
at the molecular scale. The simulation is based on the known physical
approximation of all particles in the system to solve the equation
of motion, and obtain the atomic motion trajectory. Analytical potentials
is very important in MD simulation as it is not feasible to solve
the Hamiltonian by means of quantum-mechanical methods with huge computational
complexity. Abell-Tersoff potential function is a short-ranged bond-order
algorithm, which depends on bond lengths and bond angles and hence
accesses information about the atomic structure. So it is suitable
for simulating covalent bond species. Generally used for the IV elements
and compounds like silicon, carbon, and others, but for the III-V
compound semiconductor it is not very accurate due to the ionic bonds.
Usually the modified tersoff potential, by the addition of Coulomb
term, the modified exclusion potential and the truncation parameter,
is used to simulate such semiconductor materials. Many studies on the bulk, surface and elastic properties of GaAs
by means of MD method, are in good agreement with the experimental
results. In this paper Karsten Albe’s Tersoff potential is
adopted as it allows one to model a wide range of properties of GaAs
compound structure. GaAs has two kinds of tetrahedral crystal structure,
namely, Zinc-blende and Wurtzite, the former structure is more stable
under normal conditions. But when reduced to a nanoscale scale, Wurtzite
structure becomes stable. Different structures have distinct properties,
similar to carbon and grapheme. But so far, there is no report on
the evolution of the microstructure and the specific crystalline structure
of GaAs during crystallization under rapid cooling. In this study, MD simulation was performed for liquid GaAs at the
cooling rate 1×10 10 K/s. The pair distribution function,
the total energy per atom, the bond angle distribution function, the
dihedral angle distribution and visualization method were used to
analyze the variations of microstructure during the solidification
process. Results show that the onset temperature of crystallization
of GaAs liquid is 1460 K. The random network is the essential structural
feature of liquid. The rapidly cooled crystallization is Zinc-blende
based polycrystalline structure, with the grain boundary in a eutectic
twin structure is a layer of wurtzite structure. At temperature below
520 K, part of As atoms segregate into simple cubic structure As 8 . read less NOT USED (low confidence) J. Zhan, X. Yao, W. H. Li, and X. Zhang, “Tensile mechanical properties study of SiC/graphene composites based on molecular dynamics,” Computational Materials Science. 2017. link Times cited: 18 NOT USED (low confidence) X. Zhang, S. Zhao, Y. Wang, and J. Xue, “Additivity of kinetic and potential energy contributions in modification of graphene supported on SiO2,” Nuclear Instruments & Methods in Physics Research Section B-beam Interactions With Materials and Atoms. 2017. link Times cited: 2 NOT USED (low confidence) S. Imabayashi and M. Ishimaru, “Molecular Dynamics Study on Structural Relaxation Processes in Amorphous Germanium,” Journal of The Japan Institute of Metals. 2017. link Times cited: 2 Abstract: The structural relaxation of amorphous germanium was examine… read moreAbstract: The structural relaxation of amorphous germanium was examined by molecular dynamics simulations based on the empirical Tersoff interatomic potential. Although the Tersoff potential overestimated both the melting and glass transition temperatures, it was able to reproduce the structural relaxation behavior. The potential energy decreases with thermal annealing below the glass transition temperature, but occasionally increases during structural relaxation. The mean square displacement of atoms also increases in these periods. These changes were attributed to cooperative atomic motion during the structural relaxation. Atomic trajectories revealed that structural changes are induced by spatiallyand temporally-inhomogeneous atomic motions: atomically mobile and immobile regions coexist during structural relaxation. [doi:10.2320/matertrans.M2017036] read less NOT USED (low confidence) H. N. Pishkenari and S. Rezaei, “Characterization of silicon surface elastic constants based on different interatomic potentials,” Thin Solid Films. 2017. link Times cited: 7 NOT USED (low confidence) S. Lu and A. McGaughey, “Thermal conductance of graphene/hexagonal boron nitride heterostructures,” Journal of Applied Physics. 2017. link Times cited: 16 Abstract: The lattice-based scattering boundary method is applied to c… read moreAbstract: The lattice-based scattering boundary method is applied to compute the phonon mode-resolved transmission coefficients and thermal conductances of in-plane heterostructures built from graphene and hexagonal boron nitride (hBN). The thermal conductance of all structures is dominated by acoustic phonon modes near the Brillouin zone center that have high group velocity, population, and transmission coefficient. Out-of-plane modes make their most significant contributions at low frequencies, whereas in-plane modes contribute across the frequency spectrum. Finite-length superlattice junctions between graphene and hBN leads have a lower thermal conductance than comparable junctions between two graphene leads due to lack of transmission in the hBN phonon bandgap. The thermal conductances of bilayer systems differ by less than 10% from their single-layer counterparts on a per area basis, in contrast to the strong thermal conductivity reduction when moving from single- to multi-layer graphene. read less NOT USED (low confidence) X. Dong and Y. Shin, “Multi-scale modeling of thermal conductivity of SiC-reinforced aluminum metal matrix composite,” Journal of Composite Materials. 2017. link Times cited: 9 Abstract: High thermal conductivity is one important factor in the sel… read moreAbstract: High thermal conductivity is one important factor in the selection or development of ceramics or composite materials. Predicting the thermal conductivity would be useful to the design and application of such materials. In this paper, a multi-scale model is developed to predict the effective thermal conductivity in SiC particle-reinforced aluminum metal matrix composite. A coupled two-temperature molecular dynamics model is used to calculate the thermal conductivity of the Al/SiC interface. The electronic effects on the interfacial thermal conductivity are studied. A homogenized finite element model with embedded thin interfacial elements is used to predict the properties of bulk materials, considering the microstructure. The effects of temperatures, SiC particle sizes, and volume fractions on the thermal conductivity are also studied. A good agreement is found between prediction results and experimental measurements. The successful prediction of thermal conductivity could help a better understanding and an improvement of thermal transport within composites and ceramics. read less NOT USED (low confidence) Y. Zhou, X. Gong, B. Xu, and M. Hu, “Decouple electronic and phononic transport in nanotwinned structures: a new strategy for enhancing the figure-of-merit of thermoelectrics.,” Nanoscale. 2017. link Times cited: 24 Abstract: Thermoelectric (TE) materials manifest themselves to enable … read moreAbstract: Thermoelectric (TE) materials manifest themselves to enable direct conversion of temperature differences to electric power and vice versa. Though remarkable advances have been achieved in the past decades for various TE systems, the energy conversion efficiency of TE devices, which is characterized by a dimensionless figure-of-merit (ZT = S2σT/(κel + κph)), generally remains a poor factor that severely limits TE devices' competitiveness and range of employment. The bottleneck for substantially boosting the ZT coefficient lies in the strong interdependence of the physical parameters involved in electronic (S and σ, and κel) and phononic (κph) transport. Herein, we propose a new strategy of incorporating nanotwinned structures to decouple electronic and phononic transport. Combining the new concept of nanotwinned structures with the previously widely used nanocrystalline approach, the power factor of the nanotwin-nanocrystalline Si heterostructures is enhanced by 120% compared to that of bulk crystalline Si, while the lattice thermal conductivity is reduced to a level well below the amorphous limit, yielding a theoretical limit of 0.52 and 0.9 for ZT coefficient at room temperature and 1100 K, respectively. This value is almost two orders of magnitude larger than that for bulk Si and twice that for polycrystalline Si. Even for the experimentally obtained nanotwin-nanocrystalline heterostructures (e.g. grain size of 5 nm), the ZT coefficient can be as high as 0.26 at room temperature and 0.7 at 1100 K, which is the highest ZT value among all Si-based bulk nanostructures found thus far. Such substantial improvement stems from two aspects: (1) the improvement in the power factor is caused due to an increase in the Seebeck coefficient (degeneracy of the band valley) and the enhancement of electrical conductivity (the reduction of the effective band mass) and (2) the significant reduction of the lattice thermal conductivity is mainly caused due to the extremely strong phonon-grain boundary and phonon-twin boundary scattering. Our results suggest that nanotwinned structures are excellent building blocks for enhancing TE performance in diamond-like semiconductors, and our study provides a new strategy for the innovative development of other TE materials. read less NOT USED (low confidence) S. J. Mahdizadeh and G. Akhlamadi, “Optimized Tersoff empirical potential for germanene.,” Journal of molecular graphics & modelling. 2017. link Times cited: 21 NOT USED (low confidence) D. Talwar, L. Wan, T. Cc, and F. Zc, “Assessing Biaxial Stress and Strain in 3C-SiC/Si (001) by RamanScattering Spectroscopy,” Journal of Material Sciences & Engineering. 2017. link Times cited: 5 Abstract: Highly strained 3C-SiC/Si (001) epilayers of different thick… read moreAbstract: Highly strained 3C-SiC/Si (001) epilayers of different thicknesses (0.1 μm-12.4 μm) prepared in a vertical reactor configuration by chemical vapor deposition (V-CVD) method were examined using Raman scattering spectroscopy (RSS). In the near backscattering geometry, our RSS results for “as-grown” epilayers revealed TO- and LO-phonon bands shifting towards lower frequencies by approximately ~2 cm-1 with respect to the “free-standing” films. Raman scattering data of optical phonons are carefully analyzed by using an elastic deformation theory with inputs of hydrostatic-stress coefficients from a realistic lattice dynamical approach that helped assess biaxial stress, inplane tensile- and normal compressive-strain, respectively. In each sample, the estimated value of strain is found at least two order of magnitude smaller than the one expected from lattice mismatch between the epilayer and substrate. This result has provided a strong corroboration to our recent average-t-matrix Green’s function theory of impurity vibrational modes – indicating that the high density of intrinsic defects at the 3C-SiC/Si interface are possily responsible for releasing the misfit stresses and strains. Unlike others, our RSS study in “as-grown” 3C-SiC/Si (001) has reiterated the fact that for ultrathin epilayers (d<0.4 μm) the optical modes of 3C-SiC are markedly indistinctive. The mechanism responsible for this behavior is identified and discussed. PACS: 78.20.-e 63.20.Pw 63.20.D. read less NOT USED (low confidence) S. Goel, S. Chavoshi, and A. Murphy, “Molecular dynamics simulation (MDS) to study nanoscale machining processes.” 2017. link Times cited: 2 Abstract: 1 Molecular dynamics simulation (MDS) to study nanoscale cut… read moreAbstract: 1 Molecular dynamics simulation (MDS) to study nanoscale cutting processes Saurav Goel1*, Saeed Zare Chavoshi2 and Adrian Murphy3 1Precision Engineering Institute, School of Aerospace, Transport and Manufacturing, Cranfield University, Cranfield, Bedfordshire, MK430AL, UK 2Mechanical Engineering Department, Imperial College London, London, SW7 2AZ, UK 3School of Mechanical and Aerospace Engineering, Queen’s University, Belfast, BT9 5AH, UK *Corresponding author Tel.: +44 1234754132, Email address: sgoel.diamond@gmail.com read less NOT USED (low confidence) S. Lindsey, G. Hobler, D. Maciążek, and Z. Postawa, “Simple model of surface roughness for binary collision sputtering simulations,” Nuclear Instruments & Methods in Physics Research Section B-beam Interactions With Materials and Atoms. 2017. link Times cited: 5 NOT USED (low confidence) X. Junfeng et al., “An atomic-level understanding of the strengthening mechanism of aluminum matrix composites reinforced by aligned carbon nanotubes,” Computational Materials Science. 2017. link Times cited: 52 NOT USED (low confidence) N. Liao, M. Zhang, H. Zhou, and W. Xue, “Modeling of amorphous SiCxO6/5 by classical molecular dynamics and first principles calculations,” Scientific Reports. 2017. link Times cited: 5 NOT USED (low confidence) H. Huan, B. Fu, and X. Ye, “The torsional mechanical properties of copper nanowires supported by carbon nanotubes,” Physics Letters A. 2017. link Times cited: 8 NOT USED (low confidence) G. Argentero et al., “Unraveling the 3D Atomic Structure of a Suspended Graphene/hBN van der Waals Heterostructure,” Nano Letters. 2017. link Times cited: 79 Abstract: In this work we demonstrate that a free-standing van der Waa… read moreAbstract: In this work we demonstrate that a free-standing van der Waals heterostructure, usually regarded as a flat object, can exhibit an intrinsic buckled atomic structure resulting from the interaction between two layers with a small lattice mismatch. We studied a freely suspended membrane of well-aligned graphene on a hexagonal boron nitride (hBN) monolayer by transmission electron microscopy (TEM) and scanning TEM (STEM). We developed a detection method in the STEM that is capable of recording the direction of the scattered electron beam and that is extremely sensitive to the local stacking of atoms. A comparison between experimental data and simulated models shows that the heterostructure effectively bends in the out-of-plane direction, producing an undulated structure having a periodicity that matches the moiré wavelength. We attribute this rippling to the interlayer interaction and also show how this affects the intralayer strain in each layer. read less NOT USED (low confidence) Y. Zhou, X. Zhang, and M. Hu, “Nonmonotonic Diameter Dependence of Thermal Conductivity of Extremely Thin Si Nanowires: Competition between Hydrodynamic Phonon Flow and Boundary Scattering.,” Nano letters. 2017. link Times cited: 50 Abstract: By carefully and systematically performing Green-Kubo equili… read moreAbstract: By carefully and systematically performing Green-Kubo equilibrium molecular dynamics simulations, we report that the thermal conductivity (κ) of Si nanowires (NWs) does not diverge but converges and increases steeply when NW diameter (D) becomes extremely small (dκ/dD < 0), a long debate of one-dimensional heat conduction in history. The κ of the thinnest possible Si NWs reaches a superhigh level that is as large as more than 1 order of magnitude higher than its bulk counterpart. The abnormality is explained in terms of the dominant normal (N) process (energy and momentum conservation) of low frequency acoustic phonons that induces hydrodynamic phonon flow in the Si NWs without being scattered. With D increasing, the downward shift of optical phonons triggers strong Umklapp (U) scattering with acoustic phonons and attenuates the N process, leading to the regime of phonon boundary scattering (dκ/dD < 0). The two competing mechanisms result in nonmonotonic diameter dependence of κ with minima at critical diameter of 2-3 nm. Our results unambiguously demonstrate the converged κ and the clear trend of κ ∼ D for extremely thin Si NWs by fully elucidating the competition between the hydrodynamic phonon flow and phonon boundary scattering. read less NOT USED (low confidence) F. Tavazza, B. Kuhr, D. Farkas, and L. Levine, “Ni Nanoindentation at the Nanoscale: Atomic Rearrangements at the Ni–C Interface,” Journal of Physical Chemistry C. 2017. link Times cited: 6 Abstract: As mechanical testing proceeds toward ever-decreasing length… read moreAbstract: As mechanical testing proceeds toward ever-decreasing length scales, the ultimate limit is the atomic scale. Here, we investigate the atomic-scale interactions that occur at the diamond–nickel interface during the earliest stages of a Ni nanoindentation measurement. Using molecular dynamics with a custom-designed empirical potential, we found that, irrespectively of the Ni orientation, the same Ni–C interfacial structure always formed between the substrate and the diamond indenter. As the indenter digs deeper into the specimen, the location of the Ni–C interface changes, but its structure never does. In addition, the local formation of this structure produces longer-range disorder that may affect the local stresses and activation barriers to dislocation nucleation. As this process requires relatively large atomic displacements of the Ni atoms for some Ni orientations, we used density functional theory calculations to validate and understand the process. read less NOT USED (low confidence) F. F. de Oliveira et al., “Tailoring spin defects in diamond by lattice charging,” Nature Communications. 2017. link Times cited: 88 NOT USED (low confidence) K. Gordiz and A. Henry, “Phonon transport at interfaces between different phases of silicon and germanium,” Journal of Applied Physics. 2017. link Times cited: 52 Abstract: Current knowledge and understanding of phonon transport at i… read moreAbstract: Current knowledge and understanding of phonon transport at interfaces are wholly based on the phonon gas model (PGM). However, it is difficult to rationalize the usage of the PGM for disordered materials, such as amorphous materials. Thus, there is essentially no intuition regarding interfaces with amorphous materials. Given this gap in understanding, herein we investigated heat conduction at different crystalline and amorphous Si/Ge interfaces using the recently developed interface conductance modal analysis method, which does not rely on the PGM and can therefore treat an interface with a disordered material. The results show that contrary to arguments based on lower mean free paths in amorphous materials, the interface conductances are quite high. The results also show that the interfacial modes of vibration in the frequency region of 12–13 THz are so important that perturbing the natural vibrations with velocity rescaling heat baths (i.e., in non-equilibrium molecular dynamics simulations) affects the... read less NOT USED (low confidence) C. Lin and Z. Rao, “Thermal conductivity enhancement of paraffin by adding boron nitride nanostructures: A molecular dynamics study,” Applied Thermal Engineering. 2017. link Times cited: 58 NOT USED (low confidence) J. Han, S. Xu, J. Sun, L. Fang, and H. Zhu, “Pressure-induced amorphization in the nanoindentation of single crystalline silicon,” RSC Advances. 2017. link Times cited: 18 Abstract: Large-scale molecular dynamics simulations of nanoindentatio… read moreAbstract: Large-scale molecular dynamics simulations of nanoindentation on a (100) oriented silicon surface were performed to investigate the mechanical behavior and phase transformation of single crystalline silicon. The direct crystalline-to-amorphous transformation is observed during the nanoindentation with a spherical indenter as long as the applied indentation strain or load is large enough. This amorphization is accompanied by a distinct discontinuity in the load–indentation strain curves, known as “pop-in”. Herein, we have demonstrated the pressure-induced amorphization processes via direct lattice distortion. Moreover, the combination of large shear stress and associated hydrostatic pressure facilitates this crystalline-to-amorphous transformation. The structural characteristics, phase distribution, and phase transformation path have also been discussed in this study. The present results provide a new insight into the mechanical behavior and phase transformation of monocrystalline silicon. read less NOT USED (low confidence) J. Zhang, “Size-dependent bending modulus of nanotubes induced by the imperfect boundary conditions,” Scientific Reports. 2016. link Times cited: 5 NOT USED (low confidence) I. Leven, R. Guerra, A. Vanossi, E. Tosatti, and O. Hod, “Multiwalled nanotube faceting unravelled.,” Nature nanotechnology. 2016. link Times cited: 43 NOT USED (low confidence) N. Liao, B. Zheng, H. Zhou, and W. Xue, “Effect of carbon segregation on performance of inhomogeneous SiC y O 6/5 as anode materials for lithium-ion battery: A first-principles study,” Journal of Power Sources. 2016. link Times cited: 26 NOT USED (low confidence) T. Saha, A. Bhowmick, T. Oda, T. Miyauchi, and N. Fujii, “Degradation of polyacrylic elastomers: Theoretical and experimental studies,” Polymer Degradation and Stability. 2016. link Times cited: 16 NOT USED (low confidence) M. Tavakol, M. Mahnama, and R. Naghdabadi, “Shock wave sintering of Al/SiC metal matrix nano-composites: A molecular dynamics study,” Computational Materials Science. 2016. link Times cited: 28 NOT USED (low confidence) S. Volz, “Relevant Semiempirical Potentials for Phonon Properties.” 2016. link Times cited: 1 NOT USED (low confidence) K. Miwa and H. Ohno, “Molecular dynamics study on β -phase vanadium monohydride with machine learning potential,” Physical Review B. 2016. link Times cited: 13 NOT USED (low confidence) H. Zhai and A. Alexandrova, “Ensemble-Average Representation of Pt Clusters in Conditions of Catalysis Accessed through GPU Accelerated Deep Neural Network Fitting Global Optimization.,” Journal of chemical theory and computation. 2016. link Times cited: 88 Abstract: We first report a global optimization approach based on GPU … read moreAbstract: We first report a global optimization approach based on GPU accelerated Deep Neural Network (DNN) fitting, for modeling metal clusters at realistic temperatures. The seven-layer multidimensional and locally connected DNN is combined with limited-step Density Functional Theory (DFT) geometry optimization to reduce the time cost of full DFT local optimization, which is considered to be the most time-consuming step in global optimization. An algorithm based on bond length distribution analysis is used to efficiently sample the configuration space and generate random initial structures. A structure similarity measurement method based on depth-first search is used to identify duplicates. The performance of the new approach is examined by the application to the global minimum searching for Pt9 and Pt13. The ensemble-average representations of the two clusters are constructed based on all geometrically different isomers, on which the structure transition is predicted at low and high temperatures, for Pt9 and Pt13 clusters, respectively. Finally, the ensemble-averaged vertical ionization potential changes when temperature increases, and the property in conditions of catalysis can be different from that evaluated at the global minimum structure. read less NOT USED (low confidence) C. Tomas, I. Suarez-Martinez, and N. Marks, “Graphitization of amorphous carbons: A comparative study of interatomic potentials,” Carbon. 2016. link Times cited: 160 NOT USED (low confidence) S. Sadeghzadeh, “Computational design of graphene sheets for withstanding the impact of ultrafast projectiles.,” Journal of molecular graphics & modelling. 2016. link Times cited: 17 NOT USED (low confidence) Y. Hong, N. Zhang, and L. Xiong, “Nanoscale plastic deformation mechanisms of single crystalline silicon under compression, tension and indentation.” 2016. link Times cited: 18 Abstract: Mechanical behavior and underlying nanoscale plastic deforma… read moreAbstract: Mechanical behavior and underlying nanoscale plastic deformation mechanisms of single crystalline silicon under compression, tension and indentation are investigated through molecular dynamics in this work. Simulation results show that phase transformation from diamond cubic Si-I to β-Sn is responsible for the plastic deformation behavior of Si both under compression and nanoindentation. A stress plateau is observed when the specimen is compressed uniaxially. Si-I to β-Sn phase transformation has been demonstrated to be responsible for such stress plateau. Periodic boundary condition is found not suitable to study the tensile strength of silicon pillars. A pop-in behavior is observed in the force–displacement curve of nanoindentation. It has been proved that this pop-in region is induced by Si-I to β-Sn phase transformation. Through tracking the atom stress, shear stress rather than normal stress is revealed to dominate the phase transformation process. During nanoindentation, to exclude size effect the substrate should be larger enough than the indenter. read less NOT USED (low confidence) J. Zhang, “Lattice mismatch induced curved configurations of hybrid boron nitride–carbon nanotubes,” Physica E-low-dimensional Systems & Nanostructures. 2016. link Times cited: 7 NOT USED (low confidence) B. Vasić, A. Matković, R. Gajić, and I. Stanković, “Wear properties of graphene edges probed by atomic force microscopy based lateral manipulation,” Carbon. 2016. link Times cited: 42 NOT USED (low confidence) M. B. Moghaddam, E. Goharshadi, and F. Moosavi, “Structural and transport properties and solubility parameter of graphene/glycerol nanofluids: A molecular dynamics simulation study,” Journal of Molecular Liquids. 2016. link Times cited: 21 NOT USED (low confidence) E. Jin et al., “Influence of helium atoms on the shear behavior of the fiber/matrix interphase of SiC/SiC composite,” Journal of Nuclear Materials. 2016. link Times cited: 4 NOT USED (low confidence) R. D’Souza and S. Mukherjee, “First principles calculation of thermoelectric parameters of Monolayer- and Bilayer-Graphene and Heterostructures of Graphene and h-BN,” Journal of Physics: Conference Series. 2016. link Times cited: 4 Abstract: Electrical conductivity and Seebeck coefficient were calcula… read moreAbstract: Electrical conductivity and Seebeck coefficient were calculated using Boltzmann transport theory based on first-principles bandstructure calculations for the monolayer- and bilayer-graphene. We also present calculations of the thermoelectric parameters of Graphene/h- BN/Graphene sandwiched heterostructures. These results will be discussed in the light of existing experimental data. read less NOT USED (low confidence) J. D. Lee and K. P. Robert, “Multiscale atomistic modeling of fracture subjected to cyclic loading.” 2016. link Times cited: 2 Abstract: It is an established fact that multiscale modeling is an eff… read moreAbstract: It is an established fact that multiscale modeling is an effective way of studying materials over a realistic length scale. In this work, we demonstrate the use of sequential and concurrent multiscale modeling to study the effect of cyclic loading on both the atomic and continuum regions, of graphene, a material which comes with its own set of unique properties. Moreover, to further strengthen this work, we have studied the temperature effects during the cyclic loading, by analyzing the effect of loading and varying temperature gradients. read less NOT USED (low confidence) D.-T. Nguyen and M.-Q. Le, “Mechanical properties of various two-dimensional silicon carbide sheets: An atomistic study,” Superlattices and Microstructures. 2016. link Times cited: 20 NOT USED (low confidence) O. Mykhailenko, “Комплексоутворення між двошаровими карбоновими нанотрубками та біс(циклопентадієніл)нікелем за типом «гість–хазяїн».” 2016. link Times cited: 0 Abstract: Unique physical properties of multi-walled nanosystems have … read moreAbstract: Unique physical properties of multi-walled nanosystems have been the subject of keen interest lately. Their specific energy-band structures with a zero band gap and linear dependence of electron and hole energy spectrum on the wave-vector cause the electric charges to behave like relativist particles with zero effective mass. Anomalous transportation and field effects open a wide prospect of their applying in nanoelectronics. Such nanostructures are assumed to be promising spintronics materials due to the long electron free path, weak spin-orbital interaction and the long spin scattering. What is more, the chemical or physical modification of multi-walled nanosystems enables to reveal their new extraordinary features. Thus, intercalation with molecules allows to change the Fermi level position, relative electron and hole concentration without considerable changes in energy-band structure of source nanomaterials. On the other hand, unique optical, electrical and magnetic, and also biological behaviour of cyclopentadienyl complexes stimulates creation on their base of intercalates with multi-walled CNT, since the capability of these complexes to coordinate with MWCNT allows to obtain new materials as effective elements for photo- and magnetosensitive devices, drug delivery, imaging and therapy, as well to use these materials as an antidetonant in motor and aviation fuels. By employing the methods of MM+, РМ3 and Monte-Carlo, there has been studied the positioning of molecules of bis(cyclopentadienyl)nickel in a double-walled (5,5)@(10,10) carbon nanotube depending on intercalate concentration and intercalation temperature. The temperature increase (over ~455 K) causes gradual bond ruining followed by extrusion of interwall intercalate. Further temperature increase up to 620 K is characterised with intercalate external surface desorption, stabilising the whole system and keeping the interwall intercalate only. There have been calculated the UV-spectra for (5,5)@(10,10) DWCNT depending on the intercalate concentration as well as an association constant of the system which makes 36,2 l·mol -1 . read less NOT USED (low confidence) L. Jia, S. Ju, X. Liang, and X. Zhang, “Tuning phonon transmission and thermal conductance by roughness at rectangular and triangular Si/Ge interface,” Materials Research Express. 2016. link Times cited: 8 Abstract: Using the atomistic Green’s functions method in combination … read moreAbstract: Using the atomistic Green’s functions method in combination with the Landauer formula, we show that the phonon transmission and thermal conductance of periodic rectangular-shaped and triangular-shaped Si/Ge interfaces are both enhanced and tunable by roughness. For triangular-shaped interface, there is maximum phonon transmission and conductance with increasing roughness height, and the conductance can be tuned maximally by 22.3% compared with the flat interface. The maximum conductance of rectangular-shaped interface is enhanced by about 11.1%. The competing mechanisms between the broadening frequency transport window of rough interface and the increasing diffusing phonon scattering at the interface with higher roughness introduce the maximum transmission and conductance. Similar result is also obtained in non-periodic interfaces. The presented results provide insights into the thermal design of interfaces in nanoscale devices. read less NOT USED (low confidence) S. Ju, T. Shiga, L. Feng, Z. Hou, K. Tsuda, and J. Shiomi, “Designing Nanostructures for Phonon Transport via Bayesian Optimization,” Physical Review X. 2016. link Times cited: 187 Abstract: Phonon transport---the movement of vibrational wave packets … read moreAbstract: Phonon transport---the movement of vibrational wave packets in a solid---in nanostructures is a key element in controlling solid heat conduction, but it remains a complex design challenge. A new framework uses informatics and phonon transport calculations to greatly accelerate the design process and reveals nonintuitive structures that are more effective than their traditional counterparts. read less NOT USED (low confidence) Y. Zhou and M. Hu, “Record Low Thermal Conductivity of Polycrystalline Si Nanowire: Breaking the Casimir Limit by Severe Suppression of Propagons.,” Nano letters. 2016. link Times cited: 55 Abstract: Thermoelectrics offer an attractive pathway for addressing a… read moreAbstract: Thermoelectrics offer an attractive pathway for addressing an important niche in the globally growing landscape of energy demand. Nanoengineering existing low-dimensional thermoelectric materials pertaining to realizing fundamentally low thermal conductivity has emerged as an efficient route to achieve high energy conversion performance for advanced thermoelectrics. In this paper, by performing nonequilibrium and Green-Kubo equilibrium molecular dynamics simulations we report that the thermal conductivity of Si nanowires (NWs) in polycrystalline form can reach a record low value substantially below the Casimir limit, a theory of diffusive boundary limit that regards the direction-averaged mean free path is limited by the characteristic size of the nanostructures. The astonishingly low thermal conductivity of polycrystalline Si NW is 269 and 77 times lower with respect to that of bulk Si and pristine Si NW, respectively, and is even only about one-third of the value of the purely amorphous Si NW at room temperature. By examining the mode level phonon behaviors including phonon group velocities, lifetime, and so forth, we identify the mechanism of breaking the Casimir limit as the strong localization of the middle and high frequency phonon modes, which leads to a prominent decrease of effective mean free path of the heat carriers including both propagons and diffusons. The contribution of the propagons to the overall thermal transport is further quantitatively characterized and is found to be dramatically suppressed in polycrystalline Si NW form as compared with bulk Si, perfect Si NW, and pure amorphous Si NW. Consequently, the diffusons, which transport the heat through overlap with other vibrations, carry the majority of the heat in polycrystalline Si NWs. We also proposed approach of introducing "disorder" in the polycrystalline Si NWs that could eradicate the contribution of propagons to achieve an even lower thermal conductivity than that ever thought possible. Our investigation provides a deep insight into the thermal transport in polycrystalline NWs and offers a promising strategy to construct a new kind of semiconducting thermoelectric NW with high figure of merit. read less NOT USED (low confidence) S. Nakagawa, “What promotes derected self assembly (DSA),” Nuclear Instruments & Methods in Physics Research Section B-beam Interactions With Materials and Atoms. 2016. link Times cited: 0 NOT USED (low confidence) J. Godet, C. Furgeaud, L. Pizzagalli, and M. Demkowicz, “Uniform tensile elongation in Au–Si core–shell nanowires,” Extreme Mechanics Letters. 2016. link Times cited: 10 NOT USED (low confidence) H. N. Pishkenari and P. G. Ghanbari, “Vibrational properties of C60: A comparison among different inter-atomic potentials,” Computational Materials Science. 2016. link Times cited: 11 NOT USED (low confidence) S. Sadeghzadeh and L.-L. Liu, “Resistance and rupture analysis of single- and few-layer graphene nanosheets impacted by various projectiles,” Superlattices and Microstructures. 2016. link Times cited: 22 NOT USED (low confidence) T. Kumagai, K. Nakamura, S. Yamada, and T. Ohnuma, “Effects of guest atomic species on the lattice thermal conductivity of type-I silicon clathrate studied via classical molecular dynamics,” Journal of Chemical Physics. 2016. link Times cited: 4 Abstract: The effects of guest atomic species in Si clathrates on the … read moreAbstract: The effects of guest atomic species in Si clathrates on the lattice thermal conductivity were studied using classical molecular dynamics calculations. The interaction between a host atom and a guest atom was described by the Morse potential function while that between host atoms was described by the Tersoff potential. The parameters of the potentials were newly determined for this study such that the potential curves obtained from first-principles calculations for the insertion of a guest atom into a Si cage were successfully reproduced. The lattice thermal conductivities were calculated by using the Green-Kubo method. The experimental lattice thermal conductivity of Ba8Ga16Si30 can be successfully reproduced using the method. As a result, the lattice thermal conductivities of type-I Si clathrates, M8Si46 (M = Na, Mg, K, Ca Rb, Sr, Cs, or Ba), were obtained. It is found that the lattice thermal conductivities of M8Si46, where M is IIA elements (i.e., M = Mg, Ca, Sr, or Ba) tend to be lower than those of M... read less NOT USED (low confidence) N. Liao, B. Zheng, M. Zhang, and W. Xue, “Atomic investigation on reversible lithium storage in amorphous silicon oxycarbide as a high power anode material,” Journal of Materials Chemistry. 2016. link Times cited: 50 Abstract: Silicon oxycarbide (SiCO) has a remarkable reversible capaci… read moreAbstract: Silicon oxycarbide (SiCO) has a remarkable reversible capacity of lithium and is believed to be a promising anode material for the new generation of lithium-ion batteries. Although current experiments have provided some information on lithium storage in SiCO, further study on the origin of reversible capacity needs to be conducted at the atomic scale. In this work, first principles calculations are used to investigate reversible lithium storage in five SiCO structures with different compositions. Based on lithiated structures, the Si–O bond tends to break and Li2O forms at the beginning of lithiation and then LixO and LiySi form with increasing Li concentration, which make a major contribution to the Li capacity. The carbon atoms do not attract lithium but form a stable C–C domain to maintain the stability of the lithiated system; this is also verified by the root mean-square deviation of C. The free volume of the structures tends to decrease with increasing carbon content, implying that the void is not the major resource for lithium storage. Stoichiometric glass without free carbon presents very low reversible capacity. The reversible capacity tends to increase with higher carbon concentration; however, it would reach a maximum value and begin to decrease when the carbon content increases further. read less NOT USED (low confidence) O. Strickson, “Numerical constitutive modelling for continuum mechanics simulation.” 2016. link Times cited: 0 NOT USED (low confidence) X. Liu, G. Zhang, and Y.-W. Zhang, “Topological Defects at the Graphene/h-BN interface Abnormally Enhance Its Thermal Conductance.,” Nano letters. 2016. link Times cited: 110 Abstract: Low thermal conductance across interface is often the limiti… read moreAbstract: Low thermal conductance across interface is often the limiting factor in managing heat in many advanced device applications. The most commonly used approach to enhance the thermal conductance is to reduce/eliminate the interfacial structural defects. Using a graphene/h-BN (Gr/h-BN) interface, we show surprisingly that topological defects are able to enhance the thermal conductance across the interface. It is found that the phonon transmission across the Gr/h-BN interface with 5|7 defects is higher than that of the pristine interface, which is in strong contrast to the common notion that interface defects promote phonon scattering. By analyzing the strain distribution and phonon vibrational spectra, we find that this abnormal enhancement in interfacial thermal conductance originates from the localization of the stress fields arising from misfit dislocations and their out-of-plane deformations at the interface. In the presence of the defects, the overall mismatch strain is reduced. In addition, the out-of-plane deformations screen the long-ranged dislocation strain fields, resulting in the stress fields to be localized only at the cores of the defects. This abnormal mechanism provides a new dimension to enhance the interfacial thermal conductance in two-dimensional heterostructures. read less NOT USED (low confidence) S. Fong et al., “Thermal conductivity measurement of amorphous dielectric multilayers for phase-change memory power reduction,” Journal of Applied Physics. 2016. link Times cited: 23 Abstract: In this work, we investigate the temperature-dependent therm… read moreAbstract: In this work, we investigate the temperature-dependent thermal conductivities of few nanometer thick alternating stacks of amorphous dielectrics, specifically SiO2/Al2O3 and SiO2/Si3N4. Experiments using steady-state Joule-heating and electrical thermometry, while using a micro-miniature refrigerator over a wide temperature range (100–500 K), show that amorphous thin-film multilayer SiO2/Si3N4 and SiO2/Al2O3 exhibit through-plane room temperature effective thermal conductivities of about 1.14 and 0.48 W/(m × K), respectively. In the case of SiO2/Al2O3, the reduced conductivity is attributed to lowered film density (7.03 → 5.44 × 1028 m–3 for SiO2 and 10.2 → 8.27 × 1028 m–3 for Al2O3) caused by atomic layer deposition of thin-films as well as a small, finite, and repeating thermal boundary resistance (TBR) of 1.5 m2 K/GW between dielectric layers. Molecular dynamics simulations reveal that vibrational mismatch between amorphous oxide layers is small, and that the TBR between layers is largely due to imperf... read less NOT USED (low confidence) L. Bai, N. Srikanth, H. Wu, Y. Liu, B. Liu, and K. Zhou, “Investigation on tensile behaviors of diamond-like carbon films,” Journal of Non-crystalline Solids. 2016. link Times cited: 34 NOT USED (low confidence) R. Aghababaei, D. Warner, and J. Molinari, “Critical length scale controls adhesive wear mechanisms,” Nature Communications. 2016. link Times cited: 201 NOT USED (low confidence) M. Okugawa, R. Nakamura, M. Ishimaru, K. Watanabe, H. Yasuda, and H. Numakura, “Structural transition in sputter-deposited amorphous germanium films by aging at ambient temperature,” Journal of Applied Physics. 2016. link Times cited: 17 Abstract: The structure of amorphous Ge (a-Ge) films prepared by sputt… read moreAbstract: The structure of amorphous Ge (a-Ge) films prepared by sputter-deposition and the effects of aging at ambient temperature and pressure were studied by pair-distribution-function (PDF) analysis from electron scattering and molecular dynamics simulations. The PDFs of the as-deposited and aged samples for 3–13 months showed that the major peaks for Ge-Ge bonds decrease in intensity and broaden with aging for up to 7 months. In the PDFs of a-Ge of molecular dynamics simulation obtained by quenching liquid at different rates, the major peak intensities of a slowly cooled model are higher than those of a rapidly cooled model. Analyses on short- and medium-range configurations show that the slowly cooled model includes a certain amount of medium-range ordered (MRO) clusters, while the rapidly cooled model includes liquid-like configurations rather than MRO clusters. The similarity between experimental and computational PDFs implies that as-deposited films are similar in structure to the slowly cooled model, wher... read less NOT USED (low confidence) R. Dettori, C. Melis, R. Rurali, and L. Colombo, “Thermal rectification in silicon by a graded distribution of defects,” Journal of Applied Physics. 2016. link Times cited: 30 Abstract: We discuss about computer experiments based on nonequilibriu… read moreAbstract: We discuss about computer experiments based on nonequilibrium molecular dynamics simulations providing evidence that thermal rectification can be obtained in bulk Si by a non-uniform distribution of defects. We consider a graded population of both Ge substitutional defects and nanovoids, distributed along the direction of an applied thermal bias, and predict a rectification factor comparable to what is observed in other low–dimensional Si–based nanostructures. By considering several defect distribution profiles, thermal bias conditions, and sample sizes, the present results suggest that a possible way for tuning the thermal rectification is by defect engineering. read less NOT USED (low confidence) N. Zhou, X. Wu, X. Wei, L. Zhou, Y. Wan, and D. Hu, “A molecular dynamics study of nucleation of dislocation in growth of silicon from melt,” Journal of Crystal Growth. 2016. link Times cited: 14 NOT USED (low confidence) G. Sosso et al., “Crystal Nucleation in Liquids: Open Questions and Future Challenges in Molecular Dynamics Simulations,” Chemical Reviews. 2016. link Times cited: 553 Abstract: The nucleation of crystals in liquids is one of nature’s mos… read moreAbstract: The nucleation of crystals in liquids is one of nature’s most ubiquitous phenomena, playing an important role in areas such as climate change and the production of drugs. As the early stages of nucleation involve exceedingly small time and length scales, atomistic computer simulations can provide unique insights into the microscopic aspects of crystallization. In this review, we take stock of the numerous molecular dynamics simulations that, in the past few decades, have unraveled crucial aspects of crystal nucleation in liquids. We put into context the theoretical framework of classical nucleation theory and the state-of-the-art computational methods by reviewing simulations of such processes as ice nucleation and the crystallization of molecules in solutions. We shall see that molecular dynamics simulations have provided key insights into diverse nucleation scenarios, ranging from colloidal particles to natural gas hydrates, and that, as a result, the general applicability of classical nucleation theory has been repeatedly called into question. We have attempted to identify the most pressing open questions in the field. We believe that, by improving (i) existing interatomic potentials and (ii) currently available enhanced sampling methods, the community can move toward accurate investigations of realistic systems of practical interest, thus bringing simulations a step closer to experiments. read less NOT USED (low confidence) K. Hahn, S. Cecchi, and L. Colombo, “Effect of asymmetric concentration profile on thermal conductivity in Ge/SiGe superlattices,” Applied Physics Letters. 2016. link Times cited: 13 Abstract: The effect of the chemical composition in Si/Ge-based superl… read moreAbstract: The effect of the chemical composition in Si/Ge-based superlattices on their thermal conductivity has been investigated using molecular dynamics simulations. Simulation cells of Ge/SiGe superlattices have been generated with different concentration profiles such that the Si concentration follows a step-like, a tooth-saw, a Gaussian, and a gamma-type function in direction of the heat flux. The step-like and tooth-saw profiles mimic ideally sharp interfaces, whereas Gaussian and gamma-type profiles are smooth functions imitating atomic diffusion at the interface as obtained experimentally. Symmetry effects have been investigated comparing the symmetric profiles of the step-like and the Gaussian function to the asymmetric profiles of the tooth-saw and the gamma-type function. At longer sample length and similar degree of interdiffusion, the thermal conductivity is found to be lower in asymmetric profiles. Furthermore, it is found that with smooth concentration profiles where atomic diffusion at the interface... read less NOT USED (low confidence) K. Firestein et al., “Structural analysis and atomic simulation of Ag/BN nanoparticle hybrids obtained by Ag ion implantation.” 2016. link Times cited: 19 NOT USED (low confidence) K. Gordiz and A. Henry, “Interface conductance modal analysis of lattice matched InGaAs/InP,” Applied Physics Letters. 2016. link Times cited: 14 Abstract: We studied the heat conduction at InGaAs/InP interfaces and … read moreAbstract: We studied the heat conduction at InGaAs/InP interfaces and found that the total value of interface conductance was quite high ∼830 MW m−2 K−1. The modal contributions to the thermal interface conductance (TIC) were then investigated to determine the mode responsible. Using the recently developed interface conductance modal analysis method, we showed that more than 70% of the TIC arises from extended modes in the system. The lattice dynamics calculations across the interface revealed that, unlike any other interfaces previously studied, the different classes of vibration around the interface of InGaAs/InP naturally segregate into distinct regions with respect to frequency. In addition, interestingly, the entire region of frequency overlap between the sides of the interface is occupied by extended modes, whereby the two materials vibrate together with a single frequency. We also mapped the correlations between modes, which showed that the contribution by extended modes to the TIC primarily arises from coup... read less NOT USED (low confidence) Y. Han and V. Tomar, “An investigation into the influence of grain boundary misorientation on the tensile strength of SiC bicrystals,” Mechanics of Advanced Materials and Structures. 2016. link Times cited: 6 Abstract: ABSTRACT In this work, molecular dynamics (MD) and Car-Parri… read moreAbstract: ABSTRACT In this work, molecular dynamics (MD) and Car-Parrinello molecular dynamics (CPMD) simulation-based analyses are performed to understand the influence of grain boundary (GB) misorientation on the tensile strength of SiC bicrystals. The tensile strength is governed by the changes in electron density and bond strength of atoms in GBs. An investigation of dislocation activity during mechanical deformation shows that the extent of the propagation of dislocations across the bicrystal grains is directly proportional to the extent of GB misorientation. An analytical relation that predicts the tensile strength as a function of GB misorientation is developed. read less NOT USED (low confidence) T. Lelièvre and G. Stoltz, “Partial differential equations and stochastic methods in molecular dynamics*,” Acta Numerica. 2016. link Times cited: 174 Abstract: The objective of molecular dynamics computations is to infer… read moreAbstract: The objective of molecular dynamics computations is to infer macroscopic properties of matter from atomistic models via averages with respect to probability measures dictated by the principles of statistical physics. Obtaining accurate results requires efficient sampling of atomistic configurations, which are typically generated using very long trajectories of stochastic differential equations in high dimensions, such as Langevin dynamics and its overdamped limit. Depending on the quantities of interest at the macroscopic level, one may also be interested in dynamical properties computed from averages over paths of these dynamics. This review describes how techniques from the analysis of partial differential equations can be used to devise good algorithms and to quantify their efficiency and accuracy. In particular, a crucial role is played by the study of the long-time behaviour of the solution to the Fokker–Planck equation associated with the stochastic dynamics. read less NOT USED (low confidence) H. Guo et al., “Study of Ehrlich-Schwoebel Barrier in 4H-SiC Epitaxial Growths by Molecular Statics Method,” Materials Science Forum. 2016. link Times cited: 1 Abstract: A molecular statics method has been used to examine the Ehrl… read moreAbstract: A molecular statics method has been used to examine the Ehrlich-Schwoebel (ES) barrier for an adatom of 4H-SiC to diffuse from the {0001} to the {11-20} facet. As the calculated results shown, for the C-terminated surface, the inverse ES barrier exist for the silicon adatom, which could cause the step bunching; for the Si-terminated surface, ES barrier exist for the carbon adatom, which could cause the step meandering and result in the transition of step-flow growth to 2D-nucleation growth. Simultaneously, the C-terminated surface is more stable than the Si-terminated surface, which may be one reason that the quality of film grown on the carbon facet substrate is better. read less NOT USED (low confidence) S. Shadlou and L. Wegner, “Atomistic investigation of the effect of nano-structural shape on the mechanical response of SiC/Cu interpenetrating phase nanocomposites,” Computational Materials Science. 2016. link Times cited: 7 NOT USED (low confidence) J. Wang, X. Zhang, and F. Fang, “Molecular dynamics study on nanometric cutting of ion implanted silicon,” Computational Materials Science. 2016. link Times cited: 46 NOT USED (low confidence) G. Balasubramanian, “Mechanics of Thermal Transport in Mass‐Disordered Nanostructures.” 2016. link Times cited: 0 NOT USED (low confidence) D. Papavassiliou, K. Bui, and H. Nguyen, “11. Thermal Boundary Resistance Effects in Carbon Nanotube Composites.” 2016. link Times cited: 1 NOT USED (low confidence) G. Ghadyani and M. Rahmandoust, “Computational Nanomechanics Investigation Techniques.” 2016. link Times cited: 1 Abstract: Today, many fields of rapidly growing research about nanomat… read moreAbstract: Today, many fields of rapidly growing research about nanomaterials and nanodevices are dependent on a combined detailed investigation between nanoscience and engineering. Hence, current nanotechnological engineering requires a vital linkage between fundamental research about the nature of the materials, which should be sought in nanoscience, and engineering investigation tools through simulations and modeling in computational nanomechanics. This linkage is necessary to obtain a comprehensive picture of the properties and characteristics of the studied nanomaterials and nanodevices under various conditions. In this chapter, a review of the fundamental concepts of the Newtonian mechanics, including Lagrangian and Hamiltonian functions is provided first. The developed equations of motion of a system with interacting material points are introduced then. After that, based on the physics of nanosystems, which can be applicable in any material phases, basic concepts of molecular dynamic simulations are introduced. Some interatomic potentials from which Morse function is recognized as an accurate definition are discussed in the next step for defining the natural bond length. With the purpose of decreasing computational effort, the cut-off radius is considered to limit atomic interactions to immediate neighbors only. The link between molecular dynamics and quantum mechanics is then explained using a simple classical example of two interacting hydrogen atoms, and the major limitations of the simulation method are discussed. Length and timescale limitation of molecular dynamics simulation technique are the major reasons behind opting multiscale simulations rather than molecular dynamics, which are explained briefly at the final sections of this chapter. read less NOT USED (low confidence) L. Gai, Y. Shin, M. Raju, A. Duin, and S. Raman, “Atomistic Adsorption of Oxygen and Hydrogen on Platinum Catalysts by Hybrid Grand Canonical Monte Carlo/Reactive Molecular Dynamics,” Journal of Physical Chemistry C. 2016. link Times cited: 35 Abstract: The reactivity of a metal catalyst depends strongly on the a… read moreAbstract: The reactivity of a metal catalyst depends strongly on the adsorbate coverage, making it essential for the reactivity models to account for the in situ structures and properties of the catalyst under reaction conditions. The use of first principle based thermodynamic approaches to describe adsorbate–adsorbate interaction though attractive for its technical rigor is tedious and computationally demanding especially for metal nanoparticles. With the advent of empirical reactive force fields (ReaxFF), there is a great deal of interest to advance simulation approaches like hybrid grand canonical Monte Carlo reactive molecular dynamics (GCMC/RMD) that enable efficient use of ReaxFF to model the adsorptive states. The predictive ability of GCMC/RMD relies upon the quality of the force field, which in turn depends upon the training set used for its parametrization. To this end, we investigate the adsorption behavior of O and H over the Pt catalysts using the newly developed Pt/O/H ReaxFF. We assess the thermodyna... read less NOT USED (low confidence) Y. Zhou, Y. Chen, and M. Hu, “Strong Surface Orientation Dependent Thermal Transport in Si Nanowires,” Scientific Reports. 2016. link Times cited: 17 NOT USED (low confidence) Y. Yang, L. Huang, and Y. Shi, “Adhesion suppresses atomic wear in single-asperity sliding,” Wear. 2016. link Times cited: 38 NOT USED (low confidence) A. Ostadhossein, S.-Y. Kim, E. D. Cubuk, Y. Qi, and A. V. van Duin, “Atomic Insight into the Lithium Storage and Diffusion Mechanism of SiO2/Al2O3 Electrodes of Lithium Ion Batteries: ReaxFF Reactive Force Field Modeling.,” The journal of physical chemistry. A. 2016. link Times cited: 76 Abstract: Atomically deposited layers of SiO2 and Al2O3 have been reco… read moreAbstract: Atomically deposited layers of SiO2 and Al2O3 have been recognized as promising coating materials to buffer the volumetric expansion and capacity retention upon the chemo-mechanical cycling of the nanostructured silicon- (Si-) based electrodes. Furthermore, silica (SiO2) is known as a promising candidate for the anode of next-generation lithium ion batteries (LIBs) due to its superior specific charge capacity and low discharge potential similar to Si anodes. In order to describe Li-transport in mixed silica/alumina/silicon systems we developed a ReaxFF potential for Li-Si-O-Al interactions. Using this potential, a series of hybrid grand canonical Monte Carlo (GCMC) and molecular dynamic (MD) simulations were carried out to probe the lithiation behavior of silica structures. The Li transport through both crystalline and amorphous silica was evaluated using the newly optimized force field. The anisotropic diffusivity of Li in crystalline silica cases is demonstrated. The ReaxFF diffusion study also verifies the transferability of the new force field from crystalline to amorphous phases. Our simulation results indicates the capability of the developed force field to examine the energetics and kinetics of lithiation as well as Li transportation within the crystalline/amorphous silica and alumina phases and provide a fundamental understanding on the lithiation reactions involved in the Si electrodes covered by silica/alumina coating layers. read less NOT USED (low confidence) H. Wang, W. Zhang, C.-B. Wang, J. Ma, and P. Huai, “Molecular dynamics study of thermal transport across grain boundaries in silicon carbide nanorod,” Materials Research Express. 2016. link Times cited: 5 Abstract: The thermal transport behaviors of ⟨ 011 ⟩ ?> Σ3, Σ9 and Σ11… read moreAbstract: The thermal transport behaviors of ⟨ 011 ⟩ ?> Σ3, Σ9 and Σ11 grain boundaries (GBs) in silicon carbide nanorod are investigated by using nonequilibrium molecular dynamics (NEMD) simulation. Temperature changes suddenly at the boundaries if a constant heat flux is assumed. The thermal conductance of these GBs is found several times larger than that of interfaces of other materials previously reported. Furthermore the interfacial thermal resistance increases with elevated temperature above 500 K. Our results give theoretical guidance to understand the underlying thermal transport mechanism in silicon carbide, and may be helpful to design silicon carbide materials for high temperature applications. read less NOT USED (low confidence) G. Rajasekaran, R. Kumar, and A. Parashar, “Tersoff potential with improved accuracy for simulating graphene in molecular dynamics environment,” Materials Research Express. 2016. link Times cited: 71 Abstract: Graphene is an elementary unit for various carbon based nano… read moreAbstract: Graphene is an elementary unit for various carbon based nanostructures. The recent technological developments have made it possible to manufacture hybrid and sandwich structures with graphene. In order to model these nanostructures in atomistic scale, a compatible interatomic potential is required to successfully model these nanostructures. In this article, an interatomic potential with modified cut-off function for Tersoff potential was proposed to avoid overestimation and also to predict the realistic mechanical behavior of single sheet of graphene. In order to validate the modified form of cut-off function for Tersoff potential, simulations were performed with different set of temperatures and strain rates, and results were made to compare with available experimental data and molecular dynamics simulation results obtained with the help of other empirical interatomic potentials. read less NOT USED (low confidence) K. Gordiz and A. Henry, “Phonon Transport at Crystalline Si/Ge Interfaces: The Role of Interfacial Modes of Vibration,” Scientific Reports. 2016. link Times cited: 79 NOT USED (low confidence) P. V. Negrón-Marrero and M. López-Serrano, “Minimal Energy Configurations of Finite Molecular Arrays,” Symmetry. 2016. link Times cited: 1 Abstract: In this paper, we consider the problem of characterizing the… read moreAbstract: In this paper, we consider the problem of characterizing the minimum energy configurations of a finite system of particles interacting between them due to attractive or repulsive forces given by a certain intermolecular potential. We limit ourselves to the cases of three particles arranged in a triangular array and that of four particles in a tetrahedral array. The minimization is constrained to a fixed area in the case of the triangular array, and to a fixed volume in the tetrahedral case. For a general class of intermolecular potentials we give conditions for the homogeneous configuration (either an equilateral triangle or a regular tetrahedron) of the array to be stable that is, a minimizer of the potential energy of the system. To determine whether or not there exist other stable states, the system of first-order necessary conditions for a minimum is treated as a bifurcation problem with the area or volume variable as the bifurcation parameter. Because of the symmetries present in our problem, we can apply the techniques of equivariant bifurcation theory to show that there exist branches of non-homogeneous solutions bifurcating from the trivial branch of homogeneous solutions at precisely the values of the parameter of area or volume for which the homogeneous configuration changes stability. For the triangular array, we construct numerically the bifurcation diagrams for both a Lennard–Jones and Buckingham potentials. The numerics show that there exist non-homogeneous stable states, multiple stable states for intervals of values of the area parameter, and secondary bifurcations as well. read less NOT USED (low confidence) W. Wu, L. Zhang, S. Liu, H. Ren, X. Zhou, and H. Li, “Liquid-Liquid Phase Transition in Nanoconfined Silicon Carbide.,” Journal of the American Chemical Society. 2016. link Times cited: 24 Abstract: We report theoretical evidence of a liquid-liquid phase tran… read moreAbstract: We report theoretical evidence of a liquid-liquid phase transition (LLPT) in liquid silicon carbide under nanoslit confinement. The LLPT is characterized by layering transitions induced by confinement and pressure, accompanying the rapid change in density. During the layering transition, the proportional distribution of tetracoordinated and pentacoordinated structures exhibits remarkable change. The tricoordinated structures lead to the microphase separation between silicon (with the dominant tricoordinated, tetracoordinated, and pentacoordinated structures) and carbon (with the dominant tricoordinated structures) in the layer close to the walls. A strong layer separation between silicon atoms and carbon atoms is induced by strong wall-liquid forces. Importantly, the pressure confinement phase diagram with negative slopes for LLPT lines indicates that, under high pressure, the LLPT is mainly confinement-induced, but under low pressure, it becomes dominantly pressure-induced. read less NOT USED (low confidence) É. Maras, O. Trushin, A. Stukowski, T. Ala‐Nissila, and H. Jónsson, “Global transition path search for dislocation formation in Ge on Si(001),” Comput. Phys. Commun. 2016. link Times cited: 281 NOT USED (low confidence) J. Andrejevic, J. M. Stevenson, and P. Clancy, “Simple Molecular Reactive Force Field for Metal-Organic Synthesis.,” Journal of chemical theory and computation. 2016. link Times cited: 2 Abstract: For colloidal quantum dots to transition from research labor… read moreAbstract: For colloidal quantum dots to transition from research laboratories to deployment as optical and electronic products, there will be a need to scale-up their production to large-scale manufacturing processes. This demand increases the need to understand their formation via a molecular representation of the nucleation of lead sulfide (PbS) quantum dot systems passivated by lead oleate complexes. We demonstrate the effectiveness of a new type of reactive potential, custom-made for this system, that is drawn from simple Morse, Lennard-Jones, and Coulombic components, which can reproduce reactions across a broad range of PbS quantum dot sizes with good accuracy. We validate the capability of this model to capture reactive systems by comparison to ab initio calculations for a reaction between two dots. read less NOT USED (low confidence) Y. Zhou, X. Zhang, and M. Hu, “An excellent candidate for largely reducing interfacial thermal resistance: a nano-confined mass graded interface.,” Nanoscale. 2016. link Times cited: 42 Abstract: Pursuing extremely low interfacial thermal resistance has lo… read moreAbstract: Pursuing extremely low interfacial thermal resistance has long been the task of many researchers in the area of nano-scale heat transfer, in particular pertaining to improve heat dissipation performance in electronic cooling. While it is well known and documented that confining a macroscopic third layer between two dissimilar materials usually increases the overall interfacial thermal resistance, no research has realized the fundamental decrease in resistance so far. By performing nonequilibrium molecular dynamics simulations, we report that the overall interfacial thermal resistance can be reduced by 6 fold by confining mass graded materials with thickness of the order of nanometers. As comparison we also studied the thermal transport across the perfectly abrupt interface and the widely used alloyed (rough) interface, which shows an opposing and significantly large increase in the overall thermal resistance. With the help of frequency dependent interfacial thermal conductance and wave packet dynamics simulation, different mechanisms governing the heat transfer across these three types of interfaces are identified. It is found that for the rough interface there are two different regimes of interfacial heat transfer, which originates from the competition between phonon scattering and the thickness of the interface. The mechanism of dramatically improved interfacial heat transfer across the nano-confined mass graded interface resides in the minor phonon reflection when the phonons first reach the mass graded area and the rare occurrence of phonon scattering in the subsequent interior region. The phonons are found to be gradually truncated by the geometric interfaces and can travel through the mass graded layer with a high transmission coefficient, benefited from the small mass mismatch between two neighboring layers in the interfacial region. Our findings provide deep insight into the phonon transport across nano-confined mass graded layers and also offer significant guidance for designing advanced thermal interface materials. read less NOT USED (low confidence) A. Chandra, P. Patra, and B. Bhattacharya, “Thermomechanical buckling of boron nitride nanotubes using molecular dynamics,” Materials Research Express. 2016. link Times cited: 19 Abstract: We study the thermal buckling behavior of precompressed boro… read moreAbstract: We study the thermal buckling behavior of precompressed boron-nitride nanotubes (BNNTs) using molecular dynamics simulations with Tersoff interatomic potential. We compute the critical buckling strains at near-zero temperature, and subsequently precompress the nanotubes at a certain fraction of this value followed by temperature ramping. The critical buckling temperature, Tcr, is marked by a sudden decrease of the internal force. We observe that (i) at small to moderate lengths, Tcr is higher for chiral nanotubes than for either armchair or zigzag nanotubes, (ii) Tcr decreases with increasing diameter unlike in thermal disintegration where disintegration temperatures rise with increasing diameter, and (iii) armchair nanotubes have an optimal length for which Tcr is maximum. We qualitatively explain the reasons for each of the findings. Thermomechanical buckling occurs predominantly in two ways depending on the length of the nanotube—while the shorter nanotubes fail by radial instability (shell-like behavior), the longer ones invariably fail due to bending-buckling (rod-like behavior). read less NOT USED (low confidence) M. Shaughnessy and R. E. Jones, “Efficient Use of an Adapting Database of Ab Initio Calculations To Generate Accurate Newtonian Dynamics.,” Journal of chemical theory and computation. 2016. link Times cited: 3 Abstract: We develop and demonstrate a method to efficiently use densi… read moreAbstract: We develop and demonstrate a method to efficiently use density functional calculations to drive classical dynamics of complex atomic and molecular systems. The method has the potential to scale to systems and time scales unreachable with current ab initio molecular dynamics schemes. It relies on an adapting dataset of independently computed Hellmann-Feynman forces for atomic configurations endowed with a distance metric. The metric on configurations enables fast database lookup and robust interpolation of the stored forces. We discuss mechanisms for the database to adapt to the needs of the evolving dynamics, while maintaining accuracy, and other extensions of the basic algorithm. read less NOT USED (low confidence) R. Kumar and A. Parashar, “Atomistic modeling of BN nanofillers for mechanical and thermal properties: a review.,” Nanoscale. 2016. link Times cited: 69 Abstract: Due to their exceptional mechanical properties, thermal cond… read moreAbstract: Due to their exceptional mechanical properties, thermal conductivity and a wide band gap (5-6 eV), boron nitride nanotubes and nanosheets have promising applications in the field of engineering and biomedical science. Accurate modeling of failure or fracture in a nanomaterial inherently involves coupling of atomic domains of cracks and voids as well as a deformation mechanism originating from grain boundaries. This review highlights the recent progress made in the atomistic modeling of boron nitride nanofillers. Continuous improvements in computational power have made it possible to study the structural properties of these nanofillers at the atomistic scale. read less NOT USED (low confidence) C.-ying Wang et al., “Effects of defect on the storage and diffusion of Na and Mg interstitials in Si anode,” Journal of Alloys and Compounds. 2016. link Times cited: 10 NOT USED (low confidence) X. Jian, Y. H. Zhang, and L. Shi, “Effect of thickness of diamond coatings on the adhesive strength of film–substrate interface,” Materials Research Innovations. 2015. link Times cited: 0 Abstract: Models of the interface between the diamond film with the th… read moreAbstract: Models of the interface between the diamond film with the thickness from 10 to 60 Å and the cemented carbide substrate are built using the molecular dynamics method, and the interactions of the atoms in the models are represented by coupling Morse potential, Tersoff potential and Lennard-Jones potential. The mechanical properties of the models are studied in the form of simulation with the molecular dynamics software Lammps. The simulation results indicate that the adhesive strength of the model with the thickness of the diamond film 20 Å reaches the maximum value of 25.80 GPa, and the adhesive strength declines and keeps stable with the value of 7.0 GPa when the range of the thickness of the diamond film is from 30 to 60 Å. read less NOT USED (low confidence) J. L. Gomez-Ballesteros, J. Burgos, P. Lin, R. Sharma, and P. Balbuena, “Nanocatalyst shape and composition during nucleation of single-walled carbon nanotubes.,” RSC advances. 2015. link Times cited: 15 Abstract: The dynamic evolution of nanocatalyst particle shape and car… read moreAbstract: The dynamic evolution of nanocatalyst particle shape and carbon composition during the initial stages of single-walled carbon nanotube growth by chemical vapor deposition synthesis is investigated. Classical reactive and ab initio molecular dynamics simulations are used, along with environmental transmission electron microscope video imaging analyses. A clear migration of carbon is detected from the nanocatalyst/substrate interface, leading to a carbon gradient showing enrichment of the nanocatalyst layers in the immediate vicinity of the contact layer. However, as the metal nanocatalyst particle becomes saturated with carbon, a dynamic equilibrium is established, with carbon precipitating on the surface and nucleating a carbon cap that is the precursor of nanotube growth. A carbon composition profile decreasing towards the nanoparticle top is clearly revealed by the computational and experimental results that show a negligible amount of carbon in the nanoparticle region in contact with the nucleating cap. The carbon composition profile inside the nanoparticle is accompanied by a well-defined shape evolution of the nanocatalyst driven by the various opposing forces acting upon it both from the substrate and from the nascent carbon nanostructure. This new understanding suggests that tuning the nanoparticle/substrate interaction would provide unique ways of controlling the nanotube synthesis. read less NOT USED (low confidence) L. Madeira and S. Vitiello, “Properties of heavy rare-gases adlayers on graphene substrates,” Surface Science. 2015. link Times cited: 6 NOT USED (low confidence) S. Hyun, Y. Park, and H.-tae Kim, “Computational characterizations on the grain-size-dependent properties of polycrystalline nanomaterials,” Journal of the Korean Physical Society. 2015. link Times cited: 6 Abstract: The microstructures of real nanomaterials can be quite compl… read moreAbstract: The microstructures of real nanomaterials can be quite complex with variety of grain sizes aligned in different crystal orientations and structural defects possibly created in a fabrication process. Material properties of these polycrystalline materials are generally known strongly dependent on the nanoscale morphology. First principle calculations based on the density functional theory need to be employed in these atomic characterizations; however, it may not be suitable for the polycrystalline nanomaterials for which large number of atoms is required in the simulation model. Instead, a mesoscale computer simulation scheme is employed to investigate these morphology-dependent mechanical properties of polycrystalline materials. We demonstrated the Voronoi construction of various polycrystalline atomic models such as two-dimensional graphene and three-dimensional silicon carbide. General behavior of the mechanical characteristics of the bulk nanostructured silicon carbide (SiC) was addressed, particularly the contribution of grain sizes. From this study, the optimal grain size was determined near 10 nm under tensile and compressive deformations. read less NOT USED (low confidence) Y. Li and W. Xiao, “First principles study of the C/Si ratio effect on the ideal tensile strength of β-SiC,” Computational Materials Science. 2015. link Times cited: 11 NOT USED (low confidence) H. Wilson, “Efficient ab initio free energy calculations by classically assisted trajectory sampling,” Comput. Phys. Commun. 2015. link Times cited: 1 NOT USED (low confidence) M. Ganchenkova et al., “Influence of the ab-initio calculation parameters on prediction of energy of point defects in silicon,” Modern Electronic Materials. 2015. link Times cited: 7 NOT USED (low confidence) K. Yuan, M. Sun, Z.-liang Wang, and D. Tang, “Tunable thermal rectification in silicon-functionalized graphene nanoribbons by molecular dynamics simulation,” International Journal of Thermal Sciences. 2015. link Times cited: 25 NOT USED (low confidence) X. Mu, L. Wang, X. Yang, P. Zhang, A. To, and T. Luo, “Ultra-low Thermal Conductivity in Si/Ge Hierarchical Superlattice Nanowire,” Scientific Reports. 2015. link Times cited: 54 NOT USED (low confidence) F. Feng and I. Akkutlu, “Flow of Hydrocarbons in Nanocapillary: A Non-Equilibrium Molecular Dynamics Study.” 2015. link Times cited: 23 NOT USED (low confidence) M. Stockett et al., “Threshold energies for single-carbon knockout from polycyclic aromatic hydrocarbons.,” The journal of physical chemistry letters. 2015. link Times cited: 24 Abstract: We have measured absolute cross sections for ultrafast (femt… read moreAbstract: We have measured absolute cross sections for ultrafast (femtosecond) single-carbon knockout from polycyclic aromatic hydrocarbon (PAH) cations as functions of He–PAH center-of-mass collision energy in the 10–200 eV range. Classical molecular dynamics (MD) simulations cover this range and extend up to 105 eV. The shapes of the knockout cross sections are well-described by a simple analytical expression yielding experimental and MD threshold energies of EthExp = 32.5 ± 0.4 eV and EthMD = 41.0 ± 0.3 eV, respectively. These are the first measurements of knockout threshold energies for molecules isolated in vacuo. We further deduce semiempirical (SE) and MD displacement energies, i.e., the energy transfers to the PAH molecules at the threshold energies for knockout, of TdispSE = 23.3 ± 0.3 eV and TdispMD = 27.0 ± 0.3 eV. The semiempirical results compare favorably with measured displacement energies for graphene (Tdisp = 23.6 eV). read less NOT USED (low confidence) Q. W. Zhang and B. Li, “Torsional behavior of single-walled carbon nanotubes,” Carbon. 2015. link Times cited: 10 NOT USED (low confidence) E. Lotfi, M. Neek‐Amal, and M. Elahi, “Molecular dynamics simulation of temperature profile in partially hydrogenated graphene and graphene with grain boundary.,” Journal of molecular graphics & modelling. 2015. link Times cited: 4 NOT USED (low confidence) M. M. Gianetti, A. Haji-Akbari, P. Longinotti, and P. Debenedetti, “Computational investigation of structure, dynamics and nucleation kinetics of a family of modified Stillinger-Weber model fluids in bulk and free-standing thin films.,” Physical chemistry chemical physics : PCCP. 2015. link Times cited: 24 Abstract: In recent years, computer simulations have found increasingl… read moreAbstract: In recent years, computer simulations have found increasingly widespread use as powerful tools for studying phase transitions in wide variety of systems. In the particular and very important case of aqueous systems, the commonly used force-fields tend to offer quite different predictions with respect to a wide range of thermodynamic and kinetic properties, including the ease of ice nucleation, the propensity to freeze at a vapor-liquid interface, and the existence of a liquid-liquid phase transition. It is thus of fundamental and practical interest to understand how different features of a given water model affect its thermodynamic and kinetic properties. In this work, we use the forward-flux sampling technique to study the crystallization kinetics of a family of modified Stillinger-Weber (SW) potentials with energy (ε) and length (σ) scales taken from the monoatomic water (mW) model, but with different tetrahedrality parameters (λ). By increasing λ from 21 to 24, we observe the nucleation rate increases by 48 orders of magnitude at a supercooling of ζ = T/Tm = 0.845. Using classical nucleation theory, we are able to demonstrate that this change can largely be accounted for by the increase in |Δμ|, the thermodynamic driving force. We also perform rate calculations in freestanding thin films of the supercooled liquid, and observe a crossover from surface-enhanced crystallization at λ = 21 to bulk-dominated crystallization for λ ≥ 22. read less NOT USED (low confidence) E. Hahn and M. Meyers, “Grain-size dependent mechanical behavior of nanocrystalline metals,” Materials Science and Engineering A-structural Materials Properties Microstructure and Processing. 2015. link Times cited: 162 NOT USED (low confidence) G. Qu, “MD Simulations of Nanomachining Monocrystalline Silicon,” Key Engineering Materials. 2015. link Times cited: 0 Abstract: Molecular dynamics (MD) simulations of nanomachining of mono… read moreAbstract: Molecular dynamics (MD) simulations of nanomachining of monocrystalline silicon were performed with the aid of Tersoff potential. The effects of machining conditions on the nature of heat distribution and corresponding phase transformation during nanomachining were investigated. It is clearly demonstrated that heat distribution shows a roughly concentric shape around the shear zone. A steep temperature gradient is observed in diamond tool and the highest temperature lies in chip. Stress distribution presents dual annular shapes, the highest compressive stress and tensile stress lay in shear zone and machined surface, respectively. Phase transformation mainly occurred in chips, shear zone and machined surface. Additionally, atoms in the machined surface are transformed from diamond cubic structure (Si-I) to β-tin structure (Si-II) and bct5-Si. read less NOT USED (low confidence) G. Qu, “MD Simulation and Optimization Analysis for Nanoscale Material Removal Process,” Key Engineering Materials. 2015. link Times cited: 0 Abstract: To understand the thermal effects on material removal at ato… read moreAbstract: To understand the thermal effects on material removal at atomic level, molecular dynamics (MD) simulation and optimization method are performed with the aid of Morse, EAM and Tersoff potential. The heat distribution is showed in 3D images under various parameters. The simulation results reveal that the heat distribution is roughly concentric around the tool edge and a steep temperature gradient is observed between diamond tool and chip. During material removal process, there is a narrow region with high temperature in shear zone where most of heat generated due to plastic deformation of workpiece material, the high temperature extends from here to chip, diamond tool and workpiece, but the highest temperature lies in chip. Compared with low speed, a higher temperature region below the tool edge implied a larger shear stress is built up in a local region and a rougher machined surface is generated at high cutting speed. read less NOT USED (low confidence) S. Inukai et al., “High-performance multi-functional reverse osmosis membranes obtained by carbon nanotube·polyamide nanocomposite,” Scientific Reports. 2015. link Times cited: 90 NOT USED (low confidence) Y. Chen, Z. Deng, and Q. Cheng, “Thermal conductivity of Si/Ge nanocomposites with fractal tree-shaped networks by considering the phonon interface scattering,” International Journal of Heat and Mass Transfer. 2015. link Times cited: 7 NOT USED (low confidence) M. Dilamian and A. Haghi, “Update on Aerogels Material and Technology.” 2015. link Times cited: 0 NOT USED (low confidence) S. N. Korobeynikov, V. Alyokhin, B. Annin, and A. V. Babichev, “Quasi-static buckling simulation of single-layer graphene sheets by the molecular mechanics method,” Mathematics and Mechanics of Solids. 2015. link Times cited: 21 Abstract: This paper presents a quasi-static nonlinear buckling analys… read moreAbstract: This paper presents a quasi-static nonlinear buckling analysis of compressed single-layer graphene sheets (SLGSs) using the molecular mechanics method. Bonded interactions between carbon atoms are simulated using a modified parameter set of the DREIDING force field that leads to better agreement between simulated mechanical properties of graphene and reference literature data than the standard parameter set of this force field (see Mayo et al., J Phys Chem 1990; 94: 8897–8909). Identification of constraints of atoms of the SLGS edges with the boundary conditions of clamped and simply supported thin plates is made. The buckling loads and modes obtained by linear and nonlinear buckling analysis of a compressed quadratic SLGS with a side length of 6 nm are shown to be close to each other. In addition, it has been found by nonlinear buckling analysis that only equilibrium configurations with modes of initial post-buckling deformed configurations correlated with the one-half-wave column-like buckling mode have stable equilibrium configurations for clamped and simply supported SLGSs. As the edges of a simply supported SLGS approach each other, the geometry of this mode of post-buckling deformation with inclusion of the non-bonded van der Waals (vdW) interactions between carbon atoms becomes closer to the geometry of a single-walled carbon nanotube, and without inclusion of the vdW interactions, this mode has the geometry of a cylinder with a drop-shaped cross-section. read less NOT USED (low confidence) S. Sarikurt, C. Sevik, A. Kinaci, J. Haskins, and T. Çagin, “Tailoring Thermal Conductivity of Ge/Si Core‐Shell Nanowires.” 2015. link Times cited: 1 NOT USED (low confidence) J.-M. Lu, T.-Y. Wu, J. Hsieh, and S. Ju, “The investigation of Si and Zr diffusion behaviors during the reactive diffusion—a molecular dynamics study.” 2015. link Times cited: 0 NOT USED (low confidence) Y. Xiao, F. Fang, Z. Xu, and X. T. Hu, “Annealing recovery of nanoscale silicon surface damage caused by Ga focused ion beam,” Applied Surface Science. 2015. link Times cited: 39 NOT USED (low confidence) M. Dilamian, “Understanding Modeling and Simulation of Aerogels Behavior: From Theory to Application.” 2015. link Times cited: 0 NOT USED (low confidence) E. Jin, S. Du, and H. He, “The evolution of mechanical and structural properties at the fiber/matrix interphase of SiC/SiC composites,” Computational Materials Science. 2015. link Times cited: 9 NOT USED (low confidence) F. Tavazza, T. Senftle, C. Zou, C. Becker, and A. Duin, “Molecular Dynamics Investigation of the Effects of Tip–Substrate Interactions during Nanoindentation,” Journal of Physical Chemistry C. 2015. link Times cited: 52 Abstract: Nanoindentation in molecular dynamics (MD) simulations typic… read moreAbstract: Nanoindentation in molecular dynamics (MD) simulations typically uses highly idealized indenter tip models. Such tips usually consist of either a single sphere or a collection of atoms, both of which are purely repulsive in their interactions with the substrate. It is also assumed that there is no environmental or substrate contamination, nor is there a surface oxide layer. In this work we examine the effects of these assumptions by comparing detailed MD simulations utilizing varying interaction potentials against both experimental atomic force microscopy observations and calculations using density functional theory. Specifically, we examine the effect of a tip–substrate interaction on the indenter under clean, hydrogenated, and oxidized conditions. We find that under clean or oxidized conditions (where we include oxygen on the nickel surface to mimic a passivating NiO layer) there is a substantial material transfer from the substrate to the tip. This material (Ni atoms) remains adsorbed on the tip upon r... read less NOT USED (low confidence) M. Yu and S. Kenny, “The energetic impact of small CdxTey clusters on Cadmium Telluride,” Thin Solid Films. 2015. link Times cited: 4 NOT USED (low confidence) A. Minkin, A. Knizhnik, and B. Potapkin, “OpenCL realization of some many-body potentials.” 2015. link Times cited: 1 Abstract: Modeling of carbon nanostructures by means of classical mole… read moreAbstract: Modeling of carbon nanostructures by means of classical molecular dynamics requires a lot of computations. One of the ways to improve the performance of basic algorithms is to transform them for running on SIMD-type computing systems such as systems with dedicated GPU. In this work we describe the development of algorithms for computation of many-body interaction based on Tersoff and embedded-atom potentials by means of OpenCL technology. OpenCL standard provides universality and portability of the algorithms and can be successfully used for development of the software for heterogeneous computing systems. The performance of algorithms is evaluated on CPU and GPU hardware platforms. It is shown that concurrent memory writes is effective for Tersoff bond order potential. The same approach for embedded-atom potential is shown to be slower than algorithm without concurrent memory access. Performance evaluation shows a significant GPU acceleration of energy-force evaluation algorithms for many-body potentials in comparison to the corresponding serial implementations. read less NOT USED (low confidence) C. Shao and H. Bao, “A molecular dynamics investigation of heat transfer across a disordered thin film,” International Journal of Heat and Mass Transfer. 2015. link Times cited: 27 NOT USED (low confidence) P. Gautreau, Y. Chu, T. Ragab, and C. Basaran, “Phonon–phonon scattering rates in single walled carbon nanotubes,” Computational Materials Science. 2015. link Times cited: 9 NOT USED (low confidence) J. Zhang and S. Meguid, “Composition-dependent buckling behaviour of hybrid boron nitride-carbon nanotubes.,” Physical chemistry chemical physics : PCCP. 2015. link Times cited: 19 Abstract: The buckling of hybrid boron nitride-carbon nanotubes (BN-CN… read moreAbstract: The buckling of hybrid boron nitride-carbon nanotubes (BN-CNTs) with various BN compositions and locations of the BN domain is investigated using molecular dynamics. We find that BN-CNTs with large BN composition (>38%) only undergo local shell-like buckling in their BN domain. Although similar local shell-like buckling can occur in BN-CNTs with a relatively small BN composition, it can transfer to the global column-like buckling of the whole BN-CNT with increasing strains. The critical strains for local shell-like and global column-like buckling decrease with increasing BN composition. In addition, critical strains and buckling modes of the global column-like buckling of BN-CNTs also strongly depend on the location of their BN domain. As a possible application of the buckling of BN-CNTs, we demonstrate that the BN-CNT can serve as a water channel integrated with a local natural valve using the local buckling of its BN domain. read less NOT USED (low confidence) W.-T. Xu, G. Zhang, and B. Li, “Effects of lithium insertion on thermal conductivity of silicon nanowires,” Applied Physics Letters. 2015. link Times cited: 14 Abstract: Recently, silicon nanowires (SiNWs) have been applied as hig… read moreAbstract: Recently, silicon nanowires (SiNWs) have been applied as high-performance Li battery anodes, since they can overcome the pulverization and mechanical fracture during lithiation. Although thermal stability is one of the most important parameters that determine safety of Li batteries, thermal conductivity of SiNWs with Li insertion remains unclear. In this letter, using molecular dynamics simulations, we study room temperature thermal conductivity of SiNWs with Li insertion. It is found that compared with the pristine SiNW, there is as much as 60% reduction in thermal conductivity with 10% concentration of inserted Li atoms, while under the same impurity concentration the reduction in thermal conductivity of the mass-disordered SiNW is only 30%. With lattice dynamics calculations and normal mode decomposition, it is revealed that the phonon lifetimes in SiNWs decrease greatly due to strong scattering of phonons by vibrational modes of Li atoms, especially for those high frequency phonons. The observed stron... read less NOT USED (low confidence) J.-W. Jiang, “Parametrization of Stillinger–Weber potential based on valence force field model: application to single-layer MoS2 and black phosphorus,” Nanotechnology. 2015. link Times cited: 223 Abstract: We propose parametrizing the Stillinger–Weber potential for … read moreAbstract: We propose parametrizing the Stillinger–Weber potential for covalent materials starting from the valence force-field model. All geometrical parameters in the Stillinger–Weber potential are determined analytically according to the equilibrium condition for each individual potential term, while the energy parameters are derived from the valence force-field model. This parametrization approach transfers the accuracy of the valence force field model to the Stillinger–Weber potential. Furthermore, the resulting Stilliinger–Weber potential supports stable molecular dynamics simulations, as each potential term is at an energy-minimum state separately at the equilibrium configuration. We employ this procedure to parametrize Stillinger–Weber potentials for single-layer MoS2 and black phosphorous. The obtained Stillinger–Weber potentials predict an accurate phonon spectrum and mechanical behaviors. We also provide input scripts of these Stillinger–Weber potentials used by publicly available simulation packages including GULP and LAMMPS. read less NOT USED (low confidence) A. Akimov and O. Prezhdo, “Large-Scale Computations in Chemistry: A Bird’s Eye View of a Vibrant Field.,” Chemical reviews. 2015. link Times cited: 171 NOT USED (low confidence) L.-feng Xu, X. Wang, L. Qingmin, H. Xuwei, H. Shuai, and W. Gaoyong, “A ReaxFF-based molecular dynamics study of the pyrolysis mechanism of polyimide,” Polymer Degradation and Stability. 2015. link Times cited: 83 NOT USED (low confidence) J. Buchwald and S. G. Mayr, “Influence of surface stresses on indentation response,” Nanotechnology. 2015. link Times cited: 5 Abstract: Surface stresses lead to an effective change in the elastic … read moreAbstract: Surface stresses lead to an effective change in the elastic constants of thin films and at surfaces. The development of modern scanning probe techniques like contact resonance atomic force microscopy empowers the experimenter to measure at scales where these effects become increasingly relevant. In this paper we employ a computational multiscale approach where we compare density functional theory (DFT) and molecular dynamics simulations as tools to calculate the thin-film/surface elastic behavior for silicon and strontiumtitanate. From the surface elastic constants gained by DFT calculations we develop a continuum finite-element multilayer model to study the impact of surface stresses on indentation experiments. In general the stress field of an indenter and thus the impact of surface stresses on the indentation modulus depends on its contact radius and on its particular shape. We propose an analytical model that describes the behavior of the indentation modulus as a function of the contact radius. We show that this model fits well to simulation results gained for a spherical and a flat punch indenter. Our results demonstrate a surface-stress-induced reduction of the indentation modulus of about 5% for strontiumtitanate and 6% for silicon for a contact radius of r c = 5 nm ?> , irrespective of the indenter shape. read less NOT USED (low confidence) X. Zhang, H. Bao, and M. Hu, “Bilateral substrate effect on the thermal conductivity of two-dimensional silicon.,” Nanoscale. 2015. link Times cited: 66 Abstract: Silicene, the silicon-based counterpart of graphene, has rec… read moreAbstract: Silicene, the silicon-based counterpart of graphene, has received exceptional attention from a wide community of scientists and engineers in addition to graphene, due to its unique and fascinating physical and chemical properties. Recently, the thermal transport of the atomic thin Si layer, critical to various applications in nanoelectronics, has been studied; however, to date, the substrate effect has not been investigated. In this paper, we present our nonequilibrium molecular dynamics studies on the phonon transport of silicene supported on different substrates. A counter-intuitive phenomenon, in which the thermal conductivity of silicene can be either enhanced or suppressed by changing the surface crystal plane of the substrate, has been observed. This phenomenon is fundamentally different from the general understanding of supported graphene, a representative two-dimensional material, in which the substrate always has a negative effect on the phonon transport of graphene. By performing phonon polarization and spectral energy density analysis, we explain the underlying physics of the new phenomenon in terms of the different impacts on the dominant phonons in the thermal transport of silicene induced by the substrate: the dramatic increase in the thermal conductivity of silicene supported on the 6H-SiC substrate is due to the augmented lifetime of the majority of the acoustic phonons, while the significant decrease in the thermal conductivity of silicene supported on the 3C-SiC substrate results from the reduction in the lifetime of almost the entire phonon spectrum. Our results suggest that, by choosing different substrates, the thermal conductivity of silicene can be largely tuned, which paves the way for manipulating the thermal transport properties of silicene for future emerging applications. read less NOT USED (low confidence) Z. Hui, P. He, Y. Dai, and A. Wu, “The optimal initial configuration of silicon-functionalized graphene for lithium-ion battery anode,” Proceedings of the Institution of Mechanical Engineers, Part N: Journal of Nanoengineering and Nanosystems. 2015. link Times cited: 0 Abstract: Silicon-functionalized graphene in its initial configuration… read moreAbstract: Silicon-functionalized graphene in its initial configuration, as anode materials for lithium-ion battery, will directly affect the battery’s reversible capacity, charge and discharge rate and service life. To present its optimal initial configuration, the relaxation and stretching properties of silicon-functionalized graphene were studied using molecular dynamics simulation with the Tersoff potential, the Lennard–Jones potential and the velocity Verlet time-stepping algorithm. In this study, many models of silicon-functionalized graphene with different arrangement of silicon atoms, different Si/C ratios, different vacancy defect ratios, different tension rates and different temperatures were primarily developed respectively to simulate the influence of different configurations on the volume, potential energy, elastic modulus, tensile strain, strength and other properties of the model, and we found that (1) the model with random arrangement of silicon atoms possessed biggest system potential energy, biggest volume and highest mechanics property among all models. (2) With the increasing amount of silicon atoms, the wavy corrugations and the peak became clearer, the potential energy decreased and volume increased. The model with Si/C ratio of 3.28% possessed highest mechanics property. (3) With the increasing vacancy, the system’s potential energy increased and volume decreased. The model with a vacancy defect ratio of 1% possessed highest mechanics property parameters. (4) Mechanics properties were the highest at the temperature of 300 K. read less NOT USED (low confidence) P. Süle and M. Szendrő, “Time-lapsed graphene moiré superlattices on Cu(1 1 1),” Modelling and Simulation in Materials Science and Engineering. 2015. link Times cited: 7 Abstract: We report classical molecular dynamics simulations (CMD) of … read moreAbstract: We report classical molecular dynamics simulations (CMD) of the moiré superlattice of graphene on Cu(1 1 1) using a new parameterized Abell–Tersoff potential for the graphene/Cu(1 1 1) interface fitted in this paper to nonlocal van der Waals density functional theory calculations. The interfacial force field with time-lapsed CMD provides superlattices in good quantitative agreement with the available experimental results. The long range coincidence supercells with nonequivalent moiré hills have also been identified and analyzed. Spot profile analysis reveals that the moiré spots are inequivalent over large areas, and their heights are randomly distributed. This result is in accordance with recent atomic force microscopy studies. Our simulations also shed light on the transient dynamics of the moiré superlattice in atomic detail. The moiré superlattice exhibits a pattern which is dynamical rather than statically pinned to the support, and can be observed mostly via time-lapsing. The instantaneous snapshots of the periodic moiré pattern at low temperature are already weakly disordered, lacking the apparent sharpness of the time-averaged pattern and of the scanning tunneling microscopy images. This suggests the existence of competition of orders—between a static (first-order) moiré superstructure and a dynamical (second-order) moiré superstructure. read less NOT USED (low confidence) W. Lee, X. Yao, W. Jian, and Q. Han, “High-velocity shock compression of SiC via molecular dynamics simulation,” Computational Materials Science. 2015. link Times cited: 25 NOT USED (low confidence) Y. Feng, J. Zhu, and D. Tang, “Molecular dynamics study on heat transport from single-walled carbon nanotubes to Si substrate,” Physics Letters A. 2015. link Times cited: 14 NOT USED (low confidence) Z. Zhao et al., “Nanoarchitectured materials composed of fullerene-like spheroids and disordered graphene layers with tunable mechanical properties,” Nature Communications. 2015. link Times cited: 54 NOT USED (low confidence) J. Chen, G. Zhang, and B. Li, “Molecular Dynamics Simulations for Computing Thermal Conductivity of Nanomaterials: Molecular Dynamics Simulations for Computing Thermal Conductivity of Nanomaterials.” 2015. link Times cited: 2 NOT USED (low confidence) X. Guo, C. Zhai, Z. Liu, L. Zhang, Z. Jin, and D. Guo, “Effect of stacking fault in silicon induced by nanoindentation with MD simulation,” Materials Science in Semiconductor Processing. 2015. link Times cited: 8 NOT USED (low confidence) K. Gordiz, D. J. Singh, and A. Henry, “Ensemble averaging vs. time averaging in molecular dynamics simulations of thermal conductivity,” Journal of Applied Physics. 2015. link Times cited: 19 Abstract: In this report, we compare time averaging and ensemble avera… read moreAbstract: In this report, we compare time averaging and ensemble averaging as two different methods for phase space sampling in molecular dynamics (MD) calculations of thermal conductivity. For the comparison, we calculate thermal conductivities of solid argon and silicon structures, using equilibrium MD. We introduce two different schemes for the ensemble averaging approach and show that both can reduce the total simulation time as compared to time averaging. It is also found that velocity rescaling is an efficient mechanism for phase space exploration. Although our methodology is tested using classical MD, the approaches used for generating independent trajectories may find their greatest utility in computationally expensive simulations such as first principles MD. For such simulations, where each time step is costly, time averaging can require long simulation times because each time step must be evaluated sequentially and therefore phase space averaging is achieved through sequential operations. On the other han... read less NOT USED (low confidence) Y. Feng, J. Zhu, and D. Tang, “Effect of van der Waals forces on thermal conductance at the interface of a single-wall carbon nanotube array and silicon,” AIP Advances. 2014. link Times cited: 14 Abstract: Molecular dynamics simulations are performed to evaluate the… read moreAbstract: Molecular dynamics simulations are performed to evaluate the effect of van der Waals forces among single-wall carbon nanotubes (SWNTs) on the interfacial thermal conductance between a SWNT array and silicon substrate. First, samples of SWNTs vertically aligned on silicon substrate are simulated, where both the number and arrangement of SWNTs are varied. Results reveal that the interfacial thermal conductance of a SWNT array/Si with van der Waals forces present is higher than when they are absent. To better understand how van der Waals forces affect heat transfer through the interface between SWNTs and silicon, further constructs of one SWNT surrounded by different numbers of other ones are studied, and the results show that the interfacial thermal conductance of the central SWNT increases with increasing van der Waals forces. Through analysis of the covalent bonds and vibrational density of states at the interface, we find that heat transfer across the interface is enhanced with a greater number of chemical bonds and that improved vibrational coupling of the two sides of the interface results in higher interfacial thermal conductance. Van der Waals forces stimulate heat transfer at the interface. read less NOT USED (low confidence) S. Okamoto and A. Ito, “Molecular Dynamics Analysis on Compressive Strength of PAN-Based Carbon Fibers,” International Journal of Nanoscience. 2014. link Times cited: 1 Abstract: We investigated the compressive strength of PAN-based carbon… read moreAbstract: We investigated the compressive strength of PAN-based carbon fibers containing both amorphous and crystalline structures using molecular dynamics simulations. In addition, we investigated the buckling behavior of graphene and graphite crystals under compressive loading. The calculated buckling stresses of those crystals with different aspect ratios agree well with the results by the Euler's buckling theory. We finally found that the compressive strength of the PAN-based carbon fiber with a large amount of amorphous structures was 11 GPa. Moreover, a fracture of the PAN-based carbon fiber begins due to the buckling of carbon layers in crystallites, and propagates with the shear slipping in the crystallites. On the other hand, the compressive strength of the carbon fiber with a small amount of amorphous structures was only 2 GPa. Thus, it was found that the amorphous structure significantly affects the compressive strength of PAN-based carbon fibers. read less NOT USED (low confidence) W. Jiang, Q.-W. Fu, C. Peng, Z. Chang, and H. Zhao, “Fracture Behavior of Carbon Nanotubes Containing Crack: Theoretical and Molecular Dynamics Analysis,” Journal of Mechatronics. 2014. link Times cited: 0 Abstract: A theoretical model for predicting fracture behavior of carb… read moreAbstract: A theoretical model for predicting fracture behavior of carbon nanotubes (CNTs) with the effects of temperature and strain rate is presented based on kinetic analysis of fracture. The influences of assuming defects including a single crack, horizontal and vertical parallel double cracks in the CNTs are also discussed using quantized fracture mechanics (QFM) theory and molecular dynamics method (MD). Our analysis shows that the MD simulated strengths clearly follow the 1+ n −1/2 dependence predicted by QFM at a broad temperature range from 300 K to 4000 K. Compared with the MD results, the proposed theoretical model can give a reasonable prediction for the fracture behavior of the carbon nanotubes with a single crack, horizontal and vertical parallel double cracks. read less NOT USED (low confidence) X. Hu, S. Sundararajan, and A. Martini, “The effects of adhesive strength and load on material transfer in nanoscale wear,” Computational Materials Science. 2014. link Times cited: 19 NOT USED (low confidence) V. Sorkin and Y.-W. Zhang, “Wetting and spreading of long-chain ZDOL polymer nanodroplet on graphene-coated amorphous carbon,” Surface Science. 2014. link Times cited: 2 NOT USED (low confidence) J. Shi, G. Yang, X. L. Li, and X. Huang, “Interfacial Thermal Resistance and Thermal Rectification in Graphene with Geometric Variations of Doped Nitrogen: A Molecular Dynamics Study,” Advanced Materials Research. 2014. link Times cited: 3 Abstract: Using classical non-equilibrium molecular dynamics simulatio… read moreAbstract: Using classical non-equilibrium molecular dynamics simulations (NEMD), the interfacial thermal resistance and thermal rectification of nitrogen-doped zigzag graphene (NDZG) are investigated. Two different structural models about nitrogen-doped graphene are constructed. It is found that the interfacial thermal resistance at the location of nitrogen-doping causes severe reduction in thermal conductivity of the NDZG. Thermal rectification of the triangular single-nitrogen-doped graphene (SNDG) decreases with increasing temperature. However, thermal rectification is not detected in the parallel various–nitrogen-doped graphene (VNDG). These results suggest that SNDG might be a promising structure for thermal device. read less NOT USED (low confidence) V. Yamakov, C. Park, J. Kang, K. Wise, and C. Fay, “Piezoelectric molecular dynamics model for boron nitride nanotubes,” Computational Materials Science. 2014. link Times cited: 23 NOT USED (low confidence) Y. Rosandi and H. Urbassek, “Subsurface and interface channeling of keV ions in graphene/SiC,” Nuclear Instruments & Methods in Physics Research Section B-beam Interactions With Materials and Atoms. 2014. link Times cited: 1 NOT USED (low confidence) A. O. Monteiro, P. Costa, P. Cachim, and D. Holec, “Buckling of ZnS-filled single-walled carbon nanotubes – The influence of aspect ratio,” Carbon. 2014. link Times cited: 9 NOT USED (low confidence) N. Liao, W. Xue, H. Zhou, and M. Zhang, “Molecular dynamics investigation of structure and high-temperature mechanical properties of SiBCO ceramics,” Journal of Alloys and Compounds. 2014. link Times cited: 16 NOT USED (low confidence) D. Fantauzzi, J. Bandlow, L. Sabo, J. Mueller, A. V. van Duin, and T. Jacob, “Development of a ReaxFF potential for Pt-O systems describing the energetics and dynamics of Pt-oxide formation.,” Physical chemistry chemical physics : PCCP. 2014. link Times cited: 53 Abstract: ReaxFF force field parameters describing Pt-Pt and Pt-O inte… read moreAbstract: ReaxFF force field parameters describing Pt-Pt and Pt-O interactions have been developed and tested. The Pt-Pt parameters are shown to accurately account for the chemical nature, atomic structures and other materials properties of bulk platinum phases, low and high-index platinum surfaces and nanoclusters. The Pt-O parameters reliably describe bulk platinum oxides, as well as oxygen adsorption and oxide formation on Pt(111) terraces and the {111} and {100} steps connecting them. Good agreement between the force field and both density functional theory (DFT) calculations and experimental observations is demonstrated in the relative surface free energies of high symmetry Pt-O surface phases as a function of the oxygen chemical potential, making ReaxFF an ideal tool for more detailed investigations of more complex Pt-O surface structures. Validation for its application to studies of the kinetics and dynamics of surface oxide formation in the context of either molecular dynamics (MD) or Monte Carlo simulations are provided in part by a two-part investigation of oxygen diffusion on Pt(111), in which nudged elastic band (NEB) calculations and MD simulations are used to characterize diffusion processes and to determine the relevant diffusion coefficients and barriers. Finally, the power of the ReaxFF reactive force field approach in addressing surface structures well beyond the reach of routine DFT calculations is exhibited in a brief proof-of-concept study of oxygen adsorbate displacement within ordered overlayers. read less NOT USED (low confidence) X. Guo, C. Zhai, Z. Liu, L. Zhang, Z.-J. Jin, and R. Kang, “Research on Elastic-Plastic Transition and Hardening Effect for Monocrystalline Silicon Surfaces,” Advanced Materials Research. 2014. link Times cited: 0 Abstract: Based on molecular dynamics method, a nanoindentation simula… read moreAbstract: Based on molecular dynamics method, a nanoindentation simulation of the silicon crystal is built and the load-displacement curve is drawn. According to the load-displacement curve, the elastic-plastic transition of silicon crystal is analyzed. The results show that the critical point in the elastic-plastic transition is between 15 and 20 angstroms. In addition, different crystal planes of silicon crystal are loaded for five cycles respectively; the nanohardness is calculated and the nanohardness curve is obtained. The results show that after the first plastic deformation of the silicon crystal surface is occurred, the surface will have a higher hardness and a higher elasticity. Therefore, in the ultra precision machining, in order to reduce the occurrence of damage, the depth of the processing should be controlled in the range of elasticity. Moreover, the method of small quantities in high frequency can increase mechanical properties on the surface. read less NOT USED (low confidence) J. Kang and K. Lee, “Molecular dynamics study of carbon-nanotube shuttle-memory on graphene nanoribbon array,” Computational Materials Science. 2014. link Times cited: 5 NOT USED (low confidence) K. Leung, Z. Pan, and D. Warner, “Atomistic-based predictions of crack tip behavior in silicon carbide across a range of temperatures and strain rates,” Acta Materialia. 2014. link Times cited: 25 NOT USED (low confidence) J. Dai, C. Zhang, F. Mao, W. Cheng, and F.-S. Zhang, “Dynamical processes of low-energy carbon ion collision with the graphene supported by diamond,” European Physical Journal-applied Physics. 2014. link Times cited: 1 Abstract: The dynamical processes of a low-energy carbon ion collision… read moreAbstract: The dynamical processes of a low-energy carbon ion collision with the graphene sheet supported by diamond at three impact positions are studied by using empirical potential molecular dynamics simulations. The energy transformation and the structural evolution have been studied. Five types of processes are observed: adsorption, hybridization, defects formation in diamond, atom emission and transmission. We find that the irradiation damage is closely related to the incident energy and impact position. In our simulations, as the projectile collides at a graphene atom, it transfers most of its energy to the primary knock-on atom, and defects are created in graphene. When the projectile moves perpendicular towards the center of a C-C bond in the graphene sheet, the energy transferred from the projectile to the atoms associated with the bond increases firstly and then decreases with the increasing incident energy, and the graphene sheet remains two-dimensional crystal structure after collision when the incident energy is larger than 360 eV. While the impact location is the center of a hexagonal ring on the graphene sheet, the energy transferred from the projectile to the atoms of the target ring is very small regardless of how large is the incident energy, and the graphene sheet is able to keep perfect crystal structure when the incident energy is larger than 34 eV. read less NOT USED (low confidence) J. Kang and K. Lee, “Molecular dynamics study on the C60 oscillator in a graphene nanoribbon trench,” Journal of the Korean Physical Society. 2014. link Times cited: 5 Abstract: Here, we present a C60 oscillator encapsulated in a graphene… read moreAbstract: Here, we present a C60 oscillator encapsulated in a graphene nanoribbon (GNR) trench. The mechanisms of the C60/GNR-trench oscillators are the same as those of the multi-walled carbonnanotube (CNT) oscillators. While the array synthesis of these CNT oscillators is very difficult, the same GNR trench array can be implemented by using current nanofabrication processes. The oscillatory behaviors of a C60 oscillator sucked into a GNR trench were investigated in impulse dynamics via classical molecular dynamics simulations. The oscillatory motions of the C60 oscillator in the GNR trench can be controlled by using the length and the width of the trench as structural parameters because the restoring forces acting on the C60 oscillator are related to the width of the GNR trench and the length of the GNR trench is the direct distance of motion of the C60 oscillator during translation. C60/GNR-trench nanostructures have a wide range of applications in nanotechnology, such as shuttle memories and switches, sensors, and oscillators. read less NOT USED (low confidence) S. Ajori and R. Ansari, “Torsional buckling behavior of boron-nitride nanotubes using molecular dynamics simulations,” Current Applied Physics. 2014. link Times cited: 26 NOT USED (low confidence) R. Ansari and S. Ajori, “Molecular dynamics study of the torsional vibration characteristics of boron-nitride nanotubes,” Physics Letters A. 2014. link Times cited: 31 NOT USED (low confidence) C. Georgiou, T. Leontiou, and P. Kelires, “Shaping the composition profiles in heteroepitaxial quantum dots: Interplay of thermodynamic and kinetic effects,” AIP Advances. 2014. link Times cited: 7 Abstract: Atomistic Monte Carlo simulations, coupling thermodynamic an… read moreAbstract: Atomistic Monte Carlo simulations, coupling thermodynamic and kinetic effects, resolve a longstanding controversy regarding the origin of composition profiles in heteroepitaxial SiGe quantum dots. It is shown that profiles with cores rich in the unstrained (Si) component derive from near-equilibrium processes and intraisland diffusion. Profiles with cores rich in the strained (Ge) component are of nonequilibrium nature, i.e., they are strain driven but kinetically limited. They are shaped by the distribution of kinetic barriers of atomic diffusion in the islands. The diffusion pathways are clearly revealed for the first time. Geometrical kinetics play a minor role. read less NOT USED (low confidence) D. Schopf, H. Euchner, and H. Trebin, “Effective potentials for simulations of the thermal conductivity of type-I semiconductor clathrate systems,” Physical Review B. 2014. link Times cited: 13 NOT USED (low confidence) X. Wu and X. Li, “On consistent definitions of momentum and energy fluxes for molecular dynamics models with multi-body interatomic potentials,” Modelling and Simulation in Materials Science and Engineering. 2014. link Times cited: 7 Abstract: Results from molecular dynamics simulations often need to be… read moreAbstract: Results from molecular dynamics simulations often need to be further processed to understand the physics on a larger scale. This paper considers the definitions of momentum and energy fluxes obtained from a control-volume approach. To assess the validity of these defined quantities, two consistency criteria are proposed. As examples, the embedded atom potential and the Tersoff potential are considered. The consistency is verified using analytical and numerical methods. read less NOT USED (low confidence) M. Liao, “Thermal Stability of an Axial-Compressed Open-Tip Carbon Nanocone,” Applied Mechanics and Materials. 2014. link Times cited: 1 Abstract: This paper used molecular dynamics (MD) simulations to inves… read moreAbstract: This paper used molecular dynamics (MD) simulations to investigate thermal stability of an axial compressed open-tip carbon nanocone, which have an apex angle of 19.2°. To study the thermal stability, the carbon nanocone was first compressed axially up to the compression strain near its critical strain for buckling. Temperature of carbon nanocone was then increased gradually and the corresponding axial force in the carbon nanocone was monitored to examine the thermal stability of the carbon nanocone. It was found that the critical temperature for thermal instability grows with the decrease of the initial compressed strain. Comparing with the buckling mode of the carbon nanocone, the thermal instability mode displayed a swelling configuration rather than a deflective configuration of the buckling mode. The interesting finding would be helpful for applications of open-tip carbon nanocones. read less NOT USED (low confidence) H. Yang, Y. Tang, Y. Liu, X.-gang Yu, and P. Yang, “Thermal conductivity of graphene nanoribbons with defects and nitrogen doping,” Reactive & Functional Polymers. 2014. link Times cited: 30 NOT USED (low confidence) F. Mollaamin, M. Monajjemi, and J. Mehrzad, “Molecular Modeling Investigation of an Anti-cancer Agent Joint to SWCNT Using Theoretical Methods,” Fullerenes, Nanotubes and Carbon Nanostructures. 2014. link Times cited: 15 Abstract: The investigation of vinblastine intra single-walled carbon … read moreAbstract: The investigation of vinblastine intra single-walled carbon nanotube (SWCNT) has been studied by theoretical methods, and the best structural and functional vinblastine has been established. These results show the minimized structure of vinblastine intra SWCNT, calculated potential energy for important dihedral angles, and the effect of temperature on geometry of optimized structure. However, the vinblastine- SWCNT compound has been displayed different spectrum of gas phase and solvent NMR by GIAO and CSGT approximations, which appears the results of the determination of the number of active sites in vinblastine- SWCNT using the Onsager method that the O29 has the most shifting at indicated model, and it has been reflected mostly the transfer of vinblastine- SWCNT to a less polar environment. read less NOT USED (low confidence) M. Ren, J. Liu, L. Wang, and Q. Zheng, “Anomalous elastic buckling of hexagonal layered crystalline materials in the absence of structure slenderness,” arXiv: Materials Science. 2014. link Times cited: 23 NOT USED (low confidence) S. Heredia‐Avalos, J. Moreno-Marín, and C. Denton, “Simulated carbon irradiation of carbon nanotubes – A comparative study of interatomic potentials,” Nuclear Instruments & Methods in Physics Research Section B-beam Interactions With Materials and Atoms. 2014. link Times cited: 3 NOT USED (low confidence) A. Galashev, “Computer stability test for aluminum films heated on a graphene sheet,” Technical Physics. 2014. link Times cited: 20 NOT USED (low confidence) U. Ray and G. Balasubramanian, “Reduced thermal conductivity of isotope substituted carbon nanomaterials: Nanotube versus graphene nanoribbon,” Chemical Physics Letters. 2014. link Times cited: 19 NOT USED (low confidence) Y. Zhou, Z. Yang, T. Wang, D. Hu, and X. Ma, “The typical manners of dynamic crack propagation along the metal/ceramics interfaces: A molecular dynamics study,” Computational Materials Science. 2014. link Times cited: 28 NOT USED (low confidence) J. Wang, M. Xin, S. Cao, and T. Zhao, “Graphitization Wear of Diamond Tool in Nanometric Cutting of Single Crystal Silicon,” Key Engineering Materials. 2014. link Times cited: 1 Abstract: During ultra-precision cutting of brittle materials, the wea… read moreAbstract: During ultra-precision cutting of brittle materials, the wear of diamond tool seriously affects the quality of machined surface. By molecular dynamics modeling of nanometric cutting, the generation of graphitization and its formation process at the cutting edge of tool are observed. By analyzing the process, the reason of the graphitization wear is mainly thermo-chemical reactions. By calculating the changes of coordination numbers of the tool atoms, graphitization conversion rate keeps increasing along the cutting process but gets stable after a certain length, which indicates the graphitization wear will occur in the same process. read less NOT USED (low confidence) G. Barinovs, A. Sabanskis, and A. Muiznieks, “Study of silicon crystal surface formation based on molecular dynamics simulation results,” Journal of Crystal Growth. 2014. link Times cited: 6 NOT USED (low confidence) J. Kang, J. Park, and O. Kwon, “Developing a nanoelectromechanical shuttle graphene-nanoflake device,” Physica E-low-dimensional Systems & Nanostructures. 2014. link Times cited: 5 NOT USED (low confidence) A. Sgouros, M. Sigalas, K. Papagelis, G. Kalosakas, and G. Kalosakas, “Transforming graphene nanoribbons into nanotubes by use of point defects,” Journal of Physics: Condensed Matter. 2014. link Times cited: 11 Abstract: Using molecular dynamics simulations with semi-empirical pot… read moreAbstract: Using molecular dynamics simulations with semi-empirical potentials, we demonstrate a method to fabricate carbon nanotubes (CNTs) from graphene nanoribbons (GNRs), by periodically inserting appropriate structural defects into the GNR crystal structure. We have found that various defect types initiate the bending of GNRs and eventually lead to the formation of CNTs. All kinds of carbon nanotubes (armchair, zigzag, chiral) can be produced with this method. The structural characteristics of the resulting CNTs, and the dependence on the different type and distribution of the defects, were examined. The smallest (largest) CNT obtained had a diameter of ∼5 Å (∼39 Å). Proper manipulation of ribbon edges controls the chirality of the CNTs formed. Finally, the effect of randomly distributed defects on the ability of GNRs to transform into CNTs is considered. read less NOT USED (low confidence) Q. Liang and Y. Wei, “Molecular dynamics study on the thermal conductivity and thermal rectification in graphene with geometric variations of doped boron,” Physica B-condensed Matter. 2014. link Times cited: 21 NOT USED (low confidence) X. Qin, T. Gao, W. Yan, X. Guo, and Q. Xie, “Molecular dynamics simulation of graphene bombardment with Si ion,” Journal of Molecular Structure. 2014. link Times cited: 14 NOT USED (low confidence) S. Xiong, J. Ma, S. Volz, and T. Dumitricǎ, “Thermally-active screw dislocations in Si nanowires and nanotubes.,” Small. 2014. link Times cited: 31 Abstract: that in bulk, dislocations can lead to a signifi cant decrea… read moreAbstract: that in bulk, dislocations can lead to a signifi cant decrease in κ in the direction perpendicular to the dislocation line. The widely-used theory of Klemens [ 11 ] accounts for this result with perturbation theory, by including scattering of the phonon states (eigenstates of the harmonic crystal) on the linear and non-linear elastic strain regions localized around the dislocation line. By contrast, in SD NWs and NTs, we encounter the unexplored case of thermal transport along the dislocation line. In this work we combine modern theories based on atomistic simulations in order to understand how the thermal properties of Si NWs and NTs accommodating axial SDs with closed and opened cores might differ from the more studied pristine forms. After computing the SD NW and NT structures with objective molecular dynamics [ 12 ] (MD), we used two main methods, the direct method [ 13 ] and the atomistic Green function (AGF) method [ 14 ] (See simulation section), to reveal an important reduction in κ . This fi nding presents signifi cant interest for nanoscale thermoelectricity. We simulated a set of pristine and SD Si NWs and NTs with cubic diamond structure and hexagonal cross sections. The number of 111 layers L in the cross-section was taken to be 12, 16, 20 and 30, so that the radii of the created NWs ranged from 18.8 A to 47.1 A. Next, from the pristine L = 12 NW we created a set of (L,h) NTs, by systematically removing central atomic layers. We label by h the number of 111 inner layers that have been removed. Finally, in all these structures we introduce SDs with the axis located at the center. We considered minimal Burgers vector of magnitude b = 3.8 A and multiples of it, 2b and 3b. In 1b NWs, the created core structure is the Hornstra core, where all atoms remain fourfold coordinated. SDs twist NWs and NTs. This is the Eshelby twist [ 15 ] γ E , which is well known at the macroscale. The presence of γ E creates challenges for the atomistic simulations as it prevents the applicability of the standard periodic boundary conditions. Here, in order to fi nd optimal morphologies (corresponding to minimum energy) we used objective MD [ 12 ] read less NOT USED (low confidence) Y. Gao, W. Bao, Q. Meng, Y. Jing, and X. Song, “The thermal transport properties of single-crystalline nanowires covered with amorphous shell: A molecular dynamics study,” Journal of Non-crystalline Solids. 2014. link Times cited: 16 NOT USED (low confidence) O. Kwon, H.-W. Kim, and J. Kang, “Energy exchange between vibration modes of a graphene nanoflake oscillator: Molecular dynamics study,” Current Applied Physics. 2014. link Times cited: 8 NOT USED (low confidence) K. Kang, T. Eun, M.-C. Jun, and B.-J. Lee, “Governing factors for the formation of 4H or 6H-SiC polytype during SiC crystal growth: An atomistic computational approach,” Journal of Crystal Growth. 2014. link Times cited: 30 NOT USED (low confidence) L. Li, J. Niu, Y.-qing Yang, and Z. Xia, “Fracture and toughening mechanisms in SiC nanofiber reinforced SiC matrix nanocomposites with amorphous carbon coatings,” Computational Materials Science. 2014. link Times cited: 5 NOT USED (low confidence) N. Krishnan and D. Ghosh, “Chirality dependent elastic properties of single-walled boron nitride nanotubes under uniaxial and torsional loading,” Journal of Applied Physics. 2014. link Times cited: 25 Abstract: The elastic behavior of single-walled boron nitride nanotube… read moreAbstract: The elastic behavior of single-walled boron nitride nanotubes is studied under axial and torsional loading. Molecular dynamics simulation is carried out with a tersoff potential for modeling the interatomic interactions. Different chiral configurations with similar diameter are considered to study the effect of chirality on the elastic and shear moduli. Furthermore, the effects of tube length on elastic modulus are also studied by considering different aspects ratios. It is observed that both elastic and shear moduli depend upon the chirality of a nanotube. For aspect ratios less than 15, the elastic modulus reduces monotonically with an increase in the chiral angle. For chiral nanotubes, the torsional response shows a dependence on the direction of loading. The difference between the shear moduli against and along the chiral twist directions is maximum for chiral angle of 15°, and zero for zigzag (0°) and armchair (30°) configurations. read less NOT USED (low confidence) J. Sun, L. Fang, J. Han, Y. Han, H. Chen, and K. Sun, “Phase transformations of mono-crystal silicon induced by two-body and three-body abrasion in nanoscale,” Computational Materials Science. 2014. link Times cited: 38 NOT USED (low confidence) O. Kwon, H. Hwang, and J. Kang, “Molecular dynamics simulation study on cross-type graphene resonator,” Computational Materials Science. 2014. link Times cited: 3 NOT USED (low confidence) B. Wang, E. Sak-Saracino, N. Gunkelmann, and H. Urbassek, “Molecular-dynamics study of the α ↔ γ phase transition in Fe–C,” Computational Materials Science. 2014. link Times cited: 37 NOT USED (low confidence) Z. Yang, Y. Zhou, T. Wang, Q. Liu, and Z.-X. Lu, “Crack propagation behaviors at Cu/SiC interface by molecular dynamics simulation,” Computational Materials Science. 2014. link Times cited: 60 NOT USED (low confidence) H. Hwang and J. Kang, “Nonvolatile graphene nanoflake shuttle memory,” Physica E-low-dimensional Systems & Nanostructures. 2014. link Times cited: 11 NOT USED (low confidence) J. Kuo, P.-H. Huang, W.-T. Wu, and Y. Hsu, “Molecular dynamics investigations on the interfacial energy and adhesive strength between C60-filled carbon nanotubes and metallic surface,” Materials Chemistry and Physics. 2014. link Times cited: 5 NOT USED (low confidence) G. Fugallo and A. Mattoni, “Thermally induced recrystallization of textured hydrogenated nanocrystalline silicon,” Physical Review B. 2014. link Times cited: 18 NOT USED (low confidence) N. Liao, W. Xue, H. Zhou, and M. Zhang, “Atomistic investigation of structural and mechanical properties of silicon carbon nitride with different SiC/Si3N4 ratios,” Materials Chemistry and Physics. 2013. link Times cited: 4 NOT USED (low confidence) S. Kim, H. Hwang, and J. Kang, “One-dimensional self-assembly of C60 molecules on periodically wrinkled graphene sheet: A Monte Carlo approach,” Physics Letters A. 2013. link Times cited: 9 NOT USED (low confidence) W.-X. Zhou, K. Chen, L.-M. Tang, and L.-J. Yao, “Phonon thermal transport in InAs nanowires with different size and growth directions,” Physics Letters A. 2013. link Times cited: 31 NOT USED (low confidence) W. Yan, Q. Xie, T. Gao, and X. Guo, “MICROSTRUCTURAL EVOLUTION OF SiC DURING MELTING PROCESS,” Modern Physics Letters B. 2013. link Times cited: 2 Abstract: Microstructural evolution of SiC during melting process is s… read moreAbstract: Microstructural evolution of SiC during melting process is simulated with Tersoff potential by using molecular dynamics. Microstructural characteristics are analyzed by radial distribution function, angle distribution function and Voronoi polyhedron index. The results show that the melting point of SiC with Tersoff potential is 3249 K. Tersoff potential can exactly describe the changes of bond length, bond angle and Voronoi clusters during the process of melting. Before melting, the length of the C–C bond, Si–Si bond and Si–C bond is 3.2, 3.2 and 1.9 A, respectively. The bond angle distributes near the tetrahedral bond angle 109°, and the Voronoi clusters are all (4 0 0 0) tetrahedron structures. After melting, the C–C bond and Si–Si bond are reduced, while the Si–C bond is almost unchanged. The range of bond angle distribution is wider than before, and most of the (4 0 0 0) structures turn into three-fold coordinated structures, (2 3 0 0), (0 6 0 0) and (2 2 2 0) structures. The simulation results clearl... read less NOT USED (low confidence) S. Li et al., “Carbon nanotube oscillators encapsulating a platinum nanocluster: A molecular dynamics study,” Physica E-low-dimensional Systems & Nanostructures. 2013. link Times cited: 4 NOT USED (low confidence) S. Kim, S.-Y. Cho, J. Kang, and O. Kwon, “Molecular dynamics simulation study on mechanical responses of nanoindented monolayer-graphene-nanoribbon,” Physica E-low-dimensional Systems & Nanostructures. 2013. link Times cited: 18 NOT USED (low confidence) J. Song and N. Medhekar, “Thermal transport in lattice-constrained 2D hybrid graphene heterostructures,” Journal of Physics: Condensed Matter. 2013. link Times cited: 20 Abstract: The thermal transport properties of hybrid graphene/h-BN het… read moreAbstract: The thermal transport properties of hybrid graphene/h-BN heterostructures are investigated using atomistic simulations. While the thermal conductivity is observed to be significantly limited perpendicular to the graphene/h-BN interface, it is tunable via a composition parallel to the interface. In particular we show that the thermal transport parallel to the interface can be understood by viewing the hybrid system as a series of individual embedded graphene nanoribbons (GNRs) constrained by neighboring h-BN. A mechanistic model is proposed to relate the thermal conductivities of the embedded and free-standing GNRs through a linear function of the composition. The model predictions are demonstrated to be in good agreement with the simulation results. read less NOT USED (low confidence) M. Legesse, M. Nolan, and G. Fagas, “Revisiting the Dependence of the Optical and Mobility Gaps of Hydrogenated Amorphous Silicon on Hydrogen Concentration,” Journal of Physical Chemistry C. 2013. link Times cited: 24 Abstract: The optical absorption properties of hydrogenated amorphous … read moreAbstract: The optical absorption properties of hydrogenated amorphous silicon (a-Si:H) are important in solar applications and from the perspective of fundamental materials science. However, there has been a long-standing question from experiment of the dependence of the optical gap on the hydrogen content in a-Si:H. To reconcile this debate, we present density functional theory simulations of models of hydrogenated a-Si:H, with different hydrogen concentrations up to and including full hydrogen saturation. We discuss the dependence of the optical and mobility gaps in fully saturated and undersaturated a-Si:H. Oversaturation with hydrogen results in a dramatic change in the properties of a-Si:H and is beyond the scope of this paper. For undersaturated hydrogen contents, both gaps increase with increasing hydrogen concentration until hydrogen saturation is achieved. Our key finding is that at saturation the optical and mobility gaps converge to a value independent of the hydrogen content. Our analysis thus resolves ... read less NOT USED (low confidence) W. Wang, C. Yi, and K. Fan, “Molecular dynamics study on temperature and strain rate dependences of mechanical tensile properties of ultrathin nickel nanowires,” Transactions of Nonferrous Metals Society of China. 2013. link Times cited: 48 NOT USED (low confidence) Y. Fan, C. Wu, T. Fang, and T.-H. Chen, “Thermal relaxation and deformation of indented graphene,” Computational Materials Science. 2013. link Times cited: 6 NOT USED (low confidence) A. Imtani, “Thermal conductivity for single-walled carbon nanotubes from Einstein relation in molecular dynamics,” Journal of Physics and Chemistry of Solids. 2013. link Times cited: 13 NOT USED (low confidence) U. Monteverde, M. Migliorato, J. Pal, and D. Powell, “Elastic and vibrational properties of group IV semiconductors in empirical potential modelling,” Journal of Physics: Condensed Matter. 2013. link Times cited: 8 Abstract: We have developed an interatomic potential that with a singl… read moreAbstract: We have developed an interatomic potential that with a single set of parameters is able to accurately describe at the same time the elastic, vibrational and thermodynamics properties of semiconductors. The simultaneous inclusion of radial and angular forces of the interacting atom pairs (short range) together with the influence of the broken crystal symmetry when the atomic arrangement is out of equilibrium (long range) results in correct predictions of all of the phonon dispersion spectrum and mode-Grüneisen parameters of silicon and germanium. The long range interactions are taken into account up to the second nearest neighbours, to correctly influence the elastic and vibrational properties, and therefore represent only a marginal computational cost compared to the full treatment of other proposed potentials. Results of molecular dynamics simulations are compared with those of ab initio calculations, showing that when our proposed potential is used to perform the initial stages of the structural relaxation, a significant reduction of the computational time needed during the geometry optimization of density functional theory simulations is observed. read less NOT USED (low confidence) J. Zhang et al., “Superplastic nanocrystalline ceramics at room temperature and high strain rates,” Scripta Materialia. 2013. link Times cited: 19 NOT USED (low confidence) J. Sun, L. Fang, J. Han, Y. Han, H. Chen, and K. Sun, “Abrasive wear of nanoscale single crystal silicon,” Wear. 2013. link Times cited: 26 NOT USED (low confidence) X. Tang, Z. Xie, T. Yin, J. W. Wang, P.-piao Yang, and Q. Huang, “Classical molecular dynamics simulations of carbon nanofiber nucleation: the effect of carbon concentration in Ni carbide.,” Physical chemistry chemical physics : PCCP. 2013. link Times cited: 13 Abstract: The atomic-scale nucleation mechanism of vapor-grown carbon … read moreAbstract: The atomic-scale nucleation mechanism of vapor-grown carbon nanofibers (CNFs) is investigated using classical molecular dynamics simulations with a developed parameterization. Carbon precipitation and graphene plane formation are simulated, taking into account the carbon concentration (CC) in Ni carbide. The simulated results show that the carbon atoms formed sp(2) networks or sp chains in the Ni nanocrystals and then precipitated onto the Ni surface with distinct precipitation dynamics and time intervals that are dependent on the CC. The lowest-energy configurations of the precipitated carbon atoms exhibit an irregular corrugated network, a defective graphene plane, and separate defective graphene planes under high, medium, and low CC, respectively. These observations are in good agreement with the microstructural characteristics of different types of CNFs from experiments. Pair correlation function calculations show that the precipitated carbon structures exhibit different graphite orderings. The study reveals the atomistic CNF nucleation mechanism and emphasizes the critical role of metal carbide CC in the microstructure formation of CNFs during synthesis. read less NOT USED (low confidence) L. Chen, Y. Wang, H. Bu, and Y. Chen, “Simulations of the anisotropy of friction force between a silicon tip and a substrate at nanoscale,” Proceedings of the Institution of Mechanical Engineers, Part N: Journal of Nanoengineering and Nanosystems. 2013. link Times cited: 3 Abstract: In this article, the anisotropy of the friction force with a… read moreAbstract: In this article, the anisotropy of the friction force with a variety of rotation angles between a silicon tip and a substrate was investigated using molecular dynamics simulations. When the silicon tip slides over the silicon substrate under incommensurate contacting surfaces, the results of the simulations illustrate that the sliding friction forces decrease with the increase of the rotation angle from 0° to 45° and increase with the increase of the rotation angle from 45° to 90°. Furthermore, an approximate symmetrical curve of the friction force for the 45° angle can be obtained, and the friction force is minimum and close to superlubricity at the 45° angle. However, at the same angle, the friction force stops decreasing with the increase of the temperature and its magnitude depends mainly on the degree of the commensurability of the contacting surfaces rather than the temperature. read less NOT USED (low confidence) K. Kleovoulou and P. Kelires, “Stress state of embedded Si nanocrystals,” Physical Review B. 2013. link Times cited: 19 NOT USED (low confidence) X. W. Zhou, D. Ward, J. E. Martin, F. Swol, J. Cruz-Campa, and D. Zubia, “Stillinger-Weber potential for the II-VI elements Zn-Cd-Hg-S-Se-Te,” Physical Review B. 2013. link Times cited: 86 Abstract: X. W. Zhou,1,* D. K. Ward,2 J. E. Martin,3 F. B. van Swol,4 … read moreAbstract: X. W. Zhou,1,* D. K. Ward,2 J. E. Martin,3 F. B. van Swol,4 J. L. Cruz-Campa,5 and D. Zubia6 1Mechanics of Materials Department, Sandia National Laboratories, Livermore, California 94550, USA 2Radiation and Nuclear Detection Materials and Analysis Department, Sandia National Laboratories, Livermore, California 94550, USA 3Nanoscale Sciences Department, Sandia National Laboratories, Albuquerque, New Mexico 87185, USA 4Computational Materials and Data Science Department, Sandia National Laboratories, Albuquerque, New Mexico 87185, USA 5MEMS Technologies Department, Sandia National Laboratories, Albuquerque, New Mexico 87185, USA 6Department of Electrical Engineering, University of Texas at El Paso, El Paso, Texas 79968, USA (Received 30 May 2013; published 9 August 2013; corrected 13 November 2013) read less NOT USED (low confidence) W. Xue, N. Liao, H. Zhou, and M. Zhang, “Numerical investigation of amorphous silicon carbonitrides ceramics,” International Journal of Materials and Structural Integrity. 2013. link Times cited: 0 Abstract: Polymer-derived silicon carbonitrides (SiCN) ceramics are wi… read moreAbstract: Polymer-derived silicon carbonitrides (SiCN) ceramics are wide band gap semiconductors with excellent properties at high temperature, which are attributed to their unique nanostructure. As experiments still have problems to study the nano-structure of SiCN, in this work, molecular dynamics simulations were conducted to study the nano-structure of amorphous SiCN with different carbon contents. The results of bonds distribution, interfacial structure and Si-centred tetrahedrons give an insight on how composition influences the structures of nano-domain and domains interface. read less NOT USED (low confidence) S. Satake, K. Ono, M. Shibahara, and J. Taniguchi, “Molecular dynamics simulation of Ga+ ion collision process,” Nuclear Instruments & Methods in Physics Research Section B-beam Interactions With Materials and Atoms. 2013. link Times cited: 8 NOT USED (low confidence) P. Colombo, G. Mera, R. Riedel, and G. Sorarù, “7. Polymer-Derived Ceramics: 40 Years of Research and Innovation in Advanced Ceramics†.” 2013. link Times cited: 41 NOT USED (low confidence) X. Li, J. Chen, C. Yu, and G. Zhang, “Comparison of isotope effects on thermal conductivity of graphene nanoribbons and carbon nanotubes,” Applied Physics Letters. 2013. link Times cited: 70 Abstract: By using molecular dynamics simulation, we explore the isoto… read moreAbstract: By using molecular dynamics simulation, we explore the isotope effect on thermal conductivity of graphene nanoribbons (GNRs) and carbon nanotubes (CNTs). For both GNRs and CNTs, the lattice thermal conductivity decreases when isotope concentration increases from 0% to 30%. The thermal conductivity reduction ratio in GNRs is less than that in CNTs. For example, thermal conductivity of CNT with 5% 13C concentration is 25% lower than that of pure CNTs; however, the reduction in thermal conductivity of GNRs with the same isotope concentration is only about 12%. Lattice dynamics analysis reveals that these phenomena are related to the phonon localization. read less NOT USED (low confidence) K. Tada, M. Yasuda, T. Mitsueda, R. Honda, H. Kawata, and Y. Hirai, “Molecular dynamics study of electron irradiation effects on mechanical properties of carbon nanotubes,” Microelectronic Engineering. 2013. link Times cited: 9 NOT USED (low confidence) M. Hu and D. Poulikakos, “Graphene mediated thermal resistance reduction at strongly coupled interfaces,” International Journal of Heat and Mass Transfer. 2013. link Times cited: 56 NOT USED (low confidence) C. Yu and G. Zhang, “The underestimated thermal conductivity of graphene in thermal-bridge measurement: A computational study,” Journal of Applied Physics. 2013. link Times cited: 11 Abstract: The effect of substrate coupling on thermal conductivity of … read moreAbstract: The effect of substrate coupling on thermal conductivity of graphene is studied by using molecular dynamic simulations. It was found that heat flux along real suspended single-layer graphene is only 40% with respect to that in the ideal suspended single-layer graphene, due to remarkable temperature jump and thermal contact resistance at the contact region. With the strength of inter-layer (or graphene-substrate) interaction increases, the temperature jump increases and leads to further reduction in heat flux and the estimated thermal conductivity. Our results give a reasonable explanation to the underestimated thermal conductivity of graphene in thermal-bridge measurement. read less NOT USED (low confidence) J. Kang, H.-W. Kim, K.-sub Kim, and J. H. Lee, “Molecular dynamics modeling and simulation of a graphene-based nanoelectromechanical resonator,” Current Applied Physics. 2013. link Times cited: 37 NOT USED (low confidence) B. Li, “Formation of helicity in an armchair single-walled carbon nanotube during tensile loading,” Computational Materials Science. 2013. link Times cited: 4 NOT USED (low confidence) J. Kang and S. Lee, “Molecular dynamics study on the bending rigidity of graphene nanoribbons,” Computational Materials Science. 2013. link Times cited: 34 NOT USED (low confidence) I. Chang, “Molecular dynamics investigation of carbon nanotube resonance,” Modelling and Simulation in Materials Science and Engineering. 2013. link Times cited: 18 Abstract: In this work, a methodology to directly extract resonant inf… read moreAbstract: In this work, a methodology to directly extract resonant information from an equilibrium molecular dynamics simulation is proposed and demonstrated by analyzing the vibrational behavior of carbon nanotubes (CNTs). Different vibrational motions, i.e. longitudinal, transverse, rotational and radial, could be easily distinguished and computed through the time sequence of the velocity components of atoms at the equilibrating process. Fast Fourier transform is adopted to perform the transformation of vibration information from time to frequency domain. The effects of CNT length, radius and boundary condition on the resonant behaviors of CNTs are systematically investigated. Moreover, the simulation results are compared with those predicted based on the Euler–Bernoulli beam theory. Note that the simulated longitudinal and rotational resonant behaviors agree quite well with the theoretical prediction and a slight deviation is observed in the transverse prediction. read less NOT USED (low confidence) T. Li, D. Donadio, and G. Galli, “Ice nucleation at the nanoscale probes no man’s land of water,” Nature Communications. 2013. link Times cited: 111 NOT USED (low confidence) S. Daraszewicz and D. Duffy, “Hybrid continuum–atomistic modelling of swift heavy ion radiation damage in germanium,” Nuclear Instruments & Methods in Physics Research Section B-beam Interactions With Materials and Atoms. 2013. link Times cited: 23 NOT USED (low confidence) S. Ebrahimi-Nejad and A. Shokuhfar, “Compressive buckling of open-ended boron nitride nanotubes in hydrogen storage applications,” Physica E-low-dimensional Systems & Nanostructures. 2013. link Times cited: 33 NOT USED (low confidence) C. Hou, J. Xu, P. Wang, W. Huang, and X. Wang, “Efficient GPU-accelerated molecular dynamics simulation of solid covalent crystals,” Comput. Phys. Commun. 2013. link Times cited: 28 NOT USED (low confidence) K. Dudeck, L. A. Marqués, A. Knights, R. Gwilliam, and G. Botton, “Sub-ångstrom experimental validation of molecular dynamics for predictive modeling of extended defect structures in Si.,” Physical review letters. 2013. link Times cited: 15 Abstract: In this Letter we present the detailed, quantitative compari… read moreAbstract: In this Letter we present the detailed, quantitative comparison between experimentally and theoretically derived structures of the extended {311} defect in silicon. Agreement between experimental and theoretical column positions of better than ±0.05 nm has been achieved for all 100 atomic columns in the defect structure. This represents a calculated density of 5.5×10(14) silicon interstitials per cm(2) on {311} planes, in agreement with previous work [S. Takeda, Jpn. J. Appl. Phys., Part 2, 30, L639 (1991)]. We show that although the {311} defect is made up of five-, six-, seven-, and eight-member rings, the shape of these rings varies as a function of position along the defect, and these variations can be determined experimentally with high precision and accuracy. The excellent agreement between the calculated and experimentally derived structure, including the position of atomic columns and the shape of the distinct structural units of the defect, provides strong evidence for the quality and robustness of the molecular dynamics simulation approach for structural studies of defects. The experimental approach is straightforward, without the need for complicated image processing methods, and is therefore widely applicable. read less NOT USED (low confidence) X. Lu, H. Wang, M. Chen, L. Fan, C. Wang, and S. Jia, “Investigation of the nanomechanical properties of β-Si3N4 nanowires under three-point bending via molecular dynamics simulation.,” Physical chemistry chemical physics : PCCP. 2013. link Times cited: 9 Abstract: The nanowire with an aspect ratio of 3 : 1 possesses a highe… read moreAbstract: The nanowire with an aspect ratio of 3 : 1 possesses a higher bending stress of 15.85 GPa. It can be observed that the initial Si-Si bond and N atom defects with a coordination number of 2, subsequently evolving to 0 and 1, with Si evolving from 5 to 6 and 7, are mainly responsible for the final fracture. read less NOT USED (low confidence) L. W. Chen, Y. Shibuta, M. Kambara, and T. Yoshida, “Nanocluster dynamics in fast rate epitaxy under mesoplasma condition,” Chemical Physics Letters. 2013. link Times cited: 5 NOT USED (low confidence) C. Ciobanu, C. Wang, and K. Ho, “Atomic Structure of Surfaces, Interfaces, and Nanowires.” 2013. link Times cited: 0 NOT USED (low confidence) D. Antonov et al., “Statistical investigations on nitrogen-vacancy center creation,” Applied Physics Letters. 2013. link Times cited: 34 Abstract: Quantum information technologies require networks of interac… read moreAbstract: Quantum information technologies require networks of interacting defect bits. Color centers, especially the nitrogen vacancy (NV−) center in diamond, represent one promising avenue, toward the realisation of such devices. The most successful technique for creating NV− in diamond is ion implantation followed by annealing. Previous experiments have shown that shallow nitrogen implantation (<10 keV) results in NV− centers with a yield of 0.01%–0.1%. We investigate the influence of channeling effects during shallow implantation and statistical diffusion of vacancies using molecular dynamics and Monte Carlo simulation techniques. Energy barriers for the diffusion process were calculated using density functional theory. Our simulations show that 25% of the implanted nitrogens form a NV center, which is in good agreement with our experimental findings. read less NOT USED (low confidence) O. Kwon, J. H. Lee, J. Park, K.-sub Kim, and J. Kang, “Molecular dynamics simulation study on graphene-nanoribbon-resonators tuned by adjusting axial strain,” Current Applied Physics. 2013. link Times cited: 22 NOT USED (low confidence) C. Y. Chuang, Q. Li, D. Leonhardt, S. Han, and T. Sinno, “Atomistic analysis of Ge on amorphous SiO2 using an empirical interatomic potential,” Surface Science. 2013. link Times cited: 14 NOT USED (low confidence) X. Tan, H. Liu, J. Wei, J. Shi, X. Tang, and C. Uher, “Thermoelectric properties of small diameter carbon nanowires,” Carbon. 2013. link Times cited: 8 NOT USED (low confidence) I. Savi’c, D. Donadio, F. Gygi, and G. Galli, “Dimensionality and heat transport in Si-Ge superlattices,” Applied Physics Letters. 2013. link Times cited: 45 Abstract: We investigated how dimensionality affects heat transport in… read moreAbstract: We investigated how dimensionality affects heat transport in Si-Ge superlattices (SLs) by computing the thermal conductivity of planar superlattices and arrays of Ge nanowires (NWs) and nanodots embedded in Si. We studied superlattices with ∼10 nm periods using a fully atomistic Monte Carlo solution of the Boltzmann transport equation in the relaxation time approximation. We found that for periods larger than 4 nm, the room temperature cross-plane conductivity of planar superlattices with equally thick Si and Ge layers is larger than that of their nanowire and dot counterparts of similar sizes (up to 100%), while the trend is reversed below 4 nm. read less NOT USED (low confidence) S. S. Gupta, F. Rahman, M. J. Siddiqui, and P. A. Alvi, “Strain profile in nitride based multilayer nano-heterostructures,” Physica B-condensed Matter. 2013. link Times cited: 17 NOT USED (low confidence) X. J. Yang and X. Yang, “Molecular Dynamics Simulation of Nanoscale Contact Process of Plane on Plane,” Advanced Materials Research. 2013. link Times cited: 0 Abstract: Considering the process of the plane of rectangular indenter… read moreAbstract: Considering the process of the plane of rectangular indenter contacting on the plane of rectangular basal body in nanoscale as research object, molecular dynamics method is used for modeling, solving and simulation analysis. The change of atomic state and acting force in the contact process of nanoscale plane and plane is analysis from atomic aspect. The result showed that: when the plane of the rectangular indenter is from the surface of the base body a certain distance, due to attractive force, produced by inter-atomic force, the surface of the substrate produces atoms projection phenomenon; As the indenter continue to move down,the inter-atomic force becomes repulsive force, generates the contact pressure which gradually increases as the contact depth increases; The lattice under the indenter is deformed with pressure action. When indenter is in disengagement stage, the contact pressure decreases rapidly, and appears to reverse tensile stress. With action of the reverse tensile stress, dislocation configuration gradually change and restructuring. At same time, due to the surface effect, a number of substrate atoms are adsorbed in the surface of indenter, which caused by adhesion,and pulled out of the base body with the indenter. read less NOT USED (low confidence) S. D. D. Nath, C. H. Wong, V. Sorkin, Z. Sha, Y. W. Zhang, and S. G. Kim, “Study of the Spreading of Perfluoropolyether Lubricants on a Diamond-Like Carbon Film,” Tribology Transactions. 2013. link Times cited: 15 Abstract: Nonpolar perfluoropolyether (PFPE) Z and PFPE Zdol with pola… read moreAbstract: Nonpolar perfluoropolyether (PFPE) Z and PFPE Zdol with polar end groups are widely used as hard disk lubricants for protecting carbon overcoats by reducing friction between the hard disk and head during movement of the head while reading and writing data on the hard disk. We investigate the spreading phenomenon of PFPE Z and PFPE Zdol on a thin diamond-like carbon (DLC) film adopting molecular dynamics (MD) simulations based on a coarse-grained bead-spring model to describe the thickness profiles and molecular movement, which evolve with time and temperature. In the present article, the hard disk surface was considered as a DLC and the position of its carbon atoms was obtained by heating and quenching the face-centered cubic (FCC) or body-centered cubic (BCC) diamond structures by MD simulation using the Tersoff potential. To simulate PFPE Z and PFPE Zdol on a thin DLC film using a coarse-grained bead-spring model based on finitely extensible nonlinear elastic potential and nonbonded potential, the original DLC thin film was compressed to half of its original configuration in all three spatial dimensions. How PFPE Z and PFPE Zdol on the DLC surface spread with time are briefly discussed. How the spreading profile of PFPE Z and PFPE Zdol on the DLC film spreads laterally and on the DLC film as a circular shape beyond its original position is also discussed. The effect of temperature on the film thickness and spreading area of PFPE Z and PFPE Zdol on the DLC film is also discussed. We show that the time dependence for the spreading of PFPE Z and PFPE Zdol droplets deviated from the expected proportionality to the square root of time in their spreading profiles with time. The model-calculated spreading rate of PFPE Z and PFPE Zdol on a thin DLC film increased inversely with absolute temperature as expected. read less NOT USED (low confidence) Z. Sha, P. S. Branicio, Q. Pei, V. Sorkin, and Y.-W. Zhang, “A modified Tersoff potential for pure and hydrogenated diamond-like carbon,” Computational Materials Science. 2013. link Times cited: 56 NOT USED (low confidence) O. Kwon, K.-sub Kim, J. Park, and J. Kang, “Molecular dynamics modeling and simulations of graphene-nanoribbon-resonator-based nanobalance as yoctogram resolution detector,” Computational Materials Science. 2013. link Times cited: 38 NOT USED (low confidence) A. Shokuhfar and S. Ebrahimi-Nejad, “Effects of structural defects on the compressive buckling of boron nitride nanotubes,” Physica E-low-dimensional Systems & Nanostructures. 2013. link Times cited: 33 NOT USED (low confidence) B. Ai, M. An, and W. Zhong, “Nonlinear thermal conductance in single-wall carbon nanotubes: negative differential thermal resistance.,” The Journal of chemical physics. 2013. link Times cited: 16 Abstract: Nonlinear thermal conductance in single-wall carbon nanotube… read moreAbstract: Nonlinear thermal conductance in single-wall carbon nanotubes (CNTs) is investigated by applying the large temperature difference. From the classical molecular dynamics simulations, we observe the occurrence of negative differential thermal resistance (NDTR) in CNTs, namely, there exist a region of temperature difference, where the heat flux decreases as the applied temperature difference increases. Double NDTRs even occur in some CNTs with special diameters. When the length of CNTs increases, NDTR regime reduces and vanishes in the thermodynamic limit. CNTs with NDTR may be the good candidate materials for designing thermal devices such as thermal transistors, thermal logic gates, and thermal memory. read less NOT USED (low confidence) E. L. Cook, K. D. Krantzman, and B. Garrison, “Surface topography effects in C60 bombardment of Si,” Surface and Interface Analysis. 2013. link Times cited: 6 Abstract: Molecular dynamics simulations of multi‐impact bombardment o… read moreAbstract: Molecular dynamics simulations of multi‐impact bombardment of Si with 20‐keV C60 projectiles at normal incidence are performed for a total of 400 impacts, which corresponds to a fluence of of 7 × 1013 C60/cm2. The surface is roughened by successive bombardment and achieves a steady‐state root mean square roughness of 2.0 nm after about 100 impacts. There is a direct correlation between the local topography of the region around the impact point and the sputtered yield. The greatest yields of sputtered atoms are produced when the projectile impacts a mound, which is characterized by the height of the surface relative to the average surface height. When the projectile hits a local region corresponding to a crater with a height much less than the average surface height, the sputtered yield is very small. However, it is these trajectories that deposit carbon atoms at depths beneath the region from which atoms are sputtered, and are responsible for the buildup of carbon at the bottom of craters. Copyright © 2012 John Wiley & Sons, Ltd. read less NOT USED (low confidence) N. Liao, G. Ma, M. Zhang, and W. Xue, “Investigation on mechanical properties of silicon nitride composite reinforced by SiC nanoparticles,” Journal of Composite Materials. 2012. link Times cited: 2 Abstract: The design of silicon nitride reinforced by silicon nitride … read moreAbstract: The design of silicon nitride reinforced by silicon nitride (SiC) nanoparticles is attractive due to its improved high-temperature strength and resistance to oxidation. The high-temperature mechanical behaviors of these composites are difficult to be investigated because it is hard to measure these structural changes in the mechanical test. In this paper, we applied the molecular dynamics simulations to study the effects of size and quantity of SiC clusters on mechanical properties of silicon nitride-based composites. The results show the model with a SiC diameter of 2.4 nm has the largest stress and Young’s modulus, and the stress and Young’s modulus tend to be smaller when the quantity of SiC clusters increases. With an increasing temperature, the Young’s modulus of the structure with the largest clusters decreases before 1300 K and then jumps to 97 GPa at 1500 K, both the loss and jump in Young modulus is related to the interfacial effects between matrix and clusters. read less NOT USED (low confidence) N. Liao, “Large-Scale Molecular Dynamics Modeling of a-SiO2,” Advanced Materials Research. 2012. link Times cited: 0 Abstract: Silicon dioxide plays an important role in integrated circui… read moreAbstract: Silicon dioxide plays an important role in integrated circuits and microelectronics. However, the experiments have limitations in micro/nano-scale characterization of fracture properties at high temperatures. In this paper, the structural and fracture properties of amorphous silicon dioxide (a-SiO2) were studied at temperatures up to 1500K. The simulation results consist with the experiments on pair distribution functions, structure factor and angular distributions. read less NOT USED (low confidence) J. Kang, H. Hwang, and K.-sub Kim, “Molecular dynamics study on vibrational properties of graphene nanoribbon resonator under tensile loading,” Computational Materials Science. 2012. link Times cited: 19 NOT USED (low confidence) B. Gu, L. Zhang, W. Yuan, and Y. Ning, “A Multi-Scale Computational Method Integrating Finite Element Method with Atomic Interactions of Materials,” Cmes-computer Modeling in Engineering & Sciences. 2012. link Times cited: 1 Abstract: Bridging the atomic and continuous analyses is an important … read moreAbstract: Bridging the atomic and continuous analyses is an important aspect in multi-scale mechanics. This paper develops a computational method to integrate the atomic potential of a material with the finite element method. The novelty of this method is that strain energy is calculated from the atomic potential without the assumption in the Cauchy-Born rule that deformation in a virtual atomic cell is homogeneous. In this new method, the virtual atomic cell deformation is interpolated according to the continuum displacements associated with the shape functions. The applications of the method to single crystal Si and Ge bars under uniaxial tension and compression show that with a proper construction of the virtual atomic cell, the Young’s modulii in the <100>, <110> and <111> directions obtained are in good agreement with the experimental measurements and MD simulations in the literature. Moreover, the simulated material’s response to tension and compression is consistent with the interatomic interactions. read less NOT USED (low confidence) Y. Jeng, “Development of Innovative Algorithm for Nanomechanics and its Applications to the Characterization of Materials,” Key Engineering Materials. 2012. link Times cited: 0 Abstract: Understanding major mechanisms affecting material strength s… read moreAbstract: Understanding major mechanisms affecting material strength such as grain size, grain orientation and dislocation mechanism from atomistic viewpoint can empower scientists and engineers with the capability to produce vastly strengthened materials. Computational studies can offer the possibility of carrying out simulations of material properties at both larger length scales and longer times than direct atomistic calculations. The study has conducted theoretical modeling and experimental testing to investigate nanoscale mechanisms related to material strength and interfacial performance. Various computational algorithms in nanomechanics including energy minimization, molecular dynamics and hybrid approaches that mix atomistic and continuum methods to bridge the length and time scales have been used to thoroughly study the deformation and strengthening mechanisms. Our study has also performed experiments including depth-sensing indentation technique and in-situ pico-indentation to characterize the nanomechanisms related to material strength and tribological performance. In this project, we have developed the innovative mutil-scale algorithms in the area of nanomechanics. These approaches were used to studies the defect effect on the mechanical properties of thin film, mechanical properties of nanotubes, and tribological phenomena at nanoscale interfaces. read less NOT USED (low confidence) Q. Liu and S. Shen, “On the large-strain plasticity of silicon nanowires: Effects of axial orientation and surface,” International Journal of Plasticity. 2012. link Times cited: 33 NOT USED (low confidence) H. Zhao, C. Shi, P. Zhang, L. Zhang, H. Huang, and J. Yan, “Research on the effects of machining-induced subsurface damages on mono-crystalline silicon via molecular dynamics simulation,” Applied Surface Science. 2012. link Times cited: 62 NOT USED (low confidence) X. Zhang, M. Hu, K. Giapis, and D. Poulikakos, “Schemes for and Mechanisms of Reduction in Thermal Conductivity in Nanostructured Thermoelectrics,” Journal of Heat Transfer-transactions of The Asme. 2012. link Times cited: 20 Abstract: Nonequilibrium molecular dynamics (NEMD) simulations were pe… read moreAbstract: Nonequilibrium molecular dynamics (NEMD) simulations were performed to investigate schemes for enhancing the energy conversion efficiency of thermoelectric nanowires (NWs), including (1) roughening of the nanowire surface, (2) creating nanoparticle inclusions in the nanowires, and (3) coating the nanowire surface with other materials. The enhancement in energy conversion efficiency was inferred from the reduction in thermal conductivity of the nanowire, which was calculated by imposing a temperature gradient in the longitudinal direction. Compared to pristine nanowires, our simulation results show that the schemes proposed above lead to nanocomposite structures with considerably lower thermal conductivity (up to 82% reduction), implying ~5X enhancement in the ZT coefficient. This significant effect appears to have two origins: (1) increase in phonon-boundary scattering and (2) onset of interfacial interference. The results suggest new fundamental–yet realizable ways to improve markedly the energy conversion efficiency of nanostructured thermoelectrics. read less NOT USED (low confidence) J. Kang, J. H. Lee, H. Hwang, and K.-sub Kim, “Developing accelerometer based on graphene nanoribbon resonators,” Physics Letters A. 2012. link Times cited: 30 NOT USED (low confidence) H. Liu, H. Zeng, T. Pan, W. Huang, and Y. Lin, “Pressure dependency of thermal boundary conductance of carbon nanotube/silicon interface: A molecular dynamics study,” Journal of Applied Physics. 2012. link Times cited: 8 Abstract: Thermal boundary conductance (TBC) of open carbon nanotube (… read moreAbstract: Thermal boundary conductance (TBC) of open carbon nanotube (CNT) and crystal silicon was investigated by the method of molecular dynamics (MD) simulation. Van der Waals interaction was used to form the interface between the vertically mounted CNT and the silicon surface. The interfacial TBC was extracted from the thermal relaxation between CNT and Si with different initial temperatures. An enhancement of TBC was spotted with the increase of the external pressure. At the interfacial region, the phonon densities of states of CNT and Si were altered by the external pressure, especially at the frequency between 2 THz and 15 THz, which could be associated with the enhancement of TBC. read less NOT USED (low confidence) X. Luo, S. Goel, and R. Reuben, “A quantitative assessment of nanometric machinability of major polytypes of single crystal silicon carbide,” Journal of The European Ceramic Society. 2012. link Times cited: 137 NOT USED (low confidence) M. Yasuda, Y. Chihara, R. Mimura, Y. Kimoto, H. Kawata, and Y. Hirai, “Performance evaluation of carbon nanotube-based oscillators and bearings under electron irradiation: Molecular dynamics study,” Microelectronic Engineering. 2012. link Times cited: 10 NOT USED (low confidence) O. Kwon, G.-Y. Lee, H. Hwang, and J. Kang, “Molecular dynamics modeling and simulations to understand gate-tunable graphene-nanoribbon-resonator,” Physica E-low-dimensional Systems & Nanostructures. 2012. link Times cited: 21 NOT USED (low confidence) S. Leoni, I. Baburin, S. E. Boulfelfel, and D. Selli, “Redesign of Carbon Materials for Novel Storage, Mechanical and Optical Properties,” MRS Proceedings. 2012. link Times cited: 0 NOT USED (low confidence) C. Han, P. He, and B. Zheng, “Numerical Simulation of the Effect of Crack on the Tensile Mechanical Properties of Graphene,” International Conference on Digital Manufacturing and Automation. 2012. link Times cited: 0 Abstract: Molecular dynamics (MD) method with Tersoff bond-order inter… read moreAbstract: Molecular dynamics (MD) method with Tersoff bond-order interatomic potential function is applied to study (1) the impact of the crack-length on the tensile mechanical properties of graphene, and (2) how the crack affects the temperature correlation of graphene. The results show that the increase of crack length significantly reduces the tensile strength and tensile strain, and have an effect on Young's modulus. Meanwhile, the sensitivity of the tensile strength and tensile rate on temperature will be weakened by crack. read less NOT USED (low confidence) M. Rahmat and P. Hubert, “Molecular Dynamics Simulation of Single-Walled Carbon Nanotube – PMMA Interaction,” Journal of Nano Research. 2012. link Times cited: 11 Abstract: Mechanical performance of nanocomposites is strongly depende… read moreAbstract: Mechanical performance of nanocomposites is strongly dependent on the interaction properties between the matrix and the reinforcement. Therefore, the aim of this work is to investigate the carbon nanotube – polymer interaction in nanocomposites. With the ever-increasing power of computers, and enormous advantage of parallel computing techniques, molecular dynamics is the favourite technique to simulate various atomic and molecular systems for this application. In order to simulate nanocomposites using molecular dynamics techniques, a stepwise approach was followed. First, a single-walled carbon nanotube was modelled as the reinforcing material. The validity of the model was examined by applying simple tension boundary conditions and comparing the results with the literature. Next, PMMA chains, with different geometries and molecular weights, were modelled employing the chemical potentials extracted from the literature. The last step included the modelling of the nanotubes surrounded by the matrix material and the investigation of the energy minimization for the system. Based on the results, the non-covalent interaction energy between a single-walled carbon nanotube and the PMMA matrix was obtained. read less NOT USED (low confidence) V. Borodin, “Molecular dynamics simulation of annealing of post-ballistic cascade remnants in silicon,” Nuclear Instruments & Methods in Physics Research Section B-beam Interactions With Materials and Atoms. 2012. link Times cited: 21 NOT USED (low confidence) K.-sub Kim, J. Park, H. Hwang, and J. Kang, “A molecular dynamics study on carbon-nanotube oscillators with intertube gaps,” Physica E-low-dimensional Systems & Nanostructures. 2012. link Times cited: 16 NOT USED (low confidence) X. Zhang, M. Hu, and D. Poulikakos, “A low-frequency wave motion mechanism enables efficient energy transport in carbon nanotubes at high heat fluxes.,” Nano letters. 2012. link Times cited: 41 Abstract: The great majority of investigations of thermal transport in… read moreAbstract: The great majority of investigations of thermal transport in carbon nanotubes (CNTs) in the open literature focus on low heat fluxes, that is, in the regime of validity of the Fourier heat conduction law. In this paper, by performing nonequilibrium molecular dynamics simulations we investigated thermal transport in a single-walled CNT bridging two Si slabs under constant high heat flux. An anomalous wave-like kinetic energy profile was observed, and a previously unexplored, wave-dominated energy transport mechanism is identified for high heat fluxes in CNTs, originated from excited low frequency transverse acoustic waves. The transported energy, in terms of a one-dimensional low frequency mechanical wave, is quantified as a function of the total heat flux applied and is compared to the energy transported by traditional Fourier heat conduction. The results show that the low frequency wave actually overtakes traditional Fourier heat conduction and efficiently transports the energy at high heat flux. Our findings reveal an important new mechanism for high heat flux energy transport in low-dimensional nanostructures, such as one-dimensional (1-D) nanotubes and nanowires, which could be very relevant to high heat flux dissipation such as in micro/nanoelectronics applications. read less NOT USED (low confidence) B. Ai, W. Zhong, and B. Hu, “Dimension Dependence of Negative Differential Thermal Resistance in Graphene Nanoribbons,” Journal of Physical Chemistry C. 2012. link Times cited: 22 Abstract: Negative differential thermal resistance (NDTR) in approxima… read moreAbstract: Negative differential thermal resistance (NDTR) in approximate graphene nanoribbons (GNRs) is investigated from one dimension to three dimensions by using classical molecular dynamics method. For single-layer GNRs, NDTR cannot be observed for very narrow GNRs (one dimension), and NDTR appears when the width of GNRs increases (two dimensions). However, NDTR disappears gradually on further increasing the width. For multiple-layer GNRs, when the number of the layers increases, GNRs change from a 2-D system to 3-D system, and NDTR regime reduces and eventually disappears. In addition, when the length of GNRs increases, NDTR regime also reduces and vanishes in the thermodynamic limit. These effects may be useful for designing thermal devices where NDTR plays an important role. read less NOT USED (low confidence) X. Shen, X. Shen, Y. Xiao, W. Dong, X. Yan, and H. F. Busnengo, “Molecular dynamics simulations based on reactive force-fields for surface chemical reactions,” Computational and Theoretical Chemistry. 2012. link Times cited: 5 NOT USED (low confidence) R. Promyoo, H. El-Mounayri, and K. Varahramyan, “AFM-Based Nanoindentation Process: A Comparative Study.” 2012. link Times cited: 4 Abstract: Atomic force microscopy (AFM) has been widely used for nanom… read moreAbstract: Atomic force microscopy (AFM) has been widely used for nanomachining and fabrication of micro/nanodevices. This paper describes the development and validation of computational models for AFM-based nanomachining. Molecular Dynamics (MD) technique is used to model and simulate mechanical indentation at the nanoscale for different types of materials, including gold, copper, aluminum, and silicon. The simulation allows for the prediction of indentation forces at the interface between an indenter and a substrate. The effects of tip materials on machined surface are investigated. The material deformation and indentation geometry are extracted based on the final locations of the atoms, which have been displaced by the rigid tool. In addition to the modeling, an AFM was used to conduct actual indentation at the nanoscale, and provide measurements to which the MD simulation predictions can be compared. The MD simulation results show that surface and subsurface deformation found in the case of gold, copper and aluminum have the same pattern. However, aluminum has more surface deformation than other materials. Two different types of indenter tips including diamond and silicon tips were used in the model. More surface and subsurface deformation can be observed for the case of nanoindentation with diamond tip. The indentation forces at various depths of indentation were obtained. It can be concluded that indentation force increases as depth of indentation increases. Due to limitations on computational time, the quantitative values of the indentation force obtained from MD simulation are not comparable to the experimental results. However, the increasing trends of indentation force are the same for both simulation and experimental results.Copyright © 2012 by ASME read less NOT USED (low confidence) Y. Katoh, L. Snead, I. Szlufarska, and W. J. Weber, “Radiation effects in SiC for nuclear structural applications,” Current Opinion in Solid State & Materials Science. 2012. link Times cited: 317 NOT USED (low confidence) I. Duchemin and D. Donadio, “Atomistic simulations of heat transport in real-scale silicon nanowire devices,” Applied Physics Letters. 2012. link Times cited: 14 Abstract: Utilizing atomistic lattice dynamics and scattering theory, … read moreAbstract: Utilizing atomistic lattice dynamics and scattering theory, we study thermal transport in nanodevices made of 10 nm thick silicon nanowires, from 10 to 100 nm long, sandwiched between two bulk reservoirs. We find that thermal transport in devices differs significantly from that of suspended extended nanowires, due to phonon scattering at the contact interfaces. We show that thermal conductance and the phonon transport regime can be tuned from ballistic to diffusive by varying the surface roughness of the nanowires and their length. In devices containing short crystalline wires, phonon tunneling occurs and enhances the conductance beyond that of single contacts. read less NOT USED (low confidence) N. Liao, W. Xue, P. Yang, and M. Zhang, “Tensile deformation induced structural rearrangement in amorphous silicon nitride,” Journal of Structural Chemistry. 2012. link Times cited: 2 NOT USED (low confidence) X. Han and Y. Gan, “Analysis the microscopic solid‐based wear process in the chemical mechanical planarization,” Surface and Interface Analysis. 2012. link Times cited: 4 Abstract: Chemical mechanical planarization (CMP), being the important… read moreAbstract: Chemical mechanical planarization (CMP), being the important technique of realizing the surface planarization, has already been widely applied in the microelectronic and computer industry. The abrasive size employed in the CMP, far less than that employed in the conventional grinding and material removal during CMP, is on the order of atoms or clusters of atoms and molecules. Classical continuum mechanics cannot give a reasonable explanation about the phenomenon in the CMP. Large‐scale classical molecular dynamics simulation of tribology interaction among nanoparticles and materials surface has been carried out to investigate the physical essence of surface planarization. The results show that simultaneous impact of several abrasive particles or the repeated impact of abrasive particles leads to material failure. For individual asperity contact in the CMP, non‐obvious Archard adhesive wear or abrasive wear is observed. The contact area is not entirely dependent upon the external pressure but also closely related to the relative position because of lateral motion between the particles and the substrate. The results also justify that no single wear mechanism dominates all operating conditions; different wear mechanisms operate with their relative importance changing as the sliding conditions change. As the slurry particles slide relative to the wafer surface, the atomic groups experience three stages, namely, interlock, elastic–plastic deformation and finally slip process; the surface planarization is mainly accomplished in the last two stages. Copyright © 2011 John Wiley & Sons, Ltd. read less NOT USED (low confidence) E. Bellido and J. Seminario, “Graphene-Based Vibronic Devices,” Journal of Physical Chemistry C. 2012. link Times cited: 14 Abstract: Molecular dynamic simulations are used to model the vibratio… read moreAbstract: Molecular dynamic simulations are used to model the vibrational bending modes of graphene ribbons of several sizes to calculate frequencies of the ribbons and determine the relationship between the size of the ribbon and their corresponding resonance frequencies. These ribbons can be utilized to fabricate several types of vibronic devices such as NEMS, sensors, terahertz generators, and devices for encoding, transferring, and processing information. The interaction of a graphene vibronic device with water and isopropyl alcohol molecules demonstrates that this device can be used as a very sensitive vibronic molecular sensor that is able to distinguish the chemical nature of the sensed molecule. The electrical properties of the graphene vibronic devices are also calculated for two cases, armchair and zigzag border. The zigzag border demonstrated in this work has the potential to generate THz electrical signals. read less NOT USED (low confidence) H. Gao, K. Zhang, G. Liu, H. Sun, and Y. Tang, “The Simulation Study of Si3N4 Ceramics Nano-Cutting Process,” Advanced Materials Research. 2012. link Times cited: 1 Abstract: Silicon nitride nanoscale cutting model was established by m… read moreAbstract: Silicon nitride nanoscale cutting model was established by molecular dynamics simulation, and interactions force between atoms of work-piece was calculated by Tersoff potential function. Through the three-dimensional simulation of silicon nitride nanocutting process, the changes of cutting force, kinetic energy and potential energy in the nanoscale cutting process, and the effects of cutting thickness and cutting speed on the entire cutting process were analyzed. The results showed that the kinetic energy, potential energy and cuting force increased along with the cutting thickness increasing, both kinetic energy and potential energy decreased with cutting speed increasing. read less NOT USED (low confidence) R. Ansari and S. Sahmani, “Small scale effect on vibrational response of single-walled carbon nanotubes with different boundary conditions based on nonlocal beam models,” Communications in Nonlinear Science and Numerical Simulation. 2012. link Times cited: 180 NOT USED (low confidence) K.-sub Kim, H. Hwang, and J. Kang, “Molecular dynamics study on resonance frequency shifts due to linear density of nanoclusters encapsulated in carbon nanotubes,” Physica E-low-dimensional Systems & Nanostructures. 2012. link Times cited: 10 NOT USED (low confidence) J. Adhikari, “Design of Compound Semiconductor Alloys Using Molecular Simulations.” 2012. link Times cited: 0 NOT USED (low confidence) N. Silvestre, B. Faria, and J. Lopes, “A molecular dynamics study on the thickness and post-critical strength of carbon nanotubes,” Composite Structures. 2012. link Times cited: 33 NOT USED (low confidence) S. Satake, S. Momota, A. Fukushige, S. Yamashina, M. Shibahara, and J. Taniguchi, “Molecular dynamics simulation of surface deformation via Ar+ ion collision process,” Nuclear Instruments & Methods in Physics Research Section B-beam Interactions With Materials and Atoms. 2012. link Times cited: 4 NOT USED (low confidence) H. Whitlow and S. Nakagawa, “Ordering effects in extreme high-resolution depth profiling with MeV ion beams,” Nuclear Instruments & Methods in Physics Research Section B-beam Interactions With Materials and Atoms. 2012. link Times cited: 0 NOT USED (low confidence) C. Hou and W. Ge, “A NOVEL MODE AND ITS VERIFICATION OF PARALLEL MOLECULAR DYNAMICS SIMULATION WITH THE COUPLING OF GPU AND CPU,” International Journal of Modern Physics C. 2012. link Times cited: 4 Abstract: Graphics processing unit (GPU) is becoming a powerful comput… read moreAbstract: Graphics processing unit (GPU) is becoming a powerful computational tool in scientific and engineering fields. In this paper, for the purpose of the full employment of computing capability, a novel mode for parallel molecular dynamics (MD) simulation is presented and implemented on basis of multiple GPUs and hybrids with central processing units (CPUs). Taking into account the interactions between CPUs, GPUs, and the threads on GPU in a multi-scale and multilevel computational architecture, several cases, such as polycrystalline silicon and heat transfer on the surface of silicon crystals, are provided and taken as model systems to verify the feasibility and validity of the mode. Furthermore, the mode can be extended to MD simulation of other areas such as biology, chemistry and so forth. read less NOT USED (low confidence) K. Samadikhah, R. Larsson, F. Bazooyar, and K. Bolton, “Continuum-molecular modelling of graphene,” Computational Materials Science. 2012. link Times cited: 13 NOT USED (low confidence) A. Burenkov, M. Sekowski, V. Belko, and H. Ryssel, “Angular distributions of sputtered silicon at grazing gallium ion beam incidence,” Nuclear Instruments & Methods in Physics Research Section B-beam Interactions With Materials and Atoms. 2012. link Times cited: 7 NOT USED (low confidence) A. Kinaci, J. Haskins, and T. Çagin, “On calculation of thermal conductivity from Einstein relation in equilibrium molecular dynamics.,” The Journal of chemical physics. 2012. link Times cited: 59 Abstract: In equilibrium molecular dynamics, Einstein relation can be … read moreAbstract: In equilibrium molecular dynamics, Einstein relation can be used to calculate the thermal conductivity. This method is equivalent to Green-Kubo relation and it does not require a derivation of an analytical form for the heat current. However, it is not as commonly used as Green-Kubo relationship. Its wide use is hindered by the lack of a proper definition for integrated heat current (energy moment) under periodic boundary conditions. In this paper, we developed an appropriate definition for integrated heat current to calculate thermal conductivity of solids under periodic conditions. We applied this method to solid argon and silicon based systems; compared and contrasted with the Green-Kubo approach. read less NOT USED (low confidence) Y. Long, Y. Liu, F. Nie, and J. Chen, “Theoretical study of breaking and slipping processes for HMX/graphite interface,” Applied Surface Science. 2012. link Times cited: 11 NOT USED (low confidence) L.-H. Yao, L. Yonggang, N. Fude, and C. Jun, “Force-Field Derivation and Atomistic Simulation of HMX/Graphite Interface and Polycrystal Systems,” Communications in Theoretical Physics. 2012. link Times cited: 11 Abstract: Interface is the key issue to understand the performance of … read moreAbstract: Interface is the key issue to understand the performance of composite materials. In this work, we study the interface between octahydro-1,3,5,7-tetranitro-1,3,5,7-tetrazocine (HMX) and graphite, try to find out its contribution to mixture explosives. The work starts from the force-field derivation. We get ab initio based pair potentials across the interface, and then use them to study the interface structural and mechanical properties. A series of large scale molecular dynamics simulations are performed. The structure evolution, energy variation and elastic/plastic transformation of interface and polycrystal systems are calculated. The desensitizing mechanism of graphite to HMX is discussed. read less NOT USED (low confidence) S. Li, J. Marshall, G. Liu, and Q. Yao, “Adhesive particulate flow: The discrete-element method and its application in energy and environmental engineering,” Progress in Energy and Combustion Science. 2011. link Times cited: 210 NOT USED (low confidence) E. Tadmor and R. E. Miller, “Modeling Materials: Continuum, Atomistic and Multiscale Techniques.” 2011. link Times cited: 395 Abstract: 1. Introduction Part I. Continuum Mechanics and Thermodynami… read moreAbstract: 1. Introduction Part I. Continuum Mechanics and Thermodynamics: 2. Essential continuum mechanics and thermodynamics Part II. Atomistics: 3. Lattices and crystal structures 4. Quantum mechanics of materials 5. Empirical atomistic models of materials 6. Molecular statics Part III. Atomistic Foundations of Continuum Concepts: 7. Classical equilibrium statistical mechanics 8. Microscopic expressions for continuum fields 9. Molecular dynamics Part IV. Multiscale Methods: 10. What is multiscale modeling? 11. Atomistic constitutive relations for multilattice crystals 12. Atomistic/continuum coupling: static methods 13. Atomistic/continuum coupling: finite temperature and dynamics Appendix References Index. read less NOT USED (low confidence) D. Li and Z. Wang, “TENSILE BEHAVIOR OF AMORPHOUS LAYER COATED SILICON CARBIDE NANOWIRES: AN ATOMIC SIMULATION,” Modern Physics Letters B. 2011. link Times cited: 1 Abstract: The tensile behavior of amorphous layer coated SiC nanowires… read moreAbstract: The tensile behavior of amorphous layer coated SiC nanowires was investigated using molecular dynamics with Tersoff potential at room temperature. Simulation results show that the amorphous layer coating leads to the decrease of the critical stress and Young's modulus, but does not affect the fracture mode of nanowires with large diameter and thin coating layer. The decrease of critical stress and Young's modulus can be attributed to the weakening of the Si–C bonds in the amorphous coating layers. read less NOT USED (low confidence) B. Faria, N. Silvestre, and J. Lopes, “Interaction diagrams for carbon nanotubes under combined shortening–twisting,” Composites Science and Technology. 2011. link Times cited: 16 NOT USED (low confidence) G. Zhang and H. Zhang, “Thermal conduction and rectification in few-layer graphene Y junctions.,” Nanoscale. 2011. link Times cited: 114 Abstract: By using molecular dynamics simulations, we have studied hea… read moreAbstract: By using molecular dynamics simulations, we have studied heat flux in graphene Y junctions with lengths of 16.7 nm. It is found that the heat flux runs preferentially from the branches to the stem, which demonstrates an obvious thermal rectification effect in these asymmetric graphene ribbons. More interesting, compared to single-layer graphene Y junctions, a larger rectification ratio can be achieved in double-layer structures, due to the presence of layer-layer interactions. Combined with the availability of high quality few-layer graphene materials, our results shed light on heat conduction in graphene nanoribbons and may open up few-layer graphene applications in thermal management of nano electronics. read less NOT USED (low confidence) A. Liu, K. W. Wang, and C. Bakis, “Effect of functionalization of single-wall carbon nanotubes (SWNTs) on the damping characteristics of SWNT-based epoxy composites via multiscale analysis,” Composites Part A-applied Science and Manufacturing. 2011. link Times cited: 36 NOT USED (low confidence) H. Guo, “Study on Nanometric Machining Mechanism of Monocrystalline Silicon by Molecular Dynamics,” Advanced Materials Research. 2011. link Times cited: 0 Abstract: A three-dimensional model of molecular dynamics (MD) was emp… read moreAbstract: A three-dimensional model of molecular dynamics (MD) was employed to study the nanometric cutting mechanism of monocrystalline silicon. The model included the utilization of the Morse potential function to simulate the interatomic force between the workpiece and the tool, and the Tersoff potential function between silicon atoms. Amorphous phase transformation and chip volume change are observed by analyses of the snapshots of the MD simulation of the nanometric cutting process, energy and cutting forces. Dislocations and elastic recovery in the deformed region around the tool do not appear. Cutting forces initiate the amorphous phase transformation, and thrust forces play an important role in driving the further transformation development. Nanometric cutting mechanism of monocrystalline silicon is not the plastic deformation involving the generation and propagation of dislocations, but deformation via amorphous phase transformation. read less NOT USED (low confidence) M. Z. Hossain, “Semiconducting graphene nanoribbon retains band gap on amorphous or crystalline SiO2,” Applied Physics Letters. 2011. link Times cited: 1 Abstract: Electronic properties of a semiconducting armchair graphene … read moreAbstract: Electronic properties of a semiconducting armchair graphene nanoribbon on SiO_2 are examined using first-principles calculations and taking into account the van der Waals interaction. Unlike semiconducting carbon nanotubes, which exhibit variations in band gap on SiO_2, the nanoribbon is
found to retain its band gap on SiO_2, regardless of the separation distance or the dielectric’s surface type—crystalline or amorphous. The interfacial interaction leads to electron-transfer from the nanoribbon to the dielectric. Moreover, for crystalline SiO_2, the quantity of electron-transfer and the binding energy depend strongly on the type of surface termination and weakly on the binding
sites. read less NOT USED (low confidence) D. Selli, I. Baburin, R. Martovn’ak, and S. Leoni, “Superhard s p3 carbon allotropes with odd and even ring topologies,” Physical Review B. 2011. link Times cited: 79 Abstract: Four $s{p}^{3}$ carbon allotropes with six, eight, and 16 at… read moreAbstract: Four $s{p}^{3}$ carbon allotropes with six, eight, and 16 atoms per primitive cell have been derived using a combination of metadynamics simulations and topological scan. A chiral orthorhombic phase $o$C16 ($C{222}_{1}$) was found to be harder than monoclinic M-carbon and shows excellent stability in the high-pressure range. A second orthorhombic phase of $Cmmm$ symmetry, by $\ensuremath{\sim}$0.028 eV/atom energetically lower than W-carbon, can be formed from graphite at $\ensuremath{\sim}$9 GPa. In general, the mechanical response under pressure was found to depend on the structure topology, which reflects the way rings are formed from an initial graphene layer stacking. read less NOT USED (low confidence) A. Zolfaghari, P. Pourhossein, and H. Jooya, “The effect of temperature and topological defects on H2 adsorption on carbon nanotubes,” International Journal of Hydrogen Energy. 2011. link Times cited: 10 NOT USED (low confidence) X. Han, “Analysis the physical essence of microscopic fluid-based wear process in the chemical mechanical planarization process,” Journal of Applied Physics. 2011. link Times cited: 5 Abstract: Chemical mechanical planarization (CMP) has become the proce… read moreAbstract: Chemical mechanical planarization (CMP) has become the process of choice for surface global planarization for materials surfaces in the fabrication of advanced multilevel integrated circuits (ICs) in microelectronic industry. The surface planarization in the CMP is mainly realized by the tribology behavior of nanoparticles. The suspending abrasive particles impinge on the surface at some velocity and angle thus imparting energy to the surface, resulting in strain, weakened bonds, and eventually material removal. Large-scale classical molecular dynamic (MD) simulation of interaction among nanoparticles and solid surface has been carried out to investigate the physical essence of fluid-based surface planarization process. The investigation shows that the plastic deformation plays an important role in this nanoscale wear process while the contribution of dislocations to the yield stress becomes insignificant. The depth of wear is gradually decreased which makes the fluid-based wear cannot realize the global ... read less NOT USED (low confidence) A. Setoodeh, H. Attariani, and M. Jahanshahi, “Mechanical Properties of Silicon-Germanium Nanotubes under Tensile and Compressive Loadings,” Journal of Nano Research. 2011. link Times cited: 12 Abstract: The mechanical response of single-walled zigzag silicon-germ… read moreAbstract: The mechanical response of single-walled zigzag silicon-germanium nanotubes (SiGeNTs) under tensile and compressive loadings is modeled via atomistic simulation method. The inter-atomic forces are described using the Tersoff's empirical bond-order potential. Initially, the comparative simulations of the bond lengths are presented and quite accurate behavior of the model is demonstrated. Afterwards, the results of the total strain energy are used to establish an expression for evaluating Young's modulus of the nanotubes. Since different choices of wall thickness significantly affect the calculation of Young's modulus, the effective modulus of elasticity is introduced. This procedure provides an accurate means for predicting the elastic modulus of the nanotubes. Numerical simulations were also performed to investigate the buckling behavior of SiGeNTs. Dependence of the critical buckling load on diameter and length of the nanotubes is shown. Finally, the effect of temperature on the axial compressive load of SiGeNTs is also discussed. read less NOT USED (low confidence) R. Ansari, H. Rouhi, and S. Sahmani, “Calibration of the analytical nonlocal shell model for vibrations of double-walled carbon nanotubes with arbitrary boundary conditions using molecular dynamics,” International Journal of Mechanical Sciences. 2011. link Times cited: 174 NOT USED (low confidence) Y. He, D. Donadio, and G. Galli, “Morphology and temperature dependence of the thermal conductivity of nanoporous SiGe.,” Nano letters. 2011. link Times cited: 50 Abstract: Using molecular dynamics simulations, we show that the therm… read moreAbstract: Using molecular dynamics simulations, we show that the thermal conductivity (κ) of Si(0.5)Ge(0.5) can be reduced by more than one order of magnitude by etching nanometer-sized holes in the material, and it becomes almost constant as a function of temperature between 300 and 1100 K for samples with 1 nm wide pores. In nanoporous SiGe, thermal conduction is largely determined by mass disorder and boundary scattering, and thus the dependence of κ on pore distance and on structural, atomistic disorder is much weaker than in the case of nanoporous Si. This indicates that one may minimize κ of the alloy with less stringent morphological constraints than for pure Si. read less NOT USED (low confidence) C. Sevik, A. Kinaci, J. Haskins, and T. Çagin, “Characterization of thermal transport in low-dimensional boron nitride nanostructures,” Physical Review B. 2011. link Times cited: 245 Abstract: Recent advances in the synthesis of hexagonal boron nitride … read moreAbstract: Recent advances in the synthesis of hexagonal boron nitride (BN) based nanostructures, similar to graphene, graphene nanoribbons, and nanotubes, have attracted significant interest into characterization of these materials. While electronic and optical properties of BN-based materials have been widely studied, the thermal transport has not been thoroughly investigated. In this paper, the thermal transport properties of these BN nanostructures are systematically studied using equilibrium molecular dynamics with a Tersoff-type empirical interatomic potential which is re-parametrized to represent experimental structure and phonon dispersion of two-dimensional hexagonal BN. Our simulations show that BN nanostructures have considerably high thermal conductivities but are still quite lower than carbon-based counterparts. Qualitatively, however, the thermal conductivity of carbon and BN nanoribbons display similar behavior with respect to the variation of width and edge structure (zigzag and armchair). Additionally, thermal conductivities of (10,10) and (10,0) nanotubes, both carbon and BN, are found to have very weak dependence on their chirality. read less NOT USED (low confidence) G. V. Kornich, G. Betz, V. G. Kornich, V. Shulga, and O. Yermolenko, “Synergism in sputtering of copper nanoclusters on graphite substrate at low energy Cu2 bombardment,” Nuclear Instruments & Methods in Physics Research Section B-beam Interactions With Materials and Atoms. 2011. link Times cited: 5 NOT USED (low confidence) G. Balasubramanian and I. Puri, “Heat conduction across a solid-solid interface: Understanding nanoscale interfacial effects on thermal resistance,” Applied Physics Letters. 2011. link Times cited: 76 Abstract: Phonons scatter and travel ballistically in systems smaller … read moreAbstract: Phonons scatter and travel ballistically in systems smaller than the phonon mean free path. At larger lengths, the transport is instead predominantly diffusive. We employ molecular dynamics simulations to describe the length dependence of the thermal conductivity. The simulations show that the interfacial thermal resistance Rk for a Si-Ge superlattice is inversely proportional to its length, but reaches a constant value as the system dimension becomes larger than the phonon mean free path. This nanoscale effect is incorporated into an accurate continuum model by treating the interface as a distinct material with an effective thermal resistance equal to Rk. read less NOT USED (low confidence) J. Yoon and H. Hwang, “Molecular dynamics modeling and simulations of a single-walled carbon-nanotube-resonator encapsulating a finite nanoparticle,” Computational Materials Science. 2011. link Times cited: 16 NOT USED (low confidence) S.-K. Chien, Y.-T. Yang, and C.-K. Chen, “The effects of vacancy defects and nitrogen doping on the thermal conductivity of armchair (10,10) single-wall carbon nanotubes,” Solid State Communications. 2011. link Times cited: 17 NOT USED (low confidence) T. C. Theodosiou and D. Saravanos, “Numerical Simulations Using a Molecular Mechanics-based Finite Element Approach: Application on Boron-Nitride Armchair Nanotubes,” International Journal for Computational Methods in Engineering Science and Mechanics. 2011. link Times cited: 10 Abstract: Boron-nitride nanotubes can be thought of as rolled sheets o… read moreAbstract: Boron-nitride nanotubes can be thought of as rolled sheets of plane hexagonal boron-nitride. In this paper a computationally efficient modeling approach is pursued. The honeycomb-like structure of the lattice is exploited and a special finite element is developed based on this hexagonal pattern. The internal energy is calculated using semi-empirical molecular mechanics functions and energy minimization algorithms are applied in order to obtain the equilibrium state under various loading conditions. Results are found to be in agreement with data found in the open literature. The introduced modeling approach provides a computationally efficient way to analyze nanotubes without the need of large-scale simulations, while it does not require lattice periodicity and structural perfection. read less NOT USED (low confidence) V. Bekenev, V. Kartuzov, and Y. Gogotsi, “Single-Crystal SiC Nanotubes: Molecular-Dynamic Modeling of Structure and Thermal Behavior.” 2011. link Times cited: 0 NOT USED (low confidence) V. Shevchenko, Y. Gogotsi, and E. Kartuzov, “Vibrational Spectrum of a Diamond‐Like Film on SiC Substrate.” 2011. link Times cited: 0 NOT USED (low confidence) S. Haijun, “Thermal-stability and compressive properties of one boron nitride nanotube embedded in another carbon tube,” Micro & Nano Letters. 2011. link Times cited: 3 Abstract: The melting and axial compression of one (5, 5) single-walle… read moreAbstract: The melting and axial compression of one (5, 5) single-walled boron nitride (BN) nanotube, as well as the (5, 5) BN tube embedded in one (10, 10) carbon nanotube, were simulated by molecular dynamics method. According to the calculated results, their differences in thermal-stability and compressive properties were discussed. It is shown that (i) the single-walled BN nanotube melts at about 4600 K, and the BN tube restricted in the carbon tube basically holds its configuration even at the high temperature of 5000 K; (ii) the restricted BN tube has much better anti-compression capability than the single-walled BN nanotube. read less NOT USED (low confidence) S. Zhang et al., “Voronoi Structural Evolution of Bulk Silicon upon Melting,” Chinese Physics Letters. 2011. link Times cited: 2 Abstract: The Voronoi structural evolution of silicon upon melting is … read moreAbstract: The Voronoi structural evolution of silicon upon melting is investigated using a molecular dynamics simulation. At temperatures below the melting point, the solid state system is identified to have a four-fold coordination structure 〈4,0,0,0〉. As the temperature increases, the five-fold coordination 〈2,3,0,0〉 and six-fold coordination structures 〈2,2,2,0〉 and 〈0,6,0,0〉 are observed. This is explained in terms of increasing atomic displacement due to thermal motion and the trapping of the moving atoms by others. At temperatures above the melting point, nearly all of the four-fold coordination structures grows into multiple-fold coordination ones. read less NOT USED (low confidence) K. Mylvaganam and L. Zhang, “Theoretical Analysis of Nanotube Functionalization and Polymer Grafting.” 2011. link Times cited: 0 NOT USED (low confidence) I. Y. Gotlib, A. K. Ivanov-Schitz, I. Murin, A. Petrov, and R. Zakalyukin, “Computer simulation of ionic transport in silver iodide within carbon nanotubes,” Solid State Ionics. 2011. link Times cited: 9 NOT USED (low confidence) Y. He, D. Donadio, and G. Galli, “Heat transport in amorphous silicon: Interplay between morphology and disorder,” Applied Physics Letters. 2011. link Times cited: 102 Abstract: We present a theoretical study of the thermal conductivity (… read moreAbstract: We present a theoretical study of the thermal conductivity (κ) of amorphous silicon (a-Si) based on molecular and lattice dynamics. We find that the majority of heat carriers are quasi-stationary modes; however the small proportion (≃3%) of propagating vibrations contributes to about half of the value of κ. We show that in bulk samples the mean free path of several long-wavelength modes is on the order of microns; this value may be substantially decreased either in thin films or in systems with etched holes, resulting in a smaller thermal conductivity. Our results provide a unified explanation of several experiments and show that kinetic theory cannot be applied to describe thermal transport in a-Si at room temperature. read less NOT USED (low confidence) V. Tomar and M. Gan, “Temperature dependent nanomechanics of Si–C–N nanocomposites with an account of particle clustering and grain boundaries,” International Journal of Hydrogen Energy. 2011. link Times cited: 11 NOT USED (low confidence) D. Bai, “Size, Morphology and Temperature Dependence of the Thermal Conductivity of Single-Walled Silicon Carbide Nanotubes,” Fullerenes, Nanotubes and Carbon Nanostructures. 2011. link Times cited: 11 Abstract: The thermal conductivity of single-walled silicon carbide na… read moreAbstract: The thermal conductivity of single-walled silicon carbide nanotubes (SW-SiCNTs) has been investigated by molecular dynamics (MD) simulation using the many-body Tersoff potential. To validate the reliability of the simulations code, the following measures have been taken: The calculated potential energies of SW-SiCNTs and the calculated thermal conductivities of single-walled carbon nanotubes (SWCNTs) are, respectively, compared with available data, and both comparisons are in good agreement. To investigate the size (tube length and diameter), morphology (chirality and the atom arrangement) and temperature dependence of the thermal conductivity of SW-SiCNTs, the thermal conductivities of SW-SiCNTs with different sizes, morphologies and temperatures, are calculated and compared with each other. It is found that (1) as the temperature increases, the thermal conductivity decreases at different rate, which depends on the tube morphology; (2) as long as the length increases, the thermal conductivity increases correspondingly; (3) the thermal conductivity depends on the tube diameter and exhibits a peaking behavior as a function of diameter; (4) atom arrangement strongly affects the thermal conductivity not only in quantity but also in the extent of dependence on chirality; and (5) the thermal conductivity is dependent on the chirality of nanotube with different extent. read less NOT USED (low confidence) J. Kang, K.-sub Kim, and H. Hwang, “Molecular dynamics study on nanotube-resonators with mass migration applicable to both frequency-tuner and data-storage-media,” Computational Materials Science. 2011. link Times cited: 18 NOT USED (low confidence) R. Ansari, S. Sahmani, and H. Rouhi, “Rayleigh–Ritz axial buckling analysis of single-walled carbon nanotubes with different boundary conditions,” Physics Letters A. 2011. link Times cited: 113 NOT USED (low confidence) K. Kleiner et al., “Multiscale Modeling of Au-Island Ripening on Au(100),” Advances in Physical Chemistry. 2011. link Times cited: 11 Abstract: We describe a multiscale modeling hierarchy for the particul… read moreAbstract: We describe a multiscale modeling hierarchy for the particular case of Au-island ripening on Au(100). Starting at the microscopic scale, density functional theory was used to investigate a limited number of self-diffusion processes on perfect and imperfect Au(100) surfaces. The obtained structural and energetic information served as basis for optimizing a reactive forcefield (here ReaxFF), which afterwards was used to address the mesoscopic scale. Reactive force field simulations were performed to investigate more diffusion possibilities at a lower computational cost but with similar accuracy. Finally, we reached the macroscale by means of kinetic Monte Carlo (kMC) simulations. The reaction rates for the reaction process database used in the kMC simulations were generated using the reactive force field. Using this strategy, we simulated nucleation, aggregation, and fluctuation processes for monoatomic high islands on Au(100) and modeled their equilibrium shape structures. Finally, by calculating the step line tension at different temperatures, we were able to make a direct comparison with available experimental data. read less NOT USED (low confidence) C.-ying Wang, Z. Wang, and Q. Meng, “Comparative study of the empirical interatomic potentials and density-functional simulations of divacancy and hexavacancy in silicon,” Physica B-condensed Matter. 2011. link Times cited: 3 NOT USED (low confidence) X. Han and Y. Gan, “Analysis the complex interaction among flexible nanoparticles and materials surface in the mechanical polishing process,” Applied Surface Science. 2011. link Times cited: 12 NOT USED (low confidence) J. Rabier and L. Pizzagalli, “Dislocation dipole annihilation in diamond and silicon,” Journal of Physics: Conference Series. 2011. link Times cited: 5 Abstract: The mechanism of dislocation dipole annihilation has been in… read moreAbstract: The mechanism of dislocation dipole annihilation has been investigated in C and Si using atomistic calculations with the aim of studying their annihilation by-products. It is shown, in C as well as in Si, that dipole annihilation yields debris that can be depicted as a cluster of vacancies, or alternately by two internal free surfaces. These defects have no strain field and can hardly be seen using usual TEM techniques. This suggests that the brown colouration of diamond could be due to microstructures resulting from deformation mechanisms associated with dipole formation and their annihilation rather than to a climb mechanism and vacancy aggregation. In silicon where a number of dipoles have been evidenced by TEM when dislocation trails are found, such debris could be the missing link responsible for the observation of strong chemical reactivity and electrical activity in the wake of moving dislocations. read less NOT USED (low confidence) A. Harjunmaa, K. Nordlund, and A. Stukowski, “Structure of Si/Ge nanoclusters: Kinetics and thermodynamics,” Computational Materials Science. 2011. link Times cited: 4 NOT USED (low confidence) L. Pizzagalli, J. Godet, J. Guénolé, and S. Brochard, “Dislocation cores in silicon: new aspects from numerical simulations,” Journal of Physics: Conference Series. 2011. link Times cited: 9 Abstract: Recent theoretical investigations of the properties of dislo… read moreAbstract: Recent theoretical investigations of the properties of dislocation cores in silicon are reviewed. New results, obtained from numerical simulations for the non-dissociated screw and 60° dislocations, are presented and discussed in relation with experiments. read less NOT USED (low confidence) J. Kang, K.-sub Kim, J. Park, and H. Hwang, “Study on tunable resonator using a cantilevered carbon nanotube encapsulating a copper nanocluster,” Physica E-low-dimensional Systems & Nanostructures. 2011. link Times cited: 19 NOT USED (low confidence) A. Adnan et al., “Atomistic simulation and measurement of pH dependent cancer therapeutic interactions with nanodiamond carrier.,” Molecular pharmaceutics. 2011. link Times cited: 112 Abstract: In this work, we have combined constant-pH molecular dynamic… read moreAbstract: In this work, we have combined constant-pH molecular dynamics simulations and experiments to provide a quantitative analysis of pH dependent interactions between doxorubicin hydrochloride (DOX) cancer therapeutic and faceted nanodiamond (ND) nanoparticle carriers. Our study suggests that when a mixture of faceted ND and DOX is dissolved in a solvent, the pH of this solvent plays a controlling role in the adsorption of DOX molecules on the ND. We find that the binding of DOX molecules on ND occurs only at high pH and requires at least ∼10% of ND surface area to be fully titrated for binding to occur. As such, this study reveals important mechanistic insight underlying an ND-based pH-controlled therapeutic platform. read less NOT USED (low confidence) Q. Cao, W.-L. Wang, Y. D. Li, and C. S. Liu, “Correlations among residual multiparticle entropy, local atomic-level pressure, free volume and the phase-ordering rule in several liquids.,” The Journal of chemical physics. 2011. link Times cited: 9 Abstract: A modified Wang-Landau density-of-states sampling approach h… read moreAbstract: A modified Wang-Landau density-of-states sampling approach has been performed to calculate the excess entropy of liquid metals, Lennard-Jones (LJ) system and liquid Si under NVT conditions; and it is then the residual multiparticle entropy (S(RMPE)) is obtained by subtraction of the pair correlation entropy. The temperature dependence of S(RMPE) has been investigated along with the temperature dependence of the local atomic-level pressure and the pair correlation functions. Our results suggest that the temperature dependence of the pair correlation entropy is well described by T(-1) scaling while T(-0.4) scaling well describes the relationship between the excess entropy and temperature. For liquid metals and LJ system, the -S(RMPE) versus temperature curves show positive correlations and the -S(RMPE) of liquid Si is shown to have a negative correlation with temperature, the phase-ordering criterion (based on the S(RMPE)) for predicting freezing transition works in liquid metals and LJ but fails in liquid Si. The local atomic-level pressure scaled with the virial pressure (σ(al)/σ(av)) exhibits the much similar temperature dependence as -S(RMPE) for all studied systems, even though simple liquid metals and liquid Si exhibit opposite temperature dependence in both σ(al)/σ(av) and -S(RMPE). The further analysis shows that the competing properties of the two effects due to localization and free volume on the S(RMPE) exist in simple liquid metals and LJ system but disappear in liquid Si, which may be the critical reason of the failure of the phase-ordering criterion in liquid Si. read less NOT USED (low confidence) J.-T. Kim, J.-H. Lee, K.-H. Lee, and J.-H. Choi, “Ultra-High Frequency Characteristics of Double-Wall Carbon Nanotube Resonator with Different Length,” Journal of the Korea Society of Computer and Information. 2010. link Times cited: 0 Abstract: In this paper, we have investigated ultrahigh frequency nano… read moreAbstract: In this paper, we have investigated ultrahigh frequency nano-mechanical resonators, made of DWCNTs with various wall lengths, via classical molecular dynamics simulations. We have aimed our analysis on the frequency variations of these resonators with the DWCNT wall lengths. The results show that the variations can be well fitted by either the Pearson VII function when the resonant frequency of normalized by its maximum frequency is plotted as a function of the inner/outer wall length ratio L5/L10 for different values of the outer wall length L10, and the Gauss distribution function when the resonant frequency of normalized by its maximum frequency is plotted as a function of the outer/inner wall length ratio for different values of the inner wall length. read less NOT USED (low confidence) J. Fan, “Applications of Atomistic Simulation in Ceramics and Metals.” 2010. link Times cited: 0 NOT USED (low confidence) J. Kang and H. Hwang, “Molecular dynamics study on oscillation dynamics of a C60 fullerene encapsulated in a vibrating carbon-nanotube-resonator,” Computational Materials Science. 2010. link Times cited: 14 NOT USED (low confidence) J. Kang, O. Kwon, and H. Hwang, “A study on resonance frequency of cantilevered triple-walled carbon nanotube with short middle- and outer-walls,” Computational Materials Science. 2010. link Times cited: 7 NOT USED (low confidence) P. Agnihotri and S. Basu, “SINGLE-WALLED NANOTUBES AS KIRCHHOFF ELASTICAS,” International Journal of Applied Mechanics. 2010. link Times cited: 9 Abstract: Under compressive loads, single-walled carbon nanotubes (SWN… read moreAbstract: Under compressive loads, single-walled carbon nanotubes (SWNTs) are known to behave like cylindrical shells at small aspect ratios and undergo a shell to column transition at somewhat larger aspect ratios. At even larger aspect ratios SWNTs are capable of undergoing large elastic deformations without suffering localized plastic kinks. In this work, we show that a very long SWNT can be modeled as a Kirchhoff elastica with a small initial twist. The elastic properties of the nanotubes, required to model them as elastica, are obtained from MD simulations on short SWNTs. The total twist on particular straight nanotube depends on its length, diameter and chirality and though small, affects the post buckling deformation of long nanotubes significantly. The modeling of a long SWNT as a twisted elastica may be effectively used to search for their possible folded and coiled equilibrium configurations under various ambient conditions. read less NOT USED (low confidence) J. Im, B. Park, H.-Y. Shin, and J.-H. Kim, “Temperature Dependence on Elastic Constant of SiC Ceramics,” Journal of The Korean Ceramic Society. 2010. link Times cited: 3 Abstract: In this paper, we employed the classical molecular dynamics … read moreAbstract: In this paper, we employed the classical molecular dynamics simulations using Tersoff’s potential to calculate the elastic constants of the silicon carbide (SiC) crystal at high temperature. The elastic constants of the SiC crystal were calculated based on the stressstrain characteristics, which were drawn by the simulation using LAMMPS software. At the same time, the elastic constants of the SiC ceramics were measured at different temperatures by impulse excitation testing (IET) method. Based on the simulated stress-strain results, the SiC crystal showed the elastic deformation characteristics at the low temperature region, while a slight plastic deformation behavior was observed at high strain over 1,000℃ temperature. The elastic constants of the SiC crystal were changed from about 475 ㎬ to 425 ㎬ by increasing the temperature from RT to 1,250℃. When compared to the experimental values of the SiC ceramics, the simulation results, which are unable to obtain by experiments, are found to be very useful to predict the stress-strain behaviors and the elastic constant of the ceramics at high temperature. read less NOT USED (low confidence) R. Ansari, S. Sahmani, and B. Arash, “Nonlocal plate model for free vibrations of single-layered graphene sheets,” Physics Letters A. 2010. link Times cited: 433 NOT USED (low confidence) S. Hamaguchi, “Plasma-surface Interactions in Material Processing,” Journal of Physics: Conference Series. 2010. link Times cited: 5 Abstract: In plasma processes such as reactive ion etching and thin fi… read moreAbstract: In plasma processes such as reactive ion etching and thin film deposition for microelectronics device fabrication, atomic-level control of surface morphologies and compositions of processed materials has become increasingly important as the device sizes diminish to the nano-meter range. While various species such as ions, neutral radicals, electrons and photons simultaneously hit the material surface in a plasma, the plasma-surface interactions can be best understood if individual elementary processes such as interaction of specific species with the surface at specific incident energy are studied separately under well controlled conditions. In this article, a molecular dynamics (MD) simulation technique is reviewed as a means to analyse plasma-surface interactions in such a manner and some sample simulation results for polymer etching and diamond-like carbon (DLC) deposition are presented. read less NOT USED (low confidence) B. W. Park, H. Shin, J. Kim, and J. Im, “Molecular dynamic studies for elastic constant of SiC crystal at high temperature.” 2010. link Times cited: 0 Abstract: Simulation Center, Business Support Div., KICET, Seoul 153-8… read moreAbstract: Simulation Center, Business Support Div., KICET, Seoul 153-801, Korea(Received September 24, 2010)(Revised October 6, 2010)(Accepted October 8, 2010)Abstract Silicon carbide (SiC) ceramics are widely used in the application of high-temperature structural devices due totheir light weight as well as superior hardness, fracture toughness, and temperature stability. In this paper, we employedclassical molecular dynamics simulations using Tersoff’s potential to investigate the elastic constants of the SiC crystal athigh temperature. The stress-strain characteristics of the SiC crystal were calculated with the LAMMPS software and theelastic constants of the SiC crystal were analyzed. Based on the stress-strain analysis, the SiC crystal has shown the elasticdeformation characteristics at the low temperature region. But the slight plastic deformation behavior was shown as appliedthe high strain over 1,000 read less NOT USED (low confidence) M. Bernardi, M. Giulianini, and J. Grossman, “Self-assembly and its impact on interfacial charge transfer in carbon nanotube/P3HT solar cells.,” ACS nano. 2010. link Times cited: 92 Abstract: Charge transfer at the interface of conjugated polymer and n… read moreAbstract: Charge transfer at the interface of conjugated polymer and nanoscale inorganic acceptors is pivotal in determining the efficiency of excitonic solar cells. Despite intense efforts, carbon nanotube/polymer solar cells have resulted in disappointing efficiencies (<2%) due in large part to poor charge transfer at the interface. While the interfacial energy level alignment is clearly important, the self-assembly and the interface structure also play a major role in facilitating this charge transfer. To understand and control this effect to our advantage, we study the interface of commonly used conductive polymer poly-3-hexylthiophene (P3HT) and single-walled carbon nanotubes (SWNTs) with a combination of molecular dynamics simulations, absorption spectra experiments, and an analysis of charge transfer effects. Classical molecular dynamics simulations show that the P3HT wraps around the SWNTs in a number of different conformations, including helices, bundles, and more elongated conformations that maximize planar π-π stacking, in agreement with recent experimental observations. Snapshots from the MD simulations reveal that the carbon nanotubes play an important templating role of increasing the π-conjugation in the system, an effect deriving from the π-π stacking interaction at the interface and the 1-dimensional (1D) nature of the SWNTs, and independent of the SWNT chirality. We show how this increase in the system conjugation could largely improve the charge transfer in P3HT-SWNT type II heterojunctions and support our results with absorption spectra measurements of mixtures of carbon nanotubes and P3HT. These findings open possibilities for improved preparation of polymeric solar cells based on carbon nanotubes and on 1D nanomaterials in general. read less NOT USED (low confidence) S. Giordano, A. Mattoni, and L. Colombo, “Brittle Fracture: From Elasticity Theory to Atomistic Simulations,” Reviews in Computational Chemistry. 2010. link Times cited: 13 Abstract: Understanding the mechanical properties of materials with th… read moreAbstract: Understanding the mechanical properties of materials with theory traditionally has been done by using continuum methods, ranging from elastic theory (in both linear and nonlinear regimes), to plastic theory, and to fracture mechanics. The computational counterpart of continuum modeling is represented by finite element analysis. Continuum theories have been extremely successful, as proved by the tremendous achievements reached in structural design of buildings, ships, bridges, air-/space crafts, nuclear reactors, and so on. Overall this represents the core of theoretical and computational solid mechanics. In the last 20 years or so, the technological rush toward nano-sized systems has forced researchers to investigate mechanical phenomena at a length scale in which matter no longer can be considered as a continuum. This is the case, for instance, of investigating the crack-related features in a material displaying elastic or structural complexity (or, equivalently, inhomogeneity or disorder) at the nanoscale. This problem of atomic-scale granularity immediately seems to be prohibitive for (standard) solid mechanics. To better elaborate on this read less NOT USED (low confidence) L. Kondratenko, O. Mykhailenko, Y. Prylutskyy, T. Radchenko, and V. Tatarenko, “Nitrogenated Carbon Nanotubes: Methods of Fabrication, Properties, and Prospect of Application.” 2010. link Times cited: 1 NOT USED (low confidence) M. W. Cole et al., “Structural, electronic, optical and vibrational properties of nanoscale carbons and nanowires: a colloquial review,” Journal of Physics: Condensed Matter. 2010. link Times cited: 14 Abstract: This review addresses the field of nanoscience as viewed thr… read moreAbstract: This review addresses the field of nanoscience as viewed through the lens of the scientific career of Peter Eklund, thus with a special focus on nanocarbons and nanowires. Peter brought to his research an intense focus, imagination, tenacity, breadth and ingenuity rarely seen in modern science. His goal was to capture the essential physics of natural phenomena. This attitude also guides our writing: we focus on basic principles, without sacrificing accuracy, while hoping to convey an enthusiasm for the science commensurate with Peter’s. The term ‘colloquial review’ is intended to capture this style of presentation. The diverse phenomena of condensed matter physics involve electrons, phonons and the structures within which excitations reside. The ‘nano’ regime presents particularly interesting and challenging science. Finite size effects play a key role, exemplified by the discrete electronic and phonon spectra of C60 and other fullerenes. The beauty of such molecules (as well as nanotubes and graphene) is reflected by the theoretical principles that govern their behavior. As to the challenge, ‘nano’ requires special care in materials preparation and treatment, since the surface-to-volume ratio is so high; they also often present difficulties of acquiring an experimental signal, since the samples can be quite small. All of the atoms participate in the various phenomena, without any genuinely ‘bulk’ properties. Peter was a master of overcoming such challenges. The primary activity of Eklund’s research was to measure and understand the vibrations of atoms in carbon materials. Raman spectroscopy was very dear to Peter. He published several papers on the theory of phonons (Eklund et al 1995a Carbon 33 959–72, Eklund et al 1995b Thin Solid Films 257 211–32, Eklund et al 1992 J. Phys. Chem. Solids 53 1391–413, Dresselhaus and Eklund 2000 Adv. Phys. 49 705–814) and many more papers on measuring phonons (Pimenta et al 1998b Phys. Rev. B 58 16016–9, Rao et al 1997a Nature 338 257–9, Rao et al 1997b Phys. Rev. B 55 4766–73, Rao et al 1997c Science 275 187–91, Rao et al 1998 Thin Solid Films 331 141–7). His careful sample treatment and detailed Raman analysis contributed greatly to the elucidation of photochemical polymerization of solid C60 (Rao et al 1993b Science 259 955–7). He developed Raman spectroscopy as a standard tool for gauging the diameter of a single-walled carbon nanotube (Bandow et al 1998 Phys. Rev. Lett. 80 3779–82), distinguishing metallic versus semiconducting single-walled carbon nanotubes, (Pimenta et al 1998a J. Mater. Res. 13 2396–404) and measuring the number of graphene layers in a peeled flake of graphite (Gupta et al 2006 Nano Lett. 6 2667–73). For these and other ground breaking contributions to carbon science he received the Graffin Lecture award from the American Carbon Society in 2005, and the Japan Carbon Prize in 2008. As a material, graphite has come full circle. The 1970s renaissance in the science of graphite intercalation compounds paved the way for a later explosion in nanocarbon research by illuminating many beautiful fundamental phenomena, subsequently rediscovered in other forms of nanocarbon. In 1985, Smalley, Kroto, Curl, Heath and O’Brien discovered carbon cage molecules called fullerenes in the soot ablated from a rotating graphite target (Kroto et al 1985 Nature 318 162–3). At that time, Peter’s research was focused mainly on the oxide-based high-temperature superconductors. He switched to fullerene research soon after the discovery that an electric arc can prepare fullerenes in bulk quantities (Haufler et al 1990 J. Phys. Chem. 94 8634–6). Later fullerene research spawned nanotubes, and nanotubes spawned a newly exploding research effort on single-layer graphene. Graphene has hence evolved from an oversimplified model of graphite (Wallace 1947 Phys. Rev. 71 622–34) to a new member of the nanocarbon family exhibiting extraordinary electronic properties. Eklund’s career spans this 35-year odyssey. read less NOT USED (low confidence) J. Kang, K.-sub Kim, H. Hwang, and O. Kwon, “Molecular dynamics study of effects of intertube gap on frequency-controlled carbon-nanotube oscillators,” Physics Letters A. 2010. link Times cited: 28 NOT USED (low confidence) J. Kang and H. Hwang, “Modeling and simulation of frequency-changeable carbon-nanotube oscillators via molecular dynamics simulations,” 10th IEEE International Conference on Nanotechnology. 2010. link Times cited: 0 Abstract: We present a model of frequency-changeable carbon-nanotube (… read moreAbstract: We present a model of frequency-changeable carbon-nanotube (CNT) oscillator and its dynamic properties are investigated via classical molecular dynamics simulations. The operating frequency of the CNT oscillator can be changed by manipulating the intertube gap. The oscillations of the coretubes were found in two modes; the coretube oscillated between two outertubes or in only one outertube. When the gap is small and the kinetic energy of the coretube is high, the coretube oscillates between two outertubes. When the gap is large and the kinetic energy of the coretube is low, the coretube oscillates in only one outertube. The changes of the gap dominantly influenced the frequency rather than the changes of the initial velocities of the coretube. The bandwidths by intertube gap engineering can be enhanced more than the bandwidths achieved by initial velocity engineering by several tens of gigahertzs read less NOT USED (low confidence) Y. Katoh, L. Snead, T. Nozawa, S. Kondo, and J. Busby, “Thermophysical and mechanical properties of near-stoichiometric fiber CVI SiC/SiC composites after neutron irradiation at elevated temperatures,” Journal of Nuclear Materials. 2010. link Times cited: 113 NOT USED (low confidence) V. Tomar, M. Gan, and H.-sung Kim, “Atomistic analyses of the effect of temperature and morphology on mechanical strength of Si–C–N and Si–C–O nanocomposites,” Journal of The European Ceramic Society. 2010. link Times cited: 31 NOT USED (low confidence) V. Haxha and M. Migliorato, “Calculating strain using atomistic simulations: A review.” 2010. link Times cited: 0 Abstract: We present a short review of methods of evaluating of strain… read moreAbstract: We present a short review of methods of evaluating of strain from atomistic models in the context of linear elasticity. read less NOT USED (low confidence) P. Colombo, G. Mera, R. Riedel, and G. Sorarù, “Polymer‐Derived Ceramics: 40 Years of Research and Innovation in Advanced Ceramics,” Journal of the American Ceramic Society. 2010. link Times cited: 1404 Abstract: Preceramic polymers were proposed over 30 years ago as precu… read moreAbstract: Preceramic polymers were proposed over 30 years ago as precursors for the fabrication of mainly Si-based advanced ceramics, generally denoted as polymer-derived ceramics (PDCs). The polymer to ceramic transformation process enabled significant technological breakthroughs in ceramic science and technology, such as the development of ceramic fibers, coatings, or ceramics stable at ultrahigh temperatures (up to 2000°C) with respect to decomposition, crystallization, phase separation, and creep. In recent years, several important advances have been achieved such as the discovery of a variety of functional properties associated with PDCs. Moreover, novel insights into their structure at the nanoscale level have contributed to the fundamental understanding of the various useful and unique features of PDCs related to their high chemical durability or high creep resistance or semiconducting behavior. From the processing point of view, preceramic polymers have been used as reactive binders to produce technical ceramics, they have been manipulated to allow for the formation of ordered pores in the meso-range, they have been tested for joining advanced ceramic components, and have been processed into bulk or macroporous components. Consequently, possible fields of applications of PDCs have been extended significantly by the recent research and development activities. Several key engineering fields suitable for application of PDCs include high-temperature-resistant materials (energy materials, automotive, aerospace, etc.), hard materials, chemical engineering (catalyst support, food- and biotechnology, etc.), or functional materials in electrical engineering as well as in micro/nanoelectronics. The science and technological development of PDCs are highly interdisciplinary, at the forefront of micro- and nanoscience and technology, with expertise provided by chemists, physicists, mineralogists, and materials scientists, and engineers. Moreover, several specialized industries have already commercialized components based on PDCs, and the production and availability of the precursors used has dramatically increased over the past few years. In this feature article, we highlight the following scientific issues related to advanced PDCs research: (1) General synthesis procedures to produce silicon-based preceramic polymers.
(2) Special microstructural features of PDCs.
(3) Unusual materials properties of PDCs, that are related to their unique nanosized microstructure that makes preceramic polymers of great and topical interest to researchers across a wide spectrum of disciplines.
(4) Processing strategies to fabricate ceramic components from preceramic polymers.
(5) Discussion and presentation of several examples of possible real-life applications that take advantage of the special characteristics of preceramic polymers. Note: In the past, a wide range of specialized international symposia have been devoted to PDCs, in particular organized by the American Ceramic Society, the European Materials Society, and the Materials Research Society. Most of the reviews available on PDCs are either not up to date or deal with only a subset of preceramic polymers and ceramics (e.g., silazanes to produce SiCN-based ceramics). Thus, this review is focused on a large number of novel data and developments, and contains materials from the literature but also from sources that are not widely available. read less NOT USED (low confidence) Z. Ong and E. Pop, “Frequency and polarization dependence of thermal coupling between carbon nanotubes and SiO2,” Journal of Applied Physics. 2010. link Times cited: 38 Abstract: We study heat dissipation from a (10,10) carbon nanotube (CN… read moreAbstract: We study heat dissipation from a (10,10) carbon nanotube (CNT) to a SiO2 substrate using equilibrium and nonequilibrium classical molecular dynamics. The CNT-substrate thermal boundary conductance is computed both from the relaxation time of the CNT-substrate temperature difference, and from the time autocorrelation function of the interfacial heat flux at equilibrium (Green–Kubo relation). The power spectrum of interfacial heat flux fluctuation and the time evolution of the internal CNT energy distribution suggest that: (1) thermal coupling is dominated by long wavelength phonons between 0–10 THz, (2) high frequency (40–57 THz) CNT phonon modes are strongly coupled to sub-40 THz CNT phonon modes, and (3) inelastic scattering between the CNT phonons and substrate phonons contributes to interfacial thermal transport. We also find that the low frequency longitudinal acoustic and twisting acoustic modes do not transfer energy to the substrate as efficiently as the low frequency transverse optical mode. read less NOT USED (low confidence) E. Lampin, C. Priester, C. Krzeminski, and L. Magaud, “Graphene buffer layer on Si-terminated SiC studied with an empirical interatomic potential,” Journal of Applied Physics. 2010. link Times cited: 23 Abstract: The atomistic structure of the graphenebuffer layer on Si-te… read moreAbstract: The atomistic structure of the graphenebuffer layer on Si-terminated SiC is investigated using a modified version of the environment-dependent interatomic potential. The determination of the equilibrium state by the conjuguate gradients method suffers from a complex multiple-minima energy surface. The initial configuration is therefore modified to set the system in specific valleys of the energy surface. The solution of minimal energy forms a hexagonal pattern composed of stuck regions separated by unbonded rods that release the misfit with the SiC surface. The structure presents the experimental symmetries and a global agreement with an ab initio calculation. It is therefore expected that the interatomic potential could be used in classical molecular dynamics calculations to study the graphene growth. read less NOT USED (low confidence) A. Liu, K. W. Wang, and C. Bakis, “Multiscale Damping Model for Polymeric Composites Containing Carbon Nanotube Ropes,” Journal of Composite Materials. 2010. link Times cited: 28 Abstract: A novel multiscale model is developed for describing the dam… read moreAbstract: A novel multiscale model is developed for describing the damping characteristics of polymeric composites containing aligned or randomly oriented carbon nanotube (CNT) ropes. This is the first known model of damping behavior of CNT-based composites incorporating length scales from atomic to structural. The shear strengths at the inter-tube and tube—resin interfaces are calculated using molecular dynamics simulations of nanotube pull outs. The calculated shear strengths are then applied to a micro-mechanical damping model in which the composite is described as a three-phase system composed of a resin, a resin sheath acting as a shear transfer zone, and a CNT rope. The resin is modeled as a viscoelastic material using a three-element standard solid model. The concept of stick-slip motion is used to describe the load transfer behavior between carbon nanotubes in a rope as well as between nanotubes and the surrounding sheath. Energy dissipation from the viscoelastic polymer matrix and from the stick-slip motion contributes to the overall structural damping characteristics. This model is used to study the damping behavior of CNT/polymer composites under tension—tension and tension—compression cyclic loads. The effects of volume fraction and aspect ratio of the nanotube ropes on damping are illustrated and good insights are gained by analyzing the model. read less NOT USED (low confidence) J.-Y. Wu, H.-C. Wang, J.-S. Chen, K. Chen, and K. Ting, “Using Molecular Dynamics Simulation and Parallel Computing Technique of the Deposition of Diamond-Like Carbon Thin Films,” Methods and Tools of Parallel Programming Multicomputers. 2010. link Times cited: 0 NOT USED (low confidence) J. Kang et al., “Model schematics of carbon-nanotube-based-nanomechanical-tuner using piezoelectric strain,” Physica E-low-dimensional Systems & Nanostructures. 2010. link Times cited: 12 NOT USED (low confidence) V. Tomar, “Atomistic and Continuum Understanding of the Particle Clustering and Particle Size Effect on the Room and High Temperature Strength of SiC-Si 3 N 4 Nanocomposites.” 2010. link Times cited: 1 Abstract: Silicon carbide (SiC)-silicon nitride (Si3N4) nanocomposites… read moreAbstract: Silicon carbide (SiC)-silicon nitride (Si3N4) nanocomposites are one of the most important high temperature materials. Factors that affect the strength of the SiC-Si3N4 nanocomposites can include the second phase SiC particle placement and clustering along Si3N4 GBs, the SiC particle size, Si3N4 grain size, and Si3N4 matrix morphology. This work presents recent work by our group in analyzing the effect of morphological variations in second phase SiC particle placement and GB strength on the room temperature fracture strength of SiC-Si3N4 nanocomposites using continuum analyses based on a mesoscale (~50 nm) cohesive finite element method (CFEM) and using molecular dynamics (MD) based analyses at nanoscale (~15 nm). The analyses have revealed that high strength and relatively small sized SiC particles act as stress concentration sites in Si3N4 matrix leading to inter-granular Si3N4 matrix cracking as a dominant nanocomposite failure mode under dynamic loading. At high SiC volume fractions that peak at approximately 30%, the CFEM analyses have revealed that due to a significant number of nano-sized SiC particles being present in micro-sized Si3N4 matrix, the SiC particles invariantly fall in the wake regions of microcracks leading to significant increase in fracture resistance. This finding was mechanistically confirmed in the room temperature MD analyses that revealed that particle clustering along the GBs was more effective than particles being placed on GBs in increasing the nanocomposite mechanical strength. The temperature dependent deformation mechanism is found to be a trade-off between the stress concentration caused by SiC particles and Si3N4-Si3N4 GB sliding. The temperature increase tends to work in favor of GB sliding leading to softening of structures. However, microstructural strength increases with increase in temperature when GBs are absent. read less NOT USED (low confidence) S. Habibi, M. Farid, and M. Kadivar, “Continuum mechanics ability to predict the material response at atomic scale,” Computational Materials Science. 2010. link Times cited: 5 NOT USED (low confidence) Z. Wang, J. Li, F. Gao, and W. J. Weber, “Tensile and compressive mechanical behavior of twinned silicon carbide nanowires,” Acta Materialia. 2010. link Times cited: 39 NOT USED (low confidence) J. Brona, V. Cherepanov, K. Romanyuk, and B. Voigtländer, “Formation of pits during growth of Si/Ge nanostructures,” Surface Science. 2010. link Times cited: 0 NOT USED (low confidence) F. Pailloux, M. David, and L. Pizzagalli, “Quantitative HRTEM investigation of nanoplatelets,” Micron. 2010. link Times cited: 4 NOT USED (low confidence) K. Gärtner, “MD simulation of ion implantation damage in AlGaAs: II. Generation of point defects,” Nuclear Instruments & Methods in Physics Research Section B-beam Interactions With Materials and Atoms. 2010. link Times cited: 4 NOT USED (low confidence) K. Gärtner and T. Clauss, “MD simulation of ion implantation damage in AlGaAs: III. Defect accumulation and amorphization,” Nuclear Instruments & Methods in Physics Research Section B-beam Interactions With Materials and Atoms. 2010. link Times cited: 5 NOT USED (low confidence) L. Pelaz, L. Marqués, M. Aboy, P. López, and I. Santos, “Front-end process modeling in silicon,” The European Physical Journal B. 2009. link Times cited: 32 NOT USED (low confidence) H.-jun Shen, “Thermal-conductivity and tensile-properties of BN, SiC and Ge nanotubes,” Computational Materials Science. 2009. link Times cited: 42 NOT USED (low confidence) S. Satake, N. Inoue, S. Yamashina, M. Shibahara, and J. Taniguchi, “Surface deformation of ion collision process via molecular dynamics simulation.” 2009. link Times cited: 0 Abstract: Molecular dynamics simulations of Ga ion collision on a Si s… read moreAbstract: Molecular dynamics simulations of Ga ion collision on a Si surface using an optimized potential function were carried out for acceleration voltages of 1, 40, 100 keV for 36, 50, 100 Ga ions. A hillock structure was formed by the Ga ion impact. The height of the structure calculated by the simulations corresponded to experimental values. The sputtering yield was found to be proportional to the acceleration energy and for a high acceleration energy of 100 keV Si atoms deep within the impact surface were sputtered. read less NOT USED (low confidence) O. Okeke and J. Lowther, “Molecular dynamics of binary metal nitrides and ternary oxynitrides,” Physica B-condensed Matter. 2009. link Times cited: 5 NOT USED (low confidence) S. Ghasemi et al., “The energy landscape of silicon systems and its description by force fields, tight binding schemes, density functional methods and Quantum Monte Carlo methods,” arXiv: Computational Physics. 2009. link Times cited: 27 Abstract: The accuracy of the energy landscape of silicon systems obta… read moreAbstract: The accuracy of the energy landscape of silicon systems obtained from various density functional methods, a tight binding scheme and force fields is studied. Quantum Monte Carlo results serve as quasi exact reference values. In addition to the well known accuracy of DFT methods for geometric ground states and metastable configurations we find that DFT methods give a similar accuracy for transition states and thus a good overall description of the energy landscape. On the other hand, force fields give a very poor description of the landscape that are in most cases too rugged and contain many fake local minima and saddle points or ones that have the wrong height. read less NOT USED (low confidence) Z. X. Guo, D. Zhang, and X. Gong, “Thermal conductivity of graphene nanoribbons,” Applied Physics Letters. 2009. link Times cited: 375 Abstract: We have investigated the thermal conductivity of graphene na… read moreAbstract: We have investigated the thermal conductivity of graphene nanoribbons (GNRs) with different edge shapes as a function of length, width, and strain using nonequilibrium molecular dynamics method. The initial GNR for the functional variations has dimensions of 2×11 nm2. Strong length dependence of thermal conductivity is obtained, indicating high thermal conductivities of GNRs, which is consistent with the experimental results for graphene. A tensile/compressive uniaxial strain can remarkably decrease the thermal conductivity of GNR. read less NOT USED (low confidence) T. Ragab and C. Basaran, “A framework for stress computation in single-walled carbon nanotubes under uniaxial tension,” Computational Materials Science. 2009. link Times cited: 29 NOT USED (low confidence) L. Shen and Z. Chen, “A numerical study of the imperfection effect on ultrananocrystalline diamond properties under different loading paths and temperatures,” Composites Science and Technology. 2009. link Times cited: 8 NOT USED (low confidence) Z. Xu, W. Zhang, Z. Zhu, C. Ren, Y. Li, and P. Huai, “Effects of tube diameter and chirality on the stability of single-walled carbon nanotubes under ion irradiation,” Journal of Applied Physics. 2009. link Times cited: 20 Abstract: Using molecular dynamics method, we investigated the influen… read moreAbstract: Using molecular dynamics method, we investigated the influence of tube diameter and chirality on the stability of single-walled carbon nanotubes (CNTs) under ion irradiation. We found that in the energy range below 1 keV, the dependence of CNT stability on the tube diameter is no longer monotonic under C ion irradiation, and the thinner (5, 5) CNT may be more stable than the thicker (7, 7) CNT, while under Ar irradiation, the CNT stability increases still monotonically with the CNT diameter. This stability behavior was further verified by the calculations of the threshold ion energies to produce displacement damage in CNTs. The abnormal stability of thin CNTs is related to their resistance to the instantaneous deformation in the wall induced by ion pushing, the high self-heating capacity, as well as the different interaction properties of C and Ar ions with CNT atoms. We also found that under ion irradiation the stability of a zigzag CNT is better than that of an armchair CNT with the same diameter. This is because of the bonding structure difference between the armchair and the zigzag CNTs with respect to the orientations of graphitic networks as well as the self-healing capacity difference. (C) 2009 American Institute of Physics. [DOI: 10.1063/1.3194784] read less NOT USED (low confidence) M. Eshaghian-Wilner and A. D. Wissner-Gross, “Bio-Inspired and Nanoscale Integrated Computing.” 2009. link Times cited: 33 Abstract: Brings the latest advances in nanotechnology and biology to … read moreAbstract: Brings the latest advances in nanotechnology and biology to computing This pioneering book demonstrates how nanotechnology can create even faster, denser computing architectures and algorithms. Furthermore, it draws from the latest advances in biology with a focus on bio-inspired computing at the nanoscale, bringing to light several new and innovative applications such as nanoscale implantable biomedical devices and neural networks. Bio-Inspired and Nanoscale Integrated Computing features an expert team of interdisciplinary authors who offer readers the benefit of their own breakthroughs in integrated computing as well as a thorough investigation and analyses of the literature. Carefully edited, the book begins with an introductory chapter providing a general overview of the field. It ends with a chapter setting forth the common themes that tie the chapters together as well as a forecast of emerging avenues of research. Among the important topics addressed in the book are modeling of nano devices, quantum computing, quantum dot cellular automata, dielectrophoretic reconfigurable nano architectures, multilevel and three-dimensional nanomagnetic recording, spin-wave architectures and algorithms, fault-tolerant nanocomputing, molecular computing, self-assembly of supramolecular nanostructures, DNA nanotechnology and computing, nanoscale DNA sequence matching, medical nanorobotics, heterogeneous nanostructures for biomedical diagnostics, biomimetic cortical nanocircuits, bio-applications of carbon nanotubes, and nanoscale image processing. Readers in electrical engineering, computer science, and computational biology will gain new insights into how bio-inspired and nanoscale devices can be used to design the next generation of enhanced integrated circuits. read less NOT USED (low confidence) N. Rajabbeigi, B. Elyassi, T. Tsotsis, and M. Sahimi, “Molecular pore-network model for nanoporous materials. I: Application to adsorption in silicon-carbide membranes,” Journal of Membrane Science. 2009. link Times cited: 21 NOT USED (low confidence) J. Shimizu, L. B. Zhou, and T. Yamamoto, “Molecular Dynamics Simulation of Chemo-Mechanical Grinding (CMG) by Controlling Interatomic Potential Parameters to Imitate Chemical Reaction,” Advanced Materials Research. 2009. link Times cited: 0 Abstract: This paper reports a molecular dynamics simulation of chemo-… read moreAbstract: This paper reports a molecular dynamics simulation of chemo-mechanical grinding (CMG) of silicon wafer by controlling the interatomic potential parameters to imitate the chemo-mechanical or mechano-chemical reactions between an abrasive grain and a Si wafer. Some comparisons between diamond grinding and CMG were made by using the proposed simulation model. From the simulation results, reductions of surface damages, wears of abrasive grain and scratching forces in CMG were confirmed to be same as observed in actual experiments by a CeO2 abrasive wheel, and the availability of proposed simulation model was verified. read less NOT USED (low confidence) H. Pan and X. Si, “Molecular dynamics simulations of diameter dependence tensile behavior of silicon carbide nanotubes,” Physica B-condensed Matter. 2009. link Times cited: 28 NOT USED (low confidence) M. Malshe et al., “Development of generalized potential-energy surfaces using many-body expansions, neural networks, and moiety energy approximations.,” The Journal of chemical physics. 2009. link Times cited: 51 Abstract: A general method for the development of potential-energy hyp… read moreAbstract: A general method for the development of potential-energy hypersurfaces is presented. The method combines a many-body expansion to represent the potential-energy surface with two-layer neural networks (NN) for each M-body term in the summations. The total number of NNs required is significantly reduced by employing a moiety energy approximation. An algorithm is presented that efficiently adjusts all the coupled NN parameters to the database for the surface. Application of the method to four different systems of increasing complexity shows that the fitting accuracy of the method is good to excellent. For some cases, it exceeds that available by other methods currently in literature. The method is illustrated by fitting large databases of ab initio energies for Si(n) (n=3,4,...,7) clusters obtained from density functional theory calculations and for vinyl bromide (C(2)H(3)Br) and all products for dissociation into six open reaction channels (12 if the reverse reactions are counted as separate open channels) that include C-H and C-Br bond scissions, three-center HBr dissociation, and three-center H(2) dissociation. The vinyl bromide database comprises the ab initio energies of 71 969 configurations computed at MP4(SDQ) level with a 6-31G(d,p) basis set for the carbon and hydrogen atoms and Huzinaga's (4333/433/4) basis set augmented with split outer s and p orbitals (43321/4321/4) and a polarization f orbital with an exponent of 0.5 for the bromine atom. It is found that an expansion truncated after the three-body terms is sufficient to fit the Si(5) system with a mean absolute testing set error of 5.693x10(-4) eV. Expansions truncated after the four-body terms for Si(n) (n=3,4,5) and Si(n) (n=3,4,...,7) provide fits whose mean absolute testing set errors are 0.0056 and 0.0212 eV, respectively. For vinyl bromide, a many-body expansion truncated after the four-body terms provides fitting accuracy with mean absolute testing set errors that range between 0.0782 and 0.0808 eV. These errors correspond to mean percent errors that fall in the range 0.98%-1.01%. Our best result using the present method truncated after the four-body summation with 16 NNs yields a testing set error that is 20.3% higher than that obtained using a 15-dimensional (15-140-1) NN to fit the vinyl bromide database. This appears to be the price of the added simplicity of the many-body expansion procedure. read less NOT USED (low confidence) A. Okati, A. Zolfaghari, F. S. Hashemi, N. Anousheh, and H. Jooya, “Hydrogen Physisorption on Stone‐Wales Defect‐embedded Single‐walled Carbon Nanotubes,” Fullerenes, Nanotubes and Carbon Nanostructures. 2009. link Times cited: 9 Abstract: The adsorption of H2 on single‐walled carbon nanotubes with … read moreAbstract: The adsorption of H2 on single‐walled carbon nanotubes with and without Stone‐Wales defect is investigated as a function of temperature. The physisorption phenomenon is simulated by extensive equilibrium molecular dynamics. The interatomic interactions (covalent bonds) between the carbon atoms within the nanotube wall were modeled by the well known bond order Tersoff potential. To include curvature dependence in nonbonding interactions, a previously developed empirical force field scheme with modified van der Waals interactions was used. The results of applying the curvature modified intermolecular force field, at 77, 300 and 600 K, under moderate pressure of 10 bar show that the amount of adsorption is strongly influenced by the applied temperature; and that the adsorption energy is higher for nanotubes without Stone‐Wales defect. read less NOT USED (low confidence) Q. Cheng, H. Wu, Y. Wang, and X. Wang, “Atomistic simulations of shock waves in cubic silicon carbide,” Computational Materials Science. 2009. link Times cited: 8 NOT USED (low confidence) Z. Xu, W. Zhang, Z. Zhu, and P. Huai, “Molecular dynamics study of damage production in single-walled carbon nanotubes irradiated by various ion species,” Nanotechnology. 2009. link Times cited: 20 Abstract: The irradiation-induced damage production in single-walled c… read moreAbstract: The irradiation-induced damage production in single-walled carbon nanotubes (CNTs) by several types of ions is investigated using the molecular dynamics method with analytical potentials. We found that, in the incident energy range 25–1000 eV, the bonding action or the chemical effect of the ions could significantly enhance their damage capabilities to CNTs relative to that of non-bonding ions, and the dependence of damage yield on the ion mass is no longer monotonic. This is contrary to the previous viewpoint that the chemical aspect of the interaction is of no importance to the ion-induced defect production mechanism in CNTs. The bonding interaction of ions with CNTs also increases their implantation probabilities into CNTs. The chemical erosion effect of incident ions remarkably intensifies the sideward recoil from CNTs under irradiation while the downward recoil is still governed by the physical collision effect. read less NOT USED (low confidence) V. Haxha et al., “Empirical bond order potential calculations of the elastic properties of epitaxial InGaSbAs layers,” Microelectron. J. 2009. link Times cited: 2 NOT USED (low confidence) H.-jun Shen, “Mechanical properties and electronic structures of one BN nanotube under radial compression,” Frontiers of Materials Science in China. 2009. link Times cited: 3 NOT USED (low confidence) T. Nozawa, Y. Katoh, and L. Snead, “The effect of neutron irradiation on the fiber/matrix interphase of silicon carbide composites,” Journal of Nuclear Materials. 2009. link Times cited: 49 NOT USED (low confidence) A. Pedersen, L. Pizzagalli, and H. Jónsson, “Finding mechanism of transitions in complex systems: formation and migration of dislocation kinks in a silicon crystal,” Journal of Physics: Condensed Matter. 2009. link Times cited: 21 Abstract: We demonstrate how a saddle point search method can be used … read moreAbstract: We demonstrate how a saddle point search method can be used to study dislocation mobility in a covalent material—a non-trivial transition mechanism in a complex system. Repeated saddle point searches have been carried out by using the minimum mode following algorithm and dimer method in combination with several empirical potential functions for silicon in order to determine the mechanisms for the creation and migration of kinks on a non-dissociated screw dislocation in a silicon crystal. For the environment-dependent interatomic potential, three possible kink migration processes have been identified with activation energies of 0.17, 0.25, and 0.33 eV. The Lenosky potential gives a single, low energy migration mechanism with an activation energy of 0.07 eV, in good agreement with density functional theory results. The kink formation mechanism determined using this potential has an activation barrier of 1.2 eV. Calculations were also carried out with the Tersoff potential, Stillinger–Weber potential and Bolding–Andersen potential. The various potential functions give quite different results for the kink structure and the mechanism of transition. read less NOT USED (low confidence) T. E. B. Davies, D. P. Mehta, J. L. Rodríguez-López, G. H. Gilmer, and C. Ciobanu, “A Variable-Number Genetic Algorithm for Growth of 1-Dimensional Nanostructures into Their Global Minimum Configuration Under Radial Confinement,” Materials and Manufacturing Processes. 2009. link Times cited: 0 Abstract: The versatility of genetic algorithms for determining the at… read moreAbstract: The versatility of genetic algorithms for determining the atomic structure of clusters has been well established starting with the seminal article of Deaven and Ho (Physical Review Letters 75, 288, 1995). The genetic algorithm approach has also been extended to spatially periodic structures where it has been recognized that the variation of the number of atoms enables, or at least facilitates, the convergence of the global structural search. Here, we present another application of genetic algorithms: we show that a real space, variable-number algorithm can be used to retrieve simultaneously the lowest-energy structure and the optimal number of atoms of 1-dimensional (1-D) nanostructures subjected to desired conditions of radial confinement, starting from a single atom in the periodic unit cell. This algorithm is based on two-parent crossover operations and zero-penalty “mutations,” the latter of which allowing for the algorithm to evolve even from a genetic pool made of identical structures. We show that a sufficiently rich set of crossover operations (attempted with equal probability) can make the procedure effective for finding the atomic structure very different 1-D nanomaterials. We test the algorithm for carbon nanotubes and for Lennard-Jones nanotubes using runs where crossovers are applied either individually or in combination. By analyzing the acceptance probabilities of the structures created in these runs, we discuss the performance of the algorithm and possibilities for improvement. read less NOT USED (low confidence) M. Zhao, M. Iron, P. Staszewski, N. E. Schultz, R. Valero, and D. Truhlar, “Valence-Bond Order (VBO): A New Approach to Modeling Reactive Potential Energy Surfaces for Complex Systems, Materials, and Nanoparticles.,” Journal of chemical theory and computation. 2009. link Times cited: 12 Abstract: The extension of molecular mechanics to reactive systems, me… read moreAbstract: The extension of molecular mechanics to reactive systems, metals, and covalently bonded clusters with variable coordination numbers requires new functional forms beyond those popular for organic chemistry and biomolecules. Here we present a new scheme for reactive molecular mechanics, which is denoted as the valence-bond order model, for approximating reactive potential energy surfaces in large molecules, clusters, nanoparticles, solids, and other condensed-phase materials, especially those containing metals. The model is motivated by a moment approximation to tight binding molecular orbital theory, and we test how well one can approximate potential energy surfaces with a very simple functional form involving only interatomic distances with no explicit dependence on bond angles or dihedral angles. For large systems the computational requirements scale linearly with system size, and no diagonalizations or iterations are required; thus the method is well suited to large-scale simulations. The method is illustrated here by developing a force field for particles and solids composed of aluminum and hydrogen. The parameters were optimized against both interaction energies and relative interaction energies. The method performs well for pure aluminum clusters, nanoparticles, and bulk lattices and reasonably well for pure hydrogen clusters; the mean unsigned error per atom for the aluminum-hydrogen clusters is 0.1 eV/atom. read less NOT USED (low confidence) J. Godet, P. Hirel, S. Brochard, and L. Pizzagalli, “Evidence of two plastic regimes controlled by dislocation nucleation in silicon nanostructures,” Journal of Applied Physics. 2009. link Times cited: 48 Abstract: We performed molecular dynamics simulations of silicon nanos… read moreAbstract: We performed molecular dynamics simulations of silicon nanostructures submitted to various stresses and temperatures. For a given stress orientation, a transition in the onset of silicon plasticity is revealed depending on the temperature and stress magnitude. At high temperature and low stress, partial dislocation loops are nucleated in the {111} glide set planes. But at low temperature and very high stress, perfect dislocation loops are formed in the other set of {111} planes called shuffle. This result confirmed by three different classical potentials suggests that plasticity in silicon nanostructures could be controlled by dislocation nucleation. read less NOT USED (low confidence) L. Shen and Z. Chen, “An investigation of combined size, rate and thermal effects on the material properties of single crystal diamond,” International Journal of Materials & Product Technology. 2009. link Times cited: 5 Abstract: The ability to predict the properties of material specimens … read moreAbstract: The ability to predict the properties of material specimens with different sizes under various loading rates and temperatures is essential to evaluating the integrity and durability of NEMS/MEMS devices under extreme loading conditions. To better understand the rate, thermal and crystal orientation effects on size-dependent material responses, Molecular Dynamics (MD) simulations are performed with the use of Single Crystal Diamond (SCD) of various sizes under uniaxial tensile loading. In the MD simulations, the responses of SCD blocks of different sizes under and tensions at different loading rates and temperatures are studied. By combining the available experimental and simulation data, a hyper-surface is formulated to predict the combined size, rate and thermal effects on the strength of pristine diamond. read less NOT USED (low confidence) M. F. Russo, M. Maazouz, L. Giannuzzi, C. Chandler, M. Utlaut, and B. Garrison, “Trench formation and lateral damage induced by gallium milling of silicon,” Applied Surface Science. 2008. link Times cited: 20 NOT USED (low confidence) X. W. Zhou and F. Doty, “Embedded-ion method: An analytical energy-conserving charge-transfer interatomic potential and its application to the La-Br system,” Physical Review B. 2008. link Times cited: 30 NOT USED (low confidence) Y.-R. Chen, C. Weng, and S.-J. Sun, “Electronic properties of zigzag and armchair carbon nanotubes under uniaxial strain,” Journal of Applied Physics. 2008. link Times cited: 12 Abstract: Molecular dynamics simulations and quantum transport theory … read moreAbstract: Molecular dynamics simulations and quantum transport theory are employed to study the electronic properties of various zigzag and armchair carbon nanotubes (CNTs) under uniaxial compressive and tensile strains. It is found that the transfer integral decreases as the tensional strain increases. Furthermore, in the (3N+1,0) and (3N,0) zigzag nanotubes, the current induced by the application of a suitable bias voltage varies linearly with the magnitude of the applied strain. Thus, these particular zigzag CNTs are suitable for use as nanoscale strain sensors. Furthermore, the wider detected ranges occur in the smaller diameter of (3N,0) and (3N+1,0) tubes. However, in (11,0) zigzag nanotube and (5,5) armchair nanotube, the variation in current is not in accordance with Ohm’s law with respect to variations in the applied strain. Specifically, the electronic resistance decreases with increasing strain in (11,0) zigzag nanotube, while the current variations in different strains show the irregular and small pertu... read less NOT USED (low confidence) T. Li, D. Donadio, L. Ghiringhelli, and G. Galli, “Surface-induced crystallization in supercooled tetrahedral liquids.,” Nature materials. 2008. link Times cited: 79 NOT USED (low confidence) L. Marqués, L. Pelaz, I. Santos, P. López, and M. Aboy, “Structural transformations from point to extended defects in silicon : A molecular dynamics study,” Physical Review B. 2008. link Times cited: 12 Abstract: We use classical molecular dynamics simulation techniques to… read moreAbstract: We use classical molecular dynamics simulation techniques to study how point defects aggregate to form extended defects in silicon. We have found that $⟨110⟩$ chains of alternating interstitials and bond defects, a generalization of the Si di-interstitial structure, are metastable at room temperature but spontaneously transform into {311} defects when annealed at higher temperatures. Obtained atomic configurations and energetics are in good agreement with experiments and previous theoretical calculations. We have found a {311} structural unit which consists of two interstitial chains along $⟨110⟩$ but arranged differently with respect to the known {311} units. read less NOT USED (low confidence) I. Atsushi, N. Hiroaki, and T. Arimichi, “Molecular Dynamics Simulation of the Chemical Interaction between Hydrogen Atom and Graphene,” Journal of the Physical Society of Japan. 2008. link Times cited: 34 Abstract: We report the chemical interaction between a single hydrogen… read moreAbstract: We report the chemical interaction between a single hydrogen atom and graphene via a classical molecular dynamics simulation using a modified Brenner empirical bond order potential. Three interactions, that is, adsorption, reflection, and penetration, are observed in our simulation. The rates of the interactions depend on the incident energy of the hydrogen atom and the graphene temperature. This dependence can be explained by the following mechanisms: (1) The hydrogen atom experiences a repulsive force due to π electrons. (2) The graphene adsorbs the hydrogen atom and transforms its structure to an “overhang” configuration such as the sp 3 state. (3) The expansion of the six-membered ring causes the loss of the kinetic energy of the hydrogen atom during penetration. read less NOT USED (low confidence) V. Haxha et al., “The use of Abel-Tersoff potentials in atomistic simulations of InGaAsSb/GaAs.” 2008. link Times cited: 2 Abstract: In this paper we show the use of an optimally parameterized … read moreAbstract: In this paper we show the use of an optimally parameterized empirical potential of the Abell-Tersoff type for atomistic simulations of the elastic properties of the epitaxially grown quaternary alloy InGaAsSb. We find that the strain energy as a function of composition does not follow intuitive averages between the binary constituents. Furthermore we will provide an explanation for the often observed decomposition into ternary components. The predictions of our model appear to be substantiated by experimental evidence of growth of InAs self assembled quantum dots capped by GaSbAs. read less NOT USED (low confidence) C. F. Carlborg, J. Shiomi, and S. Maruyama, “Thermal boundary resistance between single-walled carbon nanotubes and surrounding matrices,” Physical Review B. 2008. link Times cited: 125 Abstract: Thermal boundary resistance (TBR) between a single-walled ca… read moreAbstract: Thermal boundary resistance (TBR) between a single-walled carbon nanotube (SWNT) and matrices of solid and liquid argon was investigated by performing classical molecular-dynamics simulations. Ther ... read less NOT USED (low confidence) V. Haxha et al., “The use of Abell–Tersoff potentials in atomistic simulations of InGaAsSb/GaAs,” Optical and Quantum Electronics. 2008. link Times cited: 2 NOT USED (low confidence) H. Ohta, A. Iwakawa, K. Eriguchi, and K. Ono, “An interatomic potential model for molecular dynamics simulation of silicon etching by Br+-containing plasmas,” Journal of Applied Physics. 2008. link Times cited: 22 Abstract: An interatomic potential model for Si–Br systems has been de… read moreAbstract: An interatomic potential model for Si–Br systems has been developed for performing classical molecular dynamics (MD) simulations. This model enables us to simulate atomic-scale reaction dynamics during Si etching processes by Br+-containing plasmas such as HBr and Br2 plasmas, which are frequently utilized in state-of-the-art techniques for the fabrication of semiconductor devices. Our potential form is based on the well-known Stillinger–Weber potential function, and the model parameters were systematically determined from a database of potential energies obtained from ab initio quantum-chemical calculations using GAUSSIAN03. For parameter fitting, we propose an improved linear scheme that does not require any complicated nonlinear fitting as that in previous studies [H. Ohta and S. Hamaguchi, J. Chem. Phys. 115, 6679 (2001)]. In this paper, we present the potential derivation and simulation results of bombardment of a Si(100) surface using a monoenergetic Br+ beam. read less NOT USED (low confidence) Z. Wang, D. Cheng, Z. Li, and X. Zu, “Simulation on the effects of torsion strain on the mechanical properties of SiC nanowires under tensile and compressive loading,” European Physical Journal-applied Physics. 2008. link Times cited: 3 Abstract: Molecular dynamics simulations with Tersoff potentials were … read moreAbstract: Molecular dynamics simulations with Tersoff potentials were used to study the tensile and compressive mechanical behavior of SiC nanowires with torsion strain. The simulation results show that small torsion strain does not affect the mechanical behavior of SiC nanowires. However, large torsion strain induces the decrease of the critical stress. With large torsion strain, the collapse occurs in the nanowires before tensile failure and compressive buckling, and deformation zone occurs in the collapsed part. read less NOT USED (low confidence) J. Adhikari, “Molecular simulation study of the structural properties in InxGa1−xAs alloys: Comparison between Valence Force Field and Tersoff potential models,” Computational Materials Science. 2008. link Times cited: 6 NOT USED (low confidence) H. Shim, Y. Zhang, and H.-C. Huang, “Twin formation during SiC nanowire synthesis,” Journal of Applied Physics. 2008. link Times cited: 40 Abstract: Silicon carbide (SiC) is a covalent material with many polyt… read moreAbstract: Silicon carbide (SiC) is a covalent material with many polytypes. The cubic phase, which has essentially zero formation energy, dominates in SiC nanowires. These nanowires contain twin boundaries that are far separated, in contradiction to the zero formation energy. This paper presents a model to account for the well-separated and equal-spaced twins in SiC nanowires. The model is based on the energy minimization of interfaces and edges near twin boundaries. Our theoretical result shows that the distance between neighboring twin boundaries is equal to 18%–31% of the diameter for SiC nanowires. This result is in agreement with our experimental data of SiC nanowires and also those of microwhiskers in the literature. read less NOT USED (low confidence) M. Makeev and D. Srivastava, “Molecular dynamics simulations of hypersonic velocity impact protection properties of CNT/a-SiC composites,” Composites Science and Technology. 2008. link Times cited: 17 NOT USED (low confidence) C. Cornwell et al., “Critical Carbon Nanotube Length in Fibers,” 2008 DoD HPCMP Users Group Conference. 2008. link Times cited: 10 Abstract: The excellent mechanical properties of carbon nanotubes (CNT… read moreAbstract: The excellent mechanical properties of carbon nanotubes (CNTs), such as low density, high stiffness, and great strength make them ideal candidates for reinforcement material in a wide range of high performance materials applications. The strength-to-weight ratio of CNT fibers are anticipated to exceed any materials currently available, yet theoretical calculations indicate that they still do not take full advantage of the superior mechanical properties of the constituent CNTs. The maximum theoretical strength of CNT fibers is obtained when the shear force is equal to the intrinsic breaking strength of the constituent CNTs. Load transfer is an important factor in determining the mechanical properties of the fibers. In this paper, quenched molecular dynamics is used to study the CNT-CNT interactions in a bundle of CNTs under strain. The bundles consist of parallel (5, 5) CNTs arranged in a hexagonal closest packed (HCP) configuration with one central CNT surrounded by six CNTs on its perimeter. The simulations explore the evolution of load transfer and local strain for slipping between CNTs during the extraction of a single CNT from a bundle. The results provide insight into the role contact length plays in determining the shear stress, yield stress, and contact length needed to achieve maximum fiber strength. read less NOT USED (low confidence) M. F. Russo, M. Maazouz, L. Giannuzzi, C. Chandler, M. Utlaut, and B. Garrison, “Gallium-Induced Milling of Silicon: A Computational Investigation of Focused Ion Beams,” Microscopy and Microanalysis. 2008. link Times cited: 22 Abstract: Molecular dynamics simulations are performed to model millin… read moreAbstract: Molecular dynamics simulations are performed to model milling via a focused ion beam (FIB). The goal of this investigation is to examine the fundamental dynamics associated with the use of FIBs, as well as the phenomena that govern the early stages of trench formation during the milling process. Using a gallium beam to bombard a silicon surface, the extent of lateral damage (atomic displacement) caused by the beam at incident energies of both 2 and 30 keV is examined. These simulations indicate that the lateral damage is several times larger than the beam itself and that the mechanism responsible for the formation of a V-shaped trench is due to both the removal of surface material, and the lateral and horizontal migration of subsurface silicon atoms toward the vacuum/crater interface. The results presented here provide complementary information to experimental images of trenches created during milling with FIBs. read less NOT USED (low confidence) Z. Wang, X. Zu, F. Gao, and W. J. Weber, “Atomistic simulations of the mechanical properties of silicon carbide nanowires,” Physical Review B. 2008. link Times cited: 69 Abstract: Molecular dynamics methods using the Tersoff bond-order pote… read moreAbstract: Molecular dynamics methods using the Tersoff bond-order potential are performed to study the nanomechanical behavior of [111]-oriented β-SiC nanowires under tension, compression, torsion, combined tension-torsion and combined compression-torsion. Under axial tensile strain, the bonds of the nanowires are just stretched before the failure of nanowires by bond breakage. The failure behavior is found to depend on size and temperatures. Under axial compressive strain, the collapse of the SiC nanowires by yielding or column buckling mode depends on the length and diameters of the nanowires, and the latter is consistent with the analysis of equivalent continuum structures using Euler buckling theory. The nanowires collapse through a phase transformation from crystal to amorphous structure in several atomic layers under torsion strain. Under combined loading the failure and buckling modes are not affected by the torsion with a small torsion rate, but the critical stress decreases with increasing the torsion rate. Torsion buckling occurs before the failure and buckling with a big torsion rate. Plastic deformation appears in the buckling zone with further increasing the combined loading. read less NOT USED (low confidence) A. Kleinsorge, E. Schöll, M. Scheffler, and P. Kratzer, “Tight-Binding Simulationen von InAs/GaAs Quantenpunkten.” 2008. link Times cited: 0 Abstract: For several years, the technological potential of self-organ… read moreAbstract: For several years, the technological potential of self-organized grown quantum dots (QD) has been known. Their usage as an e ective light source or memory requires the precise prediction of their electronic properties. Hence, this report will study InAs quantum dots at GaAs substrate. After relaxing the atomic positions with a many body potential of Abell-Terso type, I calculated the electronic structure using the Tight-Binding method which is reasonable for large systems. During the investigation of wavefunctions depend on the shape, size and temperature, the impact of strain showed up as the main reason for the p-splitting. Typically at QDs (relative to lateral dimensions) are grown, therefore the energy of bound states depends mostly on their height. The crystal's orientation had a strong impact on the wavefunctions. Moreover, the understanding of STS experiments, which inspected the connection between shape and wavefunction, is better now. Because of the possible simultaneous occupation of semiconductor quantum dots with an electron and a hole, there is a dipole moment of the exciton (due to their di erent behaviour inside the QD). This is a further experimental access to inner details of the QD. I ascertained the interplay of composition pro le and dipole moment. The force caused by additional potentials (piezoelectricity, outer homogen and inhomogen electrical elds) was also an subject of my inquiries. To conclude, I executed kMC simulations, to better apprehend the annealing experiments. I was able to explain the narrowing of the PL peak width better. Furthermore I showed a rami cation of the strain eld to the di usion development (and the following electronic properties). read less NOT USED (low confidence) J. E. Pérez-Terrazas, A. Romero, and M. Terrones, “Effects of novel and stable intermolecular connections in the mechanical and electronic properties of C60 polymerized structures,” Chemical Physics Letters. 2008. link Times cited: 11 NOT USED (low confidence) E. Halac, E. Burgos, and M. Reinoso, “Amorphous carbon multilayered films studied by molecular dynamics simulations,” Physical Review B. 2008. link Times cited: 6 NOT USED (low confidence) P. A. Apte and X. Zeng, “Anisotropy of crystal-melt interfacial free energy of silicon by simulation,” Applied Physics Letters. 2008. link Times cited: 58 Abstract: We extend the cleaving wall method to a nonpairwise additive… read moreAbstract: We extend the cleaving wall method to a nonpairwise additive potential. Using this method, we compute the anisotropy of crystal-melt interfacial free energy γ for Stillinger–Weber potential of silicon [F. H. Stillinger and T. A. Weber, Phys. Rev. B 31, 5262 (1985)]. The calculated γ for (100), (111), and (110) orientations are 0.42±0.02, 0.34±0.02, and 0.35±0.03J∕m2, respectively. The anisotropy in γ we found is consistent with the experimental observation that Si(100)-melt interface develops (111) facets and also helps in explaining a higher undercooling observed for Si(111)-melt interface in Czochralski method. read less NOT USED (low confidence) S. M. Kim and H. Kweon, “A Basic Study of the CNT-Biomolecule Conjugation by Molecular Dynamics Analysis,” Key Engineering Materials. 2008. link Times cited: 0 Abstract: This study is about the underlying conjugation mechanism bet… read moreAbstract: This study is about the underlying conjugation mechanism between carbon nanotube and biomolecule by molecular dynamics. In order to know about the conjugation mechanism between carbon nanotube and biomolecule, molecular dynamics simulation between carbon nanotube and water molecules was taken first and then molecular dynamics simulation between biomolecules and water molecules was taken. At simulation between carbon nanotube and water molecules, kinetic energy and potential energy became decreased with time and it means that the distance between carbon nanotube and water molecules becomes distant with time by van der Waals force and hydrophobic force. Simulation results between biomolecules and water molecules are also same as the results of carbon nanotube and water molecules simulation. From these two simulations, the conjugation mechanism between carbon nanotube and biomolecules can be predicted. Also, from simulation results between carbon nanotube and biomolecules, the distance between carbon nanotube and biomolecules becames close and it supports previous two simulation results. From these results, we can know that biomolecules enter into the carbon nanotube's cavity because of van der Waals force and hydrophobic force. read less NOT USED (low confidence) J. R. Morris, R. Aga, V. A. Levashov, and T. Egami, “Many-body effects in bcc metals: An embedded atom model extension of the modified Johnson pair potential for iron,” Physical Review B. 2008. link Times cited: 8 Abstract: In this work, we generalize a many-body extension of pairwis… read moreAbstract: In this work, we generalize a many-body extension of pairwise interatomic potentials originally proposed by Baskes, in particular, showing how a pair potential interacting with multiple near neighbor shells may be extended to an embedded atom form without changing the cohesive energy or lattice constant. This is important for parametric studies of interatomic potentials, particularly how elastic constants affect other properties. Specifically, we apply this to the modified Johnson potential, a pair potential for Fe that has been used extensively for understanding liquid and amorphous metals. read less NOT USED (low confidence) K. Nishio, T. Ozaki, T. Morishita, and M. Mikami, “Formation of silicon-fullerene-linked nanowires inside carbon nanotubes: A molecular-dynamics and first-principles study,” Physical Review B. 2008. link Times cited: 7 Abstract: We study the formation of Si nanowires inside carbon nanotub… read moreAbstract: We study the formation of Si nanowires inside carbon nanotubes by using a combination of empirical molecular-dynamics and first-principles approaches. Molecular-dynamics simulations demonstrate that liquid Si encapsulated into a (13,0) nanotube crystallizes into a nanowire composed of linked ${\mathrm{Si}}_{16}$ fullerene cages. On the other hand, a nanowire composed of linked ${\mathrm{Si}}_{20}$ fullerene cages forms inside a (14,0) nanotube. The stabilities of these nanowires are further confirmed by first-principles calculations. We also find that the freestanding ${\mathrm{Si}}_{16}$-linked nanowire is a metal, while the ${\mathrm{Si}}_{20}$-linked nanowire is a semiconductor. The present findings suggest that the choice of the nanotube size allows us to control the structure of Si nanowires, and therefore to tailor the material properties. read less NOT USED (low confidence) C. Cress, C. Bailey, S. Hubbard, D. Wilt, S. Bailey, and R. Raffaelle, “Radiation effects on strain compensated quantum dot solar cells,” 2008 33rd IEEE Photovoltaic Specialists Conference. 2008. link Times cited: 9 Abstract: The effects of alpha-particle irradiation on the current-vol… read moreAbstract: The effects of alpha-particle irradiation on the current-voltage characteristics and spectral responsivity of GaAs-based p-type / intrinsic / n-type solar cell devices containing 5-layers of InAs quantum dots (QD) grown with strain-compensation layers were investigated. The devices were subjected to ∼4.2 MeV alpha-particle irradiation and the variation in the air mass zero short circuit current, open circuit voltage, fill factor, efficiency, and spectral responsivity were monitored as function of fluence and displacement damage dose. The measured spectral responsivity values of the quantum dot solar cell at wavelengths above and below the GaAs bandgap were used to investigate the rate of degradation in the InAs QDs in comparison to that of bulk GaAs. A computational model was developed to study the effects of strain on the energy threshold for atomic displacement (knock-out energy) of indium and arsenic within an InAs QD. Using the many-body Tersoff potentials, the energy of the primary knock-on atom occupying various sites within the lattice was calculated as a function of strain. The observed increases in minimum knock-out energy and interstitial-site energy with strain suggest a potential mechanism for the increased radiation tolerance observed in Stranski-Krastanow grown QDs. read less NOT USED (low confidence) F. S. Hashemi, A. Zolfaghari, P. Pourhossein, and H. Jooya, “Methane Physisorption on Single‐walled Carbon Nanotubes: A Molecular Dynamics Study,” Fullerenes, Nanotubes and Carbon Nanostructures. 2008. link Times cited: 9 Abstract: The adsorptive behavior of methane on isolated single‐walled… read moreAbstract: The adsorptive behavior of methane on isolated single‐walled carbon nanotubes is investigated as a function of temperature and diameter of the nanotubes. The physisorption phenomenon is simulated by extensive equilibrium molecular dynamics. The interatomic interactions (covalent bonds) between the carbon atoms within the nanotube wall were modeled by the well‐known bond order Tersoff potential. The applied intermolecular forces are modeled using the modified form of the well‐known Lennard‐Jones potential based on the tube curvature. The adsorption/desorption cycle was introduced by calculating the radial distribution function (RDF) for C‐CH4 distance during simulations at the range of temperatures under consideration. The simulations were carried out by exposing methane on (3, 3) and (9, 9) single‐walled carbon nanotubes, at temperatures from 200 K to 600 K at 100 K intervals under ambient pressure of 1 bar. The results show that the amount of adsorption is strongly influenced by the applied temperature and that the adsorption energy is higher for nanotubes with smaller diameters. Moreover, analyzing the deformation of the nanotube adsorbents during the simulations time indicates that increasing the operating temperatures not only decreases the amount of adsorption but also imposes more nanotube distortions. read less NOT USED (low confidence) N. Pugno, A. Carpinteri, M. Ippolito, A. Mattoni, and L. Colombo, “Atomistic fracture: QFM vs. MD ☆,” Engineering Fracture Mechanics. 2008. link Times cited: 26 NOT USED (low confidence) D.-E. Kim, S.-I. Oh, and S. Rhim, “MOLECULAR-DYNAMICS STUDY OF ENERGETIC CLUSTER IMPACT ON SILICON,” International Journal of Modern Physics B. 2008. link Times cited: 0 Abstract: To investigate the dynamic deformation behavior of silicon i… read moreAbstract: To investigate the dynamic deformation behavior of silicon induced by the energetic cluster impact at an atomistic level, cluster impact simulations are carried out using molecular dynamics. Clusters are emitted to the silicon (100) surface with external kinetic energies varying from 1 to 10 eV/atom. While a structural phase transformation is identified as the dominant deformation mechanism in silicon due to the increased pressure caused by the energetic cluster impact, its deformation pathway tends to change according to the kinetic energy of cluster. In the lower energy region, the initial diamond structure of silicon is first transformed into the beta-tin structure during the impact process, and then this high-pressure structure is transformed into an amorphous structure after the impact process is completed. This result is very similar to those computed in the quasi-static deformation. On the other hand, amorphous structures are directly transformed from initial diamond structure in the higher energy region. Additionally, the propagation of the shock-wave is accompanied in this deformation. read less NOT USED (low confidence) J.-M. Lu, Y.-C. Wang, J.-G. Chang, M.-H. Su, and C. Hwang, “Molecular-Dynamic Investigation of Buckling of Double-Walled Carbon Nanotubes under Uniaxial Compression(Condensed matter: structure and mechanical and thermal properties),” Journal of the Physical Society of Japan. 2008. link Times cited: 7 Abstract: This paper studies the buckling phenomena and mechanical beh… read moreAbstract: This paper studies the buckling phenomena and mechanical behavior of single-walled carbon nanotubes (SWNTs) and double-walled carbon nanotubes (DWNTs) via molecular dynamics simulations. The Tersoff interatomic C–C potential is adopted. Using a dimensionless parameter, slenderness ratio (SR, the ratio of length to diameter), we investigate the mechanical behavior of long and short nanotubes under compression through their buckling modes, total strain energy and strain energy density, as well as post-buckling. The curvatures of strain energy provide a means to measure the Young’s modulus of the nanotubes. Moreover, jumps in either the strain energy or strain energy density indicate identical mechanical buckling strains, and are studied in relation to buckling modes. In our simulations, a transition time is observed for short nanotubes to reach stable vase-like buckling mode, indicating a time-dependent property of nanotubes. Furthermore, nanotubes with small SR can bear higher compressive load after their first buckling. In addition, nanotubes with same chirality exhibit roughly the same elastic modulus, regardless of their lengths, when applied compressive strains are less than 5% strain. However, long nanotubes show smaller buckling strength. Effects of temperature at 300 K on buckling strength for SWNT are also discussed in connection to our present study at 1 K. read less NOT USED (low confidence) L. Shen and Z. Chen, “The loading history and crystal orientation effects on the size-dependency of single crystal diamond properties,” Computational Mechanics. 2008. link Times cited: 7 NOT USED (low confidence) M. Matsukuma and S. Hamaguchi, “Molecular dynamics simulation of microcrystalline Si deposition processes by silane plasmas,” Thin Solid Films. 2008. link Times cited: 5 NOT USED (low confidence) Y. Liang, Y. B. Guo, M. J. Chen, and Q. Bai, “Molecular dynamics simulation of heat distribution during nanometric cutting process,” 2008 2nd IEEE International Nanoelectronics Conference. 2008. link Times cited: 4 Abstract: In nanometric cutting process the actual material removal ca… read moreAbstract: In nanometric cutting process the actual material removal can take place at atomic level, which makes the acquisition of heat distribution difficult or impossible, however a detailed investigation of heat distribution is crucial for understanding the nature of material removal mechanisms, chip formation and surface generation etc. In this work, molecular dynamics (MD) is used to study heat distribution during nanometric cutting of single-crystal silicon with the aid of Tersoff potential. The MD calculation data are converted into continues heat distribution and showed with different colors in 3D images under various cutting parameters. The result of the simulation shows that there is a narrow region with high temperature under tool edge where most of heat generated due to plastic deformation of workpiece material, the high temperature extends from here to chip, diamond tool and workpiece, but the highest temperature lies in chip. The heat distribution is roughly concentric around the tool edge and a steep temperature gradient is observed between diamond tool and chip. A higher temperature region below the tool edge implied a larger shear stress is built up in a local region at high cutting speed with a rougher machined surface behind than at low cutting speed. read less NOT USED (low confidence) H. Wang, W. Chu, H. Jin, and Y. Xiong, “Atomistic simulation of Si–Ge clathrate alloys,” Chemical Physics. 2008. link Times cited: 7 NOT USED (low confidence) S. Satake, N. Inoue, J. Taniguchi, and M. Shibahara, “Molecular dynamics simulation for focused ion beam processing: a comparison between computational domain and potential energy.” 2008. link Times cited: 7 Abstract: Molecular dynamics calculation was performed to simulate nan… read moreAbstract: Molecular dynamics calculation was performed to simulate nano-Focused Ion Beam (FIB) processing on a Silicon surface. A combination of potential functions of impacting ion and target atoms was evaluated, and the influence of computational domain along the lateral directions was estimated. The target Silicon atoms on (100) surface of Si crystal were described by Tersoff potential. Ion-beam source was represented by Ga ions, where the optimal potential of the Ga ion was chosen by comparing Lennard-Jones, Tersoff, and ZBL (Ziegler, Biersack and Littmark) potentials. The initial velocity of ion was 3.327×105 m/sec at 40 keV. First, for the evaluation of combined potential functions of Si atoms and Ga ion, a small computation volume (2.58 nm × 2.58 nm × 51.99 nm) consisting of 19200 Si atoms was chosen with a single Ga ion impacting on Si (100) surface. On the combination of Tersoff potential for Si atom, and ZBL potential for Ga ion, the depth of the combination was found to be in good agreement with the depth of SRIM. Next, the influences of computational domain in lateral direction were evaluated by a larger region with a combination of potentials where the computational volume was (8.55 nm × 8.55 nm × 51.99 nm) constructed by 196608 Si atoms. Consequently, the energy transfer along lateral computational length was faster in larger region than in smaller region, and the entire initial energy of Ga ion was transmitted to the target material. read less NOT USED (low confidence) E.-H. Kim, Y.-H. Shin, and B.-J. Lee, “A modified embedded-atom method interatomic potential for Germanium,” Calphad-computer Coupling of Phase Diagrams and Thermochemistry. 2008. link Times cited: 86 NOT USED (low confidence) J.-M. Lu, C. C. Hwang, Q. Kuo, and Y. Wang, “Mechanical buckling of multi-walled carbon nanotubes: The effects of slenderness ratio,” Physica E-low-dimensional Systems & Nanostructures. 2008. link Times cited: 25 NOT USED (low confidence) F. Gou, L. Zen, and C. Meng, “Molecular dynamics simulations of CF3 etching of SiC,” Thin Solid Films. 2008. link Times cited: 1 NOT USED (low confidence) K. Nishio, T. Ozaki, T. Morishita, W. Shinoda, and M. Mikami, “Electronic and optical properties of polyicosahedral Si nanostructures : A first-principles study,” Physical Review B. 2008. link Times cited: 7 Abstract: In a previous molecular dynamics study, we predicted a polyi… read moreAbstract: In a previous molecular dynamics study, we predicted a polyicosahedral Si nanostructure which has a ${\mathrm{Si}}_{20}$ fullerene cage per icosahedral ${\mathrm{Si}}_{100}$ nanodot. The unique cage structure is distinct from the crystalline diamond Si nanostructure. Encapsulating a guest atom into the ${\mathrm{Si}}_{20}$ cage allows us to tune the electronic and optical properties. Here, we report on a systematic first-principles study of the effect of the sodium and iodine doping on the physical properties of the hydrogen-terminated polyicosahedral Si nanostructures. Our calculations reveal the strongly guest-dependent and size-dependent physical properties of the polyicosahedral Si nanostructures: (1) the semiconducting guest-free polyicosahedral nanowire becomes metallic by the sodium and iodine doping, (2) the quantum confinement effect is observed in the icosahedral and polyicosahedral nanodots, and (3) the radiative recombination rate comparable to the luminescent amorphous Si nanostructures is expected from some of the Na- and I-doped polyicosahedral nanostructures. From these results, we assert that the polyicosahedral Si nanostructures are promising candidates for the building blocks of the future nanoscale optoelectronic devices. read less NOT USED (low confidence) A. Pascale, I. Berbezier, A. Ronda, and P. Kelires, “Self-assembly and ordering mechanisms of Ge islands on prepatterned Si(001),” Physical Review B. 2008. link Times cited: 40 NOT USED (low confidence) T. Morishita, K. Nishio, and M. Mikami, “Formation of single-and double-layer silicon in slit pores,” Physical Review B. 2008. link Times cited: 60 Abstract: We report on the formation of quasi-two-dimensional nanostru… read moreAbstract: We report on the formation of quasi-two-dimensional nanostructures of silicon by quenching liquid silicon confined in slit nanopores. The formation processes are investigated by molecular-dynamics (MD) calculations using the Tersoff potential. We find that single- or double-layer nanosheets are formed according to the slit width. Both of these nanosheets contain hexagonal planes, and the structure of the single-layer nanosheet is the same as that of graphene. The stability of these nanosheets within the slit nanopore is confirmed by first-principles MD calculations up to $300\phantom{\rule{0.3em}{0ex}}\mathrm{K}$. The present findings demonstrate the possibility of the synthesis of novel nanostructures by confinement in nanopores. read less NOT USED (low confidence) L. Xiong and Y. Chen, “Effects of Dopants on the Mechanical Properties of Nanocrystalline Silicon Carbide Thin Film,” Cmes-computer Modeling in Engineering & Sciences. 2008. link Times cited: 6 Abstract: This paper presents the application of an atomistic field th… read moreAbstract: This paper presents the application of an atomistic field theory (AFT) in modeling and simulation of boron, boron/nitrogen and silicon/nitrogen-doped nanocrystalline silicon carbide (B-, BN-, SiN-SiC). Intergranular glassy films (IGFs) and nano-sized pores have been obtained in triple junctions of the grains in nanocrystalline SiC (nc-SiC). Residual tensile stress in the SiC grains and compressive stress in the grain boundaries (GBs) are observed. Under uniaxial tension, the constitutive responses of nanocrystalline SiC were reproduced from the simulations. It is found that the mechanical properties of nanocrystalline SiC are strongly dependent on the compositions of GBs. Although there are more nano-sized pores in the triple junctions of the grains, interestingly, compared with B-Si and BN-SiC, SiN-SiC exhibits the highest strength. Numerically, for crystalline materials, it has been shown that AFT can be naturally reduced to atomic-level simulation when the finite element meshes is reduced to the network of lattice. Keyword: nanocrystalline ceramics, silicon carbide, atomistic field theory, dopants read less NOT USED (low confidence) M. Matsumoto, T. Kunisawa, and P. Xiao, “Relaxation of Phonons in Classical MD Simulation,” Journal of Thermal Science and Technology. 2008. link Times cited: 5 Abstract: We propose a novel technique of molecular dynamics simulatio… read moreAbstract: We propose a novel technique of molecular dynamics simulation to evaluate the relaxation time of phonons in solids for investigation of solid heat conductivity. The basic idea is to observe relaxation behavior of the power spectrum of atomic velocities after energetically stimulating modes in a specific frequency region. The transient entropy S(t) is defined with the power spectrum based on non-equilibrium statistical mechanics to quantitatively evaluate the relaxation speed. In this paper, two example systems are shown; Lennard-Jones model crystal and silicon crystal. For both systems, we found that the observed S(t) is well fitted to a single exponential function, from which we can obtain a frequency-dependent relaxation time. read less NOT USED (low confidence) D. Torii, T. Nakano, and T. Ohara, “Contribution of inter- and intramolecular energy transfers to heat conduction in liquids.,” The Journal of chemical physics. 2008. link Times cited: 69 Abstract: The molecular dynamics expression of heat flux, originally d… read moreAbstract: The molecular dynamics expression of heat flux, originally derived by Irving and Kirkwood [J. Chem. Phys. 18, 817 (1950)] for pairwise potentials, is generalized in this paper for systems with many-body potentials. The original formula consists of a kinetic part and a potential part, and the latter term is found in the present study to be expressible as a summation of contributions from all the many-body potentials defined in the system. The energy transfer among a set of sites for which a many-body potential is defined is discussed and evaluated by the rate of increase in the kinetic energy of each site due to the potential, and its accumulation over all the potentials in the system is shown to make up the potential part of the generalized expression. A molecular dynamics simulation for liquid n-octane was performed to demonstrate the applicability of the new expression obtained in this study to measure the heat flux and to elucidate the contributions of inter- and intramolecular potentials to heat conduction. read less NOT USED (low confidence) A. Chatterjee, A. Bhat, and K. Matocha, “Investigation of electrically active defects of silicon carbide using atomistic scale modeling and simulation,” Physica B-condensed Matter. 2007. link Times cited: 10 NOT USED (low confidence) J. Lee, J. Grossman, J. Reed, and G. Galli, “Lattice thermal conductivity of nanoporous Si : Molecular dynamics study,” Applied Physics Letters. 2007. link Times cited: 128 Abstract: Lattice thermal conductivity κl of Si with nanometer-sized p… read moreAbstract: Lattice thermal conductivity κl of Si with nanometer-sized pores along the [001] direction is calculated as a function of pore diameter (dp) and pore spacing (ds) by employing a molecular dynamics approach. Our results show that κl across pores is smaller than the bulk value by over two orders of magnitude at room temperature, and that it decreases (increases) as a function of dp (ds) for fixed ds (dp). This behavior is shown to originate from the reduction in the channels for phonon transport and the increased phonon scattering at the pore surfaces. read less NOT USED (low confidence) M. Cai, X. P. Li, and M. Rahman, “High-pressure phase transformation as the mechanism of ductile chip formation in nanoscale cutting of silicon wafer,” Proceedings of the Institution of Mechanical Engineers, Part B: Journal of Engineering Manufacture. 2007. link Times cited: 30 Abstract: In nanoscale cutting of silicon wafer, it has been found tha… read moreAbstract: In nanoscale cutting of silicon wafer, it has been found that under certain conditions ductile mode chip formation can be achieved. In order to understand the mechanism of the ductile chip formation, experiments and molecular dynamics (MD) simulations have been conducted in this study. The results of MD simulations of nanoscale cutting of silicon showed that because of the high hydrostatic pressure in the chip formation zone, there is a phase transformation of the monocrytslline silicon from diamond cubic structure to both β silicon and amorphous phase in the chip formation zone, which results in plastic deformation of the workpiece material in the chip formation zone, as observed in experiments. The results further showed that although from experimental observation the plastic deformation in the ductile mode cutting of silicon is similar to that in cutting of ductile materials, such as aluminium, in ductile mode cutting of silicon it is the phase transformation of silicon rather than atomic dislocation that results in the plastic deformation. read less NOT USED (low confidence) J. Lin, T. Fang, C. Wu, and K.-H. Houng, “Contact and frictional behavior of rough surfaces using molecular dynamics combined with fractal theory,” Computational Materials Science. 2007. link Times cited: 21 NOT USED (low confidence) L. Snead, T. Nozawa, Y. Katoh, T. Byun, S. Kondo, and D. Petti, “Handbook of SiC properties for fuel performance modeling,” Journal of Nuclear Materials. 2007. link Times cited: 1165 NOT USED (low confidence) M. Ross, “Equations of State.” 2007. link Times cited: 0 Abstract: The article contains sections titled:
1
Introduction
… read moreAbstract: The article contains sections titled:
1
Introduction
2
Fundamental Principles
2.1
Intermolecular Forces
2.2
Statistical Thermodynamics
3
Overview of the Phase Diagram
3.1
Critical Point
3.2
Law of Corresponding States
3.3
Melting of Solids
3.4
Superfluids
3.5
Plasmas—The Saha-Boltzmann Ionization Equation
4
Statistical Mechanics of Fluids
4.1
Virial Expansion for a One-Component Gas
4.2
Van der Waals Equation
4.3
Computer Simulations—Exact Results
4.4
Perturbation Theory
4.5
Integral-Equation Theories
5
the Theory of Solids
5.1
The Local-Density Approximation
5.2
The Mie-Gruneisen Equation of State
5.3
Thermal Electron Properties
5.4
Empirical Equations of State
6
Matter At Extreme Conditions
6.1
Static Experiments
6.2
Shock-Wave Experiments
6.3
Pressure-Induced Transitions
6.4
Metallic State at Ultrahigh Density
6.5
Statistical Atom Models
6.6
Shell-Structure Effects in Compressed Solids
7
Acknowledgment read less NOT USED (low confidence) H. Whitlow and S. Nakagawa, “Low-energy primary knock on atom damage distributions near MeV proton beams focused to nanometre dimensions,” Nuclear Instruments & Methods in Physics Research Section B-beam Interactions With Materials and Atoms. 2007. link Times cited: 14 NOT USED (low confidence) Y.-R. Chen and C. Weng, “Electronic properties of zigzag carbon nanotubes under uniaxial strain,” Carbon. 2007. link Times cited: 40 NOT USED (low confidence) M. Ippolito, A. Mattoni, N. Pugno, and L. Colombo, “Failure strength of brittle materials containing nanovoids,” Physical Review B. 2007. link Times cited: 15 Abstract: By means of atomistic simulations, we investigate the failur… read moreAbstract: By means of atomistic simulations, we investigate the failure strength in plane strain conditions of a brittle solid containing nanosized stress concentrators, i.e., a straight crack, a cylindrical hole, or a spherical hole. We find that the failure strength of the defected solid strongly depends on the defect size, in contrast with the predictions of standard elasticity theory. A high strength reduction due to voids as large as few atoms is observed. Such results have been included in two analytical failure criteria, namely, the average stress criterion and the point stress criterion. Both models introduce a length scale typical of the system, tailored at describing the process zone near the nanovoids. We provide a numerical estimate for this length scale, which is found to be specific for any defect, and we reconcile atomistic results to continuum into a coherent picture. read less NOT USED (low confidence) G. Dongming, G. Xiaoguang, K. Renke, and J. Zhu-ji, “Theoretical and experimental analysis on super precision grinding of monocrystal silicon,” Frontiers in Mechanical Engineering. 2007. link Times cited: 0 NOT USED (low confidence) X. Han, “Study micromechanism of surface planarization in the polishing technology using numerical simulation method,” Applied Surface Science. 2007. link Times cited: 41 NOT USED (low confidence) L. Shen and Z. Chen, “An investigation of grain size and nitrogen-doping effects on the mechanical properties of ultrananocrystalline diamond films,” International Journal of Solids and Structures. 2007. link Times cited: 31 NOT USED (low confidence) M. Amkreutz, “On the Existence of Voids Within Precursor‐derived Amorphous Si‐C‐N Ceramics,” Soft Materials. 2007. link Times cited: 5 Abstract: Several model structures have been generated by molecular dy… read moreAbstract: Several model structures have been generated by molecular dynamics simulations for two precursor‐derived amorphous Si‐C‐N ceramics with stoichiometry Si37C32N31 and Si40C24N36, respectively. These can be considered as possible atomistic model structures for the real amorphous ceramics. Although these models vary in their local atomic arrangements, all have been found to possess the same main structural properties being characteristic for the amorphous state of the precursor‐derived ceramics. This is not only the already found phase separation into amorphous Si3N4 and layered amorphous graphitic carbon on the nanoscale with interconnecting Si‐C bonds between these two phases, but also the existence of voids within the amorphous structure at the interfaces of the different phases. These voids have only a small extension—like the carbon phase—and their existence is in accordance with the density inhomogeneities found in diffraction experiments. These inhomogeneities can hence be attributed not only to a phase separation but also to the existence of the voids. Because of these voids, the density of the residual structure is definitely larger than the macroscopic one measured in experiment. In the case of Si37C32N31, it is estimated to be 3.0±0.1 g/cm3, for Si40C24N36 it is 2.8±0.1 g/cm3. read less NOT USED (low confidence) L. Shen and Z. Chen, “A study of the loading path and crystal orientation effects on size-dependent limit strength,” Engineering Fracture Mechanics. 2007. link Times cited: 11 NOT USED (low confidence) P. Śpiewak et al., “Molecular dynamics simulation of intrinsic point defects in germanium,” Journal of Crystal Growth. 2007. link Times cited: 14 NOT USED (low confidence) S. Nakagawa, H. Hashimoto, and G. Betz, “Antisite defects in a chemical compound crystal caused by ion irradiation,” Nuclear Instruments & Methods in Physics Research Section B-beam Interactions With Materials and Atoms. 2007. link Times cited: 8 NOT USED (low confidence) J. Wang and J.-S. Wang, “Characteristics of phonon transmission across epitaxial interfaces: a lattice dynamic study,” Journal of Physics: Condensed Matter. 2007. link Times cited: 18 Abstract: Phonon transmission across epitaxial interfaces is studied w… read moreAbstract: Phonon transmission across epitaxial interfaces is studied within the lattice dynamic approach. The transmission shows weak dependence on frequency for a lattice wave with a fixed angle of incidence. The dependence on azimuth angle is found to be related to the symmetry of the boundary interface. The transmission varies smoothly with the change of the incident angle. A critical angle of incidence exists when the phonon is incident from the side with large group velocities to the side with low ones. No significant mode conversion is observed among different acoustic wave branches at the interface, except when the incident angle is near the critical value. Our theoretical result of the Kapitza conductance GK across the Si–Ge(100) interface at temperature T = 200 K is 4.6 × 108 W K−1 m−2. A scaling law at low temperature is also reported. Based on the features of transmission obtained within the lattice dynamic approach, we propose a simplified formula for thermal conductance across the epitaxial interface. A reasonable consistency is found between the calculated values and the experimentally measured ones. read less NOT USED (low confidence) B.-M. Lee, H. Baik, B. Seong, S. Munetoh, and T. Motooka, “Molecular-dynamics analysis of the nucleation and crystallization process of Si,” Physica B-condensed Matter. 2007. link Times cited: 14 NOT USED (low confidence) J. Wang and J.-S. Wang, “Dimensional crossover of thermal conductance in nanowires,” Applied Physics Letters. 2007. link Times cited: 38 Abstract: Dimensional dependence of thermal conductance at low tempera… read moreAbstract: Dimensional dependence of thermal conductance at low temperatures in nanowires is studied using the nonequilibrium Green’s function method. The authors’ calculation shows a smooth dimensional crossover of thermal conductance in nanowire from one-dimensional to three-dimensional behavior with the increase of diameters. The results are consistent with the experimental findings that the temperature dependence of thermal conductance at low temperature for diameters from tens to hundreds of nanometers will be close to the Debye law. The calculation also suggests that universal thermal conductance is only observable in nanowires with small diameters. They also find that the interfacial thermal conductance across Si and Ge nanowires is much lower than the corresponding value in bulk materials. read less NOT USED (low confidence) M. Cai, X. Li, and M. Rahman, “Study of the Mechanism of Groove Wear of the Diamond Tool in Nanoscale Ductile Mode Cutting of Monocrystalline Silicon,” Journal of Manufacturing Science and Engineering-transactions of The Asme. 2007. link Times cited: 44 Abstract: In nanoscale ductile mode cutting of the monocrystalline sil… read moreAbstract: In nanoscale ductile mode cutting of the monocrystalline silicon wafer, micro-, or nano-grooves on the diamond cutting tool flank face are often observed, which is beyond the understanding based on conventional cutting processes because the silicon workpiece material is monocrystalline and the hardness is lower than that of the diamond cutting tool at room temperature. In this study, the mechanism of the groove wear in nanoscale ductile mode cutting of monocrystalline silicon by diamond is investigated by molecular dynamics simulation of the cutting process. The results show that the temperature rise in the chip formation zone could soften the material at the flank face of the diamond cutting tool. Also, the high hydrostatic pressure in the chip formation region could result in the workpiece material phase transformation from monocrystalline to amorphous, in which the material interatomic bond length varies, yielding atom groups of much shorter bond lengths. Such atom groups could be many times harder than that of the original monocrystalline silicon and could act as "dynamic hard particles " in the material. Having the dynamic hard particles ploughing on the softened flank face of the diamond tool, the micro-/nanogrooves could be formed, yielding the micro-/nanogroove wear as observed. read less NOT USED (low confidence) S. Munetoh, T. Motooka, K. Moriguchi, and A. Shintani, “Interatomic potential for Si–O systems using Tersoff parameterization,” Computational Materials Science. 2007. link Times cited: 382 NOT USED (low confidence) J. Zhu et al., “Surface diffusion of carbon atom and carbon dimer on Si(0 0 1) surface,” Applied Surface Science. 2007. link Times cited: 3 NOT USED (low confidence) D. Powell, M. Migliorato, and A. Cullis, “Optimized Tersoff potential parameters for tetrahedrally bonded III-V semiconductors,” Physical Review B. 2007. link Times cited: 64 Abstract: We address the issue of accurate parametrization for the Abe… read moreAbstract: We address the issue of accurate parametrization for the Abell-Tersoff empirical potential applied to tetrahedrally bonded semiconductor materials. Empirical potential methods for structural relaxation are widely used for group IV semiconductors while, with few notable exceptions, work on III-V materials has not been extensive. In the case of the Abell-Tersoff potential parametrizations exist only for III-As and III-N, and are designed to correctly predict only a limited number of cohesive and elastic properties. In this work we show how by fitting to a larger set of cohesive and elastic properties calculated from density functional theory, we are able to obtain parameters for III-As, III-N, III-P, and III-Sb zinc blende semiconductors, which can also correctly predict important nonlinear effects in the strain. read less NOT USED (low confidence) L. Shen and Z. Chen, “A Numerical Study of Combined Rate, Size and Thermal Effects on the Responses of Ultrananocrystalline Diamond,” Key Engineering Materials. 2007. link Times cited: 4 Abstract: To better understand the responses of ultrananocrystalline d… read moreAbstract: To better understand the responses of ultrananocrystalline diamond (UNCD) under extreme working conditions, a numerical study is performed to investigate the size, loading rate and thermal effects on the material properties of UNCD films. A combined kinetic Monte Carlo (KMC) and molecular dynamics (MD) method is first applied to simulate the growth of polycrystalline UNCD films. The responses of the resulting UNCD films with various grain sizes are then investigated by applying displacement–controlled tensile loading with different rates and temperatures in the MD simulations. The preliminary results presented in this paper provide a better understanding of the combined size, rate and thermal effects on the material properties of UNCD. read less NOT USED (low confidence) J. J. Titantah and D. Lamoen, “Carbon and nitrogen 1s energy levels in amorphous carbon nitride systems: XPS interpretation using first-principles,” Diamond and Related Materials. 2007. link Times cited: 113 NOT USED (low confidence) J. Yu, S. Sinnott, and S. Phillpot, “Charge optimized many-body potential for the Si/SiO2 system,” Physical Review B. 2007. link Times cited: 151 Abstract: A dynamic-charge, many-body potential for the Si/SiO{sub 2} … read moreAbstract: A dynamic-charge, many-body potential for the Si/SiO{sub 2} system, based on an extended Tersoff potential for semiconductors, is proposed and implemented. The validity of the potential function is tested for both pure silicon and for five polymorphs of silica, for which good agreement is found between the calculated and experimental structural parameters and energies. The dynamic charge transfer intrinsic to the potential function allows the interface properties to be captured automatically, as demonstrated for the silicon/{beta}-cristobalite interface. read less NOT USED (low confidence) G. V. Kornich, G. Betz, V. Zaporojtchenko, and K. V. Pugina, “Low energy ion bombardment of metal nanoclusters on graphite,” Nuclear Instruments & Methods in Physics Research Section B-beam Interactions With Materials and Atoms. 2007. link Times cited: 4 NOT USED (low confidence) D. Brenner, O. Shenderova, and D. Areshkin, “Quantum‐Based Analytic Interatomic Forces and Materials Simulation.” 2007. link Times cited: 21 NOT USED (low confidence) S. Bukkapatnam, M. Malshe, P. Agrawal, L. Raff, and R. Komanduri, “Parametrization of interatomic potential functions using a genetic algorithm accelerated with a neural network,” Physical Review B. 2006. link Times cited: 17 NOT USED (low confidence) J. Pezoldt, Y. Trushin, V. Kharlamov, A. Schmidt, V. Cimalla, and O. Ambacher, “Carbon surface diffusion and SiC nanocluster self-ordering,” Nuclear Instruments & Methods in Physics Research Section B-beam Interactions With Materials and Atoms. 2006. link Times cited: 5 NOT USED (low confidence) B.-M. Lee, B. Seong, H.-R. Kim, S. Munetoh, and T. Motooka, “Cooling Mechanism and Structural Change of Local Regions With a Different Cooling Rate of Excimer Laser Annealed Si.” 2006. link Times cited: 0 NOT USED (low confidence) X. Han, “Investigation of Surface Integrity in the Case of Chemical Mechanical Polishing Silicon Wafer by Molecular Dynamics Simulation Method,” International Symposium on Information, Communication and Automation Technologies. 2006. link Times cited: 0 NOT USED (low confidence) E. Halac, A. Dall’Asén, E. Burgos, and M. Reinoso, “Carbon Films Obtained from Fullerenes Deposited on Germanium: Experimental and Simulated Results,” Physical Review B. 2006. link Times cited: 5 NOT USED (low confidence) M. Aly, E. Ng, S. Veldhuis, and M. Elbestawi, “Prediction of cutting forces in the micro-machining of silicon using a ‘hybrid molecular dynamic-finite element analysis’ force model,” International Journal of Machine Tools & Manufacture. 2006. link Times cited: 31 NOT USED (low confidence) K. Gärtner, “MD simulation of ion implantation damage in AlGaAs: I. Displacement energies,” Nuclear Instruments & Methods in Physics Research Section B-beam Interactions With Materials and Atoms. 2006. link Times cited: 9 NOT USED (low confidence) C. R. Miranda, K. V. Tretiakov, and S. Scandolo, “A computational study of elastic properties of disordered systems with voids,” Journal of Non-crystalline Solids. 2006. link Times cited: 9 NOT USED (low confidence) V. Zinovyev, G. Vastola, F. Montalenti, and L. Miglio, “Accurate and analytical strain mapping at the surface of Ge/Si(001) islands by an improved flat-island approximation,” Surface Science. 2006. link Times cited: 15 NOT USED (low confidence) A. Schmidt et al., “Multi-Scale Simulation of MBE-Grown SiC/Si Nanostructures,” Materials Science Forum. 2006. link Times cited: 3 Abstract: The main obstacle for the implementation of numerical simula… read moreAbstract: The main obstacle for the implementation of numerical simulation for the prediction of the epitaxial growth is the variety of physical processes with considerable differences in time and spatial scales taking place during epitaxy: deposition of atoms, surface and bulk diffusion, nucleation of two-dimensional and three-dimensional clusters, etc. Thus, it is not possible to describe all of them in the framework of a single physical model. In this work there was developed a multi-scale simulation method for molecular beam epitaxy (MBE) of silicon carbide nanostructures on silicon. Three numerical methods were used in a complex: Molecular Dynamics (MD), kinetic Monte Carlo (KMC), and the Rate Equations (RE). MD was used for the estimation of kinetic parameters of atoms at the surface, which are input parameters for other simulation methods. The KMC allowed the atomic-scale simulation of the cluster formation, which is the initial stage of the SiC growth, while the RE method gave the ability to study the growth process on a longer time scale. As a result, a full-scale description of the surface evolution during SiC formation on Si substrates was developed. read less NOT USED (low confidence) J. Rino, P. S. Branicio, and D. Borges, “Classical Molecular Dynamics Simulation of Structural and Dynamical Properties of II-VI and III-V Semiconductors,” Defect and Diffusion Forum. 2006. link Times cited: 2 Abstract: An effective inter-atomic potential is proposed in order to … read moreAbstract: An effective inter-atomic potential is proposed in order to describe structural and dynamical properties of II-VI and III-V semiconductors. The interaction potential consists of twoand three-body interactions. The two-body term takes into account steric repulsion, charge-induce dipole interaction due to the electronic polarizability of ions, Coulomb interaction due to charge transfer between ions, and dipole-dipole (van der Waals) interactions. The three-body term, which has a modified Stillinger-Weber form, describes bond-bending as well as bond-stretching effects. Here we report the fitting and the application of this interaction potential for InP in the crystalline phase and for CdTe in the crystalline and liquid phases. The structural correlations are discussed through pair distribution, coordination number and bond-angle functions. Vibrational density of states for InP and CdTe as well as the static structure factor for liquid CdTe are in very good agreement with experimental data. read less NOT USED (low confidence) M. Finnis and M. Rühle, “Structures of Interfaces in Crystalline Solids,” Materials Science and Technology. 2006. link Times cited: 3 Abstract: Interfaces in materials may be grain boundaries between like… read moreAbstract: Interfaces in materials may be grain boundaries between like crystals or phase boundaries between unlike crystals. Experimental approaches for the determination of the atomic structures of the interfaces are reviewed with emphasis on high-resolution electron microscopy (HREM). It will be shown that information on orientation relationship between the adjacent grains, the translation state and atomic relaxations can be elaborated with high precision. In a case study, the structures of one specific grain boundary in Al2O3 will be discussed in detail. Such experimental studies have provided a mass of structural information in recent years. read less NOT USED (low confidence) B.-M. Lee, S. Munetoh, and T. Motooka, “Molecular dynamics study of velocity distribution and local temperature change during rapid cooling processes in excimer-laser annealed silicon,” Computational Materials Science. 2006. link Times cited: 11 NOT USED (low confidence) J. Wang and J.-S. Wang, “Mode-dependent energy transmission across nanotube junctions calculated with a lattice dynamics approach,” Physical Review B. 2006. link Times cited: 26 Abstract: A generalized scattering boundary equation method SBM is pro… read moreAbstract: A generalized scattering boundary equation method SBM is proposed for the calculation of the vibrational amplitude transmission across solid junctions. An energy transmission expression with relation to atomic masses, lattice constants, and group velocities is elucidated. The phonon transmission is computed by the SBM for an 11,0–8,0 nanotube junction. The strongly mode-dependent energy transmission observed can be ascribed to the mismatch in symmetry of the vibrational motions, indicating its possibly important role in thermal transport in nanotubes. read less NOT USED (low confidence) M. Seta et al., “Spontaneous Ge island ordering promoted by partial silicon capping,” Materials Science in Semiconductor Processing. 2006. link Times cited: 0 NOT USED (low confidence) P. Śpiewak et al., “Simulation of intrinsic point defect properties and vacancy clustering during Czochralski germanium crystal growth,” Materials Science in Semiconductor Processing. 2006. link Times cited: 8 NOT USED (low confidence) U. Kaiser and A. Chuvilin, “Prospects of the multislice method for CBED pattern calculation,” International Journal of Materials Research. 2006. link Times cited: 2 Abstract: We recently showed that the Multisclice method can be used t… read moreAbstract: We recently showed that the Multisclice method can be used to elucidate the crystal volume contribution to a CBED pattern. Here, we demonstrate in more detail how the directions of each HOLZ line, their Laue zone order, and the specimen thickness determine the volume segment of the Bragg scattering cone of the electron beam and show that secondary rescattering from this volume must take place for deficient line formation in the (000) CBED disk. Moreover, additional prospects of the multislice method are demonstrated such as calculation of line splitting in bent crystals, hollow cone dark-field CBED, large-angle CBED, and whole diffraction patterns including Kikuchi lines. read less NOT USED (low confidence) H.-jun Shen, “The compressive mechanical properties of C60 and endohedral M@C60 (M=Si, Ge) fullerene molecules,” Materials Letters. 2006. link Times cited: 20 NOT USED (low confidence) V. Belko and A. Kuznetsov, “Frenkel pair accumulation in ion- and electron-irradiated SiC,” Nuclear Instruments & Methods in Physics Research Section B-beam Interactions With Materials and Atoms. 2006. link Times cited: 3 NOT USED (low confidence) Y. Tang, J. Wang, and X. Zeng, “Molecular simulations of solid-liquid interfacial tension of silicon.,” The Journal of chemical physics. 2006. link Times cited: 24 Abstract: Using the superheating method [Luo et al., Phys. Rev. B68, 1… read moreAbstract: Using the superheating method [Luo et al., Phys. Rev. B68, 134206 (2003)], we deployed classical molecular dynamics (MD) simulation to compute solid-liquid interfacial tension of silicon. We performed isobaric-isothermal MD simulation on two silicon models, the Stillinger-Weber [Phys. Rev. B31, 5262 (1985)] and Tersoff-89 [Phys. Rev. B38, 5565 (1989)], and applied heating rates of 1×1011 and 5×1011K∕s to the system. The calculated average value of solid-liquid surface tension of silicon is 0.413J∕m2, which is in good agreement with the measured values (0.34–0.40J∕m2). read less NOT USED (low confidence) A. Valladares, R. Valladares, F. Alvarez-Ramírez, and A. A. Valladares, “Studies of the phonon density of states in ab initio generated amorphous structures of pure silicon,” Journal of Non-crystalline Solids. 2006. link Times cited: 11 NOT USED (low confidence) I. Belabbas, P. Ruterana, J. Chen, and G. Nouet, “The atomic and electronic structure of dislocations in Ga-based nitride semiconductors,” Philosophical Magazine. 2006. link Times cited: 18 Abstract: The atomic and electronic properties of dislocations in III–… read moreAbstract: The atomic and electronic properties of dislocations in III–N semiconductor layers, especially GaN, are presented. The atomic structure of the edge threading dislocation is now well established with three different cores (8 or full core, 5/7 or open core, and 4-atom ring). The use of atomistic simulations has confirmed these atomic structures and has given a good understanding of the electronic structure of the screw dislocation. Partial dislocations which are mostly confined in the area close to the substrate are now also being investigated. It is becoming clear that the electrical activity of all these defects is dependent on the layer quality, which is governed by the growth conditions. read less NOT USED (low confidence) I. Todorov, I. Todorov, W. A. P. Smith, K. Trachenko, and M. T. Dove, “DL_POLY_3: new dimensions in molecular dynamics simulations via massive parallelism,” Journal of Materials Chemistry. 2006. link Times cited: 87 Abstract: DL_POLY_3 is a general-purpose massively parallel molecular … read moreAbstract: DL_POLY_3 is a general-purpose massively parallel molecular dynamics simulation package embedding a highly efficient set of methods and algorithms such as: Domain Decomposition (DD), Linked Cells (LC), Daresbury Advanced Fourier Transform (DAFT), Trotter derived Velocity Verlet (VV) integration and RATTLE. Written to support academic research, it has a wide range of applications and can run on a wide range of computers; from single processor workstations to multi-processor computers. The code development has placed particular emphasis on the efficient utilization of multi-processor power by optimised memory workload and distribution, which makes it possible to simulate systems of the order of tens of millions of particles and beyond. In this paper we discuss the new DL_POLY_3 design, and report on the performance, capability and scalability. We also discuss new features implemented to simulate highly non-equilibrium processes of radiation damage and analyse the structural damage during such processes. read less NOT USED (low confidence) A. Bolesta, I. Golovnev, and V. Fomin, “InGaAs/GaAs nanotubes simulation: Comparison between continual and molecular dynamics approaches,” Computational Materials Science. 2006. link Times cited: 10 NOT USED (low confidence) D. Powell, M. Migliorato, and A. Cullis, “The Tersoff potential for phonons in GaAs,” Physica E-low-dimensional Systems & Nanostructures. 2006. link Times cited: 14 NOT USED (low confidence) S. Billeter, A. Curioni, D. Fischer, and W. Andreoni, “Ab initio derived augmented Tersoff potential for silicon oxynitride compounds and their interfaces with silicon,” Physical Review B. 2006. link Times cited: 42 Abstract: Coordination-dependent interatomic potentials are proposed f… read moreAbstract: Coordination-dependent interatomic potentials are proposed for silicon oxides and oxynitrides\char22{}also hydrogenated ones\char22{}with a functional form based on the widely used Tersoff silicon potential. They are intended for an accurate sampling of the configurational space of realistic silicon oxynitride systems and their interfaces with silicon, including defects and changes of oxidation states. The parameters, which are given in the text, are obtained by simultaneously mapping forces and energies onto the results of density-functional-theory calculations performed for a set of diverse systems and configurations and a wide composition range. Application to a larger set of systems and configurations shows the transferability of these augmented Tersoff potentials and their validity in predicting bulk lattice parameters, energetics of defect relaxation, and vibrational spectra. read less NOT USED (low confidence) W. Moon and C. H. Choi, “Molecular-dynamics study of inversion domain boundary in w-GaN,” Physics Letters A. 2006. link Times cited: 7 NOT USED (low confidence) J. S. Kim, S. Park, J. H. Park, and J. S. Lee, “Molecular Dynamics Simulation of Elastic Properties of Silicon Nanocantilevers,” Nanoscale and Microscale Thermophysical Engineering. 2006. link Times cited: 13 Abstract: The molecular dynamics simulation of nanoscale cantilevers m… read moreAbstract: The molecular dynamics simulation of nanoscale cantilevers made of pure crystalline silicon with different lattice conditions is presented. Young's moduli for various sized specimen is obtained by simulating clamped-free cantilever beam vibrations and static tensile responses. Young's modulus decreases monotonically as the thickness of the specimen decreases. Although significant discrepancies exist between the simulated and experimentally determined Young's modulus, incorporating a minute amount of voids in the specimen during simulation offers a partial account of this discrepancy. The dependence of the Young's modulus on dimensional scaling is then applied to estimate thermal fluctuations of the cantilever under various temperatures, sizes, and lattice conditions and shows excellent agreement with the theoretical estimate based on the equipartition theorem. Finally, the applicability of the nanocantilevers as molecular mass sensors is demonstrated by simulating the change in the first flexural mode frequency as the number of silicon molecules placed at the tip of the cantilever is varied. The results show good agreement with the theoretical predictions of the Euler-Bernoulli beam vibration model. read less NOT USED (low confidence) J. W. Kang, O. Kwon, J.-H. Lee, Q. Jiang, and H. Hwang, “Molecular dynamics study of carbon nanotube oscillator on gold surface,” Molecular Simulation. 2006. link Times cited: 7 Abstract: We investigated the substrate effect of carbon nanotube (CNT… read moreAbstract: We investigated the substrate effect of carbon nanotube (CNT) oscillators using classical molecular dynamics simulations. Double-walled CNT oscillators on {100} gold surface were considered. The nanotube–gold interactions induced the compressive deformations of the outer nanotube and affected the transitional velocity and the energy dissipation of the nanotube oscillator. When the inner nanotube was extruded from the outer nanotube, the central regions of the outer nanotube were compressed by the nanotube–gold interactions and then, these compressive forces pushed out the inner nanotube and finally, the transitional velocity of the inner nanotube was slightly increased at the edges regions. Since the energy dissipation of the nanotube oscillator on gold surface was higher than that in vapor, the decrease of the transitional velocity for the nanotube oscillator on gold surface was greater than that for the nanotube oscillator in vapor. read less NOT USED (low confidence) L. Shen and Z. Chen, “A Numerical Study of the Size and Rate Effects on the Mechanical Response of Single Crystal Diamond and UNCD Films,” International Journal of Damage Mechanics. 2006. link Times cited: 23 Abstract: To better understand the mechanical response of ultrananocry… read moreAbstract: To better understand the mechanical response of ultrananocrystalline diamond (UNCD) and its grain boundary mechanism, a numerical study is performed of the specimen size and rate effects on the mechanical properties of single crystal diamond and UNCD films under uniaxial and shear loading paths, respectively. To compare with the UNCD films, single crystal diamond blocks of various sizes under tensile loading in the 100 hi direction and shear loading with the {100} 110 hi slip at different rates are first investigated via the molecular dynamics (MD) simulation. A combined kinetic Monte Carlo (KMC) and MD procedure is then developed for large-scale atomistic simulation of the mechanical response of UNCD films. In this numerical procedure, two single crystal diamond films, that are formed by the KMC method based on the mechanisms of UNCD growth from carbon dimers on the hydrogen-free (001) surface, are compressed along the [001] direction with two growth surfaces contacting each other at an elevated temperature in the MD simulation to create a polycrystalline UNCD film with certain grain boundary. The mechanical response of the resulting UNCD film is investigated by applying displacement-controlled shear loading in the MD simulation, and is compared with that of single crystal diamond. The preliminary results presented in this article provide a better understanding of the size and rate effects on the material properties of diamond and the role played by the grain boundary on influencing the mechanical response of UNCD films. read less NOT USED (low confidence) C. Moore, C. Retford, M. Beck, M. Asta, M. Miksis, and P. Voorhees, “Orientation dependence of strained-Ge surface energies near (001): role of dimer-vacancy lines and their interactions with steps.,” Physical review letters. 2006. link Times cited: 10 Abstract: Recent experiments and calculations have highlighted the imp… read moreAbstract: Recent experiments and calculations have highlighted the important role of surface-energy (gamma) anisotropy in governing island formation in the Ge/Si(001) system. To further elucidate the factors determining this anisotropy, we perform atomistic and continuum calculations of the orientation dependence of gamma for strained-Ge surfaces near (001), accounting for the presence of dimer-vacancy lines (DVLs). The net effect of DVLs is found to be a substantial reduction in the magnitude of the slope of gamma vs orientation angle, relative to the highly negative value derived for non-DVL, dimer-reconstructed, strained-Ge(001) surfaces. The present results thus point to an important role of DVLs in stabilizing the (001) surface orientation of a strained-Ge wetting layer. read less NOT USED (low confidence) S. Nakagawa, M. Iwatani, and G. Betz, “A Coalescence Mechanism of Impurity Atoms Implanted into a Crystalline Target at Low Temperatures(Condensed Matter : Structure, Mechanical and Thermal Properties),” Journal of the Physical Society of Japan. 2006. link Times cited: 4 Abstract: We have studied the coalescence mechanism of impurity atoms … read moreAbstract: We have studied the coalescence mechanism of impurity atoms implanted into a crystalline target at low temperatures, paying attention to the dimer formation mechanism. A classical molecular-dynamics (MD) calculations was used in the case of 1 keV B ion implantation at 100 K into a crystalline silicon (c-Si) target that was supersaturated with pre-embedded B atoms at a concentration of 3 at. %. The initial phase of dimer formation was investigated in terms of the temperature distribution and the degradation of the long-range order (LRO) parameters defined in the pixel mapping (PM) method. One result was the locally high temperature and big temperature gradient that revealed the acceleration of collisional diffusion of light impurity atoms in the host medium. The other finding was the decrease of the LRO parameters. This fact associated with the number of self-interstitial atoms (SIAs) implies a deformed potential-field in a crystal under ion irradiation. These results indicate that dynamically enhanced diffusion or collisional-diffusion is the origin of dimer formation. read less NOT USED (low confidence) X. Guo, D. Guo, R. Kang, and Z. Jin, “Molecular Dynamics Analyze on Effects of Abrasive Size and Cut Depth on the Monocrystal Silicon Grinding,” Key Engineering Materials. 2006. link Times cited: 5 Abstract: Molecular dynamics (MD) simulation is carried out to analyze… read moreAbstract: Molecular dynamics (MD) simulation is carried out to analyze the effects of abrasive ngrain size and cut depth on monocrystal silicon grinding process. Tersoff potential is used to describe the interactions of diamond and silicon atoms. Based on classical Newtonian mechanics law, the motion equations of atoms are established and the trajectory of each atom in phase space is obtained with the aid of Velocity Verlet algorithm. Debye model is introduced to convert between kinetic energy and temperature of an atom. The grinding processes of by single grain with different size and different cut depth are investigated in atomic space. Through comparing shearing force and potential energy in the single grain grinding process, the effects of cut depth and grain size on the grinding process are discussed. From the results of MD simulation, it is revealed that when the cut depth increases, both the shearing force in silicon crystal and potential energy between the silicon atoms rise, deformation and dislocations in the silicon lattices increase. As a result, all theses lead to^more severe surface and subsurface damage. With the decreasing of grain size in the same cut-depth nanometric grinding processes, the shearing force in silicon crystal and potential energy between the silicon atoms become larger, deformation and dislocations in the silicon lattices increase. read less NOT USED (low confidence) R. Marchetti, F. Montalenti, L. Miglio, G. Capellini, M. Seta, and F. Evangelisti, “Strain-induced ordering of small Ge islands in clusters at the surface of multilayered Si-Ge nanostructures,” Applied Physics Letters. 2005. link Times cited: 32 Abstract: Classical molecular-dynamics simulations based on the Tersof… read moreAbstract: Classical molecular-dynamics simulations based on the Tersoff potential are used to compute at the atomic level the strain-induced potential well generated at the surface of the capping layer by a buried, three-dimensional Ge island on Si(001). A simple model is outlined in order to predict the configurational arrangement for the nucleation of small Ge islands in such a potential well. The theoretical predictions are compared with atomic force microscope images of multilayered SiGe nanostructures grown by chemical vapor deposition. The cluster configuration is shown to be strongly dependent on the capping layer thickness, and to closely mimic the behavior predicted by the model. read less NOT USED (low confidence) D. Tambe, C. Ciobanu, and V. Shenoy, “Self-assembly of steps and vacancy lines during the early stages of Ge∕Si(001) heteroepitaxy,” Applied Physics Letters. 2005. link Times cited: 1 Abstract: The wetting layer formed during the early stages of Ge∕Si(00… read moreAbstract: The wetting layer formed during the early stages of Ge∕Si(001) growth has been found in recent experiments to undergo a roughening process, where the SA surface steps affect the spatial organization of vacancy lines (VLs) by increasing (stretching) or decreasing (squeezing) their average spacing. Using a combination of atomistic simulations and elastic theory of surface defects, we have computed the interaction energy of the SA steps and VLs for each of the observed defect configurations. We find that the repulsive SA-VL interactions lead to an increase in the spacing of the VLs in the “stretch” arrangement, but do not significantly affect the VL spacing in the “squeeze” configuration, providing an explanation for the observed correlations in the wetting layer roughness. read less NOT USED (low confidence) J. Biskupek, U. Kaiser, and K. Gärtner, “Matrix-dependent structure of GeSi nanocrystals in SiC.,” Journal of electron microscopy. 2005. link Times cited: 4 Abstract: It is shown experimentally that GeSi nanocrystals in SiC cre… read moreAbstract: It is shown experimentally that GeSi nanocrystals in SiC created after high-dose Ge ion implantation and high-temperature annealing are hexagonal in a hexagonal 4H-SiC matrix and are of cubic structure in a cubic 3C-SiC matrix. This interesting fact could be explained by molecular dynamics as the force of the system nanocrystal-matrix to minimize its interface energy. read less NOT USED (low confidence) R. Hayashi, K. Tanaka, S. Horiguchi, and Y. Hiwatari, “A Parallelization Case-study of Md Simulation of a Low Density Physical System,” Parallel Process. Lett. 2005. link Times cited: 1 Abstract: A case study on the parallelization of a classical molecular… read moreAbstract: A case study on the parallelization of a classical molecular dynamics code for simulating the formation of carbon clusters is presented. Parallelization is based on the domain decomposition method, as the Tersoff potentials used are short-range. However, at low particle densities, high-performance parallel execution of MD simulations is quite difficult. Methods for improving the performance achieved by parallelization of low density MD simulations are discussed and initial results for a low density system are presented. read less NOT USED (low confidence) J. Kang and H. Hwang, “Schematics and simulations of nanomemory device based on nanopeapods,” Materials Science and Engineering: C. 2005. link Times cited: 16 NOT USED (low confidence) S. Park, J. S. Kim, J. Park, J.-S. Lee, Y. Choi, and O. Kwon, “Molecular dynamics study on size-dependent elastic properties of silicon nanocantilevers,” Thin Solid Films. 2005. link Times cited: 86 NOT USED (low confidence) D. Murdick, X. W. Zhou, and H. Wadley, “Assessment of interatomic potentials for molecular dynamics simulations of GaAs deposition,” Physical Review B. 2005. link Times cited: 22 Abstract: Computational studies of atomic assembly processes during Ga… read moreAbstract: Computational studies of atomic assembly processes during GaAs vapor deposition require interatomic potentials that are able to reasonably predict the structures and energies of a molecular arsenic vapor, a variety of elemental gallium and arsenic lattices, binary GaAs lattices, GaAs lattice defects, and 001 GaAs surfaces. These properties were systematically evaluated and compared to ab initio and experimental data for one Tersoff and two Stillinger-Weber SW GaAs interatomic potentials. It was observed that bulk and arsenic molecular properties calculated by the Tersoff parametrization matched density functional predictions and experimental observations significantly better than either of the SW parametrizations. These trends can be related to the bonding physics included in each potential format. Surface free energy calculations indicate that none of these potentials correctly predict the low-energy surface reconstructions of the GaAs 001 surface. Simulated As2 molecular bonding with gallium-rich GaAs 001 surfaces indicate a high sticking probability for SW potentials, which is in good agreement with experimental observations at low growth temperatures. However, the Tersoff parametrization resulted in an unphysically high desorption probability for As2 over a wide range of surface temperatures. read less NOT USED (low confidence) C. Lang, D. Cockayne, and D. Nguyen-Manh, “AlloyedGe(Si)∕Si(001)islands: The composition profile and the shape transformation,” Physical Review B. 2005. link Times cited: 32 NOT USED (low confidence) R. Santoprete, P. Kratzer, M. Scheffler, R. Capaz, and B. Koiller, “Effect of post-growth annealing on the optical properties of InAs/GaAs quantum dots: A tight-binding study,” Journal of Applied Physics. 2005. link Times cited: 14 Abstract: We present an atomistic study of the strain field, the one-p… read moreAbstract: We present an atomistic study of the strain field, the one-particle electronic spectrum and the oscillator strength of the fundamental optical transition in chemically disordered InxGa1−xAs pyramidal quantum dots (QDs). Interdiffusion across the interfaces of an originally “pure” InAs dot buried in a GaAs matrix is simulated through a simple model, leading to atomic configurations where the abrupt heterointerfaces are replaced by a spatially inhomogeneous composition profile x. Structural relaxation and the strain field calculations are performed through the Keating valence force field model, while the electronic and optical properties are determined within the empirical tight-binding approach. We analyze the relative impact of two different aspects of the chemical disorder, namely: (i) the effect of the strain relief inside the QD, and (ii) the purely chemical effect due to the group-III atomic species interdiffusion. We find that these effects may be quantitatively comparable, significantly affecting th... read less NOT USED (low confidence) C. Ciobanu, A. Barbu, and R. Briggs, “Interactions of Carbon Atoms and Dimer Vacancies on the Si(001) Surface,” Journal of Engineering Materials and Technology-transactions of The Asme. 2005. link Times cited: 2 Abstract: We investigate the interactions between substitutional carbo… read moreAbstract: We investigate the interactions between substitutional carbon atoms on the defect free, (2×1) reconstructed Si(001) surface, and bring evidence that the interaction energy differs significantly from the inverse-cube distance dependence that is predicted by the theory of force dipoles on an elastic half-space. Bused on Tersoff potentials, we also calculate the interactions between carbon atoms and dimer vacancies. The calculations indicate that dimer vacancies (DVs) are strongly stabilised by fourth-layer C atoms placed directly underneath them. By use of simple model Monte Carlo simulations, we show that the computed interactions between carbon atoms and DVs lead to self-assembled vacancy lines, in qualitative agreement with recent experimental results. read less NOT USED (low confidence) P. Erhart and K. Albe, “Molecular Dynamics Simulations of Gas Phase Condensation of Silicon Carbide Nanoparticles,” Advanced Engineering Materials. 2005. link Times cited: 12 Abstract: Gas phase condensation of silicon and silicon carbide nanopa… read moreAbstract: Gas phase condensation of silicon and silicon carbide nanoparticles is studied by molecular-dynamics simulations. By using a recently developed bond-order potential for Si, C and SiC we investigate the fundamental processes governing nucleation and growth of SiC nanoparticles. For the case of elemental silicon particles we show that variations in the binding energy of dimers, which represent stable nuclei for the condensation process, significantly affect the long time evolution of the cluster formation process. A detailed analysis of the molecular reactions during the early stages of SiC particle growth is presented. Reactions, in which silicon monomers are formed, are dominant in case of stoichiometric composition of the precursor gas. Moreover, we find the formation of carbon-dominated species to be preferred and a sensitive dependence of the particle composition and morphology on the processing conditions, especially the cooling and precursor gas composition. read less NOT USED (low confidence) M. Ippolito, A. Mattoni, L. Colombo, and F. Cleri, “Fracture toughness of nanostructured silicon carbide,” Applied Physics Letters. 2005. link Times cited: 16 Abstract: By using atomistic simulations, we derive a constitutive equ… read moreAbstract: By using atomistic simulations, we derive a constitutive equation for a microfractured β-SiC matrix containing hard or soft inclusions. The proposed equation is shown to follow the Eshelby theory for elastic inclusions, and appears to hold for any crack tip-inclusion distance and for a wide range of values of matrix-inclusion elastic mismatch. A comparison of the atomistic results with existing continuum elasticity models points out the weaknesses of some commonly adopted simplifying assumptions. read less NOT USED (low confidence) R. Wagner and E. Gulari, “Thermodynamic control of germanium quantum dot growth on silicon,” Surface Science. 2005. link Times cited: 5 NOT USED (low confidence) J. Ma, D. Huo, and F. Cui, “Simulation study on radius dependence in rare-gas atoms injection into single-wall carbon nanotubes,” Nuclear Instruments & Methods in Physics Research Section B-beam Interactions With Materials and Atoms. 2005. link Times cited: 0 NOT USED (low confidence) H. Hwang, K. Byun, J. Y. Lee, and J. Kang, “A nanoscale field effect data storage of bipolar endo-fullerenes shuttle device,” Current Applied Physics. 2005. link Times cited: 10 NOT USED (low confidence) B. Yang and V. Tewary, “Green’s function-based multiscale modeling of defects in a semi-infinite silicon substrate,” International Journal of Solids and Structures. 2005. link Times cited: 14 NOT USED (low confidence) P. Süle, “Substrate induced enhancement of atomic layer growth on Al(1 1 1): The effect of the mass anisotropy,” Surface Science. 2005. link Times cited: 4 NOT USED (low confidence) R. Li, “A molecular dynamics study of boron and nitrogen in diamond,” Solid State Communications. 2005. link Times cited: 10 NOT USED (low confidence) M. Ishimaru, I. Bae, A. Hirata, Y. Hirotsu, J. Valdez, and K. Sickafus, “Volume swelling of amorphous SiC during ion-beam irradiation,” Physical Review B. 2005. link Times cited: 40 Abstract: Relationships between chemical short-range order and volume … read moreAbstract: Relationships between chemical short-range order and volume swelling of amorphous silicon carbide (SiC) under radiation environments have been examined using energy-filtering transmission electron microscopy in combination with imaging plate techniques. Single crystals of 4H-SiC with (0001) orientation were irradiated with 300 keV xenon ions to a fluence of 10{sup 15} cm{sup -2} at cryogenic (120 K) and elevated (373 K) temperatures. A continuous amorphous layer was formed in both specimens, but the magnitude of their volume change was different: volume swelling becomes more pronounced with decreasing irradiation temperatures. From radial distribution function analyses, it was found that the amount of Si-Si atomic pairs increases more rapidly than that of C-C atomic pairs with the progress of chemical disordering. We discuss the ion-beam-induced swelling in amorphous SiC within the context of our results as well as previous observations. read less NOT USED (low confidence) E. M. Tammar, P. Sonnet, L. Stauffer, and P. Kelires, “General trends of the carbon penetration in Si(001) surfaces,” Solid State Communications. 2005. link Times cited: 1 NOT USED (low confidence) K. Byun, J. Kang, and H. Hwang, “A study on nanotube–substrate interaction effect for fullerene-shuttle-memory based on nanopeapod,” Physica E-low-dimensional Systems & Nanostructures. 2005. link Times cited: 8 NOT USED (low confidence) T. Iwasaki, “Molecular-dynamics study of interfacial diffusion between high-permittivity gate dielectrics and germanium substrates,” Journal of Materials Research. 2005. link Times cited: 4 Abstract: The stability of interfaces with germanium, which has recent… read moreAbstract: The stability of interfaces with germanium, which has recently been discussed as a replacement for silicon in ultra-large-scale integrated circuits (ULSIs), was studied. Interfacial oxygen diffusion from high-permittivity gate dielectrics (ZrO_2 and HfO_2) into germanium substrates must be suppressed to prevent the formation of interfacial layers between the gate dielectrics and the germanium substrates. Oxygen diffusion was simulated through a molecular-dynamics technique that takes into account many-body interactions and charge transfer between different elements. The simulation results show that the addition of yttrium is effective in suppressing interfacial oxygen diffusion at the ZrO_2/germanium interfaces. On the other hand, the addition of yttrium is not effective in suppressing interfacial oxygen diffusion at the HfO_2/germanium interfaces. The results also show that the diffusion at the ZrO_2/Ge(111) and HfO_2/Ge(111) interfaces is much more suppressed than the diffusion at the ZrO_2/Ge(001) and HfO_2/Ge(001) interfaces. read less NOT USED (low confidence) S. G. Mayr and R. Averback, “Ion-irradiation-induced stresses and swelling in amorphous Ge thin films,” Physical Review B. 2005. link Times cited: 33 Abstract: Mechanical stresses and morphology during growth and ion bom… read moreAbstract: Mechanical stresses and morphology during growth and ion bombardment of amorphous Ge thin films are investigated by a combination of in situ stress measurements and molecular dynamics computer simulations. Strong compressive stresses are generated during irradiation that subsequently lead to severe swelling. The simulations indicate that interstitial-mediated viscous flow in combination with well-localized vacancy defects are the main ingredients responsible for the observed phenomena. read less NOT USED (low confidence) J. Kang, J. H. Lee, H.-J. Lee, and H. Hwang, “A study on carbon nanotube bridge as a electromechanical memory device,” Physica E-low-dimensional Systems & Nanostructures. 2005. link Times cited: 31 NOT USED (low confidence) J. Kang and H. Hwang, “Carbon nanotube shuttle memory device based on singlewall-to-doublewall carbon nanotube transition,” Computational Materials Science. 2005. link Times cited: 9 NOT USED (low confidence) H. Hwang, W. Choi, and J. Kang, “Molecular dynamics simulations of nanomemory element based on boron-nitride nanotube-to-peapod transition,” Computational Materials Science. 2005. link Times cited: 11 NOT USED (low confidence) J. Kang, K. Byun, K. Song, and H. Hwang, “Carbon-nanotube-based nanoelectromechanical switch,” SPIE Micro + Nano Materials, Devices, and Applications. 2005. link Times cited: 55 Abstract: A nanoelectromechanical model based on atomistic simulations… read moreAbstract: A nanoelectromechanical model based on atomistic simulations including charge transfer was investigated. Classical molecular dynamics method combined with continuum electric models could be applied to a carbon-nanotube nanoelectromechanical memory device that could be characterized by carbon-nanotube bending performance by atomistic capacitive and interatomic forces. The capacitance of the carbon atom was changed with the height of the carbon atom. We performed MD simulations for a suspended (5,5) carbon-nanotube-bridge with the length of 11.567 nm (LCNT) and the depth of the trench of 0.9 ~ 1.5 nm (H). After the carbon-nanotube collided on the gold surface, the carbon-nanotube-bridge oscillated on the gold surface with amplitude of ~1 Å, and the amplitude gradually decreased. When H ≤ 1.3 nm, the carbon-nanotube-bridge continually contacted with the gold surface after the first collision. When H ≥ 1.4 nm, the carbon-nanotube-bridge stably contacted with the gold surface after several rebounds. As H increased, the threshold voltage linearly increased. As the applied bias increased, the transition time exponentially decreased at each trench depth. When H / LCNT was below 0.13, the carbon-nanotube nanoelectromechanical memories were permanent nonvolatile memory devices, whereas the carbon-nanotube nanoelectromechanical memories were volatile memory or switching devices when H / LCNT was above 0.14. The turn-on voltages and tunneling resistances obtained from our simulations are compatible to those obtained from previous experimental and theoretical results. read less NOT USED (low confidence) J. Kang and H. Hwang, “Model schematics of a nanoelectronic device based on multi-endo-fullerenes electromigration,” Physica E-low-dimensional Systems & Nanostructures. 2005. link Times cited: 17 NOT USED (low confidence) Y. Jeng, P. Tsai, and T. Fang, “Effects of temperature, strain rate, and vacancies on tensile and fatigue behaviors of silicon-based nanotubes,” Physical Review B. 2005. link Times cited: 32 Abstract: This paper adopts the Tersoff-Brenner many-body potential fu… read moreAbstract: This paper adopts the Tersoff-Brenner many-body potential function to perform molecular dynamics simulations of the tensile and fatigue behaviors of hypothetical silicon-based tubular nanostructures at various temperatures, strain rates, and vacancy percentages. The tensile test results indicate that with a predicted Young's modulus of approximately $60\phantom{\rule{0.3em}{0ex}}\mathrm{GPa}$, silicon nanotubes $(\mathrm{SiNTs})$ are significantly less stiff than conventional carbon nanotubes. It is observed that the presence of hydrogen has a significant influence on the tensile strength of $\mathrm{SiNTs}$. Additionally, the present results indicate that the tensile strength clearly decreases with increasing temperature and with decreasing strain rate. Moreover, it is shown that the majority of the mechanical properties considered in the present study decrease with an increasing vacancy percentage. Regarding the fatigue tests, this study uses a standard theoretical model to derive curves of amplitude stress versus number of cycles for the current nanotubes. The results demonstrate that the fatigue limit of $\mathrm{SiNTs}$ increases with a decreasing vacancy percentage and with increasing temperature. read less NOT USED (low confidence) J. Kang and H. Hwang, “‘Carbon nanotube shuttle’ memory device,” Carbon. 2004. link Times cited: 26 NOT USED (low confidence) J. Kim, B. Lee, H. Nam, and D. Kwon, “Effect of substrate temperature on structure and intrinsic stress in vapor-deposited amorphous silicon carbide film,” Thin Solid Films. 2004. link Times cited: 2 NOT USED (low confidence) F. Cui, J. Ma, D. Huo, and Z. Chen, “Computer simulation of rare-gas atoms injection into single-wall carbon nanotube,” Physics Letters A. 2004. link Times cited: 3 NOT USED (low confidence) X. Hu, Y. Dai, H. Shen, and X. He, “Molecular dynamics simulation on boron diffusion in diamond,” Solid State Communications. 2004. link Times cited: 5 NOT USED (low confidence) Y. Jeng, P. Tsai, and T. Fang, “Effects of temperature and vacancy defects on tensile deformation of single-walled carbon nanotubes,” Journal of Physics and Chemistry of Solids. 2004. link Times cited: 62 NOT USED (low confidence) J. Kang and H. Hwang, “Atomistic study of III-nitride nanotubes,” Computational Materials Science. 2004. link Times cited: 45 NOT USED (low confidence) M. Migliorato et al., “Influence of composition on the piezoelectric effect and on the conduction band energy levels of inxGa1-xAs/GaAs quantum dots,” Journal of Applied Physics. 2004. link Times cited: 24 Abstract: We address fundamental issues relating to the symmetry of th… read moreAbstract: We address fundamental issues relating to the symmetry of the shape and the nonuniform composition of InGaAs quantum dot islands. Using atomistic simulations in the framework of the Tersoff empirical potential, we study the effect of compositional gradients in the In distribution on the piezoelectric effect in quantum dots. We demonstrate that the internal piezoelectric fields contribute strongly to the experimentally observed optical anisotropies. This is confirmed by accurate high-resolution transmission electron microscopy analysis over hundreds of islands grown in different conditions that reveals the absence of structural anisotropy under our growth conditions. read less NOT USED (low confidence) J. Tarus and K. Nordlund, “Molecular dynamics simulation of Ge surface segregation,” Thin Solid Films. 2004. link Times cited: 4 NOT USED (low confidence) A. Marzegalli et al., “Relaxed SiGe heteroepitaxy on Si with very thin buffer layers: experimental LEPECVD indications and an interpretation based on strain-dependent dislocation nature,” Microelectronic Engineering. 2004. link Times cited: 6 NOT USED (low confidence) J. Stangl, V. Holý, and G. Bauer, “Structural properties of self-organized semiconductor nanostructures,” Reviews of Modern Physics. 2004. link Times cited: 698 Abstract: Instabilities in semiconductor heterostructure growth can be… read moreAbstract: Instabilities in semiconductor heterostructure growth can be exploited for the self-organized formation of nanostructures, allowing for carrier confinement in all three spatial dimensions. Beside the description of various growth modes, the experimental characterization of structural properties, such as size and shape, chemical composition, and strain distribution is presented. The authors discuss the calculation of strain fields, which play an important role in the formation of such nanostructures and also influence their structural and optoelectronic properties. Several specific materials systems are surveyed together with important applications. read less NOT USED (low confidence) A. Mattoni, L. Colombo, and F. Cleri, “Atomistic study of the interaction between a microcrack and a hard inclusion inβ−SiC,” Physical Review B. 2004. link Times cited: 27 NOT USED (low confidence) J. Godet, L. Pizzagalli, S. Brochard, and P. Beauchamp, “Theoretical study of dislocation nucleation from simple surface defects in semiconductors,” Physical Review B. 2004. link Times cited: 78 Abstract: The plasticity of semiconductors has been a subject ofnumero… read moreAbstract: The plasticity of semiconductors has been a subject ofnumerous studies for the last decades in both fundamen-tal and applied research. Despite significant progress inthe understanding of the fundamental mechanisms in-volved, several issues remain, in particular for nanos-tructured semiconductors. In these materials, includ-ing for example nano-grained systems or nanolayers inheteroepitaxy, dimensions are usually too small to allowthe classical mechanisms of dislocation multiplication,such as Franck-Read sources. read less NOT USED (low confidence) S. Goumri‐Said, M. Kanoun, A. E. Merad, G. Merad, and H. Aourag, “Empirical molecular dynamics study of structural, elastic and thermodynamic properties of zinc-blende-like SiGe compound,” Materials Science and Engineering B-advanced Functional Solid-state Materials. 2004. link Times cited: 7 NOT USED (low confidence) T. Iwasaki, “Application of Molecular-Dynamics Simulation to Interface Stabilization in Thin-Film Devices,” Jsme International Journal Series B-fluids and Thermal Engineering. 2004. link Times cited: 21 Abstract: A molecular-dynamics technique for simulating interface diff… read moreAbstract: A molecular-dynamics technique for simulating interface diffusion, which is one of the dominant factors in mechanical failures of thin-film devices, has been developed. This technique was used to find effective methods for suppressing the interface diffusion and for stabilizing interfaces. Barrier-underlayer materials effective for improving the adhesion strength with interconnect films were identified by using this technique. Ruthenium was found to be an effective underlay material for improving the adhesion with Cu interconnects. The crystal orientation of Si substrates effective for reducing atomic diffusion at interfaces between the Si substrates and high-k dielectrics (ZrO2 and HfO2) was determined. The use of Si(111) substrates was found to be effective for suppressing the formation of interfacial layers. read less NOT USED (low confidence) J. Rino et al., “Short- and intermediate-range structural correlations in amorphous silicon carbide: a molecular dynamics study,” Physical Review B. 2004. link Times cited: 67 Abstract: Short- and intermediate-range structural correlations in amo… read moreAbstract: Short- and intermediate-range structural correlations in amorphous silicon carbide $(\mathrm{a}\text{\ensuremath{-}}\mathrm{SiC})$ are studied in terms of partial pair distributions, bond angle distribution functions, and shortest-path ring statistics. A well relaxed sample is prepared following a slow annealing schedule of the simulation at the experimental density of the amorphous phase. The short-range correlation functions indicate a locally ordered amorphous structure with heteronuclear bonds, $\mathrm{Si}--\mathrm{C}$, with no phase separation, and no graphitic or diamond structures present. The bond distances and coordination numbers are similar to those in the crystalline phase. The rings statistics indicate an intermediate-range topology formed by the rearrangement of tetrahedra with the occurrence of corner and edge sharing units connecting two- ($\ensuremath{\sim}5%$ of total), three-, four-, and five-fold rings. The presence of large size rings indicates the existence of nano-voids in the structure, which explains the low density compared with the crystal phase while keeping the same coordination number and bond distance. These simulation results agree well with experimental results. read less NOT USED (low confidence) D. Srivastava, “Computational Nanotechnology of Carbon Nanotubes.” 2004. link Times cited: 13 NOT USED (low confidence) Pérez-Martı́n A., Jiménez-Rodrı́guez J. J., and J. Jiménez‐Sáez, “Shallow boron dopant on silicon: An MD study,” Applied Surface Science. 2004. link Times cited: 7 NOT USED (low confidence) D. Brenner, R. Schlesser, Z. Sitar, R. Dalmau, R. Collazo, and Y. Li, “Model for the influence of boron impurities on the morphology of AlN grown by physical vapor transport,” Surface Science. 2004. link Times cited: 4 NOT USED (low confidence) T. Fang and W.-J. Chang, “Phase transformation of fullerenes using molecular dynamics simulation,” Microelectron. J. 2004. link Times cited: 10 NOT USED (low confidence) W. Moon, M. Son, J. H. Lee, and H. Hwang, “Molecular dynamics simulation of C60 encapsulated in boron nitride nanotubes,” physica status solidi (b). 2004. link Times cited: 6 Abstract: We investigate the C60 chain encapsulated in boron nitride (… read moreAbstract: We investigate the C60 chain encapsulated in boron nitride (BN) nanotubes using molecular‐dynamics simulation. The most favorable BN nanotubes for encapsulation of C60 molecules are (10, 10) and (17, 0) with energy gains of 3.83 and 3.61 eV per C60 for (n, n) and (n, 0) BN nanotubes, respectively. For the diffusion of a C60 into the tube, the position of atoms of a C60 must be not located above the outer wall of the BN nanotube. The C60 located above the outer wall is quickly absorbed and moves on the surface of the tube. The C60 absorbed on the surface is not spontaneously encapsulated inside the tube, which is due to the energy barrier (0.48 eV) of the edge of the BN nanotube. We also calculate the energy barrier for drawing C60 outside the (10, 10) BN nanotube, which is above 3.92 eV. (© 2004 WILEY‐VCH Verlag GmbH & Co. KGaA, Weinheim) read less NOT USED (low confidence) J. Tarus and G. Zollo, “Ion-irradiation-induced effects inSimGensuperlattices,” Physical Review B. 2004. link Times cited: 2 NOT USED (low confidence) J. Kang and H. Hwang, “A Bucky shuttle three-terminal switching device: classical molecular dynamics study,” Physica E-low-dimensional Systems & Nanostructures. 2004. link Times cited: 30 NOT USED (low confidence) H. Hwang, K. Byun, and J. Kang, “Carbon nanotubes as nanopipette: modelling and simulations,” Physica E-low-dimensional Systems & Nanostructures. 2004. link Times cited: 40 NOT USED (low confidence) W. Rowe et al., “Tribology of Abrasive Machining Processes.” 2004. link Times cited: 408 Abstract: This book draws upon the science of tribology to understand,… read moreAbstract: This book draws upon the science of tribology to understand, predict and improve abrasive machining processes. Pulling together information on how abrasives work, the authors, who are renowned experts in abrasive technology, demonstrate how tribology can be applied as a tool to improve abrasive machining processes. Each of the main elements of the abrasive machining system are looked at, and the tribological factors that control the efficiency and quality of the processes are described. Since grinding is by far the most commonly employed abrasive machining process, it is dealt with in particular detail. Solutions are posed to many of the most commonly experienced industrial problems, such as poor accuracy, poor surface quality, rapid wheel wear, vibrations, work-piece burn and high process costs. This practical approach makes this book an essential tool for practicing engineers. Uses the science of tribology to improve understanding and of abrasive machining processes in order to increase performance, productivity and surface quality of final products. A comprehensive reference on how abrasives work, covering kinematics, heat transfer, thermal stresses, molecular dynamics, fluids and the tribology of lubricants. Authoritative and ground-breaking in its first edition, the 2nd edition includes 30 per cent new and updated material, including new topics such as CMP (Chemical Mechanical Polishing) and precision machining for micro-and nano-scale applications. read less NOT USED (low confidence) J. Chen, X. Yang, L. Yang, H. Yang, and J. Dong, “Electronic and transport properties of radially deformed zigzag single-walled carbon nanotubes,” Physics Letters A. 2004. link Times cited: 5 NOT USED (low confidence) D. Migas, S. Cereda, F. Montalenti, and L. Miglio, “Electronic and elastic contributions in the enhanced stability of Ge(105) under compressive strain,” Surface Science. 2004. link Times cited: 59 NOT USED (low confidence) W. Rocchia, L. Zoppi, and L. Colombo, “Combined atomistic and continuum methods to map electric properties of nanostructured carbon films,” Computational Materials Science. 2004. link Times cited: 0 NOT USED (low confidence) V. Nelayev and P. S. Mironchik, “Construction of nano-objects and molecular dynamics simulation,” Saratov Fall Meeting. 2004. link Times cited: 1 Abstract: The continuing miniaturization of microelectronic devices is… read moreAbstract: The continuing miniaturization of microelectronic devices is reaching of their physical limits. Discovery of carbon fullerenes and nanotubes opened a challenging new field in nano-scale devices and materials. Algorithms for the construction of nano-objects, as the initial configurations for the following molecular dynamics simulation, are proposed. Own graphic interface for the spatial visualization of simulated nano-objects is described and some illustrations are presented. read less NOT USED (low confidence) T. Iwasaki, “Molecular-Dynamics Analysis of Interfacial Diffusion Between High-Permittivity Gate Dielectrics And Silicon Substrates,” Journal of Materials Research. 2004. link Times cited: 8 Abstract: Interfacial oxygen diffusion from high-permittivity gate die… read moreAbstract: Interfacial oxygen diffusion from high-permittivity gate dielectrics (ZrO_2 and HfO_2) into Si substrates in ultra-large-scale integrated circuits must be suppressed to prevent the formation of interfacial layers between the gate dielectrics and the Si substrates. Oxygen diffusion was analyzed by using a molecular dynamics technique that includes many-body interactions and charge transfer between different elements. The analysis results showed that the addition of Ti is effective in suppressing interfacial oxygen diffusion. The results also showed that the diffusion at the ZrO_2/Si(111) and HfO_2/Si(111) interfaces is much more suppressed than the diffusion at the ZrO_2/Si(001) and HfO_2/Si(001) interfaces. read less NOT USED (low confidence) D. Quigley and M. Probert, “Langevin dynamics in constant pressure extended systems.,” The Journal of chemical physics. 2004. link Times cited: 117 Abstract: The advantages of performing Langevin dynamics in extended s… read moreAbstract: The advantages of performing Langevin dynamics in extended systems are discussed. A simple Langevin dynamics scheme for producing the canonical ensemble is reviewed, and is then extended to the Hoover ensemble. We show that the resulting equations of motion generate the isobaric-isothermal ensemble. The Parrinello-Rahman ensemble is then discussed and we show that despite the presence of intrinsic probability gradients in this system, a Langevin dynamics approach samples the extended phase space in the correct fashion. The implementation of these methods in the ab initio plane wave density functional theory code CASTEP [M. D. Segall, P. L. D. Lindan, M. J. Probert, C. J. Pickard, P. J. Hasnip, S. J. Clarke, and M. C. Payne, J. Phys.: Condens. Matter 14, 2717 (2003)] is demonstrated. read less NOT USED (low confidence) N. Voulgarakis, G. Hadjisavvas, P. Kelires, and G. Tsironis, “Computational investigation of intrinsic localization in crystalline Si,” Physical Review B. 2004. link Times cited: 41 Abstract: We investigate numerically existence and dynamical propertie… read moreAbstract: We investigate numerically existence and dynamical properties of intrinsic localization in crystalline silicon through the use of interatomic Tersoff force fields. We find a band of intrinsic localized modes (discrete breathers) each with lifetime of at least 60 ps in the spectral region 548-578 cm - 1 , located just above the zone end phonon frequency calculated at 536 cm - 1 . The localized modes extend to more than second neighbors and involve pair central-atom compressions in the range from 6.1 % to 8.6% of the covalent bond length per atom. Finite temperature simulations show that they remain robust to room temperatures or higher with a typical lifetime equal to 6 ps. read less NOT USED (low confidence) S. Shen and S. Atluri, “Computational Nano-mechanics and Multi-scale Simulation,” Cmc-computers Materials & Continua. 2004. link Times cited: 39 Abstract: This article provides a review of the computational nanomech… read moreAbstract: This article provides a review of the computational nanomechanics, from the ab initio methods to classical molecular dynamics simulations, and multitemporal and spatial scale simulations. The recent improvements and developments are briefly discussed. Their applications in nanomechanics and nanotubes are also summarized. read less NOT USED (low confidence) F. Aoumeur-Benkabou and B. Belgoumène, “Structural and dynamical properties of SrO in the rock-salt phase,” Calphad-computer Coupling of Phase Diagrams and Thermochemistry. 2004. link Times cited: 9 NOT USED (low confidence) H. Hwang, O. Kwon, and J. Kang, “Copper nanocluster diffusion in carbon nanotube,” Solid State Communications. 2004. link Times cited: 72 NOT USED (low confidence) J. Kang and H. Hwang, “Comparison of III- Nitride Nanotubes: Atomistic Simulations,” Materials Science Forum. 2004. link Times cited: 1 Abstract: We have investigated the single-wall boron-, aluminum- and g… read moreAbstract: We have investigated the single-wall boron-, aluminum- and gallium-nitride nanotubes using atomistic simulations based on the Tersoff potential. The Tersoff potential for III-nitride effectively describes the properties of III-nitride nanotubes. Structures, energetic and nanomechanics of III-nitride nanotubes were investigated and compared with each other. Youngs moduli of III-N nanotubes were lower than that of CNT. Though the graphite-like sheet formation of AlN was very difficult, since the elastic energy per atom to curve the sheet into cylinder for AlN was very low, if graphite-like sheets of AlN were formed, the extra cost to produce the tubes would be very low read less NOT USED (low confidence) S.-H. Park, H. Kim, D.-K. Lee, J. S. Lee, Y. Choi, and O. D. Kwon, “Heterogeneous crystallization of amorphous silicon expedited by external force fields: a molecular dynamics study,” Superlattices and Microstructures. 2004. link Times cited: 6 NOT USED (low confidence) W. Choi, J. Kang, and H. Hwang, “Cu Nanowire Structures Inside Carbon Nanotubes,” Materials Science Forum. 2004. link Times cited: 0 Abstract: We have investigated the structures of copper nanowires enca… read moreAbstract: We have investigated the structures of copper nanowires encapsulated in carbon nanotubes using a structural optimization process applied to a steepest descent method. Results show that the stable morphology of the cylindrical ultra-thin copper nanowires in carbon nanotubes is multi-shell packs consisted of coaxial cylindrical shells. As the diameters of copper nanotubes increases, the encapsulated copper nanowires have the face centered cubic structure as the bulk. The circular rolling of a triangular network can explain the structures of ultra-thin multi-shell copper nanowires encapsulated in carbon nanotubes. read less NOT USED (low confidence) J. ·. Kim, B. Lee, H. Nam, and D. Kwon, “Molecular Dynamics Analysis of Structure and Intrinsic Stress in Amorphous Silicon Carbide Film with Deposition Process Parameters,” Materials Science Forum. 2004. link Times cited: 0 Abstract: Amorphous silicon carbide (a-SiC) films were deposited using… read moreAbstract: Amorphous silicon carbide (a-SiC) films were deposited using molecular dynamics simulations employing the Tersoff potential. The structure and intrinsic stress of a-SiC films changed dramatically with changes in such principal deposition process parameters as substrate temperature and incident energy. Changes in structure and intrinsic stress with deposition process parameters were analyzed. read less NOT USED (low confidence) T. Mizuguchi, K. Ikeda, F. Yoshida, H. Nakashima, and H. Abe, “Evaluation of Crystal Orientation Dependence of Surface Energy in Silicon,” Journal of The Japan Institute of Metals. 2004. link Times cited: 4 NOT USED (low confidence) P. Jensen, A. Clement, and L. J. Lewis, “Diffusion of nanoclusters on non-ideal surfaces,” Physica E-low-dimensional Systems & Nanostructures. 2004. link Times cited: 14 NOT USED (low confidence) H. Rafii-Tabar, “Computational modelling of thermo-mechanical and transport properties of carbon nanotubes,” Physics Reports. 2004. link Times cited: 190 NOT USED (low confidence) R. Smith, S. Kenny, and D. Ramasawmy, “Molecular-dynamics simulations of sputtering,” Philosophical Transactions of the Royal Society of London. Series A: Mathematical, Physical and Engineering Sciences. 2004. link Times cited: 15 Abstract: The use of molecular–dynamics simulations to understand the … read moreAbstract: The use of molecular–dynamics simulations to understand the ejection processes of particles from surfaces after energetic ion bombardment is discussed. Substrates considered include metals, covalent and ionic materials, polymers and molecular solids. It is shown how the simulations can be used to aid interpretation of experimental results by providing the underlying mechanisms behind the ejection processes. read less NOT USED (low confidence) W. Moon and H. Hwang, “Molecular-dynamics simulation of defect formation energy in boron nitride nanotubes,” Physics Letters A. 2004. link Times cited: 27 NOT USED (low confidence) J. Kang and H. Hwang, “Molecular Dynamics Simulations of Single-wall GaN Nanotubes,” Molecular Simulation. 2004. link Times cited: 16 Abstract: We have investigated the structural properties and the therm… read moreAbstract: We have investigated the structural properties and the thermal behavior of single-wall GaN nanotubes using atomistic simulations based on the Tersoff-type potential. The Tersoff potential for GaN has effectively described the properties of GaN nanotubes. The caloric curves of single-wall GaN nanotubes were divided into three regions corresponding to nanotube, disintegrating range and vapor. Since the stability or the stiffness of the tube decreased with increasing curving strain energy of sheet-to-tube, the disintegration temperatures of GaN nanotubes were closely related to the curving strain energy of sheet-to-tube. read less NOT USED (low confidence) B. Lin, H. Wu, H.-tao Zhu, and S. Y. Yu, “Study on Mechanism for Material Removal and Surface Generation by Molecular Dynamics Simulation in Abrasive Processes,” Key Engineering Materials. 2003. link Times cited: 7 Abstract: Molecular dynamics method which is different to continuous l… read moreAbstract: Molecular dynamics method which is different to continuous linear mechanics is employed to survey the features of grinding and indentation energy dissipation, forces, stress state the atomic space, and then explain the micro-scale mechanism of material removed and surface generation. The research shows that the atoms of the lattice reconstituting and some non-crystal layer are pilled up on the front of abrasive grain, as a result of the continuous advancement of the abrasive grain; the material is removed and formed the grinding chips. The degenerating layer of machined surface is formed with the reconstituting of non-crystal atoms and fracture atomic bonds; it consists of outer non-crystal and inner lattice deformation layers. Introduction Ultra-precision machining, which enables us to produce optical, mechanical and electronic components with micrometer or sub-micrometer form accuracy and surface roughness to within a few tens nanometer, is one of the most successful development within precision engineering. Ductile range grinding of hard-brittle materials is an important and new research topic, researchers show that even in machining process of brittle solids, material can be removed by the action of plastic flow just as metal cutting. But there is not an efficient experiment and observation method for many physical phenomenon of occurring in micro-scale machining region, so many problems in ultra-precision machining remain to be unsolved. The molecular dynamics method has spread from physics into the materials science; it is now entering the area of mechanical engineering, especially in ultra-precision and nanometer machining. One of the pioneering studies on MD simulation of nanometer cutting was initiated at LLNL in late 1980s, and proposed a MD model of the orthogonal cutting process. This was followed by the work of T. Inamura et al in Japan [4] who analyzed the 2-D nanometer cutting mechanism of copper with a diamond tool. Based on the nonlinear finite element formulation which regards atoms and atomic interaction as nodes and elements, the method proposed can handle discontinuous phenomenon due to instantaneous propagation of dislocation in a workpiece during cutting, and revealed that the process of chip formation as well as the stress distribution on the tool surface during cutting is strongly dependent on the type of interaction energy. S. Shimida et al confirmed that very fine chips the uncut thickness of which is at the order of 1 nm can be stablely removed in diamond turning of free machining workpiece, and analyzed the behavior of an atomic solid model using MD analysis method [5]. Komandari et al reported MD simulation studies on machining with large negative rake angle tools to simulate grinding process and compared them with the experimental results [6]. R. Rentsch et al reported the MD simulation for abrasive process, they carried out the simulation of indentation tests and cutting process, and pointed out the difference between cutting and grinding process, especially the pile-up phenomenon in abrasive machining [7]. Overall, many of the challenging machining problems are yet to be investigated. This paper will use MD method, which is different to continuous linear mechanics, to survey the features of grinding energy dissipation, grinding stress, strain state and grinding temperature in the atomic space, and explain the micro-scale mechanism of material removal and surface generation. Key Engineering Materials Online: 2004-03-15 ISSN: 1662-9795, Vols. 259-260, pp 211-215 doi:10.4028/www.scientific.net/KEM.259-260.211 © 2004 Trans Tech Publications Ltd, Switzerland All rights reserved. No part of contents of this paper may be reproduced or transmitted in any form or by any means without the written permission of Trans Tech Publications Ltd, www.scientific.net. (Semanticscholar.org-13/03/20,19:03:38) 212 Advances in Grinding and Abrasive Processes Principle of Simulation Experiment Grinding Model. The simulation of nanometer grinding has been carried out using the model shown in Fig.1, where the workpiece and tool materials are assumed to be monocrystalline silicon with covalent bond and diamond, respectively. Workpiece dimension, grinding grain size and the depth of grinding are determined by means of the practical requirement of simulation experiments. For the purpose of simplicity, tool atoms are assumed to be rigid, that is no deformation and wear. Simulation experiments are conducted in a quasi three-dimensional space, the calculation is mainly completed in x and y coordinates, but considering the effect z direction on x and y directions. Fig.1 Grinding model for MD Potential Energy. In order to carry out MD simulation, it is necessary to know correct interaction potentials of a system of many atoms, the general potential energy can be described by Microcanonical Ensemble contained N atoms as follows [1-2]: read less NOT USED (low confidence) J. Zhao and J. Lu, “A nonorthogonal tight-binding total energy model for molecular simulations,” Physics Letters A. 2003. link Times cited: 17 NOT USED (low confidence) Q. Wei et al., “Impact-energy dependence of atomic mobility in diamondlike carbon film growth,” Physical Review B. 2003. link Times cited: 14 Abstract: In this paper, the deposition of energetic C 2 clusters on s… read moreAbstract: In this paper, the deposition of energetic C 2 clusters on silicon and diamond surfaces is investigated by molecular dynamics simulation. The impact energy ranges from 0.5 to 60 eV in order to compare with experiments of diamondlike carbon (DLC) film synthesis by femtosecond (fs) pulsed laser deposition. The influence of the impact energy on the deposition dynamics as well as the structure of the synthesized films is addressed. Simulations show that at the earlier stage of the deposition, the mobility of surface atoms, especially the recoil atoms, is enhanced at elevated incident energies, and contributes to the smooth growth of DLC films. Our results are consistent with experimental observations. read less NOT USED (low confidence) M. Ishimaru, M. Yamaguchi, and Y. Hirotsu, “Molecular dynamics study of structural and dynamical properties of amorphous Si-Ge alloys,” Physical Review B. 2003. link Times cited: 26 Abstract: Structural and dynamical properties of amorphous silicon-ger… read moreAbstract: Structural and dynamical properties of amorphous silicon-germanium (a-Si 1 - x Ge x ) alloys have been examined by molecular dynamics simulations using the Tersoff interatomic potential. Amorphous networks were generated byrapid quenching from liquid Si 1 - x Ge x alloys. Good agreement was obtained between the simulated and experimentally measured radial distribution functions and phonon densities of states, suggesting that the Tersoff potential is useful for analyzing the atomic configurations and vibrational properties of a-Si 1 - x Ge x alloys. Local atomistic structures, such as topological and chemical short-range order states, were also examined in detail, and we compared them with experimental and theoretical results reported previously. On the basis of the results obtained here, we proposed that the bond length and bond angle around Ge atoms have more distortion than those around Si atoms in a-Si 1 - x Ge x networks. read less NOT USED (low confidence) J. Tarus and K. Nordlund, “Molecular dynamics study on Si20 cluster deposition on Si(0 0 1),” Nuclear Instruments & Methods in Physics Research Section B-beam Interactions With Materials and Atoms. 2003. link Times cited: 8 NOT USED (low confidence) A. Blumenau, C. Fall, R. Jones, S. Öberg, T. Frauenheim, and P. Briddon, “Structure and motion of basal dislocations in silicon carbide,” Physical Review B. 2003. link Times cited: 88 Abstract: $30\ifmmode^\circ\else\textdegree\fi{}$ and $90\ifmmode^\cir… read moreAbstract: $30\ifmmode^\circ\else\textdegree\fi{}$ and $90\ifmmode^\circ\else\textdegree\fi{}$ Shockley partial dislocations lying in ${111}$ and basal planes of cubic and hexagonal silicon carbide, respectively, are investigated theoretically. Density-functional-based tight-binding total-energy calculations are used to determine the core structure and energetics of the dislocations. In a second step their electronic structure is investigated using a pseudopotential method with a Gaussian basis set. Finally, the thermal activation barriers to glide motion of $30\ifmmode^\circ\else\textdegree\fi{}$ and $90\ifmmode^\circ\else\textdegree\fi{}$ Shockley partials are calculated in terms of a process involving the formation and migration of kinks along the dislocation line. The mechanism for enhanced dislocation movement observed under current injection conditions in bipolar silicon carbide devices is discussed. read less NOT USED (low confidence) W. Moon and H. Hwang, “Atomistic study of elastic constants and thermodynamic properties of cubic boron nitride,” Materials Science and Engineering B-advanced Functional Solid-state Materials. 2003. link Times cited: 11 NOT USED (low confidence) P. Sonnet, L. Stauffer, A. Selloni, and P. Kelires, “Defect-mediated carbon incorporation in the Si(0 0 1) surface: role of stress and carbon-defect interactions,” Surface Science. 2003. link Times cited: 5 NOT USED (low confidence) N. Marks, J. Bell, G. Pearce, D. Mckenzie, and M. Bilek, “Atomistic simulation of energy and temperature effects in the deposition and implantation of amorphous carbon thin films,” Diamond and Related Materials. 2003. link Times cited: 28 NOT USED (low confidence) R. Rurali and E. Hernández, “Trocadero: a multiple-algorithm multiple-model atomistic simulation program,” Computational Materials Science. 2003. link Times cited: 61 NOT USED (low confidence) A. Catellani, G. Cicero, G. Galli, and L. Pizzagalli, “First Principles Simulations of Extended Defects at Cubic SiC Surfaces and Interfaces,” Solid State Phenomena. 2003. link Times cited: 0 Abstract: In this paper, we will review some recent investigations on … read moreAbstract: In this paper, we will review some recent investigations on extended def ects in cubic SiC, as obtained from first-principles molecular dynamics. As an exampl e of defects at surfaces, the formation of self-assembled nanowires, originating from coordination def ects at the Carbon terminated SiC(001) surface is discussed. Furthermore, the mechanism governing the creation of a network of edge dislocations at the SiC/Si interface is presente d. This system, characterized by a peculiar ~20% lattice mismatch, can be considered as a template of high lattice mismatched heterostructures, where an ab initio approach is still affordable. We will discuss differences and similarities between the (001) and (111) interfaces, and compare our r esults with recent experimental data. read less NOT USED (low confidence) F. Z. Aoumeur, K. Benkabou, and B. Belgoumène, “Structural and dynamical properties of ZnO in zinc-blende and rocksalt phases,” Physica B-condensed Matter. 2003. link Times cited: 27 NOT USED (low confidence) W. Moon and H. Hwang, “Structural and thermodynamic properties of GaN: a molecular dynamics simulation,” Physics Letters A. 2003. link Times cited: 39 NOT USED (low confidence) R. Crosby, K. Jones, M. Law, A. Larsen, and J. L. Hansen, “311 Defect evolution in Si-implanted Si1−xGex alloys,” Materials Science in Semiconductor Processing. 2003. link Times cited: 10 NOT USED (low confidence) W. Moon, M. Son, and H. Hwang, “Molecular-dynamics simulation of structural properties of cubic boron nitride,” Physica B-condensed Matter. 2003. link Times cited: 33 NOT USED (low confidence) B. Lin, S. Yu, and S. X. Wang, “An experimental study on molecular dynamics simulation in nanometer grinding,” Journal of Materials Processing Technology. 2003. link Times cited: 45 NOT USED (low confidence) H. Koga, Y. Nakamura, and S. Watanabe, “Repulsion-Induced Order Formation in Graphite-Diamondlike Transition of Boron Nitride: A Molecular Dynamics Study,” Journal of the Physical Society of Japan. 2003. link Times cited: 0 Abstract: Repulsion-induced order formation is shown to be crucial to … read moreAbstract: Repulsion-induced order formation is shown to be crucial to the occurrence of the transition from rhombohedral boron nitride (rBN) to cubic boron nitride (cBN), by performing molecular dynamics simulations. Due to the repulsion among B (N), a face-centered-cubic (fcc) lattice of B (N) is formed under compression. This restores the stacking sequence of basal planes, which is disordered during the compression. The fcc lattice directly becomes the fcc lattice of cBN. These results imply the possibility of controlling the transition by controlling the repulsion. read less NOT USED (low confidence) C. R. S. Silva, “Optimizing Metropolis Monte Carlo simulations of semiconductors,” Computer Physics Communications. 2003. link Times cited: 7 NOT USED (low confidence) A. Rastelli, H. von Känel, G. Albini, P. Raiteri, D. Migas, and L. Miglio, “Morphological and compositional evolution of the ge/si(001) surface during exposure to a si flux.,” Physical review letters. 2003. link Times cited: 23 Abstract: By using scanning tunneling microscopy we found that the sur… read moreAbstract: By using scanning tunneling microscopy we found that the surface reconstruction of Ge/Si(001) epilayers evolves from (M x N) to (2 x N), and eventually to (2 x 1), during exposure to a Si flux. This sequence appears to be just the inverse of that observed during the growth of Ge or SiGe alloys on Si(001). However, molecular dynamics simulations supported by ab initio calculations allow us to interpret this morphological evolution in terms of Si migration through the epilayer and complex Si-Ge intermixing below the top Ge layer. read less NOT USED (low confidence) S. Nakagawa, “Crystallographic analysis of the amorphization caused by ion irradiation: Self-irradiation,” Nuclear Instruments & Methods in Physics Research Section B-beam Interactions With Materials and Atoms. 2003. link Times cited: 6 NOT USED (low confidence) J. Nord, K. Nordlund, J. Keinonen, and K. Albe, “Molecular dynamics study of defect formation in GaN cascades,” Nuclear Instruments & Methods in Physics Research Section B-beam Interactions With Materials and Atoms. 2003. link Times cited: 62 NOT USED (low confidence) V. Belko, M. Posselt, and E. Chagarov, “Improvement of the repulsive part of the classical interatomic potential for SiC,” Nuclear Instruments & Methods in Physics Research Section B-beam Interactions With Materials and Atoms. 2003. link Times cited: 15 NOT USED (low confidence) X. Hu, Y. Dai, R. Li, H. Shen, and X. He, “A molecular dynamics study of interstitial boron in diamond,” Physica B-condensed Matter. 2003. link Times cited: 12 NOT USED (low confidence) K. Mylvaganam and L. Zhang, “Residual stress induced atomic scale buckling of diamond carbon coatings on silicon substrate,” Thin Solid Films. 2003. link Times cited: 12 NOT USED (low confidence) C. Cousins and M. Heggie, “Elasticity of carbon allotropes. III. Hexagonal graphite: Review of data, previous calculations, and a fit to a modified anharmonic Keating model,” Physical Review B. 2003. link Times cited: 28 Abstract: The experimental data relating to the second- and third-orde… read moreAbstract: The experimental data relating to the second- and third-order elasticity and the zone-center optic modes of hexagonal graphite are reviewed and some amendments proposed. A modified Keating model involving three sets of interactions, one planar and two interlayer, has been developed. The harmonic parameters, four planar and seven interlayer, have been fitted by least-squares procedures to five second-order elastic constants, five zone-center optic-mode frequencies and two assumptions relating to internal strain. The anharmonic parameters comprise three planar and three interlayer ones. They have been fitted to the pressure derivatives of the five second-order constants and of three of the optic-mode frequencies. The full spectrum of inner elastic constants and internal strain tensors is given, the composition of the second- and third-order elastic constants is exposed, and the corresponding elastic compliances calculated. A pressure-induced phase transition is correctly predicted at around 16 GPa. read less NOT USED (low confidence) R. Komanduri, N. Chandrasekaran, and L. Raff, “Molecular dynamic simulations of uniaxial tension at nanoscale of semiconductor materials for micro-electro-mechanical systems (MEMS) applications,” Materials Science and Engineering A-structural Materials Properties Microstructure and Processing. 2003. link Times cited: 48 NOT USED (low confidence) A. Mattoni, F. Bernardini, and L. Colombo, “Self-interstitial trapping by carbon complexes in crystalline silicon,” Physical Review B. 2002. link Times cited: 42 Abstract: By combining model-potential molecular-dynamics simulations … read moreAbstract: By combining model-potential molecular-dynamics simulations and ab initio calculations we investigate the microscopic mechanism of silicon trapping by carbon substitutional defects (C S ). We find that, upon silicon trapping, carbon is converted into an interstitial mobile complex (C l by an efficient exothermic reaction. Interstitial carbon C I may further interact either with another C S , forming the well-known C I C S dicarbon complex, or with extra silicon and carbon interstitials. In particular, we identify and characterize two structures, namely, C I I and C I C I . They are found energetically stable so that they could play a crucial role in the process of carbon aggregation. According to our calculations C I C I may be formed by the interaction of one I with a C I C S , proving that the latter is not a deactivated trap for interstitials. Our results further suggest that C I I and C I C I are seeds for further carbon aggregation. read less NOT USED (low confidence) C. Tzoumanekas and P. Kelires, “Theory of bond-length variations in relaxed, strained, and amorphous silicon-germanium alloys,” Physical Review B. 2002. link Times cited: 23 Abstract: We present a theoretical study of bond-length and angle vari… read moreAbstract: We present a theoretical study of bond-length and angle variations in relaxed, epitaxially strained, and amorphous Si 1 - x Ge x alloys. Our approach is based on Monte Carlo simulations, within the semigrand-canonical ensemble utilizing Ising-like identity flips, and in conjuction with energies calculated using the empirical potential of Tersoff [Phys. Rev. B 39. 5566 (1989)]. The method offers great statistical precision enabling us to extract clear variations through the whole composition range and for all types of bonds. Our simulations show that in relaxed crystalline alloys, where the lattice constant takes its natural value, bond lengths depend on composition x and that these variations are type specific, in agreement with recent experimental studies. Similar type-specific variations are found for the angles and the second-nearest-neighbor distances. This analysis also reveals that the negative deviation of the lattice constant from Vegard's law is mainly due to radial, and not angular, relaxations. In the epitaxially strained alloys, bond lengths decrease with x due to the two-dimensional confinement in the growth layers, in good agreement with predictions based on the macroscopic theory of elasticity. The dimer bond lengths at the (100)-(2 × 1)-reconstructed alloy surface remain nearly constant, and they are elongated with respect to the bulk values. In the amorphous alloys, we unravel a remarkable behavior of bond lengths at the dilute low-x alloy limit, characterized by strong relaxations and elongation. Furthermore, the bond lengths decrease with increasing Ge content. We offer an explanation of this effect based on the analysis of the enthalpy of formation of the amorphous alloy. read less NOT USED (low confidence) V. Ivashchenko, P. Turchi, V. Shevchenko, L. A. Ivashchenko, and G. V. Rusakov, “Tight-binding molecular-dynamics simulations of amorphous silicon carbides,” Physical Review B. 2002. link Times cited: 24 Abstract: Atomic and electronic structures of amorphous tetrahedral si… read moreAbstract: Atomic and electronic structures of amorphous tetrahedral silicon carbide a-SiC are analyzed on the basis of molecular dynamics simulations performed in the framework of a ${\mathrm{sp}}^{3}{s}^{*}$ tight-binding force model. The a-SiC samples are generated from dilute vapors and melts. The topology and the local chemical order of the resulting amorphous networks are very sensitive to the initial high-temperature structures. The simulations are used to investigate the electronic distribution in the band gap region and the changes in the density of states caused by the presence of homo-polar bonds, coordination defects, and strongly distorted tetrahedral species. For completeness the results obtained for a-SiC are compared with those from various semiempirical schemes and from ab initio pseudopotential calculations. read less NOT USED (low confidence) D. Qian, G. Wagner, W. K. Liu, M.-F. Yu, and R. Ruoff, “Mechanics of carbon nanotubes,” Applied Mechanics Reviews. 2002. link Times cited: 1115 Abstract: Soon after the discovery of carbon nanotubes, it was realize… read moreAbstract: Soon after the discovery of carbon nanotubes, it was realized that the theoretically predicted mechanical properties of these interesting structures--including high strength, high stiffness, low density and
structural perfection--could make them ideal for a wealth of technological applications. The experimental
verification, and in some cases refutation, of these predictions, along with a number of computer simulation methods applied to their modeling, has led over the past decade to an improved but by no means complete understanding of the mechanics of carbon nanotubes. We review the theoretical predictions and discuss the experimental techniques that are most often used for the challenging tasks of visualizing and manipulating these tiny structures. We also outline the computational approaches that have been taken, including ab initio quantum mechanical simulations, classical molecular dynamics, and continuum models. The development of multiscale and multiphysics models and simulation tools naturally arises as a result of the link between basic scientific research and engineering application; while this issue is still under intensive study, we present here some of the approaches to this topic. Our concentration throughout is on the exploration of mechanical properties such as Young's modulus, bending stiffness, buckling criteria, and tensile and compressive strengths. Finally, we discuss several examples of exciting applications that take advantage of these properties, including nanoropes, filled nanotubes, nanoelectromechanical systems, nanosensors, and nanotube-reinforced polymers. This review article cites 349 references. read less NOT USED (low confidence) L. Pizzagalli and Galli, “Surface reconstruction effects on atomic properties of semiconducting nanoparticles,” Materials Science and Engineering B-advanced Functional Solid-state Materials. 2002. link Times cited: 11 NOT USED (low confidence) A. C. Sparavigna, “Lattice thermal conductivity in cubic silicon carbide,” Physical Review B. 2002. link Times cited: 31 Abstract: The lattice thermal conductivity of cubic silicon carbide is… read moreAbstract: The lattice thermal conductivity of cubic silicon carbide is evaluated by means of a microscopic model. considering the discrete nature of the lattice and its Brillouin zone for phonon dispersions and scattering mechanisms. The phonon Boltzmann equation is solved iteratively, with the three-phonon normal and umklapp collisions rigorously treated, avoiding relaxation-time approximations. Good agreement with the experimental data is obtained. Moreover, the role of point defects, such as antisites, on the lattice thermal conductivity is discussed. read less NOT USED (low confidence) Y. Umeno, T. Kitamura, K. Date, M. Hayashi, and T. Iwasaki, “Optimization of interatomic potential for Si/SiO2 system based on force matching,” Computational Materials Science. 2002. link Times cited: 25 NOT USED (low confidence) W. Goddard, D. Brenner, S. Lyshevski, and G. Iafrate, “Contributions of Molecular Modeling to Nanometer-Scale Science and Technology.” 2002. link Times cited: 2 NOT USED (low confidence) F. Finocchi, “Theoretical investigations of Si/C/N- based alloys.” 2002. link Times cited: 0 NOT USED (low confidence) K. Mylvaganam and L. Zhang, “Effect of oxygen penetration in silicon due to nano-indentation,” Nanotechnology. 2002. link Times cited: 24 Abstract: This paper aims to explore the effect of O2 on the nano-inde… read moreAbstract: This paper aims to explore the effect of O2 on the nano-indentation of diamond cubic silicon using molecular dynamics simulation. Obtained with the aid of the Tersoff potential for Si–Si interactions and the Morse potential for all other interactions, the results show that on indentation, the O2 molecule in the appropriate position and orientation dissociates into oxygen atoms, penetrates into the subsurface region and forms chemical bonds with silicon atoms. The penetration of oxygen atoms attracts silicon atoms, causing substantial disorder in the substrate. read less NOT USED (low confidence) M. Grimaldi et al., “Luminescence from beta-FeSi2 precipitates in Si. I. Morphology and epitaxial relationship,” Physical Review B. 2002. link Times cited: 35 Abstract: The goal of this paper is to investigate the morphology and … read moreAbstract: The goal of this paper is to investigate the morphology and the structure of ion-beam synthesized β-FeSi 2 precipitates and the defects in the Si matrix by using transmission electron microscopy (TEM) and, in a few cases,conversion electron Mossbauer spectroscopy or Rutherford backscattering spectrometry. We shall point out how the different process parameters affect the resulting structure and the optimum process window for light emitting application of β-FeSi 2 . In particular, we will also show that within the optimum process window at least two different types of precipitates are obtained in separate regions: small ball-shaped precipitates in the surface region and large disc-shaped precipitates deeper in the sample. The latter are shown to display a very good interface to the Si matrix, as obtained by TEM analysis and dedicated molecular dynamics simulation. In the second part of this paper [Martinelli et al., Phys. Rev. B 66, 085320 (2002)], the nature and the origin of the 1.54-μm photoluminescence signal obtained from our best samples will be analyzed in detail. read less NOT USED (low confidence) F. El-Mellouhi, W. Sekkal, and A. Zaoui, “A modified Tersoff potential for the study of finite temperature properties of BP,” Physica A-statistical Mechanics and Its Applications. 2002. link Times cited: 16 NOT USED (low confidence) M. Huhtala, A. Kuronen, and K. Kaski, “Carbon nanotube structures: molecular dynamics simulation at realistic limit,” Computer Physics Communications. 2002. link Times cited: 49 NOT USED (low confidence) V. Shenoy, C. Ciobanu, and L. Freund, “Strain induced stabilization of stepped Si and Ge surfaces near (001),” Applied Physics Letters. 2002. link Times cited: 51 Abstract: We report on calculations of the formation energies of sever… read moreAbstract: We report on calculations of the formation energies of several [100] and [110] oriented step structures on biaxially stressed Si and Ge (001) surfaces. It is shown that a novel rebonded [100] oriented single-height step is strongly stabilized by compressive strain compared to most well-known step structures. We propose that the side walls of “hut”-shaped quantum dots observed in recent experiments on SiGe/Si films are made up of these steps. Our calculations provide an explanation for the nucleationless growth of shallow mounds, with steps along the [100] and [110] directions in low- and high-misfit films, respectively, and for the stability of the (105) facets under compressive strain. read less NOT USED (low confidence) K. Scheerschmidt, D. Conrad, and A. Belov, “Atomic processes at bonded Si-interfaces studied by molecular dynamics: tayloring densities and bandgaps?,” Computational Materials Science. 2002. link Times cited: 4 NOT USED (low confidence) C. Schubert et al., “Synthesis of group IV nanocrystals in SiC by ion beam processing,” Nuclear Instruments & Methods in Physics Research Section B-beam Interactions With Materials and Atoms. 2002. link Times cited: 6 NOT USED (low confidence) X. Yuan and L. Hobbs, “Modeling chemical and topological disorder in irradiation-amorphized silicon carbide,” Nuclear Instruments & Methods in Physics Research Section B-beam Interactions With Materials and Atoms. 2002. link Times cited: 69 NOT USED (low confidence) S. Sundararajan, B. Bhushan, T. Namazu, and Y. Isono, “Mechanical property measurements of nanoscale structures using an atomic force microscope.,” Ultramicroscopy. 2002. link Times cited: 101 NOT USED (low confidence) M. Kohyama, “TOPICAL REVIEW: Computational studies of grain boundaries in covalent materials,” Modelling and Simulation in Materials Science and Engineering. 2002. link Times cited: 74 Abstract: Computational studies of energetics, atomic and electronic s… read moreAbstract: Computational studies of energetics, atomic and electronic structures and various properties of grain boundaries in covalent materials such as semiconductors and covalent ceramics are reviewed. For coincidence tilt boundaries, atomic and electronic structures were investigated intensively by using various computational schemes such as many-body interatomic potentials, tight-binding method and first-principles method. Computational results were compared with experimental results using recent novel techniques of electron microscopy such as high-resolution transmission electron microscopy, atomic-resolution Z-contrast imaging and electron energy-loss spectroscopy. Such collaboration clarified the detailed nature of coincidence tilt boundaries constructed by structural units. The behaviour of dopants at semiconductor grain boundaries was also investigated by such collaboration. Computations of twist boundaries provided insight into the nature of disordered configurations at general grain boundaries, which should strongly affect the properties of polycrystalline semiconductors and structural ceramics. Recent computational studies dealt with the basic mechanical properties of grain boundaries in covalent materials, where the behaviour of interfacial bonds plays an essential role. read less NOT USED (low confidence) X. Hu, Y. Dai, R. Li, H. Shen, and X. He, “The diffusion of vacancies near a diamond (001) surface,” Solid State Communications. 2002. link Times cited: 18 NOT USED (low confidence) U. Kaiser, J. Biskupek, D. Muller, K. Gärtner, and C. Schubert, “Properties of GeSi Nanocrystals Embedded in Hexagonal SiC,” Crystal Research and Technology. 2002. link Times cited: 14 Abstract: In this paper high-resolution electron microscopy investigat… read moreAbstract: In this paper high-resolution electron microscopy investigations and molecular dynamics simulations of GeSi nanocrystals buried in 4H-SiC are performed, showing that the experimentally observed shapes of the GeSi nanocrystals are strongly correlated with their orientational relationships. Measurements of the lattice spacing suggest that the nanocrystals are strained. Quantum confinement in selected nanocrystals has been detected using spatially-resolved electron energy loss spectroscopy performed in conjunction with atomic resolution annular dark-field scanning TEM. read less NOT USED (low confidence) N. Marks, “Modelling diamond-like carbon with the environment-dependent interaction potential,” Journal of Physics: Condensed Matter. 2002. link Times cited: 97 Abstract: The environment-dependent interaction potential is a transfe… read moreAbstract: The environment-dependent interaction potential is a transferable empirical potential for carbon which is well suited for studying disordered systems. Ab initio data are used to motivate and parametrize the functional form, which includes environment-dependence in the pair and triple terms, and a generalized aspherical coordination describing dihedral rotation and non-bonded π-repulsion. Simulations of liquid carbon compare very favourably with Car-Parrinello calculations, while amorphous networks generated by liquid quench have properties superior to Tersoff, Brenner and orthogonal tight-binding calculations. The efficiency of the method enables the first simulations of tetrahedral amorphous carbon by deposition, and a new model for the formation of diamond-like bonding is presented. read less NOT USED (low confidence) I. Jang, B. Ni, and S. Sinnott, “Study of angular influence of C3H5+ ion deposition on polystyrene surfaces using molecular dynamics simulations,” Journal of Vacuum Science and Technology. 2002. link Times cited: 10 Abstract: The influence of incident angle on the interaction of polyat… read moreAbstract: The influence of incident angle on the interaction of polyatomic hydrocarbon ions (C3H5+) with polystyrene surfaces is examined using classical molecular dynamics simulations. The forces are determined using the reactive empirical bond order method developed by Tersoff and parametrized by Brenner. The total incident energy is 50 eV and the angles considered are 0° (normal to the surface), 15°, 45°, and 75°. At each angle, the outcomes of 80 trajectories are compiled and averaged. The results show that intact ions scatter from the surface in only 2% of the trajectories and that the ions dissociate in 61% of the trajectories at normal incidence. At 75°, intact ions scatter away in 56% and they dissociate in only 30% of the trajectories. The largest total amount of carbon is deposited at normal incident angles. However, more ions or ion fragments are predicted to remain near the surface (penetrate 3.5–5.5 A) at 45°. This is because ion fragments tend to penetrate more deeply (6–7 A) into the surface at small... read less NOT USED (low confidence) M. Migliorato, A. Cullis, M. Fearn, and J. Jefferson, “Atomistic simulation of InxGa1-xAs/GaAs quantum dots with nonuniform composition,” Physica E-low-dimensional Systems & Nanostructures. 2002. link Times cited: 15 NOT USED (low confidence) I. Marinescu, J. Ramírez-Salas, and A. Noreyan, “New millennium frontiers on precision engineering,” International Journal of Production Research. 2002. link Times cited: 2 Abstract: The need to establish ultraprecision mechanical fabrication … read moreAbstract: The need to establish ultraprecision mechanical fabrication processes to produce 'microfunctional structures' that have microstructures on their surfaces and/or inside and which are capable of performing various functions are inarguably growing increasingly stronger. In industries today, holographic optical elements (OHE), silicon-on-insulator (DOI) substrates and semiconductor devices wafers for ultralarge-scale integrated circuits(ULSI), microlens and microparts/components are good examples of microfunctional structures in the field of optoelectronics and mechatronics. For all these applications, the definition of precision engineering was changed by a few orders of magnitude. Some example of new precision engineering processes will be presented, which will include atomistic level polishing of AlTiC magnetic heads, microspherical lens fabrication and molecular dynamics (MD) simulation of the abrasive processes. Finally, some of the limitations of the precision engineering processes will be pointed out. read less NOT USED (low confidence) V. Ivashchenko and V. Shevchenko, “Effects of short-range disorder upon electronic properties of a-SiC alloys,” Applied Surface Science. 2001. link Times cited: 13 NOT USED (low confidence) R. Haerle, A. Pasquarello, and A. Baldereschi, “First-principle study of C 1s core-level shifts in amorphous carbon,” Computational Materials Science. 2001. link Times cited: 15 NOT USED (low confidence) J. Cai and J.-S. Wang, “Molecular Dynamics Study of the Friction Properties for a Ge Tip-Surface System,” Surface Review and Letters. 2001. link Times cited: 0 NOT USED (low confidence) D. Srivastava, M. Menon, and K. Cho, “Computational nanotechnology with carbon nanotubes and fullerenes,” Comput. Sci. Eng. 2001. link Times cited: 114 Abstract: The authors envision computational nanotechnology's rol… read moreAbstract: The authors envision computational nanotechnology's role in developing the next generation of multifunctional materials and molecular-scale electronic and computing devices, sensors, actuators, and machines. They briefly review computational techniques and provide a few recent examples derived from computer simulations of carbon nanotube-based molecular nanotechnology. The four core areas are: molecular-scale, ultralightweight, extremely strong, functional or smart materials; molecular-scale or nanoscale electronics with possibilities for quantum computing; molecular-scale sensors or actuators; and molecular machines or motors with synthetic materials. The underlying molecular-scale building blocks in all four areas are fullerenes and carbon nanotube-based molecular materials. Only the different aspects of their physical, chemical, mechanical, and electronic properties create the many applications possible with these materials in vastly different areas. read less NOT USED (low confidence) W. Lie et al., “Theoretical study of embedded InAs quantum dots in GaAs,” Journal of Crystal Growth. 2001. link Times cited: 0 NOT USED (low confidence) R. Sahara, H. Mizuseki, K. Ohno, H. Kubo, and Y. Kawazoe, “Lattice Monte Carlo simulation with a renormalized potential in Si,” Journal of Crystal Growth. 2001. link Times cited: 3 NOT USED (low confidence) M. Posselt, V. Belko, and E. Chagarov, “Influence of polytypism on elementary processes of ion-beam-induced defect production in SiC,” Nuclear Instruments & Methods in Physics Research Section B-beam Interactions With Materials and Atoms. 2001. link Times cited: 4 NOT USED (low confidence) S. Nakagawa and G. Betz, “Coalescence of B ions during high-fluence implantation into a Si target,” Nuclear Instruments & Methods in Physics Research Section B-beam Interactions With Materials and Atoms. 2001. link Times cited: 15 NOT USED (low confidence) A. Zaoui and W. Sekkal, “Molecular dynamics study of mechanical and thermodynamic properties of pentaerythritol tetranitrate,” Solid State Communications. 2001. link Times cited: 18 NOT USED (low confidence) H. Rafii-Tabar and K. Ghafoori-Tabrizi, “Modeling nanoscopic formations of C60 on supporting substrates,” Progress in Surface Science. 2001. link Times cited: 10 NOT USED (low confidence) K. Nordlund, J. Nord, and J. Keinonen, “Chemical effects in collision cascades,” Nuclear Instruments & Methods in Physics Research Section B-beam Interactions With Materials and Atoms. 2001. link Times cited: 3 NOT USED (low confidence) R. Hayashi, K. Tanaka, S. Horiguchi, and Y. Hiwatari, “A classical molecular dynamics simulation of the carbon cluster formation process on a parallel computer,” Diamond and Related Materials. 2001. link Times cited: 6 NOT USED (low confidence) Y. Osetsky, D. Bacon, C. Matthai, and N. H. March, “Cleavage force, tribology and bond breaking in some transition metals,” Journal of Physics and Chemistry of Solids. 2000. link Times cited: 1 NOT USED (low confidence) S. Ueda, T. Ohsaka, and S. Kuwajima, “Sputtering studies of beryllium with helium and deuterium using molecular dynamics approach,” Journal of Nuclear Materials. 2000. link Times cited: 4 NOT USED (low confidence) G. Henkelman and H. Jónsson, “Improved tangent estimate in the nudged elastic band method for finding minimum energy paths and saddle points,” Journal of Chemical Physics. 2000. link Times cited: 6380 Abstract: An improved way of estimating the local tangent in the nudge… read moreAbstract: An improved way of estimating the local tangent in the nudged elastic band method for finding minimum energy paths is presented. In systems where the force along the minimum energy path is large compared to the restoring force perpendicular to the path and when many images of the system are included in the elastic band, kinks can develop and prevent the band from converging to the minimum energy path. We show how the kinks arise and present an improved way of estimating the local tangent which solves the problem. The task of finding an accurate energy and configuration for the saddle point is also discussed and examples given where a complementary method, the dimer method, is used to efficiently converge to the saddle point. Both methods only require the first derivative of the energy and can, therefore, easily be applied in plane wave based density-functional theory calculations. Examples are given from studies of the exchange diffusion mechanism in a Si crystal, Al addimer formation on the Al(100) surfa... read less NOT USED (low confidence) K. Nordlund, J. Nord, J. Frantz, and J. Keinonen, “Strain-induced Kirkendall mixing at semiconductor interfaces,” Computational Materials Science. 2000. link Times cited: 48 NOT USED (low confidence) M. Kanoun, W. Sekkal, H. Aourag, and G. Merad, “Molecular-dynamics study of the structural, elastic and thermodynamic properties of cadmium telluride,” Physics Letters A. 2000. link Times cited: 50 NOT USED (low confidence) S. Sriraman, S. Ramalingam, E. Aydil, and D. Maroudas, “Abstraction of hydrogen by SiH radicals from hydrogenated amorphous silicon surfaces,” Surface Science. 2000. link Times cited: 9 NOT USED (low confidence) M. Kitabatake, “SiC/Si heteroepitaxial growth,” Thin Solid Films. 2000. link Times cited: 24 NOT USED (low confidence) T. Ohira, O. Ukai, and M. Noda, “Fundamental processes of microcrystalline silicon film growth: a molecular dynamics study,” Surface Science. 2000. link Times cited: 36 NOT USED (low confidence) C. Tzoumanekas and P. Kelires, “Segregation, clustering, and suppression of phase separation in amorphous silicon–germanium alloys,” Journal of Non-crystalline Solids. 2000. link Times cited: 10 NOT USED (low confidence) C. Mathioudakis and P. Kelires, “Softening of elastic moduli of amorphous semiconductors,” Journal of Non-crystalline Solids. 2000. link Times cited: 17 NOT USED (low confidence) Pérez-Martı́n A., J. Domínguez-Vázquez, and Jiménez-Rodrı́guez J. J., “A MD study of low energy boron bombardment on silicon.,” Nuclear Instruments & Methods in Physics Research Section B-beam Interactions With Materials and Atoms. 2000. link Times cited: 11 NOT USED (low confidence) R. Devanathan and W. J. Weber, “Displacement energy surface in 3C and 6H SiC,” Journal of Nuclear Materials. 2000. link Times cited: 190 NOT USED (low confidence) E. Burgos, E. Halac, and H. Bonadeo, “On the crystal structure of C36,” Chemical Physics Letters. 2000. link Times cited: 21 NOT USED (low confidence) F. Benkabou, H. Aourag, P. Becker, and M. Certier, “Molecular Dynamics Study of Zinc-Blende GaN, AIN and InN,” Molecular Simulation. 2000. link Times cited: 16 Abstract: We present a result of the molecular dynamics calculations w… read moreAbstract: We present a result of the molecular dynamics calculations with used a three-body empirical Tersoff potential. The parameters of the Tersoff potential are determined for nitride compound semiconductors such as GaN, AlN and InN. The structural and thermodynamic properties of GaN, AlN and InN in zinc-blende structure are presented. We report the equilibrium lattice constants, the bulk moduli, the cubic clastic constants, thermal expansion coefficient and specific heat. Good agreement is obtained with recent experimental and theoretical results for all constants. read less NOT USED (low confidence) A. Richter, R. Ries, R. Smith, M. Henkel, and B. Wolf, “Nanoindentation of diamond, graphite and fullerene films,” Diamond and Related Materials. 2000. link Times cited: 126 NOT USED (low confidence) H. Rafii-Tabar, “Modelling the nano-scale phenomena in condensed matter physics via computer-based numerical simulations,” Physics Reports. 2000. link Times cited: 163 NOT USED (low confidence) Y. Saito, N. Sasaki, H. Moriya, A. Kagatsume, and S. Noro, “Parameter Optimization of Tersoff Interatomic Potentials Using a Genetic Algorithm,” Jsme International Journal Series A-solid Mechanics and Material Engineering. 2000. link Times cited: 10 Abstract: A method that gives the parameters of advanced Tersoff inter… read moreAbstract: A method that gives the parameters of advanced Tersoff interatomic potentials for describing nonequilibrium atomic structures has been developed. This method uses a genetic algorithm to optimize the Tersoff potential parameters fitted to first-principles-calculated cohesive energies of various carbon systems, including bulk systems with atomic defects and amorphous, surface, or cluster systems under stress. These optimized parameters converge towards a set of Tersoff potential parameters that well describes not only crystals but also amorphous systems. read less NOT USED (low confidence) D. Simeone, C. Mallet, P. Dubuisson, G. Baldinozzi, C. Gervais, and J. Maquet, “Study of boron carbide evolution under neutron irradiation by Raman spectroscopy,” Journal of Nuclear Materials. 2000. link Times cited: 63 NOT USED (low confidence) S. Sinnott et al., “Model of carbon nanotube growth through chemical vapor deposition,” Chemical Physics Letters. 1999. link Times cited: 523 NOT USED (low confidence) J. F. Justo, V. Bulatov, and S. Yip, “DISLOCATION CORE RECONSTRUCTION AND ITS EFFECT ON DISLOCATION MOBILITY IN SILICON,” Journal of Applied Physics. 1999. link Times cited: 31 Abstract: Through atomistic calculations of kink nucleation and migrat… read moreAbstract: Through atomistic calculations of kink nucleation and migration in the core of partial dislocations in silicon we demonstrate that symmetry-breaking structural reconstructions will strongly affect dislocation mobility. Core reconstructions give rise to multiple kink species, and, relative to kinks in an unreconstructed dislocation, an increase in kink formation and migration energies. These factors provide additional resistance to dislocation motion which scales with the energy reconstruction. Our results indicate that the observed variations of dislocation mobility in going from elemental to IV–IV, and further to III–V and II–VI zinc-blende semiconductors, can be attributed in part to the weakening of core reconstruction across the series. read less NOT USED (low confidence) T. Muramoto, Y. Yamamura, T. Miura, and S. Lee, “Calculations of differential cross-section for collisions of noble gas ions with carbon atoms in C60,” Nuclear Instruments & Methods in Physics Research Section B-beam Interactions With Materials and Atoms. 1999. link Times cited: 2 NOT USED (low confidence) T. Aoki, T. Seki, J. Matsuo, Z. Insepov, and I. Yamada, “Cluster size dependence of the impact process on a carbon substrate,” Nuclear Instruments & Methods in Physics Research Section B-beam Interactions With Materials and Atoms. 1999. link Times cited: 36 NOT USED (low confidence) A. Dyson and P. Smith, “Improved empirical interatomic potential for C—Si—H systems,” Molecular Physics. 1999. link Times cited: 30 Abstract: The Brenner hydrocarbon potential was extended recently to i… read moreAbstract: The Brenner hydrocarbon potential was extended recently to include interactions with silicon. This extended Brenner potential has now been improved by the fitting of bond order correction terms, and the introduction of an adjustable parameter into the angular function. The new potential gives an excellent description of small Si m H n molecules and radicals. Its treatment of the low index surfaces of silicon and β-SiC is also significantly improved, although the recently proposed non-dimerized structure for the silicon terminated (001) surface of β-SiC is not described properly. Calculations of the chemisorption of C2H2 and CH3 onto the (001) surfaces of silicon and β-SiC using this improved potential are reported. Also presented are some initial results of molecular dynamics simulations of the Si(111) 7 × 7:CH3 and hydrogenated Si(001) 2 × 1:C2H2 chemisorption systems. read less NOT USED (low confidence) M. Salmi, M. Alatalo, T. Ala‐Nissila, and R. Nieminen, “Energetics and diffusion paths of gallium and arsenic adatoms on flat and stepped GaAs(001) surfaces,” Surface Science. 1999. link Times cited: 33 NOT USED (low confidence) U. Wad, A. V. Limaye, M. Gokhale, and S. Ogale, “Comparative study of adatom induced relaxations and energetics for Si, Ge and carbon adsorption on a (2×1) Si(001) surface,” Bulletin of Materials Science. 1999. link Times cited: 1 NOT USED (low confidence) R. Smith, M. Harrison, and R. Webb, “Implantation of silicon using the boron cluster BF2,” Thin Solid Films. 1999. link Times cited: 2 NOT USED (low confidence) F. Benkabou, C. Chikr.Z, H. Aourag, P. Becker, and M. Certier, “Atomistic study of zinc-blende BAs from molecular dynamics,” Physics Letters A. 1999. link Times cited: 15 NOT USED (low confidence) P. Gumbsch, “Atomistic modelling of diffusion-controlled interfacial decohesion,” Materials Science and Engineering A-structural Materials Properties Microstructure and Processing. 1999. link Times cited: 12 NOT USED (low confidence) S. Ramalingam, D. Maroudas, and E. Aydil, “Visualizing radical-surface interactions in plasma deposition processes: reactivity of SiH/sub 3/ radicals with Si surfaces,” IEEE Transactions on Plasma Science. 1999. link Times cited: 5 Abstract: There is a need for improving our fundamental understanding … read moreAbstract: There is a need for improving our fundamental understanding of the radical surface interactions during plasma enhanced chemical vapor deposition of Si. Toward this goal, we have calculated the interaction energy between SiH/sub 3/ radicals and various Si surfaces, and mapped the changes in this energy as a function of position on the surface. Application of this analysis to the SiH/sub 3/ radical impinging on a variety of Si surfaces, coupled with detailed investigation of the radical impingement dynamics, proved valuable in understanding and visualizing the driving forces that determine the nature of the radical-surface interactions during plasma deposition of Si. read less NOT USED (low confidence) E. Burgos, E. Halac, and H. Bonadeo, “A semi-empirical potential for the statics and dynamics of covalent carbon systems,” Chemical Physics Letters. 1998. link Times cited: 13 NOT USED (low confidence) P. Kelires, “Theoretical investigation of the equilibrium surface structure of Si1−x−yGexCy alloys,” Surface Science. 1998. link Times cited: 17 NOT USED (low confidence) M. Sahimi, “Non-linear and non-local transport processes in heterogeneous media: from long-range correlated percolation to fracture and materials breakdown,” Physics Reports. 1998. link Times cited: 154 NOT USED (low confidence) S. Ramalingam, D. Maroudas, E. Aydil, and S. Walch, “Abstraction of hydrogen by SiH3 from hydrogen-terminated Si(001)-(2×1) surfaces,” Surface Science. 1998. link Times cited: 48 NOT USED (low confidence) T. Fukuda, “Oxygen-induced missing dimer row formation on the Ge(100) surface,” Surface Science. 1998. link Times cited: 1 NOT USED (low confidence) K. Beardmore and N. Grønbech-Jensen, “An efficient molecular dynamics scheme for predicting dopant implant profiles in semiconductors,” Nuclear Instruments & Methods in Physics Research Section B-beam Interactions With Materials and Atoms. 1998. link Times cited: 14 NOT USED (low confidence) R. Czajka, L. Jurczyszyn, and H. Rafii-Tabar, “Surface physics at the nano-scale via scanning probe microscopy and molecular dynamics simulations,” Progress in Surface Science. 1998. link Times cited: 4 NOT USED (low confidence) T. Aoki, T. Seki, J. Matsuo, Z. Insepov, and I. Yamada, “Molecular dynamics simulation of a carbon cluster ion impacting on a carbon surface,” Materials Chemistry and Physics. 1998. link Times cited: 19 NOT USED (low confidence) T. Seki, T. Aoki, M. Tanomura, J. Matsuo, and I. Yamada, “Energy dependence of a single trace created by C60 ion impact,” Materials Chemistry and Physics. 1998. link Times cited: 22 NOT USED (low confidence) H. Hensel and H. Urbassek, “Preferential effects in low-energy Si bombardment of SiC,” Nuclear Instruments & Methods in Physics Research Section B-beam Interactions With Materials and Atoms. 1998. link Times cited: 16 NOT USED (low confidence) J. Kouvetakis, D. Chandrasekhar, and D. J. Smith, “Growth and characterization of thin Si80C20 films based upon Si4C building blocks,” Applied Physics Letters. 1998. link Times cited: 10 Abstract: The growth of thin Si80C20 diamond-structured material on (1… read moreAbstract: The growth of thin Si80C20 diamond-structured material on (100)Si has been achieved using the novel C–H free, carbon source tetrasilyl methane, C(SiH3)4. The precursor decomposes at temperatures in the range 600–700 °C to give thin amorphous layers with a composition of Si0.80C0.20, which corresponds to the same relative concentrations of Si and C as in the precursor. The amorphous material is crystallized via solid-phase epitaxy by annealing at 825 °C to yield a potentially ordered structure in which Si4C tetrahedra are linked together in a three-dimensional diamond-cubic framework. Measured lattice parameters are larger than expected from Vegards’ Law, a discrepancy which is attributed to steric repulsions causing bond elongation. read less NOT USED (low confidence) J. Li, L. Porter, and S. Yip, “Atomistic modeling of finite-temperature properties of crystalline β-SiC: II. Thermal conductivity and effects of point defects,” Journal of Nuclear Materials. 1998. link Times cited: 248 NOT USED (low confidence) M. H. Shapiro, “Using molecular dynamics simulations to investigate surface modification processes,” Surface & Coatings Technology. 1998. link Times cited: 3 NOT USED (low confidence) S. Logothetidis, M. Gioti, and P. Kelires, “Stability and interdiffusion at the a-C/Si(100) interface,” Journal of Non-crystalline Solids. 1998. link Times cited: 3 NOT USED (low confidence) Q. A. Bhatti and C. Matthai, “Computer simulation of adatom dynamics on single-stepped SiC(001) surfaces,” Thin Solid Films. 1998. link Times cited: 2 NOT USED (low confidence) W. Yan and K. Komvopoulos, “Three-Dimensional Molecular Dynamics Analysis of Atomic-Scale Indentation,” Journal of Tribology-transactions of The Asme. 1998. link Times cited: 15 Abstract: The complete atomic-scale indentation cycle is analyzed usin… read moreAbstract: The complete atomic-scale indentation cycle is analyzed using molecular dynamics simulations. A hysteresis is observed in the instantaneous normalforce versus surface separation distance curve obtained with an atom or a rigid tip indenting and, subsequently, retracting from a dynamic face-centered-cubic substrate consisting of argon or copper. The generation of irreversible deformation in a Lennard-Jones solid is revealed in light of simulation results for indentation by a single atom. The direction of irreversible deformation is shown to coincide with that of macroscopic plastic flow. The compressive yield strength decreases with increasing substrate temperature and decreasing indentation speed. The phenomena of tip wetting by substrate atoms and connective neck formation, elongation, and rupture at the tip/substrate interface are elucidated by simulation results for the unloading process. It is shown that energy dissipation decreases as the substrate temperature increases and the energy consumed by irreversible deformation is always greater than that due to heating. read less NOT USED (low confidence) R. Devanathan, T. D. Rubia, and W. J. Weber, “Displacement threshold energies in β-SiC,” Journal of Nuclear Materials. 1998. link Times cited: 141 NOT USED (low confidence) R. Smith, P. E. Rhodes, and J. Walls, “Modelling the interaction of silane and disilane with Si100(2×1) using classical many-body potentials,” Computational Materials Science. 1998. link Times cited: 0 NOT USED (low confidence) F. Aumayr, G. Betz, T. Märk, P. Scheier, and H. Winter, “Electron emission from a clean gold surface bombarded by slow multiply charged fullerenes,” International Journal of Mass Spectrometry and Ion Processes. 1998. link Times cited: 19 NOT USED (low confidence) P. Kelires, “Simulations of Carbon Containing Semiconductor Alloys:. Bonding, Strain Compensation, and Surface Structure,” International Journal of Modern Physics C. 1998. link Times cited: 19 Abstract: This paper reviews recent Monte Carlo simulations within the… read moreAbstract: This paper reviews recent Monte Carlo simulations within the empirical potential approach, which give insights into fundamental aspects of the bulk and surface structure of group-IV semiconductor alloys containing carbon. We focus on the binary Si1-xCx and ternary Si1-x-yGexCy alloys strained on silicon substrates. The statistical treatment of these highly strained alloys is made possible by using the semigrand canonical ensemble. We describe here improvements in the algorithm which considerably speed up the method. We show that the identity switches, which are the basic ingredients in this statistical ensemble, must be accompanied by appropriate relaxations of nearest neighbors in order to reach "quasiequilibrium" in metastable systems with large size mismatch between the constituent atoms. This effectively lowers the high formation energies and large barriers for diffusion which make molecular dynamics methods impractical for this problem. The most important findings of our studies are: (a) The prediction of a repulsive Ge–C interaction and of a preferential C–C interaction in the lattice. (b) The prediction for significant deviations of the structural parameters and of the elastic constants from linearly interpolated values (Vegard's law). As a result, for a given amount of carbon, strain compensation is shown to be more drastic than previously thought. (c) Investigation of the surface problem shows that the competition between the reconstruction strain field and the preferential arrangement of carbon atoms leads to new complicated structural patterns. read less NOT USED (low confidence) A. Dyson and P. V. Smith, “Empirical potential study of the chemisorption of C2H2 and CH3 on the β-SiC(001) surface,” Surface Science. 1998. link Times cited: 26 NOT USED (low confidence) J. Perlado, “Behavior and computer simulation of SiC under irradiation with energetic particles,” Journal of Nuclear Materials. 1997. link Times cited: 26 NOT USED (low confidence) T. D. Rubia, N. Soneda, M. Caturla, and E. Alonso, “Defect production and annealing kinetics in elemental metals and semiconductors,” Journal of Nuclear Materials. 1997. link Times cited: 39 NOT USED (low confidence) K. Albe, W. Möller, and K. Heinig, “Computer simulation and boron nitride,” Radiation Effects and Defects in Solids. 1997. link Times cited: 83 Abstract: This paper presents computer simulation studies of boron nit… read moreAbstract: This paper presents computer simulation studies of boron nitride using ab initio and empirical methods. Results of self-consistent DFT-LDA calculations are shown, which were performed to characterize static ground-state properties of the different BN modifications. With help of these calculations the cubic phase is predicted as stable modification under standard conditions. Furthermore an empirical interatomic potential is introduced, which was parameterized by means of ab initio results and allows a reliable description of structures and energies of B n , N m and B n N m clusters and solid modifications. Finally, using this classical forcefield a MD-simulation of N2 impact on a h-BN target is presented. read less NOT USED (low confidence) T. D. Rubia, “Defect production mechanisms in metals and covalent semiconductors,” Nuclear Instruments & Methods in Physics Research Section B-beam Interactions With Materials and Atoms. 1996. link Times cited: 14 NOT USED (low confidence) K. Beardmore and R. Smith, “Empirical potentials for C-Si-H systems with application to C60 interactions with Si crystal surfaces,” Philosophical Magazine. 1996. link Times cited: 52 Abstract: A semiempirical potential is developed for modelling both th… read moreAbstract: A semiempirical potential is developed for modelling both the chemistry and the bulk properties of C[sbnd]Si[sbnd]H systems based on the Tersoff formulation. The potentials are compared with the known energetics of small Si[sbnd]H[sbnd]C clusters with good results. The potential is used to investigate the interaction of Ca with hydrogenated crystal surfaces in the energy range 100-250 eV. The simulations show that a wide variety of interactions is possible. The molecule can stick on the surface either directly or by bouncing across the surface. Reflection from the surface is also possible. read less NOT USED (low confidence) D. Mckenzie, “Tetrahedral bonding in amorphous carbon,” Reports on Progress in Physics. 1996. link Times cited: 365 Abstract: Electron configurations close to the tetrahedral hybridizati… read moreAbstract: Electron configurations close to the tetrahedral hybridization are found in pure amorphous carbon at a concentration which depends on preparation conditions. Tetrahedral bonding at levels of approximately 80% is found in amorphous carbons formed from beams of carbon ions with energies in a `window' between 20 eV and approximately 500 eV. Suitable techniques for its formation include cathodic arc deposition, ion beam deposition and laser ablation. Similar material appears to be formed by pressure treatment of fullerene precursors and by displacement damage in diamond. Highly tetrahedral forms of amorphous carbon (ta-C) show electronic, optical and mechanical properties which approach those of diamond and are quite different from amorphous carbons with low content. Useful techniques for determining the content include electron energy loss spectroscopy, electron and neutron diffraction and Raman spectroscopy. Considerable progress has been made in the understanding of this material by simulating its structure in the computer with a range of techniques from empirical potentials to ab initio quantum mechanics. The structure shows departures from an idealized glassy state of diamond which would have a random tetrahedral network structure as used to describe amorphous silicon and germanium. A surprising feature of the structure simulated using ab initio methods is the presence of small rings containing three or four carbon atoms. The electronic and optical properties are strongly influenced by the residual of carbon. Applications to electronic devices are at an early stage with the demonstration of photoconductivity and some simple junction devices. Applications as a wear resistant coating are promising, since the theoretically predicted high values of elastic constants, comparable to but less than those of diamond, are achieved experimentally, together with low friction coefficients. read less NOT USED (low confidence) A. Richter and R. Smith, “Surface growth modes analysed with modern microscopic and computing techniques,” European Journal of Physics. 1996. link Times cited: 11 Abstract: It is demonstrated how new microscopes with atomic resolutio… read moreAbstract: It is demonstrated how new microscopes with atomic resolution in combination with modern fast computers and computational techniques can be used in a complementary way in the analysis and explanation of crystal growth on surfaces. Examples are given of spiral formation, fractal growth, fullerene formation and the growth of C60 films. Zusammenfassung. Es wird gezeigt, wie neue Mikroskopiertechniken mit atomarer Auflosung in Kombination mit modernen schnellen Computern und neuen Computertechniken genutzt werden konnen, um auf Oberflachen Kristallwachstum zu analysieren und erklaren. Beispiele fur Spiralformationen, Fraktalwachstum, Fullerenebildung und Wachstum von C60 Filmen werden diskutiert. read less NOT USED (low confidence) T. D. Rubia, J. Perlado, and M. Tobin, “Radiation effects in silicon carbide: high energy cascades and damage accumulation at high temperature,” Journal of Nuclear Materials. 1996. link Times cited: 16 NOT USED (low confidence) D. Brenner, S. Sinnott, J. Harrison, and O. Shenderova, “Simulated engineering of nanostructures,” Nanotechnology. 1996. link Times cited: 36 Abstract: Results are reported from two molecular-dynamics simulations… read moreAbstract: Results are reported from two molecular-dynamics simulations designed to yield insight into the engineering of nanometre-scale structures. The first is the initial stages of the indentation of a silicon substrate by an atomically-sharp diamond tip. Up to an indentation depth of approximately 0.6 nm the substrate responds elastically and the profile of the disturbed region of the substrate normal to the surface reflects the shape of the tip apex. The disturbed region in the plane of the surface, however, reflects the symmetry of the substrate rather than that of the tip. As indentation progresses the damage to the substrate becomes irreversible, and the profile of the damage normal to the substrate surface approximately matches that of the tip, while the in-plane profile appears roughly circular rather than displaying the symmetry of either the tip or substrate. The tip maintains its integrity throughout the simulation, which had a maximum indentation depth of 1.2 nm. The second study demonstrates patterning of a diamond substrate using a group of ethynyl radicals attached to a diamond tip. The tip is designed so that the terrace containing the radicals has an atomically-sharp protrusion that can protect the radicals during a tip crash. At contact between the tip and substrate the protrusion is elastically deformed, and five of six chemisorbed radicals abstract hydrogen atoms during the 1.25 ps the tip is in contact with the surface. Displacement of the tip an additional 2.5 A, however, results in permanent damage to the protrusion with little deformation of the substrate. read less NOT USED (low confidence) P. Kelires, “Microstructural and elastic properties of silicon-germanium-carbon alloys,” Applied Surface Science. 1996. link Times cited: 24 NOT USED (low confidence) A. Dyson and P. V. Smith, “Extension of the Brenner empirical interatomic potential to CSiH systems,” Surface Science. 1996. link Times cited: 70 NOT USED (low confidence) M. Ichimura and J. Narayan, “Atomistic study of partial misfit dislocations in Ge/Si(001) heterostructures,” Philosophical Magazine. 1996. link Times cited: 6 Abstract: The formation of partial dislocations in Ge/Si(001) structur… read moreAbstract: The formation of partial dislocations in Ge/Si(001) structures is theoretically investigated by the atomistic model. The equilibrium critical thickness of nucleation for 90° partial with an extrinsic stacking fault is about half of that for 60° perfect dislocations in the shuffle-set configuration. A 60° dislocation is predicted to be (i) in the narrowly dissociated glide-set configuration with an intrinsic stacking fault when interaction with another dislocation is absent, (ii) in the dissociated glide-set configuration with an extrinsic stacking fault when there is another 60° dislocation with parallel screw component in the vicinity, and (iii) in the undissociated configuration or in the narrowly dissociated configuration with an intrinsic fault when there is another 60° dislocation with opposite screw component in the vicinity. In the dissociated configurations, the 90° partial remains at the interface, and the 30° partial is displaced into the Ge layer in the extrinsic fault dissociation and... read less NOT USED (low confidence) R. Smith and K. Beardmore, “Molecular dynamics studies of particle impacts with carbon-based materials,” Thin Solid Films. 1996. link Times cited: 73 NOT USED (low confidence) X. Jian-jun and Z. Kaiming, “BAND STRUCTURES OF Si-C AND Si-C-Ge ALLOYS,” Acta Physica Sinica (overseas Edition). 1995. link Times cited: 0 Abstract: Band structures of Si-C and Si-C-Ge alloys are calculated by… read moreAbstract: Band structures of Si-C and Si-C-Ge alloys are calculated by using the ab initio LMTO (linear muffin-tin orbital) method within the framework of atomic-sphere approximation. The effects of different atomic configuration and lattice relaxation on the band structure of alloys are taken into account. The results show that for large concentrations of C in Si and Si-Ge, the band gap increases monotonically, while for small concentrations of C in Si and Si-Ge, the band gap shrinks. The lattice relaxation further reduces the band gap. The possible explanations for the reduction of band gap of Si-C and Si-C-Ge alloys are presented. read less NOT USED (low confidence) R. Smith, K. Beardmore, and A. Gras-marti, “Molecular dynamics simulations of particle-surface interactions,” Vacuum. 1995. link Times cited: 4 NOT USED (low confidence) M. Ichimura and J. Narayan, “NEGATIVE SURFACE ENERGY CHANGE ASSOCIATED WITH STEP FORMATION CAUSED BY MISFIT DISLOCATION NUCLEATION IN SEMICONDUCTOR HETEROSTRUCTURES,” Philosophical Magazine. 1995. link Times cited: 12 Abstract: We have calculated the surface energy change due to step for… read moreAbstract: We have calculated the surface energy change due to step formation caused by misfit dislocation nucleation in thin-film semiconductor heterostructures. It is found that the surface energy change is negative for compressive misfit stress in the heteroepitaxial film, while it is positive for tensile misfit stress. This conclusion is in contrast to the classical model where the step formation energy is always positive and independent of the sign of the misfit. The calculated energy change is qualitatively explained by counting the number of dangling bonds on the surface. Using atomistic simulations, we have calculated the critical thickness of dislocation nucleation taking into account the surface energy change, and found that it varied from 4 nm for Ge films on Si(001) substrates to 6 nm for Si films on Ge(001) substrates having the same misfit. read less NOT USED (low confidence) M. Sayed, J. Jefferson, A. Walker, and A. Cullis, “Computer simulation of atomic displacements in Si, GaAs, and AlAs,” Nuclear Instruments & Methods in Physics Research Section B-beam Interactions With Materials and Atoms. 1995. link Times cited: 35 NOT USED (low confidence) M. Sayed, J. Jefferson, A. Walker, and A. Cullis, “Molecular dynamics simulations of implantation damage and recovery in semiconductors,” Nuclear Instruments & Methods in Physics Research Section B-beam Interactions With Materials and Atoms. 1995. link Times cited: 35 NOT USED (low confidence) P. Ashu, J. Jefferson, A. Cullis, W. Hagston, and C. Whitehouse, “Molecular dynamics simulation of (100)InGaAs/GaAs strained-layer relaxation processes,” Journal of Crystal Growth. 1995. link Times cited: 38 NOT USED (low confidence) R. M. MV and Atwater, “Empirical interatomic potential for Si-H interactions.,” Physical review. B, Condensed matter. 1995. link Times cited: 99 Abstract: An empirical TersofF-type interatomic potential has been dev… read moreAbstract: An empirical TersofF-type interatomic potential has been developed for describing Si-H interactions. The potential gives a reasonable fit to bond lengths, angles and energetics of silicon hydride molecules and hydrogen-terminated silicon surfaces. The frequencies of most vibrational modes are within 15% of the experimental and ab initio theory values. The potential is computationally efficient and suitable for molecular dynamics investigations of various processing treatments of hydrogen-terminated silicon surfaces. read less NOT USED (low confidence) D. Lynch, N. Troullier, J. Kress, and L. Collins, “Quantum molecular dynamics simulations of liquid alkalies,” Journal of Chemical Physics. 1994. link Times cited: 6 Abstract: We employ a unified molecular dynamics (MD), quantum mechani… read moreAbstract: We employ a unified molecular dynamics (MD), quantum mechanical approach to simulate the behavior of large collections of atoms at finite temperature. The nuclei are moved according to classical mechanics while the forces are computed via quantum mechanical models. Two approaches have been used: (1) the extended Huckel method, which is an approximate molecular orbital approach and (2) density functional theory based on the local density approximation and plane wave pseudopotential formulation. We compute properties from the MD trajectories of up to 4 ps duration for samples containing up to 250 atoms of lithium, sodium, and potassium. These results are compared to both previous calculations and experimental results. read less NOT USED (low confidence) T. Ohira, T. Inamuro, and T. Adachi, “Molecular dynamics simulation of amorphous silicon with Tersoff potential,” Solar Energy Materials and Solar Cells. 1994. link Times cited: 12 NOT USED (low confidence) T. Halicioǧlu, “Binding energies for carbon atoms and clusters deposited on the Si(100) surface,” Thin Solid Films. 1994. link Times cited: 2 NOT USED (low confidence) J. Wong et al., “The threshold energy for defect production in SiC : a molecular dynamics study,” Journal of Nuclear Materials. 1994. link Times cited: 26 NOT USED (low confidence) F. Huaxiang, Y. Ling, and X. Xide, “Optical properties for graphene microtubules of different geometries,” Solid State Communications. 1994. link Times cited: 3 NOT USED (low confidence) L. Miller, D. Brice, A. Prinja, and S. T. Picraux, “Molecular dynamics simulations of bulk displacement threshold energies in Si,” Radiation Effects and Defects in Solids. 1994. link Times cited: 19 Abstract: Molecular dynamics (MD) calculations of the bulk threshold d… read moreAbstract: Molecular dynamics (MD) calculations of the bulk threshold displacement energies in single crystal silicon are carried out using the Tersoff potential. The threshold values are angularly dependent and typically vary from 10 to 20 eV for initial primary recoil momentum vectors near open directions in the lattice. An analytic representation of the angular dependence of the threshold values about the and is developed to facilitate comparison with experiment read less NOT USED (low confidence) A. El-Azab and N. Ghoniem, “Molecular dynamics simulations of low energy cascades in β-SiC,” Radiation Effects and Defects in Solids. 1994. link Times cited: 0 Abstract: The dynamics of point defect production in β-SiC is studied … read moreAbstract: The dynamics of point defect production in β-SiC is studied using the Molecular Dynamics (MD) technique. A hybrid pair/three-body potential developed by E. Pearson et al. 10 is used to model interatomic forces. The bulk displacement energies are found for Si and C atoms along selected crystallographic directions within the 〈111〉 tetrahedral gaps. It is found that Si atoms have higher displacement energies than C atoms for all directions. Si displacement energy is found to be ∼52 eV, while that of C is only ∼10 eV through the 〈111〉 gap. Focused cascades along the close-packed [111] direction contribute to displacements in β-SiC but, replacement collision sequences are not likely to occur. Displaced atoms come to equilibrium in hexagonal interstitial sites between the (111) planes in most cases. Also, trivacancies tend to occur on the (111) carbon planes. The equilibrium cascade configurations are observed to be highly non-stoichiometric with the majority of displacements being of C type. read less NOT USED (low confidence) W. Möller, “Computer simulation of ion-beam assisted film growth,” Nuclear Instruments & Methods in Physics Research Section B-beam Interactions With Materials and Atoms. 1994. link Times cited: 1 NOT USED (low confidence) T. Kaplan, M. Chisholm, and M. Mostoller, “Simulations of the dislocation array at Ge/Si interfaces,” MRS Proceedings. 1993. link Times cited: 0 Abstract: When Ge is grown epitaxially on Si(001), the 4% mismatch bet… read moreAbstract: When Ge is grown epitaxially on Si(001), the 4% mismatch between the lattice parameters of Ge and Si can produce a regular two-dimensional grid of (a/2) [1,{plus_minus}1,0] edge dislocations at the interface, a checkerboard with a spacing of {approximately} 100 {Angstrom}. We have performed classical molecular dynamical simulations of this checkboard in large microcrystals. Results show the expected 5-fold plus 7-fold ring structure at the cores of the individual dislocations, and a new closed symmetric structure of 18 atoms at their intersections. Tetrahedral coordination is everywhere retained, with relatively small changes in the bond lengths of less than 10 and in the bond angles of less than 25%. The energetics and dislocation offset of the system are explored for the Stillinger-Weber and Tersoff potentials. read less NOT USED (low confidence) P. Kelires and P. Denteneer, “Theory of electronic properties of amorphous silicon-carbon alloys: Effects of short-range disorder,” Solid State Communications. 1993. link Times cited: 19 NOT USED (low confidence) S. Falabella, “Fabrication of amorphous diamond films,” Thin Solid Films. 1993. link Times cited: 28 NOT USED (low confidence) A. El-Azab and N. Ghoniem, “Molecular dynamics study of the displacement threshold surfaces and the stability of Frenkel pairs in β-SiC,” Journal of Nuclear Materials. 1992. link Times cited: 22 NOT USED (low confidence) W. G. Hoover and W. G. Hoover, “Nonequilibrium molecular dynamics,” Nuclear Physics. 1992. link Times cited: 2 NOT USED (low confidence) S. P. Chen, “Local volume potentials for actinide metals,” Journal of Alloys and Compounds. 1992. link Times cited: 4 NOT USED (low confidence) J. Shaffer, A. Chakraborty, M. Tirrell, H. Davis, and J. L. Martins, “The nature of the interactions of poly(methyl methacrylate) oligomers with an aluminum surface,” Journal of Chemical Physics. 1991. link Times cited: 22 Abstract: Polymer–metal interfaces are of increasing technological imp… read moreAbstract: Polymer–metal interfaces are of increasing technological importance in a variety of applications. These interfaces are characterized by specific interactions between functional groups of the organic polymer and the metallic substrate. In order to study the structure of these interfaces at the molecular level, the energetics of the segment–surface interactions must be well characterized. We have used density functional theory to investigate the interactions of poly(methyl methacrylate) (PMMA) oligomers with aluminum surfaces. The aluminum surface is represented by the simple jellium model. The energetics of the interactions between the organic molecules and the aluminum surface are calculated as a function of the orientation with respect to the surface of the organic molecule and various internal degrees of freedom. The computed energy hypersurfaces exhibit a rich structure characterized by several energy minima and barriers. Implications of such an energy hypersurface for the architecture of long chain mo... read less NOT USED (low confidence) P. Ashu, C. Matthai, and T. Shen, “Dynamics of atoms on silicon substrates,” Surface Science. 1991. link Times cited: 1 NOT USED (low confidence) J. H. Wilson, J. Todd, and A. Sutton, “Modelling of silicon surfaces: a comparative study,” Journal of Physics: Condensed Matter. 1990. link Times cited: 25 Abstract: A theoretical study of the Si(110)-1*1, Si(100)-2*1, Si(111)… read moreAbstract: A theoretical study of the Si(110)-1*1, Si(100)-2*1, Si(111)-2*1 and Si(113)-1*1 surfaces is presented. The authors use both the semi-empirical tight-binding bond model and the classical potential of Stillinger and Weber to describe interatomic forces. Energy minimization calculations are carried out in order to deduce the stable atomic configurations. The authors show that the semi-empirical tight-binding approach can produce results in reasonable agreement with other experimental and theoretical work and they demonstrate that charge transfer is not an important factor governing the stability of these surfaces. In a comparative study, involving not only static energy minimization but also Monte Carlo simulated annealing, the authors show why the classical potential does not perform well in describing surface atomic structure. read less NOT USED (low confidence) T. D. de la Rubia and M. Guinan, “Progress in the development of a molecular dynamics code for high-energy cascade studies,” Journal of Nuclear Materials. 1990. link Times cited: 146 NOT USED (low confidence) S. Hu, C. Zhao, and X. Gu, “Phonon non-equilibrium effects on interface thermal resistance between graphene and substrates,” International Journal of Thermal Sciences. 2024. link Times cited: 0 NOT USED (low confidence) L. Feng, X. Zhang, W. Li, M. Liu, and X. Yao, “Multiple structural phase transitions in single crystal silicon subjected to dynamic loading,” Scripta Materialia. 2024. link Times cited: 0 NOT USED (low confidence) S. Li et al., “Modeling and investigation of fluid flow affecting thermal boundary conductance at the solid-fluid interface,” International Journal of Heat and Mass Transfer. 2023. link Times cited: 1 NOT USED (low confidence) F. Liu et al., “Insights into the interfacial thermal transport properties of in-plane graphene/h-BN heterostructure with grain boundary,” International Journal of Heat and Mass Transfer. 2023. link Times cited: 1 NOT USED (low confidence) X.-T. Vu, V.-H. Nguyen, T.-V. Tran, Q. Nguyen, and D.-Q. Doan, “Mechanical characteristics and deformation behavior of Al polycrystal reinforced with SiC particles,” Journal of Physics and Chemistry of Solids. 2023. link Times cited: 1 NOT USED (low confidence) A. Galashev, “Molecular dynamic study of the applicability of silicene lithium ion battery anodes: A review,” Electrochemical Materials and Technologies. 2023. link Times cited: 0 Abstract: Lithium-ion batteries (LIBs) are the main energy storage dev… read moreAbstract: Lithium-ion batteries (LIBs) are the main energy storage devices that have found wide application in the electrical, electronics, automotive and even aerospace industries. In practical applications, silicene has been put forward as an active anode material for LIBs. This is facilitated by its high theoretical capacitance, strength, and small volume change during lithiation. Thin-film materials containing two-layer silicene and intended for use in the LIB anode have been studied by the method of classical molecular dynamics. Among the important characteristics obtained is the fillability of the silicene anode (under the influence of an electric field), which was determined depending on the type of vacancy defects in silicene and the type of substrate used. Both metallic (Ag, Ni, Cu, Al) and non-metallic (graphite, silicon carbide) substrates are considered. The behavior of the self-diffusion coefficient of intercalated lithium atoms in a silicene channel as it is filled has been studied. Based on the construction of Voronoi polyhedra, the packing of lithium atoms and the state of the walls in the channel has been studied in detail. The change in the shape of silicene sheets, as well as the stresses in them caused by lithium intercalation, are analyzed. It has been established that two-layer silicene with monovacancies on a nickel substrate is the most optimum variant of the anode material. The results of this work may be useful in the development of new anode materials for new generation LIBs. read less NOT USED (low confidence) M. Steinhauser, “Computational Multiscale Modeling of Fluids and Solids,” Graduate Texts in Physics. 2022. link Times cited: 30 NOT USED (low confidence) X. Ding et al., “Efficient and accurate atomistic modeling of dopant migration using deep neural network,” Materials Science in Semiconductor Processing. 2022. link Times cited: 2 NOT USED (low confidence) K. Zhou and B. Liu, “Potential energy functions,” Molecular Dynamics Simulation. 2022. link Times cited: 0 NOT USED (low confidence) Y. Liu, J. Zhang, G. Ren, and A. Chernatynskiy, “Utilizing twin interfaces to reduce lattice thermal conductivity of superlattice,” International Journal of Heat and Mass Transfer. 2022. link Times cited: 5 NOT USED (low confidence) V.-T. Nguyen and T. Fang, “Revealing the mechanisms for inactive rolling and wear behaviour on chemical mechanical planarization,” Applied Surface Science. 2022. link Times cited: 7 NOT USED (low confidence) L. Cui, X. Guo, Q. Yu, G. Wei, and X. Du, “Ultralow and anisotropic thermal conductivity in graphene phononic metamaterials,” International Journal of Heat and Mass Transfer. 2022. link Times cited: 1 NOT USED (low confidence) Y. Liu, Y. Li, K. Shen, Y. Qiu, and J. Xie, “Further Decrease of the Thermal Conductivity of Superlattice Through Embedding Nanoparticle,” SSRN Electronic Journal. 2022. link Times cited: 1 NOT USED (low confidence) S. I. Kundalwal and V. Choyal, “Enhancing the piezoelectric properties of boron nitride nanotubes through defect engineering,” Physica E-low-dimensional Systems & Nanostructures. 2021. link Times cited: 12 NOT USED (low confidence) F. Valencia et al., “Nanoindentation of Amorphous Carbon: a combined experimental and simulation approach,” Acta Materialia. 2021. link Times cited: 21 NOT USED (low confidence) A. Panda et al., “Molecular dynamics studies on formation of stacking fault tetrahedra in FCC metals,” Computational Materials Science. 2021. link Times cited: 11 NOT USED (low confidence) F. Rodríguez-Hernández, M. Papanikolaou, and K. Salonitis, “Atomistic Modelling of Nanocutting Processes.” 2021. link Times cited: 0 NOT USED (low confidence) P. Singh and I. S. Chahal, “Atomistic Study on the Mechanical Behavior of Silicon-Base Nanotubes.” 2021. link Times cited: 0 Abstract: Received Feb 10, 2021 Revised Mar 16, 2021 Accepted May 14, … read moreAbstract: Received Feb 10, 2021 Revised Mar 16, 2021 Accepted May 14, 2021 Recently, silicon nanotubes (SiNTs) have been successfully synthesized and have attracted many researchers to work on the different aspects of them. In the present study, the stress-strain curve along with the Young’s modulus as a significant mechanical property of single walled silicon nanotubes at different diameters are determined. The simulation is performed by the use of molecular dynamics based on the Tersoff-Brenner many-body potential energy function. The results of the total strain energy of nanotubes as an accurate and effective methodology are used to establish appropriate expressions for evaluating Young’s modulus of the nanotubes. Keyword: read less NOT USED (low confidence) S. Chowdhury et al., “Mechanical Properties and Strain Transfer Behavior of Molybdenum Ditelluride (MoTe2) Thin Films,” Journal of Engineering Materials and Technology. 2021. link Times cited: 16 Abstract:
Transition metal dichalcogenides (TMDs) offer superior pro… read moreAbstract:
Transition metal dichalcogenides (TMDs) offer superior properties over conventional materials in many areas such as in electronic devices. In recent years, TMDs have been shown to display a phase switching mechanism under the application of external mechanical strain, making them exciting candidates for phase change transistors. Molybdenum ditelluride (MoTe2) is one such material that has been engineered as a strain-based phase change transistor. In this work, we explore various aspects of the mechanical properties of this material by a suite of computational and experimental approaches. First, we present parameterization of an interatomic potential for modeling monolayer as well as multilayered MoTe2 films. For generating the empirical potential parameter set, we fit results from density functional theory calculations using a random search algorithm known as particle swarm optimization. The potential closely predicts structural properties, elastic constants, and vibrational frequencies of MoTe2 indicating a reliable fit. Our simulated mechanical response matches earlier larger scale experimental nanoindentation results with excellent prediction of fracture points. Simulation of uniaxial tensile deformation by molecular dynamics shows the complete non-linear stress-strain response up to failure. Mechanical behavior, including failure properties, exhibits directional anisotropy due to the variation of bond alignments with crystal orientation. Furthermore, we show the deterioration of mechanical properties with increasing temperature. Finally, we present computational and experimental evidence of an extended c-axis strain transfer length in MoTe2 compared to TMDs with smaller chalcogen atoms. read less NOT USED (low confidence) B. Sharma and A. Parashar, “Effect of defects and functionalization on mechanical and fracture properties of two-dimensional nanomaterials,” Fundamentals and Properties of Multifunctional Nanomaterials. 2021. link Times cited: 0 NOT USED (low confidence) M. Wang, Y. Huang, J. Li, L. Xu, and F. Zhu, “Local Stress Field in Wafer Thinning Simulations with Phase Space Averaging,” Computers, Materials & Continua. 2021. link Times cited: 1 Abstract: : From an ingot to a wafer then to a die, wafer thinning pla… read moreAbstract: : From an ingot to a wafer then to a die, wafer thinning plays an important role in the semiconductor industry. To reveal the material removal mechanism of semiconductor at nanoscale, molecular dynamics has been widely used to investigatethe grindingprocess. However, most simulationanal-yses were conducted with a single phase space trajectory, which is stochastic and subjective. In this paper, the stress field in wafer thinning simulations of 4H-SiC was obtained from 50 trajectories with spatial averaging and phase space averaging. The spatialaveraging was conducted on a uniform spatial grid for each trajectory. A variable named mask was assigned to the spatial point to reconstruct the shape of the substrate. Different spatial averaging parameters were applied and compared. The result shows that the summation of Voronoi volumes of the atoms in the averaging domain is more appropriate for spatial averaging. The phase space averaging was conducted with multiple trajectories after spatial averaging. The stress field converges with increasing the number of trajectories. The maximum and average relative difference (absolute value) of Mises stress was used as the convergence criterion. The obtained hydrostatic stress in the compression zone is close to the phase transition pressure of 4H-SiC from first principle calculations. read less NOT USED (low confidence) Z. Xiu-yu, C. Xiao-fei, W. Hao, G. Xun, and X. Jian-Ming, “Molecular Dynamics Analysis of Chemical Disorders Induced by Irradiated Point Defects in 6H-SiC,” Journal of Inorganic Materials. 2020. link Times cited: 1 Abstract: : To cooperate with studying the influence of chemical disor… read moreAbstract: : To cooperate with studying the influence of chemical disorder on the conductivity of 6H-SiC, the linear collision cascade of 6H-SiC was simulated by the classical molecular dynamics with LAMMPS. Evolution process of main point defects in 6H-SiC during single linear cascade collision and multiple linear cascade collisions under different energy and different types of PKA (Primary Knock-on Atom) is given, while chemical disorder and the final proportion of each of the point defects are counted. The results show that the Si–Si bond generated by the linear cascade collision is easier to form and more stable than the C–C bond. The Si–Si bond is mainly formed by the antisite defect Si C , the C–C bond is mainly formed by the C-interstitial cluster. Their chemical disorder and point defect yield are affected by the type and initial energy of PKA. However, the proportion of each point defect is almost unchanged. read less NOT USED (low confidence) V. Choyal, V. Choyal, S. Nevhal, A. Bergaley, and S. I. Kundalwal, “Effect of aspects ratio on Young’s modulus of boron nitride nanotubes: A molecular dynamics study,” Materials Today: Proceedings. 2020. link Times cited: 15 NOT USED (low confidence) I. Boustani, “Molecular Modelling and Synthesis of Nanomaterials: Applications in Carbon- and Boron-based Nanotechnology,” Molecular Modelling and Synthesis of Nanomaterials. 2020. link Times cited: 3 NOT USED (low confidence) Y. A. Kosevich and I. Strelnikov, “Extraordinary phonon transmission through hidden lattice-wave nanochannels as resonance quantum phonon tunneling.” 2020. link Times cited: 2 NOT USED (low confidence) R. Evarestov, “Simulations of Nanotube Properties.” 2020. link Times cited: 0 NOT USED (low confidence) K. Termentzidis and D. Lacroix, “Tuning thermal transport in nanowires: molecular dynamics and Monte Carlo simulations.” 2020. link Times cited: 0 NOT USED (low confidence) I. Boustani, “Carbon and Inorganic Binary Clusters.” 2020. link Times cited: 0 NOT USED (low confidence) H. S. Jahromi and A. Setoodeh, “Longitudinal, Transverse, and Torsional Free Vibrational and Mechanical Behavior of Silicon Nanotubes Using an Atomistic Model,” Materials Research-ibero-american Journal of Materials. 2020. link Times cited: 13 NOT USED (low confidence) L. Snead, Y. Katoh, and T. Nozawa, “Radiation Effects in SiC and SiC–SiC,” Comprehensive Nuclear Materials. 2020. link Times cited: 10 NOT USED (low confidence) I. Boustani, “Molecular Modelling,” Molecular Modelling and Synthesis of Nanomaterials. 2020. link Times cited: 0 NOT USED (low confidence) K. Liu, H. Wang, and X. Zhang, “Molecular Dynamics Simulation of Ductile Mode Cutting,” Springer Series in Advanced Manufacturing. 2019. link Times cited: 1 NOT USED (low confidence) V. Vijayaraghavan and L. Zhang, “Computational Modelling of Hybrid Boron Nitride-Carbon Nanosheets,” Materials Today: Proceedings. 2019. link Times cited: 0 NOT USED (low confidence) P. Budarapu, X. Zhuang, T. Rabczuk, and S. Bordas, “Multiscale modeling of material failure: Theory and computational methods,” Advances in Applied Mechanics. 2019. link Times cited: 37 NOT USED (low confidence) A. Bisht, A. Roy, U. S. Dixit, S. Suwas, and V. Silberschmidt, “Small-Scale Machining Simulations,” Lecture Notes on Multidisciplinary Industrial Engineering. 2019. link Times cited: 0 NOT USED (low confidence) L. Zheng, A. A. Alhossary, C. Kwoh, and Y. Mu, “Molecular Dynamics and Simulation,” Encyclopedia of Bioinformatics and Computational Biology. 2019. link Times cited: 17 NOT USED (low confidence) L. Zhang, “Mechanics of Carbon Nanotubes and Their Composites,” Handbook of Mechanics of Materials. 2019. link Times cited: 0 NOT USED (low confidence) M. Osman and T. Kim, “Thermal Interface Resistance Between Silicon and Single Wall Carbon Nanotubes,” Nanotube Superfiber Materials. 2019. link Times cited: 0 NOT USED (low confidence) S. Shafraniuk, “Contribution of many-body effects into thermoelectricity and heat transport in graphene.” 2018. link Times cited: 0 NOT USED (low confidence) T. Grieb et al., “Quantitative HAADF STEM of SiGe in presence of amorphous surface layers from FIB preparation.,” Ultramicroscopy. 2018. link Times cited: 14 NOT USED (low confidence) R. Promyoo, H. El-Mounayri, and M. Agarwal, “An Experimental Study to Guide AFM-Based TBN of Nanochannels.” 2018. link Times cited: 1 NOT USED (low confidence) J. Wang, R. Chen, X. Zhang, and F. Fang, “Study on machinability of silicon irradiated by swift ions,” Precision Engineering-journal of The International Societies for Precision Engineering and Nanotechnology. 2018. link Times cited: 10 NOT USED (low confidence) S. Winczewski, M. Y. Shaheen, and J. Rybicki, “Interatomic potential suitable for the modeling of penta-graphene: Molecular statics/molecular dynamics studies,” Carbon. 2018. link Times cited: 34 NOT USED (low confidence) J. Al-Ghalith and T. Dumitricǎ, “Screw-dislocated nanostructures.” 2018. link Times cited: 1 NOT USED (low confidence) Y. Xuan, D. Zhang, and L. Nastac, “An Experimental and Modeling Investigation of Al-based Nanocomposites Manufactured via Ultrasonic Cavitation and Solidification Processing,” Materials Today: Proceedings. 2018. link Times cited: 2 NOT USED (low confidence) A. Galashev and K. Ivanichkina, “Computer Study of Atomic Mechanisms of Intercalation/ Deintercalation of Li Ions in a Silicene Anode on an Ag (111) Substrate,” Journal of The Electrochemical Society. 2018. link Times cited: 27 NOT USED (low confidence) B. Schultrich, “Structure of Amorphous Carbon.” 2018. link Times cited: 2 NOT USED (low confidence) M. Khalkhali and F. Khoeini, “Impact of torsion and disorder on the thermal conductivity of Si nanowires: A nonequilibrium molecular dynamics study,” Journal of Physics and Chemistry of Solids. 2018. link Times cited: 16 NOT USED (low confidence) J. D. Lee, J. Li, Z. Zhang, and L. Wang, “Sequential and Concurrent Multiscale Modeling of Multiphysics: From Atoms to Continuum.” 2018. link Times cited: 8 NOT USED (low confidence) G. Domingues, A. Monthe, S. Guévelou, and B. Rousseau, “Study by molecular dynamics of the influence of temperature and pressure on the optical properties of undoped 3C-SiC structures,” Journal of Quantitative Spectroscopy & Radiative Transfer. 2018. link Times cited: 5 NOT USED (low confidence) P. Wang, R. Xiang, and S. Maruyama, “Thermal Conductivity of Carbon Nanotubes and Assemblies.” 2018. link Times cited: 14 NOT USED (low confidence) S. Thamaraikannan, S. Pradhan, and M. R. Sunny, “Parametric study on Topology of carbon Nanotubes Effects on Mechanical properties,” Materials Today: Proceedings. 2017. link Times cited: 0 NOT USED (low confidence) H. N. Pishkenari and P. G. Ghanbari, “Vibrational analysis of the fullerene family using Tersoff potential,” Current Applied Physics. 2017. link Times cited: 11 NOT USED (low confidence) S.-Z. Chen et al., “Breaking surface states causes transformation from metallic to semi-conducting behavior in carbon foam nanowires,” Carbon. 2017. link Times cited: 19 NOT USED (low confidence) A. Soloviev, R. Gruzdev, A. V. Derkun, and E. Lähderanta, “Identification of Graphene Properties in the Framework of Molecular Dynamics.” 2017. link Times cited: 0 NOT USED (low confidence) A. D. Bobadilla and J. Seminario, “In Silico Assembly of Carbon-Based Nanodevices.” 2016. link Times cited: 0 NOT USED (low confidence) X. Liu, G. Zhang, Q. Pei, and Y.-W. Zhang, “Surface morphology and strain coupling effects on phonon transport in silicon nanowires,” Materials Today: Proceedings. 2016. link Times cited: 5 NOT USED (low confidence) X. Han, “Mechanism of nanomachining semiconductor and ceramic blades for surgical applications.” 2016. link Times cited: 0 NOT USED (low confidence) R. Jones, C. Weinberger, S. Coleman, and G. Tucker, “Introduction to Atomistic Simulation Methods.” 2016. link Times cited: 1 NOT USED (low confidence) S. Thamaraikannan and S. Pradhan, “Atomistic Study of Carbon Nanotubes: Effect of Cut-Off Distance.” 2016. link Times cited: 6 NOT USED (low confidence) R. Jones, J. Templeton, and J. Zimmerman, “Principles of Coarse-Graining and Coupling Using the Atom-to-Continuum Method.” 2016. link Times cited: 6 NOT USED (low confidence) W. Wesch, T. Steinbach, and M. Ridgway, “Swift Heavy Ion Irradiation of Amorphous Semiconductors.” 2016. link Times cited: 3 NOT USED (low confidence) A. Galashev, “The Spectral Properties of (SiO 2 ) n , (GaN) m , (GaAs) m , (SiO 2 ) n (GaN) m , and (SiO 2 ) n (GaAs) m Nanoparticles: Computer Experiment.” 2016. link Times cited: 0 NOT USED (low confidence) X. Guo, “The Study of Diamond Graphitization under the Action of Iron-based Catalyst,” Journal of Mechanical Engineering. 2015. link Times cited: 12 Abstract: In order to get the graphitization mechanism of diamond unde… read moreAbstract: In order to get the graphitization mechanism of diamond under the action of iron-based catalyst, a three-dimensional molecular dynamics (MD) simulation is performed on a particular model containing iron and diamond atoms. And the friction chemical polishing experiments for the chemical vapor deposition (CVD) diamond is conducted to validate the catalytic action of the iron-based metal on diamond graphitization. The results of molecular dynamics simulation show that the presence of iron atoms will reduce the transformation temperature of diamond graphitization. By analyzing the microstructure, the graphitization mechanism with catalyst can be concluded that the chemical bonds are formed by the interaction between the unpaired electrons in the valence shell of iron atoms and the electrons of diamond atoms, which will attract the diamond atoms and make them become graphite structure gradually. For the mechanism of the catalysis of iron for diamond graphitization, there are two critical reasons. On one hand, there are unpaired electrons in the valence shell of the catalytic metal atoms. On the other hand, the structures of the catalytic metal and the diamond conform to the principle of alignment. The experimental results further validate the correctness of the simulation conclusion. Therefore it is concluded that the presence of iron will accelerate the process of diamond graphitization, which is good for the ultra-precision machining of diamond tools. read less NOT USED (low confidence) S. Goel, X. Luo, A. Agrawal, and R. Reuben, “Diamond machining of silicon: A review of advances in molecular dynamics simulation,” International Journal of Machine Tools & Manufacture. 2015. link Times cited: 314 NOT USED (low confidence) M. Schmidt, A. Ismail, and R. Sauer, “A CONTINUUM MECHANICAL SURROGATE MODEL FOR ATOMIC BEAM STRUCTURES,” International Journal for Multiscale Computational Engineering. 2015. link Times cited: 14 Abstract: Starting from a fully atomistic system, we outline a general… read moreAbstract: Starting from a fully atomistic system, we outline a general approach to obtain an approximate continuum surrogate model incorporating specific kinematic state variables. The continuum mechanical system is furnished with a hyperelastic material model. We then adapt the procedure to slender structures with beam-like character, such as Silicon nanowires or carbon nanotubes. The surrogate model can be described as a geometrically exact beam, which can be treated numerically using finite elements. Based on molecular dynamics simulations, we show how to obtain for a given atomistic beam system both a set of suitable deformed states as well as generalized stress and strain measures. Finally, we benchmark the obtained continuum model by assessing its accuracy for a beam coming into contact with an infinite Lennard-Jones wall. read less NOT USED (low confidence) U. Ray, “Investigating thermal transport in isotope substituted nanomaterials using molecular simulations.” 2015. link Times cited: 0 Abstract: ......... 23 References........ 35 CHAPTER 4. DISSIMILAR HEA… read moreAbstract: ......... 23 References........ 35 CHAPTER 4. DISSIMILAR HEAT CONDUCTION MECHANISMS IN ANALOGOUS 2D NANOMATERIALS WITH ISOTOPE SUBSTITUTION: GRAPHENE VERSUS SILICENE 37 Abstract 37 Results and Discussion 39 37 Results and Discussion 39 read less NOT USED (low confidence) A. Galashev, “The Spectral Properties of (SiO2) n , (GaN) m , (GaAs) m , (SiO2) n (GaN) m , and (SiO2) n (GaAs) m Nanoparticles: Computer Experiment.” 2015. link Times cited: 0 NOT USED (low confidence) S. Sarikurt, C. Sevik, A. Kinaci, J. Haskins, and T. Çagin, “Influence of Core-Shell Architecture Parameters on Thermal Conductivity of Si-Ge Nanowires,” MRS Proceedings. 2015. link Times cited: 0 Abstract: In this work, we investigate the influence of the core-shell… read moreAbstract: In this work, we investigate the influence of the core-shell architecture on nanowire (1D) thermal conductivity targeting to evaluate its validity as a strategy to achieve a better thermoelectric performance. To obtain the thermal conductivity values, equilibrium molecular dynamic simulations is applied to Si and Ge systems that are chosen to form core-shell nanostructures. To explore the parameter space, we have calculated thermal conductivity values of the Si-core/Ge-shell and Ge-core/Si-shell nanowires at different temperatures for different cross-sectional sizes and different core contents. Our results indicate that (1) increasing the cross-sectional area of pristine Si and pristine Ge nanowire increases the thermal conductivity (2) increasing the Ge core size in the Si-core/Ge-shell structure results in a decrease in the thermal conductivity values at 300 K (3) thermal conductivity of the Si-core/Ge-shell nanowires demonstrates a minima at specific core size (4) no significant variation in the thermal conductivity observed in nanowires for temperature values larger than 300 K (5) the predicted thermal conductivity around 10 W m −1 K −1 for the Si and Ge core-shell architecture is still high to get desired ZT values for thermoelectric applications. On the other hand, significant decrease in thermal conductivity with respect to bulk thermal conductivity of materials and pristine nanowires proves that employing core–shell architectures for other possible thermoelectric material candidates would serve valuable opportunities to achieve a better thermoelectric performance. read less NOT USED (low confidence) C. Ciobanu, “The mechanical and electronic properties of two-dimensional superlattices.” 2015. link Times cited: 0 NOT USED (low confidence) M. Ganchenkova and R. Nieminen, “Mechanical Properties of Silicon Microstructures.” 2015. link Times cited: 4 NOT USED (low confidence) S. Caravati, G. Sosso, and M. Bernasconi, “Functional Properties of Phase Change Materials from Atomistic Simulations.” 2015. link Times cited: 0 NOT USED (low confidence) T. Sinno, “Atomistic Calculation of Defect Thermodynamics in Crystalline Silicon.” 2015. link Times cited: 0 NOT USED (low confidence) T. Yamamoto, K. Sasaoka, and S. Watanabe, “Surface functionalization–induced thermal conductivity attenuation in silicon nanowires: A molecular dynamics study.” 2015. link Times cited: 0 NOT USED (low confidence) V. Hizhnyakov, M. Haas, A. Shelkan, and M. Klopov, “Standing and Moving Discrete Breathers with Frequencies Above the Phonon Spectrum.” 2015. link Times cited: 9 NOT USED (low confidence) Z.-J. Wu, “The mechanism governing cutting of hard materials with hybrid Laser/Waterjet system through controlled fracture.” 2015. link Times cited: 3 Abstract: ............................................................… read moreAbstract: ........................................................................................................ 79 5. read less NOT USED (low confidence) K. Gordiz and A. Henry, “Calculation of Modal Contributions to Heat Transfer across Si/Ge Interfaces,” MRS Proceedings. 2015. link Times cited: 1 NOT USED (low confidence) A. Schliwa, G. Hönig, and D. Bimberg, “Electronic Properties of III-V Quantum Dots.” 2014. link Times cited: 21 NOT USED (low confidence) H. J. Liu, “Thermoelectric Properties of Carbon Nanotubes and Related One-Dimensional Structures.” 2014. link Times cited: 1 NOT USED (low confidence) J. E. Lowther, “3.02 – From Diamond to Superhard Borides and Oxides.” 2014. link Times cited: 3 NOT USED (low confidence) Y. Xu and G. Li, “Modeling and Analysis of Strain Effects on Thermoelectric Figure of Merit in Si/Ge Nanocomposites.” 2014. link Times cited: 1 NOT USED (low confidence) K. Mylvaganam and L. Zhang, “Effect of residual stresses on the stability of bct-5 silicon,” Computational Materials Science. 2014. link Times cited: 7 NOT USED (low confidence) M. Yasuda, S. Wakuda, Y. Asayama, H. Kawata, and Y. Hirai, “Interaction volume of electron beam in carbon nanomaterials: A molecular dynamics study,” MRS Proceedings. 2014. link Times cited: 1 NOT USED (low confidence) O. Glukhova, G. V. Savostyanov, and M. Slepchenkov, “A New Approach to Dynamical Determination of the Active Zone in the Framework of the Hybrid Model (Quantum Mechanics/ Molecular Mechanics),” Procedia Materials Science. 2014. link Times cited: 11 NOT USED (low confidence) J. Xu, “Dynamic energy dissipation using nanostructures: mechanisms and applications.” 2014. link Times cited: 0 NOT USED (low confidence) J. Shimizu, “Analysis of Grinding Mechanism of Silicon Wafer by Using Molecular Dynamics,” Journal of The Japan Society for Precision Engineering. 2014. link Times cited: 0 NOT USED (low confidence) J. L. Gomez-Ballesteros, A. Callejas-Tovar, L. Coelho, and P. Balbuena, “Molecular Dynamics Studies of Graphite Exfoliation Using Supercritical CO2.” 2014. link Times cited: 4 NOT USED (low confidence) X. Wu, H. Zhao, M. Zhong, H. Murakawa, and M. Tsukamoto, “Molecular dynamics simulation of graphene sheets joining under ion beam irradiation,” Carbon. 2014. link Times cited: 47 NOT USED (low confidence) R. Stoller and E. Zarkadoula, “Primary Radiation Damage Formation in Solids.” 2014. link Times cited: 11 NOT USED (low confidence) S. Goel, X. Luo, and R. Reuben, “Wear mechanism of diamond tools against single crystal silicon in single point diamond turning process,” Tribology International. 2013. link Times cited: 153 NOT USED (low confidence) Z. Yang and Z.-X. Lu, “Atomistic simulation of the mechanical behaviors of co-continuous Cu/SiC nanocomposites,” Composites Part B-engineering. 2013. link Times cited: 33 NOT USED (low confidence) I. Marinescu, W. Rowe, B. Dimitrov, and H. Ohmori, “7 – Molecular dynamics for nano-contact simulation.” 2013. link Times cited: 2 NOT USED (low confidence) H. Renevier and M. Proietti, “Grazing Incidence Diffraction Anomalous Fine Structure in the Study of Structural Properties of Nanostructures.” 2013. link Times cited: 6 NOT USED (low confidence) V. Tomar, “Multiscale modeling of the structure and properties of ceramic nanocomposites.” 2013. link Times cited: 0 Abstract: Abstract: One of the most recent developments in ceramics ha… read moreAbstract: Abstract: One of the most recent developments in ceramics has been the distribution of multiple phases in a ceramic composite at the nanoscopic length scale. An advanced nanocomposite microstructure such as that of polycrystalline silicon carbide (SiC)–silicon nitride (Si3N4) nanocomposites contains multiple length scales with grain boundary thickness of the order of 50 nm, SiC particle sizes of the order of 200–300 nm and Si3N4 grain sizes of the order of 0.8–1.5 μm. Designing the microstructure of such a composite for a targeted set of material properties is, therefore, a daunting task. Since the microstructure involves multiple length scales, multiscale analyses based material design is an appropriate approach for such a task. With this view, this chapter presents an overview of the current state of the art and work performed in this area. read less NOT USED (low confidence) H. Tanaka and S. Shimada, “Damage-free machining of monocrystalline silicon carbide,” Cirp Annals-manufacturing Technology. 2013. link Times cited: 55 NOT USED (low confidence) P. Klapetek, “Numerical Modeling Techniques.” 2013. link Times cited: 0 NOT USED (low confidence) O. Kwon, J. H. Lee, K.-sub Kim, and J. Kang, “Developing ultrasensitive pressure sensor based on graphene nanoribbon: Molecular dynamics simulation,” Physica E-low-dimensional Systems & Nanostructures. 2013. link Times cited: 24 NOT USED (low confidence) P. Gamallo, L. Martin-Gondre, R. Sayós, C. Crespos, and P. Larrégaray, “Potential Energy Surfaces for the Dynamics of Elementary Gas-Surface Processes.” 2013. link Times cited: 8 NOT USED (low confidence) C. Ji, “Investigation on Stress Distribution along Tool/chip Interface in Atomistic Machining Processes,” Journal of Mechanical Engineering. 2013. link Times cited: 4 Abstract: The cutting performance, cutting temperature and tool wear a… read moreAbstract: The cutting performance, cutting temperature and tool wear are influenced by the tool-chip stress distribution. The molecular dynamics simulation approach is performed to investigate the tool-chip stress distribution and friction phenomena in nano-machining of monocrystalline silicon and copper materials. Tersoff potential function is employed to model the inter-atomic force among silicon atoms, and EAM potential function is used to model the interatomic force between copper atoms, and Morse potential function is used to model the interatomic force between the workpiece atoms and cutting tool atoms. Both the relations between the contact lengths of tool-chip interface and the cutting distance, and the influence of the tool rake angle on the stress distributions are analyzed. The atom motion and interaction along the tool-chip interface are given to explain the stress distributions along tool-chip interface in the nano-machining process. The normal forces in copper exhibit a peak near the tool edge, and gradually decrease toward zero as the contact ceases to exist, while the normal forces in silicon present regular fluctuations along the tool-chip interface. The friction force in both copper and silicon all show a negative value near the cutting edge. After that, the friction force in copper reaches the maximum at a distance of two-thirds of the contact length and then gradually decreases to zero. read less NOT USED (low confidence) M. Sung, S. Paek, S.-hye Ahn, and J. H. Lee, “A study of carbon-nanotube-based nanoelectromechanical resonators tuned by shear strain,” Computational Materials Science. 2012. link Times cited: 10 NOT USED (low confidence) L. Snead, Y. Katoh, and T. Nozawa, “4.07 – Radiation Effects in SiC and SiC–SiC.” 2012. link Times cited: 22 NOT USED (low confidence) J. Kang and O. Kwon, “A molecular dynamics simulation study on resonance frequencies comparison of tunable carbon-nanotube resonators ☆,” Applied Surface Science. 2012. link Times cited: 14 NOT USED (low confidence) R. Ansari and H. Rouhi, “Analytical Treatment of the Free Vibration of Single-Walled Carbon Nanotubes Based on the Nonlocal Flugge Shell Theory,” Journal of Engineering Materials and Technology-transactions of The Asme. 2012. link Times cited: 38 NOT USED (low confidence) L. Miglio and F. Montalenti, “Modeling the evolution of germanium islands on silicon(001) thin films.” 2011. link Times cited: 3 Abstract: Abstract: Ge/Si is popularly considered as the prototypical … read moreAbstract: Abstract: Ge/Si is popularly considered as the prototypical example of a system following the Stransky–Krastanow (SK) growth modality. Despite being truly simpler than other SK systems, Ge/Si displays remarkably fascinating physics, starting from the very onset of island formation, discussed in detail in this chapter with the help of a combined theoretical and experimental analysis. Complex phenomena following nucleation of 3D structures, such as Si/Ge intermixing and island ordering, are also described and interpreted with the use of simple theory. Some recent findings, likely to trigger further research in the coming years, are finally summarized in the concluding future trends section. read less NOT USED (low confidence) M. Hu, X. Zhang, K. Giapis, and D. Poulikakos, “Atomistic Mechanisms of Enhancing Energy Conversion Efficiency of Nanostructured Thermoelectrics.” 2011. link Times cited: 0 NOT USED (low confidence) C. Lorenz and N. Doltsinis, “Molecular Dynamics Simulation: From ‘Ab Initio’ to ‘Coarse Grained.’” 2011. link Times cited: 12 NOT USED (low confidence) X. Gong et al., “Growth behavior of GaN film along non-polar [11-20] directions,” Physica B-condensed Matter. 2011. link Times cited: 6 NOT USED (low confidence) H. S. Park and P. Klein, “Multiscale Modeling of Surface Effects on the Mechanical Behavior and Properties of Nanowires.” 2010. link Times cited: 0 NOT USED (low confidence) J. Carlsson, “Simulations of the Structural and Chemical Properties of Nanoporous Carbon.” 2010. link Times cited: 4 NOT USED (low confidence) H. Bulou, C. Goyhenex, and C. Massobrio, “Surface Diffusion on Inhomogeneous Surfaces.” 2010. link Times cited: 1 NOT USED (low confidence) H. Tanaka and S. Shimada, “Atomic Scale Analyses of Material Behavior Based on Molecular Dynamics Simulation,” Journal of The Japan Society for Precision Engineering. 2010. link Times cited: 0 NOT USED (low confidence) P. Agrawal, R. Narulkar, S. Bukkapatnam, L. Raff, and R. Komanduri, “A phenomenological model of polishing of silicon with diamond abrasive,” Tribology International. 2010. link Times cited: 15 NOT USED (low confidence) M. Ganchenkova and R. Nieminen, “Chapter Eleven – Mechanical Properties of Silicon Microstructures.” 2010. link Times cited: 3 NOT USED (low confidence) J. Lin, T. Fang, C. Wu, and K.-H. Houng, “Nanotribological behavior of diamond surfaces using molecular dynamics with fractal theory and experiments,” Current Applied Physics. 2010. link Times cited: 9 NOT USED (low confidence) V. Tomar, V. Samvedi, and H.-sung Kim, “Atomistic Understanding of the Particle Clustering and Particle Size Effect on the Room Temperature Strength of SiC-Si3N4 Nanocomposites,” International Journal for Multiscale Computational Engineering. 2010. link Times cited: 7 NOT USED (low confidence) S. Sinnott, S. Heo, D. Brenner, J. Harrison, and D. Irving, “Computer Simulations of Nanometer-Scale Indentation and Friction.” 2010. link Times cited: 18 NOT USED (low confidence) F. Khademolhosseini, “NONLOCAL CONTINUUM SHELL MODELS FOR TORSION OF SINGLE-WALLED CARBON NANOTUBES.” 2009. link Times cited: 2 NOT USED (low confidence) V. Samvedi and V. Tomar, “Atomistic Simulations - Based Understanding of the Mechanism behind the Role of Second-Phase SiC Particles in Fracture Resistance of SiC-Si 3 N 4 Nanocomposites,” International Journal for Multiscale Computational Engineering. 2009. link Times cited: 11 NOT USED (low confidence) T. Inamura, Y. Shishikura, and N. Takezawa, “Digital microscope observation of the initial stage of cutting monocrystalline silicon,” Cirp Annals-manufacturing Technology. 2009. link Times cited: 5 NOT USED (low confidence) J. C. Noyola, A. Valladares, R. Valladares, and A. A. Valladares, “Could Porosity Induce Gaps in the Vibrational Density of States of Nanoporous Silicon,” MRS Proceedings. 2009. link Times cited: 0 Abstract: As in our previous work [1] nanoporous silicon periodic supe… read moreAbstract: As in our previous work [1] nanoporous silicon periodic supercells with 1000 atoms but now with 80 % porosity were constructed using the Tersoff potential and our novel approach [2]. The approach consists first in constructing a crystalline diamond-like supercell with a density (volume) close to the real value, and then lowering the density by increasing the volume, subjecting the resulting periodic supercell to Tersoff-based molecular dynamics processes at a temperature of 300 K, followed by geometry relaxation [1]. As in the ab initio approach [2] the resulting samples are also essentially amorphous and display pores along some of the crystallographic directions. We report the radial (pair) distribution function (RDF), g(r), the bond angle distribution, the pore structure where prominent and a computational prediction for the vibrational density of states for this structure. We then compare it to the 50 % porous sample presented in Ref [1]. The soft acoustic phonons are displaced towards lower energy in the 80 % porosity sample whereas the optical modes are displaced towards higher energies. The pseudo gap, existing in the 50 % porous sample, is depleted even more in the 80 % sample indicating a tendency towards the creation of a phonon gap for higher porosity materials. Some conjectures that point to the possible engineering of porous materials to produce predetermined phonon properties are discussed. read less NOT USED (low confidence) M. Luo, “Surface-induced size-dependent Young’s modulus in nanomaterials.” 2008. link Times cited: 0 Abstract: Nanowires and ultra-thin films have wide applications in the… read moreAbstract: Nanowires and ultra-thin films have wide applications in the quickly developed nanotechnology and nanoscience. However, their Young’s modulus varies with the size, which is seemingly contradictory to the conventional continuum elasticity. Investigating and understanding the underlying mechanism of the size-dependent elastic properties in nanomaterials is of both academic and practical significance. In this work, both theoretical modeling and virtual experiments have been made on this issue. A nanoelement, from the traction free bulk lattice, undergoes an initial relaxation, during which its morphology changes and energy reduces, which is an emphasis in this developed methodology and is a distinction from almost other existing models. With different definitions of surfaces and edges, two models for a nanomaterial – a nanowire or an ultra-thin film – are derived based on the same thermodynamics framework. Comparing with most of others’ treatment, Model I has an advantage to mathematically treat a surface phase to be two-dimensional and an edge phase to be one-dimensional. Under external loadings, the initial relaxed state is taken as the reference. Experimentally, relaxation and tension/compression tests in different loading directions have been conducted on SiC, Si and Cu crystalline nanowires with different cross-sectional sizes and ultra-thin films with different thicknesses by Molecular Dynamics (MD) simulations. This systematic study successfully illustrates the intrinsic mechanism of the size-dependent Young’s modulus in nanomaterials and the proposed methodology facilitate characterizing mechanical properties of nanomaterials to some extent when continuum concepts, such as, surface energy and surface elastic constants, are used. read less NOT USED (low confidence) H. Trebin et al., “Simulating structure and physical properties of complex metallic alloys.” 2008. link Times cited: 3 Abstract: An introduction is presented to numerical methods, by which … read moreAbstract: An introduction is presented to numerical methods, by which the behavior of complex metallic alloys can be simulated. We primarily consider the molecular dynamics (MD) technique as implemented in our software package IMD, where Newton’s equations of motion are solved for all atoms in a solid. After a short discourse on integration algorithms, some possible types of interactions are addressed. Already simple model potentials, as for example the Lennard-Jones-Gauss potential, can give rise to complex structures, where the characteristic length scales of the order by far exceed the range of the pair interaction. Realistic interactions are modelled by highly parametrized effective potentials, like the EAM (Embedded Atom Method) potential. Our program potfit allows to fit the parameters such that data from experiment or from ab-initio calculations are well reproduced. Several applications of the methods are outlined, notably the simulation of aluminium diffusion in quasicrystalline d-Al-Ni-Co, the computation of the phonon dispersion via the dynamical structure factor of MgZn2, the propagation of cracks in NbCr2, and an order-disorder phase transition in CaCd6. read less NOT USED (low confidence) G. Vastola, R. Gatti, A. Marzegalli, F. Montalenti, and L. Miglio, “Detailed Analysis of the Shape-dependent Deformation Field in 3D Ge Islands.” 2008. link Times cited: 12 NOT USED (low confidence) E. Machlin, “Thermodynamics of Phases having Constant Composition.” 2007. link Times cited: 0 NOT USED (low confidence) M. Yasuda, T. Majima, Y. Kimoto, K. Tada, H. Kawata, and Y. Hirai, “Molecular Dynamics Study of Electron Irradiation Damages in Carbon Nanomaterials,” MRS Proceedings. 2007. link Times cited: 1 Abstract: Molecular dynamics (MD) studies are carried out to investiga… read moreAbstract: Molecular dynamics (MD) studies are carried out to investigate the electron irradiation damages in carbon nanomaterials. The interaction between an incident electron and a carbon atom is modeled based on the Monte Carlo method using the elastic scattering cross section. The electron irradiation damages in graphen, graphite, single-walled carbon nanotube (SWNT) and carbon nanopeapod are demonstrated. The cross-links among the nanostructures caused by the knock-on effect are observed as typical damages. The dependence of the damages on the electron primary energy is also shown for the SWNT. read less NOT USED (low confidence) G. Hadjisavvas and P. Kelires, “Advances in Monte Carlo Simulations of Nanostructured Materials.” 2007. link Times cited: 0 NOT USED (low confidence) G. V. Kornich, G. Betz, V. Zaporojtchenko, and K. V. Pugina, “Energy and size effects in sputtering of surface metal nanoclusters under low energy ion bombardment,” Surface Science. 2007. link Times cited: 7 NOT USED (low confidence) F. Gou, M. Gleeson, and A. Kleyn, “CF interaction with Si(1 0 0)-(2 × 1): Molecular dynamics simulation,” Surface Science. 2007. link Times cited: 3 NOT USED (low confidence) D. Brenner, “Computer Modeling of Nanostructured Materials.” 2007. link Times cited: 5 NOT USED (low confidence) M. Osman, A. Cummings, and D. Srivastava, “Thermal Properties of Carbon Nanotubes.” 2007. link Times cited: 15 NOT USED (low confidence) H. Tanaka, S. Shimada, and L. Anthony, “Requirements for ductile-mode machining based on deformation analysis of mono-crystalline silicon by molecular dynamics simulation,” Cirp Annals-manufacturing Technology. 2007. link Times cited: 87 NOT USED (low confidence) T. Inamura, N. Takezawa, K. Shibuya, and K. Yamada, “Dynamic phenomena at mode-I crack front in silicon simulated by extended molecular dynamics,” Cirp Annals-manufacturing Technology. 2007. link Times cited: 13 NOT USED (low confidence) X. Han, “Investigation Micro-Mechanism of Dry Polishing using Molecular Dynamics Simulation Method,” 2006 1st IEEE International Conference on Nano/Micro Engineered and Molecular Systems. 2006. link Times cited: 1 Abstract: With the development of semiconductor industry, the polishin… read moreAbstract: With the development of semiconductor industry, the polishing method has already became the main stream technique in realizing the global flatness. Because of lacking investigation physical essence of polishing, the prediction power and robustness of today's material removal model is poor. In order to understanding micro-mechanism underlying planarization, the author carried out computer simulation of nanometer polishing aluminum with vacancy using molecular dynamics (MD) method. In this paper, the author investigated mechanical deformation and the machined surface integrity of crystal materials, after that explains the micro-mechanism of nanometer polishing process read less NOT USED (low confidence) J. A. Pascual-Gutiérrez, J. Murthy, and R. Viskanta, “Physical Properties of Confined Silicon Structures Using EDIP.” 2006. link Times cited: 0 Abstract: Physically confined structures such as thin films and nanowi… read moreAbstract: Physically confined structures such as thin films and nanowires are becoming increasingly important in the energy and electronics sectors. This has resulted from the ability to tailor nanostructures to yield physical properties that are significantly different from bulk. The main focus of this work is to examine how physical confinement in one and two dimensions affects the phonon wave vector spectrum within the first Brillouin zone of silicon thin films and silicon nanowires. Dispersion curves as well as density of states (DOS) are obtained using the dynamical matrix approach and a harmonic approximation to the three-body environmentally-dependent interatomic potential (EDIP). It is also shown how these changes in the phonon spectrum for both films and wires affect the volumetric specific heat with respect to bulk. The simulations are carried out assuming ideal free-standing boundary conditions. It is shown that confinement effects on the phonon specific heat are only important below 5 mm for both silicon films and wires.Copyright © 2006 by ASME read less NOT USED (low confidence) S. Izumi, K. Murai, S. Hara, T. Kumagai, and S. Sakai, “Influence of Arsenic Atoms on the Rate of Solid Phase Epitaxy: Molecular Dynamics Study,” Journal of The Society of Materials Science, Japan. 2006. link Times cited: 1 Abstract: Solid phase epitaxy (SPE) of Si is one of the most fundament… read moreAbstract: Solid phase epitaxy (SPE) of Si is one of the most fundamental processes in semiconductor fabrication techniques. Many experimental studies have been carried out for understanding the growth mechanism. However microscopic mechanism is not well understood. In this study, we investigated the effect of arsenic atoms on the rate of Si SPE by using molecular dynamics simulation. In the case of non-doped Si, an activation energy of SPE is found to be 2.1±0.5eV, which shows good agreement with the experimental result (2.7eV). It is also found that the energy barrier of crystallization in a/c interface amounts to be about 0.6eV, which corresponds to defect migration process. It indicates other processes such as defect formation also control the SPE process. The SPE rate increases by 2 times for 3 at% As doping and 100 times for 5 at% As doping and an activation energy remains to be constant. The increase in SPE rate would be enhanced by defect formation process in amorphous silicon, which reflects the increase in self-diffusion of silicon atoms caused by active As atoms. read less NOT USED (low confidence) M. Ippolito, A. Mattoni, L. Colombo, and F. Cleri, “Atomic-Scale Investigation on Fracture Toughness in Nanocomposite Silicon Carbide.” 2006. link Times cited: 0 NOT USED (low confidence) B.-M. Lee, B. S. Seong, H. Baik, S. Munetoh, and T. Motooka, “Thermal Conductivity and Natural Cooling Rate of Excimer-Laser Annealed SI: A Molecular Dynamics Study,” MRS Proceedings. 2006. link Times cited: 0 NOT USED (low confidence) P. Sonnet and L. Stauffer, “General trends of the carbon penetration in Si(0 0 1) surfaces: influences of relevant parameters,” Progress in Surface Science. 2006. link Times cited: 7 NOT USED (low confidence) K. Lee and O. Kwon, “An Atomistic Modeling for Electromechanical Nanotube Memory Study,” Journal of The Korean Institute of Electrical and Electronic Material Engineers. 2006. link Times cited: 0 Abstract: We have presented a nanoelectromechanical (NEM) model based … read moreAbstract: We have presented a nanoelectromechanical (NEM) model based on atomistic simulations. Our models were applied to a NEM device as called a nanotube random access memory (NRAM) operated by an atomistic capacitive model including a tunneling current model. We have performed both static and dynamic analyses of a NRAM device. The turn-on voltage obtained from molecular dynamics simulations was less than the half of the turn-on voltage obtained from the static simulation. Since the suspended carbon nanotube (CNT) oscillated with the amplitude for the oscillation center under an externally applied force, the quantity of the CNT-gold interaction in the static analysis was different from that in the dynamic analysis. When the gate bias was applied, the oscillation centers obtained from the static analysis were different from those obtained from the dynamics analysis. Therefore, for the range of the potential difference that the CNT-gold interaction effects in the static analysis were negligible, the vibrations of the CNT in the dynamics analysis significantly affected the CNT-gold interaction energy and the turn-on voltage. The turn-on voltage and the tunneling resistance obtained from our tunneling current model were in good agreement with previous experimental and theoretical works. read less NOT USED (low confidence) S. Heo, S. Sinnott, D. Brenner, and J. Harrison, “Computational Modeling of Nanometer-Scale Tribology.” 2005. link Times cited: 19 NOT USED (low confidence) J. Tarus, M. Tantarimäki, and K. Nordlund, “Segregation in SiGe clusters,” Nuclear Instruments & Methods in Physics Research Section B-beam Interactions With Materials and Atoms. 2005. link Times cited: 12 NOT USED (low confidence) A. Cullis, D. Norris, T. Walther, M. Migliorato, and M. Hopkinson, “The Mechanism of the Stranski-Krastanov Transition.” 2005. link Times cited: 1 NOT USED (low confidence) S. Irle, G. Zheng, M. Elstner, and K. Morokuma, “High-temperature quantum chemical molecular dynamics simulations of carbon nanostructure self-assembly processes.” 2005. link Times cited: 3 NOT USED (low confidence) J. Kang, J. H. Lee, H.-J. Lee, and H. Hwang, “Long fine single-wall carbon nanotube growth by Nano-spin-threading: model schematics and simulations,” Physica E-low-dimensional Systems & Nanostructures. 2005. link Times cited: 1 NOT USED (low confidence) G. Hadjisavvas, P. Sonnet, and P. Kelires, “Carbon-Induced Ge Dots On Si(100): Interplay of Strain and Chemical Effects.” 2005. link Times cited: 0 NOT USED (low confidence) K. Kolluri, L. Zepeda-Ruiz, C. Murthy, and D. Maroudas, “Strain Relaxation in Si 1-x Ge x Thin Films on Si (100) Substrates: Modeling and Comparisons with Experiments,” MRS Proceedings. 2005. link Times cited: 3 Abstract: Strained semiconductor thin films grown epitaxially on semic… read moreAbstract: Strained semiconductor thin films grown epitaxially on semiconductor substrates of different composition, such as Si1-xGex/Si, are becoming increasingly important in modern microelectronic technologies. In this paper, we report a hierarchical computational approach for analysis of dislocation formation, glide motion, multiplication, and annihilation in Si1-xGex epitaxial thin films on Si substrates. Specifically, a condition is developed for determining the critical film thickness with respect to misfit dislocation generation as a function of overall film composition, film compositional grading, and (compliant) substrate thickness. In addition, the kinetics of strain relaxation in the epitaxial film during growth or thermal annealing (including post-implantation annealing) is analyzed using a properly parameterized dislocation mean-field theoretical model, which describes plastic deformation dynamics due to threading dislocation propagation. The theoretical results for Si1-xGex epitaxial thin films grown on Si (100) substrates are compared with experimental measurements and are used to discuss film growth and thermal processing protocols toward optimizing the mechanical response of the epitaxial film. read less NOT USED (low confidence) M. Caturla, A. G. Martí, J. Jiménez-Rodríguez, J.-C. J. Saez, and Pérez-Martı́n M., “Molecular Dynamics Simulations of Energy Deposition in Solids,” Advances in Quantum Chemistry. 2004. link Times cited: 4 NOT USED (low confidence) M. Tanaka, K. Higashida, H. Nakashima, H. Takagi, and M. Fujiwara, “Orientation Dependence of Fracture Toughness and Its Relation to Surface Energy in Si Crystals,” Journal of The Japan Institute of Metals. 2004. link Times cited: 2 Abstract: Fracture toughness of silicon crystals has been investigated… read moreAbstract: Fracture toughness of silicon crystals has been investigated using indentation methods and their surface energies have been calculated by molecular dynamics (MD). In order to determine the most preferable fracture plane at room temperature, a conical indenter was forced into a (001) silicon wafer at room temperature. Dominant {110} cracks were introduced from the indent, indicating that fracture occurs most easily along the {110} plane among the crystallographic planes of the ‹001› zone. To confirm this orientation dependence of fracture toughness, surface energies for those planes were computed using molecular dynamics. The surface energy calculated exhibits the minimum value of 1.50 J · m-2 at the {110} plane and it increases up to 2.26 J · m-2 at the {100} plane. Fracture toughness was derived from these computed surface energies, and it was shown that KIC value for the {110} crack plane was the minimum among those for the planes of the ‹001› zone. Fracture toughness of {110} plane and the other planes of ‹001› zone were measured by the indentation fracture (IF) method. The result is qualitatively in a good agreement with those obtained from the MD, although the absolute KIC values estimated by the IF method were larger than those obtained by the calculation. read less NOT USED (low confidence) I. Marinescu, W. Rowe, B. Dimitrov, and I. Inasaki, “7 – Molecular Dynamics for Abrasive Process Simulation.” 2004. link Times cited: 0 NOT USED (low confidence) A. Karoui, “Atomistic Modeling and Simulation of Impurity Atmosphere in Silicon and Edge Dislocation Locking Effects,” MRS Proceedings. 2004. link Times cited: 0 NOT USED (low confidence) U. Kaiser, “Characterization of Low-Dimensional Structures in SiC Using Advanced Transmission Electron Microscopy.” 2004. link Times cited: 0 NOT USED (low confidence) P. Kratzer, “Atomistic Simulations of Processes at Surfaces.” 2004. link Times cited: 1 NOT USED (low confidence) R. Hayashi, K. Tanaka, S. Horiguchi, and Y. Hiwatari, “A large-scale MD simulation for formation process of carbon cluster on a parallel computer: a parallelization case-study of MD simulation of a low density physical system.” 2004. link Times cited: 0 NOT USED (low confidence) A. Karoui, G. Rozgonyi, and T. Ciszek, “Effect of Oxygen and Nitrogen Doping on Mechanical Properties of Silicon Using Nanoindentation,” MRS Proceedings. 2004. link Times cited: 1 Abstract: The effects of oxygen and nitrogen on the mechanical propert… read moreAbstract: The effects of oxygen and nitrogen on the mechanical properties of Czochralski (CZ) and float zone silicon have been studied using nano-indentation. Nitrogen free FZ Si exhibited low hardness of 6.49 GPa and elastic modulus of 104 GPa. When doped with 2×10 15 cm −3 nitrogen, FZ Si hardness and elastic modulus increased to 8.2 and 182 GPa, respectively. In the near-surface denuded zone of N-doped CZ Si (N-CZ) the hardness correlates well with the O and N profiles. Distinct high hardness points, found in the O- and N- rich subsurface region, were attributed to precipitates. Nano-scratch tests of N-CZ Si confirmed the existence of hard phases, mostly small precipitates, whose density, estimated to be 2×10 13 cm −3 , is in the range of previously suggested nuclei density in as-grown N-CZ silicon. read less NOT USED (low confidence) E. Aydil, S. Agarwal, M. S. Valipa, S. Sriraman, and D. Maroudas, “Surface processes during growth of hydrogenated amorphous silicon,” MRS Proceedings. 2004. link Times cited: 1 NOT USED (low confidence) P. Brommer, “Entwicklung und Test von Wechselwirkungspotenzialen in Quasikristallen.” 2003. link Times cited: 4 Abstract: Im dekagonalen Aluminium-Nickel-Kobalt-Quasikristall (d-AlNi… read moreAbstract: Im dekagonalen Aluminium-Nickel-Kobalt-Quasikristall (d-AlNiCo) zeigt das Aluminium einige besondere Eigenheiten in seiner Beweglichkeit. Bei 80 % der Schmelztemperatur konnen sich einige Aluminiumatome fast frei durch den Kristall bewegen, wahrend andere unbeweglich in ihrer Ruhelage verharren. Molekulardynamische Simulationen konnen Einblicke in die Dynamik dieses Systems verschaffen. Dazu berechnet man aus den interatomaren Kraften die Beschleunigung, die jedes einzelne Atom erfahrt und bewegt dieses dann entsprechend. Im Idealfall gewinnt man diese Krafte mit Ab-Initio-Methoden aus dem quantenmechanischen Vielteilchenproblem. Leider sind diese Methoden aber auf wenige hundert Atome beschrankt - deutlich zu wenig fur einen Quasikristall. Die Verwendung von effektiven Potenzialen erlaubt die Untersuchung wesentlich groserer Systeme. Dazu benotigt man allerdings geeignete Potenziale - und diese existieren nicht fur komplexe Systeme wie Quasikristalle.
Mit dem so genannten Force Matching oder Kraftanpassung kann man nun effektive Potenziale aus mit Ab-Initio-Methoden bestimmten Kraften gewinnen. Dazu wird ein durch eine beschrankte Anzahl von Parametern festgelegtes Potenzial so angepasst, dass die quantenmechanisch berechneten Krafte bestmoglich reproduziert werden. Diesem Verfahren liegt zu Grunde, dass ein Potenzial, das die interatomaren Krafte richtig wiedergeben kann, auch die richtige Dynamik erzeugt.
Im Rahmen dieser Diplomarbeit wurde mit Force Matching ein EAM-Potenzial fur die dekagonale Phase von AlNiCo generiert und verschiedenen Tests unterzogen. Dabei zeigte sich, dass das so erzeugte Potenzial zwar einige dynamische Eigenschaften wie die Aluminium-Diffusion korrekt wiedergeben kann, in anderen Bereichen durch die Hinzunahme von weiteren Referenzstrukturen weiterer Verbesserung bedarf.
Aluminum mobility in decagonal AlNiCo displays interesting peculiarities. At 80 % of the melting temperature some aluminum atoms can move around the quasicrystal, while others remain firmly locked in place. Molecular dynamics simulations can offer insights into the dynamics of this system. Ideally one would use ab-initio methods to evaluate the many-body quantum mechanical equations, but those methods are limited to a few hundred atoms. On the other hand, the application of effective potentials allows much larger systems. Then the problem is to find suitable potentials, which are not available for complex systems like quasicrystals. Force Matching is a way to derive effective potentials from quantum-mechanical input data, thereby combining the advantages of the two methods. The idea is that a potential that reproduces the forces correctly also yields the correct dynamics. The application of this method to the decagonal AlNiCo quasicrystalline phase is described and test simulations with the derived potentials are presented. read less NOT USED (low confidence) V. Tewary and B. Yang, “Multiscale modeling of mechanical response of quantum nanostructures.” 2003. link Times cited: 2 NOT USED (low confidence) W. Cheong and L. Zhang, “Monocrystalline silicon subjected to multi-asperity sliding: nano-wear mechanisms, subsurface damage and effect of asperity interaction,” International Journal of Materials & Product Technology. 2003. link Times cited: 23 Abstract: Nano-sliding between two surfaces often involves the interac… read moreAbstract: Nano-sliding between two surfaces often involves the interaction of many asperities. With the aid of molecular dynamics analysis, this study uses a three-asperity model to investigate the effects of the relative orientation and position of the asperities on the nano-wear mechanism of silicon. It was found that when the first asperity has created a damaged layer, the material would deform differently under subsequent sliding. A thin amorphous layer always remains and there is also an absence of dislocations when the depth of asperity penetration is small. On the other hand, when the asperities are not traversing a damaged zone, the forces experienced by the asperities are independent of their relative positions. The results suggest that the microstructural changes are localised and the initial sliding affects the subsequent deformation over a damaged region. read less NOT USED (low confidence) R. Wagner and E. Gulari, “Germanium Island Size Distribution by Atomistic Simulation,” MRS Proceedings. 2003. link Times cited: 0 Abstract: Strained epitaxial growth of Ge on Si(001) produces self-ass… read moreAbstract: Strained epitaxial growth of Ge on Si(001) produces self-assembled, nanometer scale islands, or quantum dots. We study this growth by atomistic simulation, computing the energy of island structures to determine when and how islanding occurs. The distribution of island sizes on a surface is determined by the relation of island energy to size. Applying the calculated chemical potential to the Boltzmann-Gibbs distribution, we predict size distributions as functions of coverage and temperature. The peak populations around 80 000 atoms (35 nm wide) compare favorably with experiment. read less NOT USED (low confidence) S. Chitra, A. Jalal, K. Ramachandran, and S. Rajagopal, “PHOTOACOUSTIC MEASUREMENT AND MOLECULAR DYNAMICS SIMULATION FOR THERMAL CONDUCTIVITY OF Al0.3Ga0.7As,” International Journal of Modern Physics C. 2003. link Times cited: 1 Abstract: The thermal conductivity of Al0.3Ga0.7As is studied using ph… read moreAbstract: The thermal conductivity of Al0.3Ga0.7As is studied using photoacoustic technique and molecular dynamics simulation. Tersoff's potential is used for the simulation, for the first time, to this alloy. Thermal conductivity, determined experimentally by photoacoustic technique using our experimental setup, agrees well with the molecular dynamics simulation and literature values. The results are compared with the host GaAs and the role of DX centers in thermal property is discussed. read less NOT USED (low confidence) D. Sorescu, B. Rice, and D. Thompson, “Chapter 6 - Molecular Dynamics Simulations of Energetic Materials,” Theoretical and Computational Chemistry. 2003. link Times cited: 5 NOT USED (low confidence) N. Resta, C. Kohler, and H. Trebin, “Modeling the crystal growth of cubic silicon carbide by molecular dynamics simulations,” MRS Proceedings. 2002. link Times cited: 0 Abstract: The crystal growth of a seed of cubic SiC into the amorphous… read moreAbstract: The crystal growth of a seed of cubic SiC into the amorphous material has been investigated by means of classical molecular dynamics simulations. The crystallization process was studied with a set of supercells containing up to 2000 atoms, initially consisting of a 12 A thick layer of crystalline SiC and a 18 A thick layer of amorphous SiC at high pressure. The dynamic evolution of crystallization was then followed for several nanoseconds with the simulated annealing technique performed at constant pressure and temperature. The atomic interactions were described by the Tersoff potential. We studied the dependence of the growth process on the crystallographic orientation of the crystalline/amorphous interface by considering three different crystal planes, namely the {100}, {110}, and {111} planes. Within the pressure-temperature range considered in our simulations, we observed the crystal growth only for the {110} and the {111} orientations, but not for the {100} ones. The atomistic details of the growth mechanism are described and discussed. read less NOT USED (low confidence) P. Kelires, “Amorphous-Amorphous Phase Transitions in Elemental Group- IV Semiconductors.” 2002. link Times cited: 0 NOT USED (low confidence) T. Inamura, G. Feng, N. Takezawa, and N. Mohri, “Effect of Surface Oxidation on Micromachinability of Monocrystalline Silicon,” CIRP Annals. 2001. link Times cited: 11 NOT USED (low confidence) Y. Gogotsi, V. Kamyshenko, V. Shevchenko, S. Welz, D. Ersoy, and M. McNallan, “Nanostructured Carbon Coatings on Silicon Carbide: Experimental and Theoretical Study.” 2001. link Times cited: 11 NOT USED (low confidence) A. Cullis, D. Norris, T. Walther, M. Migliorato, and M. Hopkinson, “Epitaxial island growth and the Stranski-Krastanow transition,” MRS Proceedings. 2001. link Times cited: 2 Abstract: The way in which the Stranski-Krastanow epitaxial islanding … read moreAbstract: The way in which the Stranski-Krastanow epitaxial islanding transition can be controlled by strain due to elemental segregation within the initially-formed flat 'wetting' layer is examined in detail. Experimentally measured critical 'wetting' layer thicknesses for the In(x)Ga(1-x)As/GaAs system (x = 0.25 - 1) are demonstrated to show good agreement with values calculated using a segregation model. The strain energy associated with the segregated surface layer is determined for the complete range of deposited In concentrations using atomistic simulations. The segregation-mediated driving force for the Stranski-Krastanow transition is considered to be important also for all other epitaxial systems exhibiting the transition. read less NOT USED (low confidence) D. Graves and C. Abrams, “Molecular dynamics simulations of ion-surface interactions with applications to plasma processing,” Advances in Chemical Engineering. 2001. link Times cited: 2 NOT USED (low confidence) G. Benedek, M. Bernasconi, D. Donadio, and L. Colombo, “Covalent Cluster-Assembled Carbon Solids.” 2001. link Times cited: 1 NOT USED (low confidence) D. Maroudas, “Modeling of radical-surface interactions in the plasma-enhanced chemical vapor deposition of silicon thin films,” Advances in Chemical Engineering. 2001. link Times cited: 33 NOT USED (low confidence) S. Munetoh, K. Moriguchi, T. Motooka, and K. Kamei, “Molecular-dynamics studies on solid phase epitaxy of guest-free silicon clathrates,” MRS Proceedings. 2001. link Times cited: 1 NOT USED (low confidence) J. Bording and J. Taftø, “Reconciliation of the microcrystalline and the continuous random network model for amorphous semiconductors,” MRS Proceedings. 2000. link Times cited: 0 Abstract: We show by molecular dynamics simulations, that the radial d… read moreAbstract: We show by molecular dynamics simulations, that the radial distribution function of an amorphous material does not change significantly by introducing a considerable volume fraction of nanocrystals. The nanocrystals, embedded in a continuous random network, ensure a certain degree of medium range order in the amorphous material. Our simulations, which are on germanium, show that microcrystals smaller than 2 nm can comprise at least 20 % of the volume without significantly changing the radial distribution function from that of pure continuous random network. By increasing the size of the crystals, without altering the crystal to amorphous volume ratio, the radial distribution changes. The molecular dynamics simulations show that the nanocrystals are unchanged at low temperature. At higher temperature the mobility and critical size of the grains increase, transforming the sub-critical crystalline grains into the surrounding continuous random network matrix. read less NOT USED (low confidence) N. H. March, “Bond stretching and electronic correlation in relation to mechanical and tribological properties of solids,” International Journal of Quantum Chemistry. 2000. link Times cited: 1 NOT USED (low confidence) X. Yuan and L. Hobbs, “Influence of Interatomic Potentials in MD Investigation of Ordering in a -SiC,” MRS Proceedings. 2000. link Times cited: 4 Abstract: Molecular dynamics (MD) simulations of a -SiC using several … read moreAbstract: Molecular dynamics (MD) simulations of a -SiC using several Tersoff potentials have been performed and their influences on structure ordering were studied. It was found that using different potential cutoffs leads to remarkably different structures. An abrupt cutoff at 2.5 A greatly increases the chemical ordering of a -SiC by disfavoring the formation of Si-Si bonds. In addition, annealing of SiC cascades embedded in β-SiC was simulated, and the final structures were compared. Again, much stronger topological and chemical ordering was observed in the structure modeled with the 2.5 A potential cutoff. read less NOT USED (low confidence) R. Devanathan, F. Gao, and W. J. Weber, “Computer Simulation of Energy Dependence of Primary Damage States in SiC,” MRS Proceedings. 2000. link Times cited: 0 NOT USED (low confidence) J. Perlado, L. Malerba, A. Sánchez-Rubio, and T. D. Rubia, “Analysis of displacement cascades and threshold displacement energies in β-sic,” Journal of Nuclear Materials. 2000. link Times cited: 48 NOT USED (low confidence) M. Ali and A. Törn, “Optimization of Carbon and Silicon Cluster Geometry for Tersoff Potential using Differential Evolution.” 2000. link Times cited: 23 NOT USED (low confidence) D. Srivastava, F. N. Dzegilenko, S. Barnard, S. Saini, M. Menon, and S. Weeratunga, “Carbon-nanotube-based nanotechnology in an integrated modeling and simulation environment.” 2000. link Times cited: 2 NOT USED (low confidence) K. Shintani, H. Sugii, Y. Kikuchi, and M. Kobayashi, “Atomistic Study of Strain Profiles in Semiconductor Quantum Dot Structures,” MRS Proceedings. 2000. link Times cited: 0 NOT USED (low confidence) K. Nordlund and R. Averback, “Collision cascades in metals and semiconductors: defect creation and interface behavior,” Journal of Nuclear Materials. 2000. link Times cited: 30 NOT USED (low confidence) T. Iwasaki and H. Miura, “Analysis of Adhesion Strength of Interfaces Between Thin Films Using Molecular Dynamics Technique,” MRS Proceedings. 1999. link Times cited: 3 NOT USED (low confidence) N. H. March, “LOCALIZATION VIA DENSITY FUNCTIONALS,” Topics in Current Chemistry. 1999. link Times cited: 2 NOT USED (low confidence) N. H. March, “Many-electron theory: Density functional approach generalized to treat spin eigenfunctions and relation to spinless low-order density matrices,” International Journal of Quantum Chemistry. 1999. link Times cited: 2 NOT USED (low confidence) K. Ohno, K. Esfarjani, and Y. Kawazoe, “Empirical Methods and Coarse-Graining.” 1999. link Times cited: 0 NOT USED (low confidence) J. F. Justo, F. B. Mota, and A. Fazziom, “Hydrogenated Amorphous Silicon Nitride: Structural and Electronic Properties,” MRS Proceedings. 1998. link Times cited: 2 Abstract: The authors combined empirical and ab initio methods to stud… read moreAbstract: The authors combined empirical and ab initio methods to study structural and electronic properties of amorphous silicon nitride. For such study, they developed an interatomic potential to describe the interactions between silicon, nitrogen, and hydrogen atoms. Using this potential, the authors performed Monte Carlo simulations in a simulated annealing scheme to study structural properties of amorphous silicon nitride. Then this potential was used to generate relevant structure of a-SiN{sub x}:H{sub y} which were input configurations to ab initio calculations. The authors investigated the electronic and structural role played by hydrogen incorporation in amorphous silicon nitride. read less NOT USED (low confidence) D. Savage, F. Liu, V. Zielasek, and M. Lagally, “Chapter 2 Fundamental Mechanisms of Film Growth,” Semiconductors and Semimetals. 1998. link Times cited: 9 NOT USED (low confidence) K. Matsunaga and H. Matsubara, “Molecular Orbital Calculations on Atomic Structures of Si-Based Covalent Amorphous Ceramics,” MRS Proceedings. 1998. link Times cited: 0 Abstract: We have performed ab-initio Hartree-Fock molecular orbital c… read moreAbstract: We have performed ab-initio Hartree-Fock molecular orbital calculations of local atomic structures and chemical bonding states in Si-N covalent amorphous ceramics. Solute elements such as boron, carbon and oxygen were considered in the Si-N network, and the bonding characteristics around the solute elements were analyzed. When a nitrogen atom is substituted by a carbon atom, it was found that Si-C bonds reinforce the Si-N network due to strong covalency. read less NOT USED (low confidence) F. B. Mota, J. F. Justo, and A. Fazzio, “Structural and electronic properties of silicon nitride materials,” International Journal of Quantum Chemistry. 1998. link Times cited: 20 Abstract: The authors developed an empirical potential for interaction… read moreAbstract: The authors developed an empirical potential for interactions between Si and N to describe silicon nitride systems using the Tersoff functional form. With this model, they explored the structural properties of amorphous silicon nitride through the Monte Carlo simulations and compared them to available experimental data. The empirical model provided a very good description of such properties for a-SiN{sub x} (0 < x < 1.5). Electronic structure of amorphous and point defects in crystalline silicon nitride were then studied using first-principles calculations. For such calculations, the configurations were created by the empirical model, with the relaxed structures used as input for the first-principles calculations. Atomic relaxation was later allowed in the first-principles calculations. read less NOT USED (low confidence) J. Perlado, L. Malerba, and T. D. Rubia, “Molecular Dynamics Simulation of Neutron Damage in β-SIC,” MRS Proceedings. 1998. link Times cited: 6 Abstract: Molecular Dynamics (MD) simulations of neutron damage in β-S… read moreAbstract: Molecular Dynamics (MD) simulations of neutron damage in β-SiC have been performed using a modified version of the Tersoff potential. The Threshold Displacement Energy (TDE) for Si and C atoms at 300 K has been determined along directions [001], [110], [111] and [ 1 1 1 ]. The existence of recombination barriers, which allow the formation of metastable, temperature-sensitive defects even below the threshold, has been observed. Displacement cascades produced by both C- and Si-recoils of energies spanning from 0.5 keV up to, respectively, 5 keV and 8 keV have also been simulated at 300 K and 1300 K. Their analysis, together with the analysis of damage accumulation (∼3.4×10 -3 DPA) at 1300 K, reveals that the two sub-lattices exhibit opposite responses to irradiation: whereas only a little damage is produced on the “ductile” Si sub-lattice, many point-defects accumulate on the much more “fragile” C sub-lattice. A preliminary study of the nature and clustering tendency of these defects is performed. The possibility of disorder-induced amorphization is considered and the preliminary result is that no amorphization takes place at the dose and temperature simulated. read less NOT USED (low confidence) T. Aoki, T. Seki, M. Tanomura, J. Matsuo, Z. Insepov, and I. Yamada, “Molecular Dynamics Simulation of Fullerene Cluster Ion Impact,” MRS Proceedings. 1997. link Times cited: 1 Abstract: In order to interpret the projection range and to reveal the… read moreAbstract: In order to interpret the projection range and to reveal the mechanism of damage formation by cluster ion impact, molecular dynamics simulations of a fullerene carbon cluster (C 60 ) impacting on diamond (001) surfaces were performed. When the kinetic energy of C 60 is as low as 200eV/atom, C 60 implants into the substrate deeper than a monomer ion with the same energy per atom because of the clearing-way effect. The kinetic energy of the cluster disperses isotropically because of the multiple-collision effect, and then a large hemispherical damage region is formed. When the energy of the cluster is as high as 2keV/atom, the cluster dissociates in the substrate, and then cascade damage is formed like in a case of a monomer ion impact. The projection range of incident atoms becomes similar to that of the monomer with the same energy per atom. However, the number of displacements of C 60 is larger than the summation of 60 monomer carbons. The displacement yield of fullerene is 4 to 7 times higher than that of monomer carbon. This result agrees with the measurement of the displacements made on sapphire substrates with C 60 and C 2 irradiation. read less NOT USED (low confidence) F. Liu and M. Lagally, “Chapter 7 Epitaxial growth of Si on Si(001),” The Chemical Physics of Solid Surfaces. 1997. link Times cited: 2 NOT USED (low confidence) W. Windl, J. Kress, A. Voter, J. Menéndez, and O. Sankey, “Influence of The Local Microstructure on The Macroscopic Properties of Si 1-x-y Ge x C y , Alloys,” MRS Proceedings. 1997. link Times cited: 2 Abstract: We performed a theoretical study of the microscopic arrangem… read moreAbstract: We performed a theoretical study of the microscopic arrangement of the C atoms in Si 1–x–y Ge x C y , alloys using the Sankey local-orbital density-functional formalism. Our first-principles calculations show that in the dilute limit, the lattice constant in Si 1–y C y , alloys decreases much more (by about 2/3) with concentration than predicted by Vegard's law. We show thatthis result is consistent with Raman and infrared experiments and with previous empiricalcalculations. As the C concentration increases, the interactions between the C atoms become important: Interstitial C becomes more abundant and increases the lattice constant, and the substitutional C atoms array under appropriate growth conditions. The effect of this ordering on the lattice constant is small, but it can be seen in the Raman spectra of layer-by-layer grown samples. read less NOT USED (low confidence) R. Devanathan, W. J. Weber, and T. D. Rubia, “Atomistic simulation of defect production in β-SiC,” MRS Proceedings. 1997. link Times cited: 1 NOT USED (low confidence) N. H. March, “Forces between atoms and atomic planes in condensed metallic phases and in semiconducting silicon,” International Journal of Quantum Chemistry. 1997. link Times cited: 0 NOT USED (low confidence) R. Rentsch and I. Inasaki, “Investigation of Surface Integrity by Molecular Dynamics Simulation,” CIRP Annals. 1995. link Times cited: 60 NOT USED (low confidence) J. J. C. Barrett, D. Robertson, D. Brenner, and C. T. White, “Simulations of Ozone Detonation Using a Reactive Empirical Bond Order (REBO) Potential for the Oxygen System,” MRS Proceedings. 1995. link Times cited: 1 Abstract: The short length and time scales associated with chemical de… read moreAbstract: The short length and time scales associated with chemical detonations make these processes excellent candidates for study by molecular dynamics (MD) simulation. Potentials used in these simulations must have sufficient flexibility to describe gas-phase properties of isolated reactant and product molecules, high density material generated under shock compression, and allow smooth adjustment of bonding forces during chemical reaction. The REBO formalism has been shown to provide these characteristics and allow the treatment of a sufficient number atoms for sufficiently long times to demonstrate a chemically-sustained shock wave (CSSW). In this paper the authors present a REBO potential describing the oxygen system for use in MD simulation of detonation in an ozone molecular solid. The potential reproduces spectroscopic properties of isolated gas-phase O{sub 2} and O{sub 3}. It also describes an ozone molecular solid with density and speed of sound within physical norms. They observe detonation characteristics that depend on crystallographic orientation in simulations using a three dimensional ozone molecular crystal. read less NOT USED (low confidence) T. D. Rubia, M. Caturla, and M. Tobin, “Molecular dynamics studies of radiation effects in silicon carbide,” MRS Proceedings. 1994. link Times cited: 14 Abstract: We discuss results of molecular dynamics computer simulation… read moreAbstract: We discuss results of molecular dynamics computer simulation studies of 3 keV and 5 keV displacement cascades in {beta}-SIC, and compare them to results of 5 keV cascades in pure silicon. The SiC simulations are performed with the Tersoff potential. For silicon we use the Stillinger-Weber potential. Simulations were carried out for Si recoils in 3 dimensional cubic computational cells With periodic boundary conditions and up to 175,616 atoms. The cascade lifetime in SiC is found to be extremely short. This, combined with the high melting temperature of SiC, precludes direct lattice amorphization during the cascade. Although large disordered regions result, these retain their basic crystalline structure. These results are in contrast with observations in pure silicon where direct-impact amorphization from the cascade is seen to take place. The SiC results also show anisotropy in the number of Si and C recoils as well as in the number of replacements in each sublattice. Details of the damage configurations obtained will be discussed. read less NOT USED (low confidence) H. Rafii-Tabar, H. Kamiyama, Y. Maruyama, K. Ohno, and Y. Kawazoe, “An Application of Classical Molecular Dynamics Simulation and AB Initio Density-Functional Calculation in Surface Physics,” Molecular Simulation. 1994. link Times cited: 8 Abstract: Classical molecular dynamics simulation and ab initio mixed … read moreAbstract: Classical molecular dynamics simulation and ab initio mixed basis Car-Parrinello methods are discussed and applied to the investigation of the results of a recently performed STM-based experiment involving the adsorption of C60 molecules on the dimerized Si surface. We show that these methods are capable of providing the theoretical basis for this experiment and test the validity of the associated conjectures. A mixed-basis all-electron formalism for the Car-Parrinello method is proposed to obtain the detailed understanding of the electronic states and dynamics of surface structure. A band structure calculation using this formalism is performed for the c(4 × 3) structure of C60 adsorbed on Si (100) surface and is compared with the experimental results. read less NOT USED (low confidence) T. Halicioǧlu, “Strain dependence of binding energies for carbon adatoms on the Si(100) surface,” Thin Solid Films. 1994. link Times cited: 0 NOT USED (low confidence) J. Harding, “Computer Modelling of Defects.” 1994. link Times cited: 1 NOT USED (low confidence) C. Matthai, G. J. Moran, and I. Morrison, “Computer simulation of Si and C atoms on SiC surfaces,” MRS Proceedings. 1994. link Times cited: 0 Abstract: The molecular dynamics method employing an empirical potenti… read moreAbstract: The molecular dynamics method employing an empirical potential energy function to describe the Si-C interaction has been used to determine the minimum energy sites for Si and C adatoms on C-terminated SiC (001) substrates. It is found that whereas a single C adatom lies on the carbon dimer bond, this site only becomes energetically favourable for silicon adatoms when they interact to form a dimer pair read less NOT USED (low confidence) A. Nandedkar, “Effect of Stresses in Thin Films on Defect Nucleation,” MRS Proceedings. 1994. link Times cited: 0 NOT USED (low confidence) M. Ross, “HIGH PRESSURE EQUATIONS OF STATE: THEORY AND APPLICATIONS.” 1993. link Times cited: 44 NOT USED (low confidence) H. Rafii-Tabar, Y. Kawazoe, and H. Kamiyama, “Stability of the Fullerenes Thin Film Deposited on the SI(100) Surface,” MRS Proceedings. 1993. link Times cited: 1 NOT USED (low confidence) A. Sawamura, Y. Watanabe, and R. Yamamoto, “An Atomistic Computer Simulation of Crack Extension in Cubic Silicon Carbide,” MRS Proceedings. 1992. link Times cited: 0 Abstract: An atomistic computer simulation of mode I crack extension i… read moreAbstract: An atomistic computer simulation of mode I crack extension in cubic silicon carbide has been performed using a realistic many–body interatomic potential computed by Tersoff. The crack front is parallel to the [1 1 0] direction and the crack plane lies in the (111) plane. The stable crack tip configurations were calculated and the effective stress intensity factor and the effective crack tip position were evaluated in the relaxed atomic configuration by the least-square method. The crack was stable over a wide range of the stress intensity factors from 0. 6K G to 3. 4K G , where K G is the Griffith critical stress intensity factor. At 3.5K G an interatomic bond near the tip across the (001) plane ruptured and the crack advanced. When the crack is stable, the effective K is larger than the given K by nearly 0. 2K G to 0.4K G . Crack tip process was also simulated over a range of temperatures. At 1000K. secondary cracks were nucleated and grew like voids around the main crack, and thus the main crack was blunted. read less NOT USED (low confidence) P. Ashu and C. Matthai, “Molecular dynamics simulation of germanium on silicon (001) substrates,” Applied Surface Science. 1992. link Times cited: 4 NOT USED (low confidence) P. Ashu and C. Matthai, “A molecular dynamics study of the critical thickness of Ge layers on Si substrates,” Applied Surface Science. 1991. link Times cited: 17 NOT USED (low confidence) R. Smith, “Modelling and Simulation of Particle-Surface Interactions.” 1991. link Times cited: 1 NOT USED (low confidence) M. Duesbery and G. Richardson, “The dislocation core in crystalline materials,” Critical Reviews in Solid State and Materials Sciences. 1991. link Times cited: 134 Abstract: The art of forming materials into technologically useful art… read moreAbstract: The art of forming materials into technologically useful artifacts by manipulation of the dislocation substructure dates back at least 8000 years to the Sumerian coppersmiths.1 Physical understanding of the mechanisms involved, on the other hand, began little more than 50 years ago; modem knowledge suggests that even now this understanding is far from complete. read less NOT USED (low confidence) A. Sawamura, Y. Watanabe, and R. Yamamoto, “A COMPUTER SIMULATION OF CRACK EXTENSION IN β-SiC,” Computer Aided Innovation of New Materials. 1991. link Times cited: 0 NOT USED (low confidence) J. Tersoff, “Calculated Properties of Carbon Defects in Silicon,” MRS Proceedings. 1990. link Times cited: 0 NOT USED (high confidence) C. S. Ezquerro, M. Laspalas, J. M. G. Aznar, S. C. Ariza, and A. Chiminelli, “Molecular modelling of graphene nanoribbons on the effect of porosity and oxidation on the mechanical and thermal properties,” Journal of Materials Science. 2023. link Times cited: 1 NOT USED (high confidence) C. Liu, S. To, X. Sheng, R. Wang, and J. Xu, “Atomic simulation of crystal orientation and workpiece composition effect on nano-scratching of SiGe alloy,” Discover Nano. 2023. link Times cited: 0 NOT USED (high confidence) J. Liu, J. Byggmästar, Z. Fan, P. Qian, and Y. Su, “Large-scale machine-learning molecular dynamics simulation of primary radiation damage in tungsten,” Physical Review B. 2023. link Times cited: 4 Abstract: Simulating collision cascades and radiation damage poses a l… read moreAbstract: Simulating collision cascades and radiation damage poses a long-standing challenge for existing interatomic potentials, both in terms of accuracy and efficiency. Machine-learning based interatomic potentials have shown sufficiently high accuracy for radiation damage simulations, but most existing ones are still not efficient enough to model high-energy collision cascades with sufficiently large space and time scales. To this end, we here extend the highly efficient neuroevolution potential (NEP) framework by combining it with the Ziegler-Biersack-Littmark (ZBL) screened nuclear repulsion potential, obtaining a NEP-ZBL framework. We train a NEP-ZBL model for tungsten and demonstrate its accuracy in terms of the elastic properties, melting point, and various energetics of defects that are relevant for radiation damage. We then perform large-scale molecular dynamics simulations with the NEP-ZBL model with up to 8.1 million atoms and 240 ps (using a single 40-GB A100 GPU) to study the difference of primary radiation damage in both bulk and thin-foil tungsten. While our findings for bulk tungsten are consistent with existing results simulated by embedded atom method (EAM) models, the radiation damage differs significantly in foils and shows that larger and more vacancy clusters as well as smaller and fewer interstitial clusters are produced due to the presence of a free surface. read less NOT USED (high confidence) S. Eskandari, J. Koltai, I. László, M. Vaezi, and J. Kürti, “Formation of nanoribbons by carbon atoms confined in a single-walled carbon nanotube-A molecular dynamics study.,” The Journal of chemical physics. 2023. link Times cited: 0 Abstract: Carbon nanotubes can serve as one-dimensional nanoreactors f… read moreAbstract: Carbon nanotubes can serve as one-dimensional nanoreactors for the in-tube synthesis of various nanostructures. Experimental observations have shown that chains, inner tubes, or nanoribbons can grow by the thermal decomposition of organic/organometallic molecules encapsulated in carbon nanotubes. The result of the process depends on the temperature, the diameter of the nanotube, and the type and amount of material introduced inside the tube. Nanoribbons are particularly promising materials for nanoelectronics. Motivated by recent experimental results observing the formation of carbon nanoribbons inside carbon nanotubes, molecular dynamics calculations were performed with the open source LAMMPS code to investigate the reactions between carbon atoms confined within a single-walled carbon nanotube. Our results show that the interatomic potentials behave differently in quasi-one-dimensional simulations of nanotube-confined space than in three-dimensional simulations. In particular, the Tersoff potential performs better than the widely used Reactive Force Field potential in describing the formation of carbon nanoribbons inside nanotubes. We also found a temperature window where the nanoribbons were formed with the fewest defects, i.e., with the largest flatness and the most hexagons, which is in agreement with the experimental temperature range. read less NOT USED (high confidence) B. Haas et al., “Atomic-Resolution Mapping of Localized Phonon Modes at Grain Boundaries.,” Nano letters. 2023. link Times cited: 3 Abstract: Phonon scattering at grain boundaries (GBs) is significant i… read moreAbstract: Phonon scattering at grain boundaries (GBs) is significant in controlling the nanoscale device thermal conductivity. However, GBs could also act as waveguides for selected modes. To measure localized GB phonon modes, milli-electron volt (meV) energy resolution is needed with subnanometer spatial resolution. Using monochromated electron energy loss spectroscopy (EELS) in the scanning transmission electron microscope (STEM) we have mapped the 60 meV optic mode across GBs in silicon at atomic resolution and compared it to calculated phonon densities of states (DOS). The intensity is strongly reduced at GBs characterized by the presence of 5- and 7-fold rings where bond angles differ from the bulk. The excellent agreement between theory and experiment strongly supports the existence of localized phonon modes and thus of GBs acting as waveguides. read less NOT USED (high confidence) J.-C. Griesser, L. Frérot, J. A. Oldenstaedt, M. Müser, and L. Pastewka, “Analytic elastic coefficients in molecular calculations: Finite strain, nonaffine displacements, and many-body interatomic potentials,” Physical Review Materials. 2023. link Times cited: 1 Abstract: Elastic constants are among the most fundamental and importa… read moreAbstract: Elastic constants are among the most fundamental and important properties of solid materials, which is why they are routinely characterized in both experiments and simulations. While conceptually simple, the treatment of elastic constants is complicated by two factors not yet having been concurrently discussed: finite-strain and non-affine, internal displacements. Here, we revisit the theory behind zero-temperature, finite-strain elastic constants and extend it to explicitly consider non-affine displacements. We further present analytical expressions for second-order derivatives of the potential energy for two-body and generic many-body interatomic potentials, such as cluster and empirical bond-order potentials. Specifically, we revisit the elastic constants of silicon, silicon carbide and silicon dioxide under hydrostatic compression and dilatation. Based on existing and new results, we outline the effect of multiaxial stress states as opposed to volumetric deformation on the limits of stability of their crystalline lattices. read less NOT USED (high confidence) A. Rau, S. Jubin, J. R. Vella, and I. Kaganovich, “Simulations of graphite boronization: A molecular dynamics study of amorphization resulting from bombardment,” Frontiers of Physics. 2022. link Times cited: 0 Abstract: The molecular dynamics code LAMMPS was used to simulate the … read moreAbstract: The molecular dynamics code LAMMPS was used to simulate the bombardment of a graphite structure by atomic boron with impact energies ranging from 50–250 eV. The transient structural evolution, penetration depth, and amorphous layer thickness were analyzed. Simulations show that larger impact energies lead to a greater volume of amorphization and penetration of boron, but that the growth rate of the amorphous layer decreases with increasing fluence. Furthermore, the change in surface chemistry of the amorphized structures was studied using the ReaxFF formalism, which found that the amorphization process introduces dangling bonds thus increasing reactivity in the amorphous region. read less NOT USED (high confidence) H. Dong, C. Cao, P. Ying, Z. Fan, P. Qian, and Y. Su, “Anisotropic and high thermal conductivity in monolayer quasi-hexagonal fullerene: A comparative study against bulk phase fullerene,” International Journal of Heat and Mass Transfer. 2022. link Times cited: 14 NOT USED (high confidence) H. Zhang and J. Guilleminot, “A Riemannian stochastic representation for quantifying model uncertainties in molecular dynamics simulations,” Computer Methods in Applied Mechanics and Engineering. 2022. link Times cited: 2 NOT USED (high confidence) Y. Wang, Z. Fan, P. Qian, M. A. Caro, and T. Ala‐Nissila, “Quantum-corrected thickness-dependent thermal conductivity in amorphous silicon predicted by machine learning molecular dynamics simulations,” Physical Review B. 2022. link Times cited: 11 Abstract: Amorphous silicon (a-Si) is an important thermal-management … read moreAbstract: Amorphous silicon (a-Si) is an important thermal-management material and also serves as an ideal playground for studying heat transport in strongly disordered materials. Theoretical prediction of the thermal conductivity of a-Si in a wide range of temperatures and sample sizes is still a challenge. Herein we present a systematic investigation of the thermal transport properties of a-Si by employing large-scale molecular dynamics (MD) simulations with an accurate and efficient machine-learned neuroevolution potential (NEP) trained against abundant reference data calculated at the quantum-mechanical density-functional-theory level. The high efficiency of NEP allows us to study the effects of finite size and quenching rate in the formation of a-Si in great detail. We find that it requires a simulation cell up to $64,000$ atoms (a cubic cell with a linear size of 11 nm) and a quenching rate down to $10^{11}$ K s$^{-1}$ for fully convergent thermal conductivity. Structural properties, including short- and medium-range order as characterized by the pair correlation function, angular distribution function, coordination number, ring statistics and structure factor are studied to demonstrate the accuracy of NEP and to further evaluate the role of quenching rate. Using both the heterogeneous and the homogeneous nonequilibrium MD methods and the related spectral decomposition techniques, we calculate the temperature- and thickness-dependent thermal conductivity values of a-Si and show that they agree well with available experimental results from 10 K to room temperature. Our results also highlight the importance of quantum effects in the calculated thermal conductivity and support the quantum correction method based on the spectral thermal conductivity. read less NOT USED (high confidence) A. Osinsky and N. Brilliantov, “Scaling laws in fragmentation kinetics,” Physica A: Statistical Mechanics and its Applications. 2022. link Times cited: 0 NOT USED (high confidence) Z. Fan et al., “GPUMD: A package for constructing accurate machine-learned potentials and performing highly efficient atomistic simulations.,” The Journal of chemical physics. 2022. link Times cited: 46 Abstract: We present our latest advancements of machine-learned potent… read moreAbstract: We present our latest advancements of machine-learned potentials (MLPs) based on the neuroevolution potential (NEP) framework introduced in Fan et al. [Phys. Rev. B 104, 104309 (2021)] and their implementation in the open-source package gpumd. We increase the accuracy of NEP models both by improving the radial functions in the atomic-environment descriptor using a linear combination of Chebyshev basis functions and by extending the angular descriptor with some four-body and five-body contributions as in the atomic cluster expansion approach. We also detail our efficient implementation of the NEP approach in graphics processing units as well as our workflow for the construction of NEP models and demonstrate their application in large-scale atomistic simulations. By comparing to state-of-the-art MLPs, we show that the NEP approach not only achieves above-average accuracy but also is far more computationally efficient. These results demonstrate that the gpumd package is a promising tool for solving challenging problems requiring highly accurate, large-scale atomistic simulations. To enable the construction of MLPs using a minimal training set, we propose an active-learning scheme based on the latent space of a pre-trained NEP model. Finally, we introduce three separate Python packages, viz., gpyumd, calorine, and pynep, that enable the integration of gpumd into Python workflows. read less NOT USED (high confidence) H. R. Heris, M. Kateb, S. Erlingsson, and A. Manolescu, “Effects of transverse geometry on the thermal conductivity of Si and Ge nanowires,” Surfaces and Interfaces. 2022. link Times cited: 5 NOT USED (high confidence) A. Mittelstädt, A. Schliwa, and P. Klenovský, “Modeling electronic and optical properties of III–V quantum dots—selected recent developments,” Light, Science & Applications. 2022. link Times cited: 16 NOT USED (high confidence) T.-Y. Liang et al., “Abnormally High Thermal Conductivity in Fivefold Twinned Diamond Nanowires,” Materials Today Physics. 2021. link Times cited: 9 NOT USED (high confidence) J. M. Ortiz-Roldán, F. Montero-Chacón, E. Garcia-Perez, S. Calero, A. R. Ruiz-Salvador, and S. Hamad, “Thermostructural Characterization of Silicon Carbide Nanocomposite Materials via Molecular Dynamics Simulations,” Advanced Composite Materials. 2021. link Times cited: 1 Abstract: In this paper, we investigate the thermostructural propertie… read moreAbstract: In this paper, we investigate the thermostructural properties of a type of silicon-based nanomaterials, which we refer to as SiC@Si nanocomposites, formed by SiC crystalline nanoparticles (with the cubic phase), embedded within an amorphous Si matrix. We have followed an in silico approach to characterize the mechanical and thermal behaviour of these materials, by calculating the elastic constants, uniaxial stress-strain curves, coefficients of thermal expansion, and specific heats, at different temperatures, using interatomic potential calculations. The results obtained from our simulations suggest that this type of material presents enhanced thermal resistance features, making it suitable to be used in devices subjected to big temperature changes, such as heat sinks in micro and nanoelectronics, solar energy harvesters at high temperatures, power electronics, or in other applications in which good thermomechanical properties are required. read less NOT USED (high confidence) “Atomic force microscopy calibration of standing surface acoustic wave amplitudes.” 2021. link Times cited: 0 Abstract: Atomic force microscopy is an important tool for characteriz… read moreAbstract: Atomic force microscopy is an important tool for characterizing surface acoustic waves, in particular for high frequencies, where the wavelength is too short to be resolved by laser interferometry. A caveat is, that the cantilever deflection is not equal to the amplitude of the surface acoustic wave. We show, that the energy transfer from the moving surface to the cantilever instead leads to a deflection exceeding the surface modulation. We present a method for an accurate calibration of surface acoustic wave amplitudes based on comparing force-curve measurements with the equation of motion of a driven cantilever. We demonstrate our method for a standing surface acoustic wave on a GaAs crystal confined in a focusing cavity with a resonance frequency near 3 GHz. read less NOT USED (high confidence) Z. Luo, S. A. Burrows, X. Fan, S. Smoukov, and E. Boek, “Virtual voids method to generate low-density microporous carbon structures using quenched molecular dynamics simulation,” Carbon. 2021. link Times cited: 1 NOT USED (high confidence) A. Osinsky and N. Brilliantov, “Collision fragmentation of aggregates. The role of the interaction potential between comprising particles.” 2021. link Times cited: 3 NOT USED (high confidence) Y. Tanuma, T. Maekawa, and C. Ewels, “Methodological Investigation for Hydrogen Addition to Small Cage Carbon Fullerenes,” Crystals. 2021. link Times cited: 2 Abstract: Hydrogenated small fullerenes (Cn, n<60) are of interest as … read moreAbstract: Hydrogenated small fullerenes (Cn, n<60) are of interest as potential astrochemical species, and as intermediates in hydrogen catalysed fullerene growth. However computational identification of key stable species is difficult due to the vast combinatorial space of structures. In this study we explore routes to predict stable hydrogenated small fullerenes. We show that neither local fullerene geometry nor local electronic structure analysis are able to correctly predict subsequent low energy hydrogenation sites, and indeed sequential stable addition searches also sometimes fail to identify most stable hydrogenated fullerene isomers. Of the empirical and semi-empirical methods tested, GFN2-xTB consistently gives highly accurate energy correlation (r>0.99) to full DFT-LDA calculations at a fraction of the computational cost. This allows identification of the most stable hydrogenated fullerenes up to 4H for four fullerenes, namely two isomers of C28 and C40, via “brute force” systematic testing of all symmetry inequivalent combinations. The approach shows promise for wider systematic studies of smaller hydrogenated fullerenes. read less NOT USED (high confidence) J. Wu, L. Bai, J. Huang, L. Ma, J. Liu, and S. Liu, “Accurate force field of two-dimensional ferroelectrics from deep learning,” Physical Review B. 2021. link Times cited: 14 Abstract: The discovery of two-dimensional (2D) ferroelectrics with sw… read moreAbstract: The discovery of two-dimensional (2D) ferroelectrics with switchable out-of-plane polarization such as monolayer α-In2Se3 offers a new avenue for ultrathin high-density ferroelectric-based nanoelectronics such as ferroelectric field effect transistors and memristors. The functionality of ferroelectrics depends critically on the dynamics of polarization switching in response to an external electric/stress field. Unlike the switching dynamics in bulk ferroelectrics that have been extensively studied, the mechanisms and dynamics of polarization switching in 2D remain largely unexplored. Molecular dynamics (MD) using classical force fields is a reliable and efficient method for largescale simulations of dynamical processes with atomic resolution. Here we developed a deep neural network-based force field of monolayer In2Se3 using a concurrent learning procedure that efficiently updates the first-principles-based training database. The model potential has accuracy comparable with density functional theory (DFT), capable of predicting a range of thermodynamic properties of In2Se3 polymorphs and lattice dynamics of ferroelectric In2Se3. Pertinent to the switching dynamics, the model potential also reproduces the DFT kinetic pathways of polarization reversal and 180◦ domain wall motions. Moreover, isobaric-isothermal ensemble MD simulations predict a temperature-driven α → β phase transition at the single-layer limit, as revealed by both local atomic displacement and Steinhardt’s bond orientational order parameter Q4. Our work paves the way for further research on the dynamics of ferroelectric α-In2Se3 and related systems. ∗ These two authors contributed equally † liushi@westlake.edu.cn read less NOT USED (high confidence) E. M. Y. Lee, A. Yu, J. D. de Pablo, and G. Galli, “Stability and molecular pathways to the formation of spin defects in silicon carbide,” Nature Communications. 2021. link Times cited: 9 NOT USED (high confidence) M. Wen, Y. Afshar, R. Elliott, and E. Tadmor, “KLIFF: A framework to develop physics-based and machine learning interatomic potentials,” Comput. Phys. Commun. 2021. link Times cited: 12 NOT USED (high confidence) Z. Fan et al., “Neuroevolution machine learning potentials: Combining high accuracy and low cost in atomistic simulations and application to heat transport,” Physical Review B. 2021. link Times cited: 42 Abstract: We develop a neuroevolution-potential (NEP) framework for ge… read moreAbstract: We develop a neuroevolution-potential (NEP) framework for generating neural network based machine-learning potentials. They are trained using an evolutionary strategy for performing large-scale molecular dynamics (MD) simulations. A descriptor of the atomic environment is constructed based on Chebyshev and Legendre polynomials. The method is implemented in graphic processing units within the open-source GPUMD package, which can attain a computational speed over $10^7$ atom-step per second using one Nvidia Tesla V100. Furthermore, per-atom heat current is available in NEP, which paves the way for efficient and accurate MD simulations of heat transport in materials with strong phonon anharmonicity or spatial disorder, which usually cannot be accurately treated either with traditional empirical potentials or with perturbative methods. read less NOT USED (high confidence) F. M. Bellussi, C. S. Ezquerro, M. Laspalas, and A. Chiminelli, “Effects of Graphene Oxidation on Interaction Energy and Interfacial Thermal Conductivity of Polymer Nanocomposite: A Molecular Dynamics Approach,” Nanomaterials. 2021. link Times cited: 12 Abstract: Interfacial characteristics of polymer nanocomposites repres… read moreAbstract: Interfacial characteristics of polymer nanocomposites represent a crucial aspect to understand their global properties and to evaluate the interaction between nanofillers and matrix. In this work we used a molecular dynamics (MD) approach to characterize the interfacial region at the atomistic scale of graphene-based polymer nanocomposites. Three different polymer matrixes were considered, polylactic acid (PLA), polypropylene (PP) and epoxy resin (EPO), which were reinforced with three types of graphene fillers: pristine graphene (G), graphene oxide (GO) and reduced graphene oxide (rGO). In particular, the compatibility of the nanofillers in polymer matrixes were evaluated in terms of the interaction energy, while the interfacial thermal resistance (Kapitza resistance) between matrices and fillers was calculated with a nonequilibrium molecular dynamics (NEMD) method. Results showed that the oxidation degree plays an important role on the studied properties of the interfacial region. In particular, it was observed that the Kapitza resistance is decreased in the oxidized graphene (GO and rGO), while interaction energy depended on the polarity of the polymer matrix molecules and the contribution of the Coulombic component. read less NOT USED (high confidence) S. Takamoto et al., “Towards universal neural network potential for material discovery applicable to arbitrary combination of 45 elements,” Nature Communications. 2021. link Times cited: 60 NOT USED (high confidence) Z. Xie, W. Dong, J. Liu, I. Peng, Y. Ma, and D. Li, “MD-HM: memoization-based molecular dynamics simulations on big memory system,” Proceedings of the ACM International Conference on Supercomputing. 2021. link Times cited: 17 Abstract: Molecular dynamics (MD) simulation is a fundamental method f… read moreAbstract: Molecular dynamics (MD) simulation is a fundamental method for modeling ensembles of particles. In this paper, we introduce a new method to improve the performance of MD by leveraging the emerging TB-scale big memory system. In particular, we trade memory capacity for computation capability to improve MD performance by the lookup table-based memoization technique. The traditional memoization technique for the MD simulation uses relatively small DRAM, bases on a suboptimal data structure, and replaces pair-wise computation, which leads to limited performance benefit in the big memory system. We introduce MD-HM, a memoization-based MD simulation framework customized for the big memory system. MD-HM partitions the simulation field into subgrids, and replaces computation in each subgrid as a whole based on a lightweight pattern-match algorithm to recognize computation in the subgrid. MD-HM uses a new two-phase LSM-tree to optimize read/write performance. Evaluating with nine MD simulations, we show that MD-HM outperforms the state-of-the-art LAMMPS simulation framework with an average speedup of 7.6x based on the Intel Optane-based big memory system. read less NOT USED (high confidence) W. Wan, C. Tang, A. Qiu, and Y. Xiang, “The Size Effects of Point Defect on the Mechanical Properties of Monocrystalline Silicon: A Molecular Dynamics Study,” Materials. 2021. link Times cited: 7 Abstract: The molecular dynamics method was used to simulate the fract… read moreAbstract: The molecular dynamics method was used to simulate the fracture process of monocrystalline silicon with different sizes of point defect under a constant strain rate. The mechanism of the defect size on the mechanical properties of monocrystalline silicon was also investigated. The results suggested that the point defect significantly reduces the yield strength of monocrystalline silicon. The relationships between the yield strength variation and the size of point defect fitted an exponential function. By statistically analyzing the internal stress in monocrystalline silicon, it was found that the stress concentration induced by the point defect led to the decrease in the yield strength. A comparison between the theoretical strength given by the four theories of strength and actual strength proved that the Mises theory was the best theory of strength to describe the yield strength of monocrystalline silicon. The dynamic evolution process of Mises stress and dislocation showed that the fracture was caused by the concentration effect of Mises stress and dislocation slip. Finally, the fractured microstructures were similar to a kind of two-dimensional grid which distributed along the cleavage planes while visualizing the specimens. The results of this article provide a reference for evaluating the size effects of point defects on the mechanical properties of monocrystalline silicon. read less NOT USED (high confidence) J. Zhang, S. Srinivasan, S. Sankaranarayanan, and C. Lilley, “Evolutionary inverse design of defects at graphene 2D lateral interfaces,” Journal of Applied Physics. 2021. link Times cited: 2 Abstract: Grain boundaries (GBs) in two-dimensional (2D) materials oft… read moreAbstract: Grain boundaries (GBs) in two-dimensional (2D) materials often have a profound impact on various material properties from mechanical to optical to electronic, yet predicting all possible GB formations is a challenge. Here, we introduce a workflow based on an evolutionary algorithm for exploring possible GBs formed at a lateral 2D interface. In a departure from conventional genetic algorithm based structure optimization methods, we perform genetic operations in the near interface region that allow us to be computationally efficient. We benchmark our method using graphene, which is a well-studied 2D material with a wide range of point defects. An empirical potential was used as the surrogate of the evolutionary search. More than 11.5 × 106 structures in total were evaluated for 128 GB orientations, and for each orientation, the ten best structures are recorded. A subset of low energy GBs predicted by empirical potential based search was relaxed by first-principles calculations and used to validate the energetic rank order. With the validated formation energy, we rank-ordered the best 128 GB structures and performed a detailed statistical analysis of primitive rings to find the correlation between the ring distribution and the formation energy. We found that for low energy GBs (below 0.5 eV / A), Stone–Wales defects will dominate, while structures with a higher energy ( 0.5– 1.1 eV / A) show an increasing population of heptagons and nine-membered rings to form seven-nine defect pairs. For structures with energy higher than 1.1 eV / A, the percentage of octagons and nine-membered rings increases, which indicates that these two types of rings are not energetically favorable. Our proposed methodology is broadly applicable to explore defective low dimensional materials and represents a powerful tool that enables a systematic search of GBs of lateral interfaces for 2D materials. read less NOT USED (high confidence) Q. Duan et al., “Molecular Dynamics Simulation for the Effect of Fluorinated Graphene Oxide Layer Spacing on the Thermal and Mechanical Properties of Fluorinated Epoxy Resin,” Nanomaterials. 2021. link Times cited: 6 Abstract: Traditional epoxy resin (EP) materials have difficulty to me… read moreAbstract: Traditional epoxy resin (EP) materials have difficulty to meet the performance requirements in the increasingly complex operating environment of the electrical and electronic industry. Therefore, it is necessary to study the design and development of new epoxy composites. At present, fluorinated epoxy resin (F-EP) is widely used, but its thermal and mechanical properties cannot meet the demand. In this paper, fluorinated epoxy resin was modified by ordered filling of fluorinated graphene oxide (FGO). The effect of FGO interlayer spacing on the thermal and mechanical properties of the composite was studied by molecular dynamics (MD) simulation. It is found that FGO with ordered filling can significantly improve the thermal and mechanical properties of F-EP, and the modification effect is better than that of FGO with disordered filling. When the interlayer spacing of FGO is about 9 Å, the elastic modulus, glass transition temperature, thermal expansion coefficient, and thermal conductivity of FGO are improved with best effect. Furthermore, we calculated the micro parameters of different systems, and analyzed the influencing mechanism of ordered filling and FGO layer spacing on the properties of F-EP. It is considered that FGO can bind the F-EP molecules on both sides of the nanosheets, reducing the movement ability of the molecular segments of the materials, so as to achieve the enhancement effect. The results can provide new ideas for the development of high-performance epoxy nanocomposites. read less NOT USED (high confidence) H. S. Jahromi, F. Mehdipour, and G. Firoozi, “Fracture Analysis of Vacancy Defected Nitrogen Doped Graphene Sheets Via MD Simulations.” 2021. link Times cited: 4 Abstract: The novel hexagonal monolayer sheet of carbon atoms, graphen… read moreAbstract: The novel hexagonal monolayer sheet of carbon atoms, graphene, has attracted great attention due to their exceptional electrical and mechanical properties. Their phenomenally high strength and elastic strain, nevertheless, can be altered by structural defects due to stress concentration. In this paper, the fracture behaviour of graphene sheets and nitrogen doped graphene sheets with vacancies were investigated using molecular dynamics (MD) simulations at the different temperatures of 300K, 500K, and 900K. The results reveal a significant strength loss caused by both the defects and vacancies and doped nitrogen in graphene. The deformation process of graphene at various strain rate levels, with regard to the failure behaviour, is discussed. The validity of the proposed MD simulations is verified by comparing the simulation results with the available predictions from the quantized fracture mechanics. read less NOT USED (high confidence) C. Liu et al., “Molecular Dynamics Simulation on Cutting Mechanism in the Hybrid Machining Process of Single-Crystal Silicon,” Nanoscale Research Letters. 2021. link Times cited: 14 NOT USED (high confidence) D. Chen and L. Shao, “Using irradiation-induced defects as pinning sites to minimize self-alignment in twisted bilayer graphene,” Applied Physics Letters. 2021. link Times cited: 4 Abstract: Preparing bi-layer graphene under a magic twisting angle of … read moreAbstract: Preparing bi-layer graphene under a magic twisting angle of ∼1.1° has been challenging due to its strong tendency for self-alignment. We propose a method to pin graphene layers and minimize their self-rotation when positioned close to each other. The feasibility is demonstrated by the present study using molecular dynamics simulations. C60 clusters are used to bombard two individual graphene layers, creating damage on both layers. When two irradiated layers are moving closer to each other, defects from irradiation damaged zones can interact with each other, hence acting as pinning sites to immobilize graphene and minimize rotation or gliding. Dangling bonds from defective regions of each plane induce the formation of sp bonds. Upon sliding, the bond is strong enough to induce the formation of one-dimensional carbon single chain, acting as a thread to constrain the relative movements. read less NOT USED (high confidence) L. Shi et al., “Molecular dynamics simulation of phonon thermal transport in nanotwinned diamond with a new optimized Tersoff potential.,” Physical chemistry chemical physics : PCCP. 2021. link Times cited: 8 Abstract: The inaccuracy of the most widely used potentials in calcula… read moreAbstract: The inaccuracy of the most widely used potentials in calculating the phonon transport of sp3 carbon materials hinders the use of molecular dynamics simulations for revealing the underlying mechanism of phonon transport in diamond and related materials. Here, we introduce an optimized Tersoff potential by optimizing the parameters to fit the experimentally determined phonon dispersion in diamond along the high-symmetry directions. Molecular dynamics simulations are performed using this new potential to investigate the phonon thermal transport in flawless and nanotwinned diamond. The simulation results show that while the phonon lifetimes of nanotwinned diamond are slightly lower than those of the flawless one, the phonon group velocities of nanotwinned diamond are obviously lower than those of diamond. The present results indicate that the twin boundaries in diamond are ineffective in scattering the phonons and the lower thermal conductivity of the nanotwinned diamond mainly originates from the lower group velocities due to its reduced structural rigidity. read less NOT USED (high confidence) J. Martínez-González, N. J. English, and A. Gowen, “Molecular simulation of water adsorption on hydrophilic and hydrophobic surfaces of silicon: IR-spectral explorations,” Molecular Simulation. 2021. link Times cited: 2 Abstract: ABSTRACT Molecular-dynamics simulations have been performed … read moreAbstract: ABSTRACT Molecular-dynamics simulations have been performed for full liquid water adsorbed onto two planar silicon surfaces, with varying hydrogen- and hydroxyl-termination (mimicking different extents of hydrophobicity and hydrophophilicity). It was found that there was water-density ‘ordering’ perpendicular to both surfaces – heavily dependent on the degree of hydrophobicity. The position and the width of the three solvation layers closest to the different surfaces depends, again, on the hydrophobicity of the surface. IR spectra of the first monolayer of adsorbed water indicate similarities to more confined-water dynamical behaviour, but without becoming ice-like. Moving away from the surface, the water behaviour converges on that of liquid water, albeit with some intermediate characteristics; this was seen for both hydro-phobic and –philic surfaces. read less NOT USED (high confidence) Z. Yin, P. Zhu, and B. Li, “Study of Nanoscale Wear of SiC/Al Nanocomposites Using Molecular Dynamics Simulations,” Tribology Letters. 2021. link Times cited: 29 NOT USED (high confidence) H. Nguyen and D. T. N. Tranh, “Evolution of the Graphene Layer in Hybrid Graphene/Silicon Carbide Heterostructures upon Heating,” The European Physical Journal D. 2021. link Times cited: 0 NOT USED (high confidence) J. Wu et al., “MD simulation study on defect evolution and doping efficiency of p-type doping of 3C-SiC by Al ion implantation with subsequent annealing,” Journal of Materials Chemistry C. 2021. link Times cited: 16 Abstract: We use molecular dynamics (MD) simulation with numerical cha… read moreAbstract: We use molecular dynamics (MD) simulation with numerical characterisation and statistical analysis to study the mechanisms of damage evolution and p-type doping efficiency by aluminum (Al) ion implantation into 3C silicon carbide (SiC) with subsequent annealing. By incorporating the electronic stopping power for implantation, a more accurate description of the atomic-scale mechanisms of damage evolution and distribution in SiC can be obtained. The simulation results show a novel observation that the recrystallization process occurs in the region below the subsurface layer, and develops from amorphous–crystalline interface to the damage center region, which is a new insight into previously published studies. During surface recrystallization, significant compressive stress concentration occurs, and more structural phase transition atoms and dislocations formed at the damage-rich-crystalline interface. Another point of interest is that for low-dose implantation, more implantation-induced defects hamper the doping efficiency. Correspondingly, the correlation between lattice damage and doping efficiency becomes weaker as the implant dose increases under the same annealing conditions. Our simulation also predicts that annealing after high temperature (HT) implantation is more likely to lead to the formation of carbon vacancies (VC). read less NOT USED (high confidence) Y. Fan, W. Wang, Z. Hao, and H. Yuan, “Effect of Workpiece Atom Diffusion Into CBN Tool on Its Mechanical Properties in Cutting Ni–Fe–Cr Alloy Based on Molecular Dynamics Simulation,” International Journal of Precision Engineering and Manufacturing. 2021. link Times cited: 2 NOT USED (high confidence) Z. Hao, X. Han, Y. Fan, and Z. Lou, “Microscopic Study on the Mechanism of Tool Bond Wear in Cutting Ni–Fe-Cr-Co–Cu Series Nickel-Base Superalloy,” International Journal of Precision Engineering and Manufacturing. 2021. link Times cited: 2 NOT USED (high confidence) Y. Chen, J. Xiong, and G. Zhang, “Generation mechanism of irregular microstructures on the machined surface in single-point diamond turning,” The International Journal of Advanced Manufacturing Technology. 2021. link Times cited: 6 NOT USED (high confidence) J. Keith et al., “Combining Machine Learning and Computational Chemistry for Predictive Insights Into Chemical Systems,” Chemical Reviews. 2021. link Times cited: 224 Abstract: Machine learning models are poised to make a transformative … read moreAbstract: Machine learning models are poised to make a transformative impact on chemical sciences by dramatically accelerating computational algorithms and amplifying insights available from computational chemistry methods. However, achieving this requires a confluence and coaction of expertise in computer science and physical sciences. This Review is written for new and experienced researchers working at the intersection of both fields. We first provide concise tutorials of computational chemistry and machine learning methods, showing how insights involving both can be achieved. We follow with a critical review of noteworthy applications that demonstrate how computational chemistry and machine learning can be used together to provide insightful (and useful) predictions in molecular and materials modeling, retrosyntheses, catalysis, and drug design. read less NOT USED (high confidence) Y. Mishin, “Machine-Learning Interatomic Potentials for Materials Science,” Electrical Engineering eJournal. 2021. link Times cited: 103 NOT USED (high confidence) R.-S. Zhang, J.-D. He, B. Wang, and J.-W. Jiang, “Physical description of the monoclinic phase of zirconia based on the bond-order characteristic of the Tersoff potential,” Frontiers of Physics. 2021. link Times cited: 1 NOT USED (high confidence) T. Yibibulla, Y. Jiang, S. Wang, and H. Huang, “Size- and temperature-dependent Young’s modulus of SiC nanowires determined by a laser-Doppler vibration measurement,” Applied Physics Letters. 2021. link Times cited: 6 Abstract: Young's modulus of Fe-catalyzed silicon carbide (SiC) n… read moreAbstract: Young's modulus of Fe-catalyzed silicon carbide (SiC) nanowires was measured in the temperature range of 300–575 K by the use of a laser Doppler vibrometer. The nanowires have a face-centered cubic structure grown along the [111] direction and exhibit different cross-sectional geometries, including circle, rectangle, hexagon, ellipse, trapezoid, and triangle. When the effective diameters of the nanowires decrease from 200 to 55 nm, their room-temperature Young's modulus decreases from ∼550 GPa (the bulk value) to ∼460 GPa, i.e., a reduction of ∼16%, and their temperature coefficient of Young's modulus varies from − 47.4 ± 1.7 ppm/K (the bulk value) to − 78.1 ± 5.9 ppm/K, i.e., a change of ∼65%. The size and temperature dependency of the modulus would greatly benefit the design and fabrication of high-temperature mechanical sensors based on SiC nanostructures. read less NOT USED (high confidence) Y.-S. Lin, G. P. P. Pun, and Y. Mishin, “Development of a physically-informed neural network interatomic potential for tantalum,” Computational Materials Science. 2021. link Times cited: 9 NOT USED (high confidence) N. Kamanina, A. Toikka, and I. Gladysheva, “ITO conducting coatings properties improvement via nanotechnology approach,” Nano Express. 2021. link Times cited: 2 Abstract: In this paper the investigation devoted to study and develop… read moreAbstract: In this paper the investigation devoted to study and development of the optimized ITO conducting layers are presented and discussed under the conditions of the materials surfaces laser structuration in order to apply the modified conducting materials in the optoelectronics, virus protection, solar energy, microscopy, biomedicine, etc. area. Based on our knowledge and expertise it is established the dramatic change of the main characteristics of the ITO matrix, which surface is modified by the carbon nanotubes (CNTs), and additionally treated by surface electromagnetic waves (SEW) as well. The transmittance and reflection spectral change, increase of the micro hardness and laser strength as well as the increase of the wetting angle and refraction change are discussed due to the covalent bonding between the carbon nanotubes and the near-surface atoms of the matrix materials. As the unique point of the study the effective decrease of the resistivity is established and presented. Quantum chemical simulations are supported the data presented. read less NOT USED (high confidence) M. Zojaji, A. Hydarinasab, S. Hashemabadi, and M. Mehranpour, “Rheological behaviour of shear thickening fluid of graphene oxide and SiO2 polyethylene glycol 400-based fluid with molecular dynamic simulation,” Molecular Simulation. 2021. link Times cited: 3 Abstract: ABSTRACT This study presents the influences of shear values … read moreAbstract: ABSTRACT This study presents the influences of shear values and temperature effects on shear thickening fluids by using the non-equilibrium molecular dynamic simulations. For this, the fluids were simulated with a low value of shear under constant temperature (300 K) and then the shear value increases to prepare thickening condition of the fluid. We calculate the viscosity of fluids with precise atomic arrangement via molecular dynamic approaches. In these methods, each atomic structure is represented by C, Si, O, and H atoms and an interatomic force field is implemented to describe their interactions. Molecular dynamic results show that, by increasing the inserted shear value, the viscosity of fluids increases and then decreases dramatically. The SiO2 atomic ratio variation shows that by increasing this physical parameter to 49.5%, the jamming viscosity reaches to 132.54 Pa.s. Furthermore, the temperature of the simulated system is a prominent parameter on the viscosity of the fluid and the jamming viscosity decreases to 37.24 Pa.s by increasing the temperature to 375 K. By increasing pressure in simulated structures, the jamming viscosity occurs with smaller rates. Finally, Rheological results show that, DREIDING and Universal force fields have the ability to simulate shear thickening fluids and correctly estimate their rheological behaviour. read less NOT USED (high confidence) B. Xu et al., “Scalable monolayer-functionalized nanointerface for thermal conductivity enhancement in copper/diamond composite,” Carbon. 2021. link Times cited: 14 NOT USED (high confidence) W. Su, C. Zhu, A. Hua, S. Li, and J. Zhao, “Fracture behavior dependent on crack-tip shapes in nanoscale crack-defect monolayer boron nitride sheets,” International Journal of Smart and Nano Materials. 2021. link Times cited: 3 Abstract: ABSTRACT Nanoscale defects, including cracks, circular holes… read moreAbstract: ABSTRACT Nanoscale defects, including cracks, circular holes, and the triangular-shaped defects, often occur in the growth of boron nitride nanosheets (BNNS). In this study, the fracture behavior of chiral BNNS with different crack-tip shapes and the interactions of nanoscale crack-defects are studied using molecular dynamics (MD) simulations and finite element (FE) analysis. Both MD and FE results indicate that the fracture strength of BNNS with two crack tips (t = 2) is significantly higher than that with one crack tip (t = 1), in which the difference in zigzag (ZZ) direction is more obvious than that in armchair (AC) direction, mainly due to the fact that the change of bond angles near the crack tips is more substantial in the ZZ direction than those in the AC direction. Our results show that the fracture strength of BNNS strongly depends on crack-tip shapes, chiral angles, the defect-to-crack tip spacing and deflection angles. Checking against the current MD simulations and FE analysis shows the present results are reasonable. This study should be of great importance for enhancing the fracture performance of BNNS by modulating their crack-tip shapes and the interactions of nanoscale crack-defects. Graphical abstract read less NOT USED (high confidence) Y. Ouyang, Z. Zhang, C. Yu, J. He, G. Yan, and J. C. hyperlinks, “Accuracy of Machine Learning Potential for Predictions of Multiple-Target Physical Properties,” Chinese Physics Letters. 2020. link Times cited: 9 NOT USED (high confidence) M. S. Islam, I. Mia, S. Ahammed, C. Stampfl, and J. Park, “Exceptional in-plane and interfacial thermal transport in graphene/2D-SiC van der Waals heterostructures,” Scientific Reports. 2020. link Times cited: 18 NOT USED (high confidence) N. Walet and F. Guinea, “Flat bands, strains, and charge distribution in twisted bilayer
h−BN,” Physical Review B. 2020. link Times cited: 12 Abstract: We study the effect of twisting on bilayer graphene. The eff… read moreAbstract: We study the effect of twisting on bilayer graphene. The effect of lattice relaxation is included; we look at the electronic structure, piezo-electric charges and spontaneous polarisation. We show that the electronic structure without lattice relaxation shows a set of extremely flat in-gap states similar to Landau-levels, where the spacing scales with twist angle. With lattice relaxation we still have flat bands, but now the spectrum becomes independent of twist angle for sufficiently small angles. We describe in detail the nature of the bands, and study appropriate continuum models, at the same time explaining the spectrum We find that even though the spectra for both parallel an anti-parallel alignment are very similar, the spontaneous polarisation effects only occur for parallel alignment. We argue that this suggests a large interlayer hopping between boron and nitrogen. read less NOT USED (high confidence) H. Mirhosseini, R. K. M. Raghupathy, S. Sahoo, H. Wiebeler, M. Chugh, and T. Kühne, “In silico investigation of Cu(In,Ga)Se2-based solar cells.,” Physical chemistry chemical physics : PCCP. 2020. link Times cited: 2 Abstract: Photovoltaics is one of the most promising and fastest-growi… read moreAbstract: Photovoltaics is one of the most promising and fastest-growing renewable energy technologies. Although the price-performance ratio of solar cells has improved significantly over recent years, further systematic investigations are needed to achieve higher performance and lower cost for future solar cells. In conjunction with experiments, computer simulations are powerful tools to investigate the thermodynamics and kinetics of solar cells. Over the last few years, we have developed and employed advanced computational techniques to gain a better understanding of solar cells based on copper indium gallium selenide (Cu(In,Ga)Se2). Furthermore, we have utilized state-of-the-art data-driven science and machine learning for the development of photovoltaic materials. In this Perspective, we review our results along with a survey of the field. read less NOT USED (high confidence) S. Sauze et al., “Integration of 3D nanographene into mesoporous germanium.,” Nanoscale. 2020. link Times cited: 3 Abstract: Graphene is a key material of interest for the modification … read moreAbstract: Graphene is a key material of interest for the modification of physicochemical surface properties. However, its flat surface is a limitation for applications requiring a high specific surface area. This restriction may be overcome by integrating 2D materials in a 3D structure. Here, a strategy for the controlled synthesis of Graphene-Mesoporous Germanium (Gr-MP-Ge) nanomaterials is presented. Bipolar electrochemical etching and chemical vapor infiltration were employed, respectively, for the nanostructuration of Ge substrate and subsequent 3D nanographene coating. While Raman spectroscopy reveals a tunable domain size of nanographene with the treatment temperature, transmission electron microscopy data confirm that the crystallinity of Gr-MP-Ge is preserved. X-ray photoelectron spectroscopy indicates the non-covalent bonding of carbon to Ge for Gr-MP-Ge. State-of-the-art molecular dynamics modeling provides a deeper understanding of the synthesis process through the presence of radicals. The successful synthesis of these nanomaterials offers the integration of nanographene into a 3D structure with a high aspect ratio and light weight, thereby opening avenues to a variety of applications for this versatile nanomaterial. read less NOT USED (high confidence) L. Bellucci, F. Delfino, and V. Tozzini, “In silico design, building and gas adsorption of nano-porous graphene scaffolds,” Nanotechnology. 2020. link Times cited: 3 Abstract: Graphene-based nano-porous materials (GNM) are potentially u… read moreAbstract: Graphene-based nano-porous materials (GNM) are potentially useful for all those applications needing a large specific surface area (SSA), typical of the bidimensional graphene, yet realized in the bulk dimensionality. Such applications include for instance gas storage and sorting, catalysis and electrochemical energy storage. While a reasonable control of the structure is achieved in micro-porous materials by using nano-micro particles as templates, the controlled production or even characterization of GNMs with porosity strictly at the nano-scale still raises issues. These are usually produced using dispersion of nano-flakes as precursors resulting in little control on the final structure, which in turn reflects in problems in the structural model building for computer simulations. In this work, we describe a strategy to build models for these materials with predetermined structural properties (SSA, density, porosity), which exploits molecular dynamics simulations, Monte Carlo methods and machine learning algorithms. Our strategy is inspired by the real synthesis process: starting from randomly distributed flakes, we include defects, perforation, structure deformation and edge saturation on the fly, and, after structural refinement, we obtain realistic models, with given structural features. We find relationships between the structural characteristics and size distributions of the starting flake suspension and the final structure, which can give indications for more efficient synthesis routes. We subsequently give a full characterization of the models versus H2 adsorption, from which we extract quantitative relationship between the structural parameters and the gravimetric density. Our results quantitatively clarify the role of surfaces and edges relative amount in determining the H2 adsorption, and suggest strategies to overcome the inherent physical limitations of these materials as adsorbers. We implemented the model building and analysis procedures in software tools, freely available upon request. read less NOT USED (high confidence) B. Sun, W. Ouyang, J. Gu, C. Wang, J. Wang, and L. Mi, “Formation of Moiré superstructure of epitaxial graphene on Pt(111): A molecular dynamic simulation investigation,” Materials Chemistry and Physics. 2020. link Times cited: 5 NOT USED (high confidence) M. Orhan, “Not So Far, Not So Close: A Configurational Study of a Carbon Nanotube Bundle for Better Dielectric Phenomena,” Bulletin of The Korean Chemical Society. 2020. link Times cited: 0 NOT USED (high confidence) A. Sircar, P. Patra, and R. Batra, “Casimir force and its effects on pull-in instability modelled using molecular dynamics simulations,” Proceedings of the Royal Society A. 2020. link Times cited: 3 Abstract: We present a new methodology to incorporate the Casimir forc… read moreAbstract: We present a new methodology to incorporate the Casimir forces within the molecular dynamics (MD) framework. At atomistic scales, the potential energy between two particles arising due to the Casimir effect can be represented as U(rij) = C/r7. Incorporating the Casimir effect in MD simulations requires the knowledge of C, a problem hitherto unsolved. We overcome this by equating the total potential energy contributions due to each atomistic pair with the potential energy of continuum scale interacting bodies having similar geometries. After having identified the functional form of C, standard MD simulations are augmented with the potential energy contribution due to pairwise Casimir interactions. The developed framework is used to study effects of the Casimir force on the pull-in instability of rectangular and hollow cylindrical shaped deformable electrodes separated by a small distance from a fixed substrate electrode. Our MD results for pull-instability qualitatively agree with the previously reported analytical results but are quantitatively different. The effect of using longer-ranged Casimir forces in a constant temperature environment on the pull-in behaviour has also been studied. read less NOT USED (high confidence) S. Lee et al., “Applying Machine Learning Algorithms to Predict Potential Energies and Atomic Forces during C-H Activation,” Journal of the Korean Physical Society. 2020. link Times cited: 2 Abstract: Molecular dynamics (MD) simulations are useful in understand… read moreAbstract: Molecular dynamics (MD) simulations are useful in understanding the interaction between solid materials and molecules. However, performing MD simulations is possible only when interatomic potentials are available and constructing such interatomic potentials usually requires additional computational work. Recently, generating interatomic potentials was shown to be much easier when machine learning (ML) algorithms were used. In addition, ML algorithms require new descriptors for improved performance. Here, we present an ML approach with several categories of atomic descriptors to predict the parameters necessary for MD simulations, such as the potential energies and the atomic forces. We propose several atomic descriptors based on structural information and find that better descriptors can be generated from eXtreme gradient boosting (XGBoost). Moreover, we observe fewer descriptors that perform better in predicting the potential energies and the forces during methane activation processes on a catalytic Pt(111) surface. These results were consistently observed in two different ML algorithms: fully-connected neural network (FNN) and XGBoost. Taking into account the advantages of FNN and XGBoost, we propose an efficient ML model for estimating potential energies. Our findings will be helpful in developing new ML potentials for long-time MD simulations. read less NOT USED (high confidence) S. M. Khosrownejad, J. Kermode, and L. Pastewka, “Quantitative prediction of the fracture toughness of amorphous carbon from atomic-scale simulations,” Physical Review Materials. 2020. link Times cited: 3 Abstract: Fracture is the ultimate source of failure of amorphous carb… read moreAbstract: Fracture is the ultimate source of failure of amorphous carbon (a-C) films, however it is challenging to measure fracture properties of a-C from nano-indentation tests and results of reported experiments are not consistent. Here, we use atomic-scale simulations to make quantitative and mechanistic predictions on fracture of a-C. Systematic large-scale K-field controlled atomic-scale simulations of crack propagation are performed for a-C samples with densities of $\rho=2.5, \, 3.0 \, \text{ and } 3.5~\text{g/cm}^{3}$ created by liquid quenches for a range of quench rates $\dot{T}_q = 10 - 1000~\text{K/ps}$. The simulations show that the crack propagates by nucleation, growth, and coalescence of voids. Distances of $ \approx 1\, \text{nm}$ between nucleated voids result in a brittle-like fracture toughness. We use a crack growth criterion proposed by Drugan, Rice \& Sham to estimate steady-state fracture toughness based on our short crack-length fracture simulations. Fracture toughness values of $2.4-6.0\,\text{MPa}\sqrt{\text{m}}$ for initiation and $3-10\,\text{MPa}\sqrt{\text{m}}$ for the steady-state crack growth are within the experimentally reported range. These findings demonstrate that atomic-scale simulations can provide quantitatively predictive results even for fracture of materials with a ductile crack propagation mechanism. read less NOT USED (high confidence) M. Papanikolaou, F. Hernández, and K. Salonitis, “Investigation of the Subsurface Temperature Effects on Nanocutting Processes via Molecular Dynamics Simulations,” Metals. 2020. link Times cited: 5 Abstract: In this investigation, three-dimensional molecular dynamics … read moreAbstract: In this investigation, three-dimensional molecular dynamics simulations have been performed in order to investigate the effects of the workpiece subsurface temperature on various nanocutting process parameters including cutting forces, friction coefficient, as well as the distribution of temperature and equivalent Von Mises stress at the subsurface. The simulation domain consists of a tool with a negative rake angle made of diamond and a workpiece made of copper. The grinding speed was considered equal to 100 m/s, while the depth of cut was set to 2 nm. The obtained results suggest that the subsurface temperature significantly affects all of the aforementioned nanocutting process parameters. More specifically, it has been numerically validated that, for high subsurface temperature values, thermal softening becomes dominant and this results in the reduction of the cutting forces. Finally, the dependency of local properties of the workpiece material, such as thermal conductivity and residual stresses on the subsurface temperature has been captured using numerical simulations for the first time to the authors’ best knowledge. read less NOT USED (high confidence) L. Pizzagalli, “Finite-temperature mechanical properties of nanostructures with first-principles accuracy,” Physical Review B. 2020. link Times cited: 6 Abstract: This article reports an original approach allowing to simula… read moreAbstract: This article reports an original approach allowing to simulate the compression at finite temperature of nanostructures, based on the combination of external forces with Car-Parrinello molecular dynamics. An example of a successful application is described, the compression of buckminster-fullerene C60 at room temperature. It is shown that the C60 shell breaks at much lower strains than previously predicted, with a maximum contact force of 30 nN. This simple example demonstrates the potential of this approach, which can be especially useful to determine the mechanical properties of nanoparticles and clusters with an outstanding accuracy. read less NOT USED (high confidence) C. Fernandez et al., “Progress and challenges in self-healing cementitious materials,” Journal of Materials Science. 2020. link Times cited: 32 NOT USED (high confidence) H. Li, Z.-F. Shao, R. Feng, Y. Qi, Q. Wu, and C. Lei, “Subsurface defect evolution and crystal-structure transformation of single-crystal copper in nanoscale combined machining,” Philosophical Magazine. 2020. link Times cited: 2 Abstract: ABSTRACT In the paper, molecular dynamics simulation is appl… read moreAbstract: ABSTRACT In the paper, molecular dynamics simulation is applied to study the evolution and distribution of subsurface defects during nanoscale machining process of single-crystal copper. The chip-removal mechanism and the machined-surface-generative mechanism are examined through analysis of the dislocation evolution and atomic migration of the workpieces. The findings show that under different stresses and temperatures, the difference of the binding energy leads to a zoned phenomenon in the chip. Owing to elastic deformation, some of the dislocations could be recovered and form surface steps; moreover, the work hardening of the workpiece can be achieved on account of generation of twin boundaries, Lomer-Cottrell dislocations, and stacking fault tetrahedra (SFT) by plastic deformation. A process of evolution of an immobile dislocation group containing stair-rod dislocations into SFT is discovered, which is different from the traditional Silcox-Hirsch mechanism. Furthermore, a growth oscillation phenomenon, which corresponding stacking fault planes growth and retraction during the formation of the stable SFT, is discussed. read less NOT USED (high confidence) A. V. Rumyantsev, A. Prikhodko, and N. Borgardt, “Study of Gallium-Ion-Induced Silicon Amorphization by Matching Experimental and Simulated Electron-Microscopy Images,” Journal of Surface Investigation: X-ray, Synchrotron and Neutron Techniques. 2020. link Times cited: 0 NOT USED (high confidence) S. Ciarella et al., “Soft Particles at Liquid Interfaces: From Molecular Particle Architecture to Collective Phase Behavior.,” Langmuir : the ACS journal of surfaces and colloids. 2020. link Times cited: 17 Abstract: Soft particles such as microgels can undergo significant and… read moreAbstract: Soft particles such as microgels can undergo significant and anisotropic deformations when adsorbed to a liquid interface. This, in turn, leads to a complex phase behavior upon compression. To date, experimental efforts have predominantly provided phenomenological links between microgel structure and resulting interfacial behavior, while simulations have not been entirely successful in reproducing experiments or predicting the minimal requirements for the desired phase behavior. Here, we develop a multiscale framework to link the molecular particle architecture to the resulting interfacial morphology and, ultimately, to the collective interfacial phase behavior. To this end, we investigate interfacial morphologies of different poly(N-isopropylacrylamide) particle systems using phase-contrast atomic force microscopy and correlate the distinct interfacial morphology with their bulk molecular architecture. We subsequently introduce a new coarse-grained simulation method that uses augmented potentials to translate this interfacial morphology into the resulting phase behavior upon compression. The main novelty of this method is the possibility to efficiently encode multibody interactions, the effects of which are key to distinguishing between heterostructural (anisotropic collapse) and isostructural (isotropic collapse) phase transitions. Our approach allows us to qualitatively resolve existing discrepancies between experiments and simulations. Notably, we demonstrate the first in silico account of the two-dimensional isostructural transition, which is frequently found in experiments but elusive in simulations. In addition, we provide the first experimental demonstration of a heterostructural transition to a chain phase in a single-component system, which has been theoretically predicted decades ago. Overall, our multiscale framework provides a phenomenological bridge between physicochemical soft-particle characteristics at the molecular scale and nanoscale and the collective self-assembly phenomenology at the macroscale, serving as a stepping stone toward an ultimately more quantitative and predictive design approach. read less NOT USED (high confidence) M. Alam, L. Lymperakis, and J. Neugebauer, “Phase diagram of grain boundary facet and line junctions in silicon,” Physical Review Materials. 2020. link Times cited: 1 Abstract: The presence of facets and line junctions connecting facets … read moreAbstract: The presence of facets and line junctions connecting facets on grain boundaries (GBs) has a strong impact on the properties of structural, functional, and optoelectronic materials: They govern the mobility of interfaces, the segregation of impurities, as well the electronic properties. In the present paper, we employ density-functional theory and modified embedded atom method calculations to systematically investigate the energetics and thermodynamic stability of these defects. As a prototype system, we consider (cid:2) 3 tilt GBs in Si. By analyzing the energetics of different faceted GBs, we derive a diagram that describes and predicts the reconstruction of these extended defects as a function of facet length and boundary inclination angle. The phase diagram sheds light upon the fundamental mechanisms causing GB faceting phenomena. It demonstrates that the properties of faceting are not determined solely by anisotropic GB energies but by a complex interplay between geometry and microstructure, boundary energies as well as long-range strain interactions. read less NOT USED (high confidence) Y. Cui, M. Li, and Y. Hu, “Emerging interface materials for electronics thermal management: experiments, modeling, and new opportunities,” Journal of Materials Chemistry C. 2020. link Times cited: 63 Abstract: Thermal management is becoming a critical technology challen… read moreAbstract: Thermal management is becoming a critical technology challenge for modern electronics with decreasing device size and increasing power density. One key materials innovation is the development of advanced thermal interfaces in electronic packaging to enable efficient heat dissipation and improve device performance, which has attracted intensive research efforts from both academia and industry over the past several decades. Here we review the recent progress in both theory and experiment for developing high-performance thermal interface materials. First, the basic theories and computational frameworks for interface energy transport are discussed, ranging from atomistic interface scattering to multiscale disorders that contributed to thermal boundary resistance. Second, state-of-the-art experimental techniques including steady-state and transient thermal measurements are discussed and compared. Moreover, the important structure design, requirements, and property factors for thermal interface materials depending on different applications are summarized and exemplified with the recent literature. Finally, emerging new semiconductors and polymers with high thermal conductivity are briefly reviewed and opportunities for future research are discussed. read less NOT USED (high confidence) D. Ma, G. Zhang, and L. Zhang, “Interface thermal conductance between β-Ga2O3 and different substrates,” Journal of Physics D: Applied Physics. 2020. link Times cited: 11 Abstract: The ultra-large bandgap semiconductor, β-Ga2O3, has shown gr… read moreAbstract: The ultra-large bandgap semiconductor, β-Ga2O3, has shown great potential in application of power electronics with capabilities beyond existing materials. However, due to its ultra-low thermal conductivity, interface thermal conductance (ITC) between β-Ga2O3 and substrate becomes one of the key points to facilitate heat dissipation of devices. In this paper, the ITC between β-Ga2O3 and different substrates (SiO2, 4 H-SiC, α-Al2O3 and Si) is investigated through combing of Landauer formula with the acoustic mismatch model (AMM) and diffusive mismatch model (DMM). It is found that Ga2O3/Si interface has the largest ITC of 1.01 GW m−2 K−1 (0.47 GW m−2 K−1) by AMM (DMM) at 300 K, and Ga2O3/SiO2 interface has the smallest ITC of 0.54 GW m−2 K−1 (0.23 GW m−2 K−1) by AMM (DMM) at 300 K. In between, the ITC of Ga2O3/Al2O3 interface is larger than that of Ga2O3/SiC interface. Regardless of the difference in absolute values of ITCs, the rule for the relative magnitudes of ITCs for the four interfaces is the same for AMM and DMM predictions. The underlying physical mechanism for the difference in ITC of different interfaces is clarified by phonon transmission function and mismatches of impedance and phonon density of states. The study can provide guidance for thermal management and is of great importance for the design of β-Ga2O3 based device. read less NOT USED (high confidence) L. Safina, J. Baimova, K. Krylova, R. Murzaev, and R. Mulyukov, “Simulation of metal-graphene composites by molecular dynamics: a review,” Letters on Materials. 2020. link Times cited: 20 Abstract: Fabrication of the new composite materials with improved mec… read moreAbstract: Fabrication of the new composite materials with improved mechanical characteristics is of high interest nowadays. Simulation methods can considerably improve understanding of the interaction between the graphene and metal phase, even in the atomistic level. In the present work, the simulation of graphene-metal composites by molecular dynamics is reviewed. Both experiments and simulation results have shown that the metal matrix can be reinforced with graphene flakes, and the overall mechanical properties of the final composite structure can be significantly improved. Two basic types of metal-graphene composite structures are considered: (i) metal matrix strengthens by graphene flakes and (ii) crumpled graphene (the porous structure that consists of crumpled graphene flakes connected by van der Waals forces) as the matrix for metal nanoparticles. Several different types of interatomic potentials like pairwise Lennard-Jones or Morse or complex bond order potentials for the description of metal-carbon interaction are presented and discussed. It is shown that even simple interatomic potentials can be effectively used for the molecular dynamics simulation of graphene-metal composites. Particular attention is paid to graphene-Ni composites obtained by deformation and heat treatment from crumpled graphene with pores filled with Ni nanoparticles. It is shown, that high-temperature compression can be effectively used for the fabrication of the graphene-Ni composite with improved mechanical properties. read less NOT USED (high confidence) S. Ghaderzadeh, V. Ladygin, M. Ghorbani-Asl, G. Hlawacek, M. Schleberger, and A. Krasheninnikov, “Freestanding and Supported MoS2 Monolayers under Cluster Irradiation: Insights from Molecular Dynamics Simulations.,” ACS applied materials & interfaces. 2020. link Times cited: 12 Abstract: Two-dimensional (2D) materials with nanometer-size holes are… read moreAbstract: Two-dimensional (2D) materials with nanometer-size holes are promising systems for DNA sequencing, water purification, and molecule selection/separation. However, controllable creation of holes with uniform sizes and shapes is still a challenge, especially when the 2D material consists of several atomic layers as, e.g., MoS2, the archetypical transition metal dichalcogenide. We use analytical potential molecular dynamics simulations to study the response of 2D MoS2 to cluster irradiation. We model both freestanding and supported sheets and assess the amount of damage created in MoS2 by the impacts of noble gas clusters in a wide range of cluster energies and incident angles. We show that cluster irradiation can be used to produce uniform holes in 2D MoS2 with the diameter being dependent on cluster size and energy. Energetic clusters can also be used to displace sulfur atoms preferentially from either top or bottom layers of S atoms in MoS2 and also clean the surface of MoS2 sheets from adsorbents. Our results for MoS2, which should be relevant to other 2D transition metal dichalcogenides, suggest new routes toward cluster beam engineering of devices based on 2D inorganic materials. read less NOT USED (high confidence) S. I. Kundalwal, V. Choyal, N. Luhadiya, and V. Choyal, “Effect of carbon doping on electromechanical response of boron nitride nanosheets,” Nanotechnology. 2020. link Times cited: 17 Abstract: The electromechanical response of hexagonal-boron nitride na… read moreAbstract: The electromechanical response of hexagonal-boron nitride nanosheets (h-BNSs) was studied via molecular dynamics simulations (MDS) with a three-body Tersoff potential force field using a charge-dipole (C-D) potential model. Carbon (C)-doped h-BNSs with triangular, trapezoidal and circular pores were considered. The elastic and piezoelectric coefficients of h-BNSs under tension and shear loading conditions were determined. The induced polarization in h-BNSs was found to depend on the local arrangement of C atoms around B and N atoms, and the polarization increases if C atoms are surrounded by N atoms. This is attributed to the generation of higher dipole moments due to C–N bonds compared with C–B bonds. At ∼5.5% C-doping concentration, the axial piezoelectric coefficient of doped h-BNSs with triangular and trapezoidal pores increased by 18.5% and 3.5%, respectively, while it reduced by 22.5% in the case of circular pores compared to pristine h-BNS. The shear piezoelectric coefficient of C-doped h-BNSs with triangular and trapezoidal pores increased by 20.5% and 1%, respectively, while it reduced by 7% in case of circular pores. Young’s moduli of C-doped h-BNSs with triangular, trapezoidal and circular pores increased by 9%, 7.5% and 5.5%, respectively, due to the C–C bonds being stronger than all other bonds. The respective improvements in shear moduli are 8.5%, 5% and 5%. The elastic and piezoelectric properties of armchair h-BNSs were found to be higher than zigzag h-BNSs. The results also reveal that the piezoelectric coefficient increases as doping increases; it reaches its maximum value around 0.41 C m−2 at 12.6% C-doping concentration and then starts decreasing. The present work shows that we can engineer the electromechanical response of h-BNSs via novel pathways such as different types and size of pores as well as C-doping concentration to suit a particular nanoelectromechanical systems (NEMS) application. read less NOT USED (high confidence) V. Vijayaraghavan and L. Zhang, “Consistent Computational Modeling of Mechanical Properties of Carbon and Boron Nitride Nanotubes,” JOM. 2020. link Times cited: 7 NOT USED (high confidence) F. Thiemann, P. Rowe, E. A. Müller, and A. Michaelides, “Machine Learning Potential for Hexagonal Boron Nitride Applied to Thermally and Mechanically Induced Rippling,” The Journal of Physical Chemistry C. 2020. link Times cited: 18 Abstract: We introduce an interatomic potential for hexagonal boron ni… read moreAbstract: We introduce an interatomic potential for hexagonal boron nitride (hBN) based on the Gaussian approximation potential (GAP) machine learning methodology. The potential is based on a training set of... read less NOT USED (high confidence) D. Mora‐Fonz et al., “Real and virtual polymorphism of titanium selenide with robust interatomic potentials,” Journal of Materials Chemistry A. 2020. link Times cited: 5 Abstract: The first successful pairwise potential for a layered materi… read moreAbstract: The first successful pairwise potential for a layered material, TiSe2, has been parameterised to fit the experimental data, using a genetic algorithm as the optimisation tool for the parameters of the interatomic potential. read less NOT USED (high confidence) H. Wang et al., “Investigation on electronic and mechanical properties of penta-graphene nanotubes,” Journal of Materials Science. 2020. link Times cited: 11 NOT USED (high confidence) C. Zhao, F. Liu, X. Kong, T. Yan, and F. Ding, “The wrinkle formation in graphene on transition metal substrate: a molecular dynamics study,” International Journal of Smart and Nano Materials. 2020. link Times cited: 8 Abstract: ABSTRACT To explore the mechanism of the wrinkle formation i… read moreAbstract: ABSTRACT To explore the mechanism of the wrinkle formation in graphene on transition metal substrate, a molecular dynamics (MD) simulation package that allows us to simulate systems of millions of atoms was developed. Via the MD simulation, we reveal the detailed kinetics of wrinkles formation on a Cu substrate under compressive strain, from nucleation to one-dimensional propagation and then the splitting of a large wrinkle to a few smaller ones, which is in good conformity with experimental observation. Further study reveals that both friction and the adhesion between graphene and Cu substrate are critical for the wrinkle formation and wrinkles can be easily formed with a lower frictional force and/or a smaller adhesion. Finally, we have shown that impurities in graphene or substrates can greatly facilitate the nucleation of wrinkles. The systematic exploration of the wrinkle formation in graphene on a substrate is expected to facilitate the experimental designs for the controllable synthesis of high-quality graphene. read less NOT USED (high confidence) A. Guajardo-Cuéllar, D. Go, and M. Sen, “Analysis of Energy Transport Behavior and Geometric Effects in Graphene,” Frontiers of Mechanical Engineering. 2020. link Times cited: 0 Abstract: Graphene is an excellent heat conductor, with the potential … read moreAbstract: Graphene is an excellent heat conductor, with the potential to be used as a heat spreader for applications where there are fast, transient heat pulses. In this study we analyze and describe energy transport in graphene subject to an initial pulse of energy. We analyze the effects of using harmonic, anharmonic, and a non-linear (Tersoff) potentials to describe the transient energy transport and compare these to classical continuum descriptions. The energy pulse produces pure wave-like behavior and a spatial energy distribution that has geometric features similar to the graphene geometry itself. Depending on the potential used, the energy travels outward from the impulse location following a similar pattern as the hexagonal shape of graphene. This pattern is clearly identified when the transport is treated with a harmonic potential. Increasing the anharmonicity and non-linearity dampens this effect and results in thermal transport that does not follow the geometry of graphene. read less NOT USED (high confidence) V. Vijayaraghavan and L. Zhang, “Tensile Properties of Boron Nitride-Carbon Nanosheet-Reinforced Aluminum Nanocomposites Using Molecular Dynamics Simulation,” JOM. 2020. link Times cited: 9 NOT USED (high confidence) C. Liu, J. Zhang, J. Zhang, X. Chen, J. Xiao, and J. Xu, “A simulation investigation on elliptical vibration cutting of single-crystal silicon,” The International Journal of Advanced Manufacturing Technology. 2020. link Times cited: 8 NOT USED (high confidence) T. M. L. Nguyen, V. V. Hoang, and H. Nguyen, “Structural evolution of free-standing 2D silicon carbide upon heating,” The European Physical Journal D. 2020. link Times cited: 3 NOT USED (high confidence) M. Mirakhory, M. M. Khatibi, and S. Sadeghzadeh, “Nanoparticle mass detection by single-layer triangular graphene sheets, the extraordinary geometry for detection of nanoparticles,” Journal of Nanoparticle Research. 2020. link Times cited: 4 NOT USED (high confidence) C. Liu, J. Zhang, J. Zhang, X. Chen, J. Xiao, and J. Xu, “A simulation investigation on elliptical vibration cutting of single-crystal silicon,” The International Journal of Advanced Manufacturing Technology. 2020. link Times cited: 0 NOT USED (high confidence) A. Galashev, K. Ivanichkina, K. Katin, and M. Maslov, “Computer Test of a Modified Silicene/Graphite Anode for Lithium-Ion Batteries,” ACS Omega. 2020. link Times cited: 20 Abstract: Despite the considerable efforts made to use silicon anodes … read moreAbstract: Despite the considerable efforts made to use silicon anodes and composites based on them in lithium-ion batteries, it is still not possible to overcome the difficulties associated with low conductivity, a decrease in the bulk energy density, and side reactions. In the present work, a new design of an electrochemical cell, whose anode is made in the form of silicene on a graphite substrate, is presented. The whole system was subjected to transmutation neutron doping. The molecular dynamics method was used to study the intercalation and deintercalation of lithium in a phosphorus-doped silicene channel. The maximum uniform filling of the channel with lithium is achieved at 3% and 6% P-doping of silicene. The high mobility of Li atoms in the channel creates the prerequisites for the fast charging of the battery. The method of statistical geometry revealed the irregular nature of the packing of lithium atoms in the channel. Stresses in the channel walls arising during its maximum filling with lithium are significantly inferior to the tensile strength even in the presence of polyvacancies in doped silicene. The proposed design of the electrochemical cell is safe to operate. read less NOT USED (high confidence) S. Wang and K. Komvopoulos, “Structure evolution during deposition and thermal annealing of amorphous carbon ultrathin films investigated by molecular dynamics simulations,” Scientific Reports. 2020. link Times cited: 24 NOT USED (high confidence) J. Nandy, S. Sahoo, N. Yedla, and H. Sarangi, “Molecular dynamics simulation of coalescence kinetics and neck growth in laser additive manufacturing of aluminum alloy nanoparticles,” Journal of Molecular Modeling. 2020. link Times cited: 16 NOT USED (high confidence) A. Galashev and K. Ivanichkina, “Computer Study of Silicene Applicability in Electrochemical Devices,” Journal of Structural Chemistry. 2020. link Times cited: 6 NOT USED (high confidence) K. Momeni et al., “Multiscale computational understanding and growth of 2D materials: a review,” npj Computational Materials. 2020. link Times cited: 85 NOT USED (high confidence) N. Li and J. Liu, “Accessing general relations for temperature coefficients of Raman shifts in 2D materials,” Journal of Physics: Condensed Matter. 2020. link Times cited: 3 Abstract: The temperature coefficient of Raman shifts, which regulates… read moreAbstract: The temperature coefficient of Raman shifts, which regulates the linear-in-temperature dependence of Raman shifts, plays a vital role in the experimental determinations of thermal conductivities in two-dimensional (2D) materials. Originating from anharmonic phonon effects, however, its connection to the underlying phonon structure remains poorly understood. Here, we explore the possibility of a simple albeit general relation that relates temperature coefficients to frequencies of the associated phonon modes in 2D materials. Remarkably, by resorting to a renormalized phonon picture, we explicitly show that the ratio between the temperature coefficient of Raman shifts and the associated phonon frequency is almost a constant that is varied only among materials. Our general relation fits well to experimental results for typical 2D materials and may have implications for addressing the impact of anharmonic phonon effects on thermal conductivities in 2D materials. read less NOT USED (high confidence) G. Chen, J. Chen, and Z.-liang Wang, “Thermal Transport at Interface Between Single-Layer Graphene and Water Film,” International Journal of Thermophysics. 2020. link Times cited: 2 NOT USED (high confidence) B. Sharma and A. Parashar, “A review on thermo-mechanical properties of bi-crystalline and polycrystalline 2D nanomaterials,” Critical Reviews in Solid State and Materials Sciences. 2020. link Times cited: 29 Abstract: Due to outstanding properties, graphene and h-BN nanosheets … read moreAbstract: Due to outstanding properties, graphene and h-BN nanosheets are emerging as a potential candidate for wide spectrum of applications in the field of engineering and bio-medical science. Graphene and h-BN nanosheets have comparable mechanical and thermal properties, whereas due to high band gap h-BN (∼5eV) have contrasting electrical conductivities. Large size graphene and h-BN nanosheets are synthesized by chemical vapor deposition technique, which results in polycrystalline atomic structure. These polycrystalline nanosheets are characterized either by experimental means or numerical simulations. Experimental techniques are considered as most accurate and practical, but cost and time involved in these techniques limits it application at the nanoscale level. On the other hand, atomistic modeling techniques are emerging as viable alternatives to the experimentations, and are accurate enough to predict the mechanical properties, fracture toughness, and thermal conductivities of polycrystalline graphene and h-BN nanosheets. This comprehensive review article encompasses different characterizing techniques used by the researchers for polycrystalline nanosheets. This review will help in elaborating the properties of polycrystalline graphene and h-BN, and also establishing a perspective on how the microstructure impacts its large-scale physical properties. read less NOT USED (high confidence) Á. Jász, Á. Rák, I. Ladjánszki, and G. Cserey, “Classical molecular dynamics on graphics processing unit architectures,” Wiley Interdisciplinary Reviews: Computational Molecular Science. 2020. link Times cited: 6 Abstract: Molecular dynamics (MD) has experienced a significant growth… read moreAbstract: Molecular dynamics (MD) has experienced a significant growth in the recent decades. Simulating systems consisting of hundreds of thousands of atoms is a routine task of computational chemistry researchers nowadays. Thanks to the straightforwardly parallelizable structure of the algorithms, the most promising method to speed‐up MD calculations is exploiting the large‐scale processing power offered by the parallel hardware architecture of graphics processing units or GPUs. Programming GPUs is becoming easier with general‐purpose GPU computing frameworks and higher levels of abstraction. In the recent years, implementing MD simulations on graphics processors has gained a large interest, with multiple popular software packages including some form of GPU‐acceleration support. Different approaches have been developed regarding various aspects of the algorithms, with important differences in the specific solutions. Focusing on published works in the field of classical MD, we describe the chosen implementation methods and algorithmic techniques used for porting to GPU, as well as how recent advances of GPU architectures will provide even more optimization possibilities in the future. read less NOT USED (high confidence) A. Galashev and K. Ivanichkina, “Silicene Anodes for Lithium-Ion Batteries on Metal Substrates,” Journal of The Electrochemical Society. 2020. link Times cited: 20 NOT USED (high confidence) G. Liang et al., “Molecular Dynamics Simulations of Vacancy Generation and Migration near a Monocrystalline Silicon Surface during Energetic Cluster Ion Implantation,” Coatings. 2020. link Times cited: 1 Abstract: The process of ion implantation often involves vacancy gener… read moreAbstract: The process of ion implantation often involves vacancy generation and migration. The vacancy generation and migration near a monocrystalline silicon surface during three kinds of energetic Si35 cluster ion implantations were investigated by molecular dynamics simulations in the present work. The patterns of vacancy generation and migration, as well as the implantation-induced amorphous structure, were analyzed according to radial distribution function, Wigner–Seitz cell, and identify diamond structure analytical methods. A lot of vacancies rapidly generate and migrate in primary directions and form an amorphous structure in the first two picoseconds. The cluster with higher incident kinetic energy can induce the generation and migration of more vacancies and a deeper amorphous structure. Moreover, boundaries have a loading–unloading effect, where interstitial atoms load into the boundary, which then acts as a source, emitting interstitial atoms to the target and inducing the generation of vacancies again. These results provide more insight into doping silicon via ion implantation. read less NOT USED (high confidence) V. Reshetniak and A. Aborkin, “Aluminum–Carbon Interaction at the Aluminum–Graphene and Aluminum–Graphite Interfaces,” Journal of Experimental and Theoretical Physics. 2020. link Times cited: 8 NOT USED (high confidence) C. Liu et al., “Influence of micro grooves of diamond tool on silicon cutting: a molecular dynamic study,” Molecular Simulation. 2020. link Times cited: 2 Abstract: ABSTRACT During single-point diamond turning of hard and bri… read moreAbstract: ABSTRACT During single-point diamond turning of hard and brittle materials, tool wear is a dominant factor that influences machinability. In the wear process, micro grooves on the flank face is an important character of tool wear, which leads to the formation of subcutting edges and the ductile to brittle transition. In this paper, classical molecular dynamic simulations of nanometric cutting of silicon by a diamond tool with V-shape grooves were carried out to explore the effect of groove geometry on the workpiece and tool integrity. The evolution of tool wear and machined surface integrity was discussed. Simulation result shows that grooves have a significant influence on the stress and temperature distributions of the tool, which has a great influence on tool deterioration. Grooves with sharp edges will lead to severe tool wear and bring deep subsurface damage of the machined surface. However, the subsurface damage of the machined surface can be restrained with blunt grooves since the pressure is reduced. With a comprehensive understanding and controlling of groove, tool wear can be suppressed and high-quality surface can be achieved. read less NOT USED (high confidence) F. Elahi, Z. Zhang, and Z. Hossain, “Toughness and strength anisotropy among high-symmetry directions in 3C-SiC,” Journal of Applied Physics. 2020. link Times cited: 8 Abstract: This paper presents a quantitative understanding of toughnes… read moreAbstract: This paper presents a quantitative understanding of toughness and strength anisotropy in 3 C-SiC under uniaxial deformation. We consider four high-symmetry crystallographic directions including [100], [110], [111], and [ 11 2 ¯ ] for loading, and find that both toughness and strength are the maximum along the [100] direction and the minimum along the [111] direction. The maximum anisotropy in crack nucleation-toughness is 145% and in fracture toughness 126%, relative to the [111] direction. The corresponding anisotropies in fracture strain and fracture strength are found to be 62% and 36%, respectively. An atomistic analysis shows that bonds deform uniformly for loading along the [100] direction, whereas for loading along the [110], [111], or [ 11 2 ¯] directions, bonds deform nonuniformly and it breaks the symmetry of the local atomic structure. The nonuniform bond deformation creates different sets of bond lengths and forms the atomistic basis for the direction-dependent mechanical behavior. The simulations are conducted with four different interatomic potentials including the Stillinger-Weber, Tersoff, Vashishta, and Environment Dependent Interatomic Potentials. It is found that only the Stillinger-Weber potential exhibits first-principles accurate strength and toughness as well as brittlelike fracture. Also, there is a sizeable difference among the potentials in terms of the crack nucleation toughness and strength. We find the difference to originate from the dissimilarity in the forcing function and its derivative in the nonlinear regime of mechanical deformation. A mathematical analysis suggests that it is essential for the forcing function to accurately represent the first-principles accurate forcing function, at least up to the maximum bond force, to produce accurate fracture properties and patterns. read less NOT USED (high confidence) L. Bellucci and V. Tozzini, “Engineering 3D Graphene-Based Materials: State of the Art and Perspectives,” Molecules. 2020. link Times cited: 14 Abstract: Graphene is the prototype of two-dimensional (2D) materials,… read moreAbstract: Graphene is the prototype of two-dimensional (2D) materials, whose main feature is the extremely large surface-to-mass ratio. This property is interesting for a series of applications that involve interactions between particles and surfaces, such as, for instance, gas, fluid or charge storage, catalysis, and filtering. However, for most of these, a volumetric extension is needed, while preserving the large exposed surface. This proved to be rather a hard task, especially when specific structural features are also required (e.g., porosity or density given). Here we review the recent experimental realizations and theoretical/simulation studies of 3D materials based on graphene. Two main synthesis routes area available, both of which currently use (reduced) graphene oxide flakes as precursors. The first involves mixing and interlacing the flakes through various treatments (suspension, dehydration, reduction, activation, and others), leading to disordered nanoporous materials whose structure can be characterized a posteriori, but is difficult to control. With the aim of achieving a better control, a second path involves the functionalization of the flakes with pillars molecules, bringing a new class of materials with structure partially controlled by the size, shape, and chemical-physical properties of the pillars. We finally outline the first steps on a possible third road, which involves the construction of pillared multi-layers using epitaxial regularly nano-patterned graphene as precursor. While presenting a number of further difficulties, in principle this strategy would allow a complete control on the structural characteristics of the final 3D architecture. read less NOT USED (high confidence) J. Zhang et al., “Effects of interlayer interactions on the nanoindentation response of freely suspended multilayer gallium telluride,” Nanotechnology. 2019. link Times cited: 11 Abstract: Freestanding indentation is a widely used method to characte… read moreAbstract: Freestanding indentation is a widely used method to characterise the elastic properties of two-dimensional (2D) materials. However, many controversies and confusion remain in this field due to the lack of appropriate theoretical models in describing the indentation responses of 2D materials. Taking the multilayer gallium telluride (GaTe) as an example, in this paper we conduct a series of experiments and simulations to achieve a comprehensive understanding of its freestanding indentation behaviours. Specifically, the freestanding indentation experiments show that the elastic properties of the present multilayer GaTe with a relatively large thickness can only be extracted from the bending stage in the indentation process rather than the stretching stage widely utilised in the previous studies on thin 2D materials, since the stretching stage of thick 2D materials is inevitably accompanied with severe plastic deformations. In combination with existing continuum mechanical models and finite element simulations, an extremely small Young’s modulus of multilayer GaTe is obtained from the nanoindentation experiments, which is two orders of magnitude smaller than the value obtained from first principles calculations. Our molecular dynamics (MD) simulations reveal that this small Young’s modulus can be attributed to the significant elastic softening in the multilayer GaTe with increasing thickness and decreasing length. It is further revealed in MD simulations that this size-induced elastic softening originates from the synergistic effects of interlayer compression and interlayer shearing in the multilayer GaTe, both of which, however, are ignored in the existing indentation models. To consider these effects of interlayer interactions in the theoretical modelling of the freestanding indentation of multilayer GaTe, we propose here novel multiple-beam and multiple-plate models, which are found to agree well with MD results without any additional parameters fitting and thus can be treated as more precise theoretical models in characterising the freestanding indentation behaviours of 2D materials. read less NOT USED (high confidence) Y. Nan, D. Tan, J. Zhao, M. Willatzen, and Z. L. Wang, “Shape- and size dependent piezoelectric properties of monolayer hexagonal boron nitride nanosheets,” Nanoscale Advances. 2019. link Times cited: 8 Abstract: We use molecular dynamics simulations (MD) to study piezoele… read moreAbstract: We use molecular dynamics simulations (MD) to study piezoelectric properties of hexagonal boron nitride nanosheets (BNNS) and reveal how piezoelectric properties depend on size and shape. We first analyze how the macroscopic shape affects the full 2D structure symmetry and its piezoelectric tensor. In particular, we demonstrate that a hexagonal (rectangular)-shaped BNNS belongs to the hexagonal 6̄m2 (monoclinic m) point group. Our simulation results show that the piezoelectric constants of BNNS depend strongly on the macroscopic shape, in agreement with the symmetry of the structure, but are nearly independent of the macroscopic size. The present study provides a detailed understanding of the piezoelectric properties of finite size BNNS and guidance to future experiments and optimization of 2D piezoelectric materials in general. read less NOT USED (high confidence) M. Amsler et al., “FLAME: A library of atomistic modeling environments,” Comput. Phys. Commun. 2019. link Times cited: 19 NOT USED (high confidence) M. Vorholzer, J. Vilhena, R. Pérez, E. Gnecco, D. Dietzel, and A. Schirmeisen, “Temperature Activates Contact Aging in Silica Nanocontacts,” Physical Review X. 2019. link Times cited: 7 Abstract: Matthias Vorholzer, J. G. Vilhena, Ruben Perez, Enrico Gnecc… read moreAbstract: Matthias Vorholzer, J. G. Vilhena, Ruben Perez, Enrico Gnecco, Dirk Dietzel, and André Schirmeisen Institute of Applied Physics, Justus-Liebig-Universität Giessen, 35392 Giessen, Germany Department of Physics, University of Basel, Klingelbergstrasse 82, 4056 Basel, Switzerland Departamento de Física Teórica de la Materia Condensada, Universidad Autónoma de Madrid, E-28049 Madrid, Spain Condensed Matter Physics Center (IFIMAC), Universidad Autónoma de Madrid, E-28049 Madrid, Spain Otto Schott Institute of Materials Research, Friedrich Schiller University Jena, 07742 Jena, Germany Center for Materials Research, Justus-Liebig-Universität Giessen, 35392 Giessen, Germany read less NOT USED (high confidence) Q. Wang, M. Wu, C. Zhang, Y. Lv, and X. Ji, “Effect of Machining-Induced Subsurface Defects on Dislocation Evolution and Mechanical Properties of Materials via Nano-indentation,” Nanoscale Research Letters. 2019. link Times cited: 8 NOT USED (high confidence) F. W. Fernandes, “HICOLM: High-Performance Platform of Physical Simulations by Using Low Computational Cost Methods,” RITA. 2019. link Times cited: 0 Abstract: For decades, computational simulation models have been used … read moreAbstract: For decades, computational simulation models have been used by scientists in search for new materials with technological applications in several areas of knowledge. For this, software based on several theoretical-computational models were developed in order to obtain an analysis of the physical properties at atomic levels. The objective of this work is proposing a widely functional software to analyze the physical properties of nanostructures based on carbon and condensed systems using theories of low computational cost. Therefore, a Fortran language computational program called HICOLM was developed, whose theoretical bases are based on two commonly known models (Tight-binding and Molecular Dynamics). The physical properties of condensed systems can be obtained in the thermodynamic equilibrium in several statistical ensembles, and possible to obtain an analysis of the properties of the material and its evolution in the time-dependent on its thermodynamic conditions like temperature and pressure. Moreover, from the tight-binding model, the HICOLM program is also capable of performing a physical analysis of carbon-based nanostructures from the calculation of the material band structure. read less NOT USED (high confidence) A. Sarikov, A. Marzegalli, L. Barbisan, E. Scalise, F. Montalenti, and L. Miglio, “Molecular dynamics simulations of extended defects and their evolution in 3C–SiC by different potentials,” Modelling and Simulation in Materials Science and Engineering. 2019. link Times cited: 11 Abstract: An important issue in the technology of cubic SiC (3C–SiC) m… read moreAbstract: An important issue in the technology of cubic SiC (3C–SiC) material for electronic device applications is to understand the behavior of extended defects such as partial dislocation complexes and stacking faults (SFs). Atomistic simulations using molecular dynamics (MD) are an efficient tool to tackle this issue for large systems at comparatively low computation cost. At this, proper choice of MD potential is imperative to ensure the reliability of the simulation predictions. In this work, we compare the evolution of extended defects in 3C–SiC obtained by MD simulations with Tersoff, analytical bond order, and Vashishta potentials. Key aspects of this evolution are considered including the dissociation of 60° perfect dislocations in pairs of 30° and 90° partials as well as the dependence of the partial dislocation velocity on the Burgers vector and the atomic composition of core. Tersoff potential has been found to be less appropriate in describing the dislocation behavior in 3C–SiC as compared to two other potentials, which in their turn provide qualitatively equivalent predictions. The Vashishta potential predicts much faster defect dynamics than the analytical bond order potential (ABOP). It can be applied therefore to describe the large-scale evolution of the dislocation systems and SFs. On the other hand, ABOP is more precise in predicting local atom arrangements and reconstructions of the dislocation core structures. In this respect, synergetic use of ABOP and Vashishta potential is suggested for the MD simulation study of the properties and evolution of extended defects in the 3C–SiC. read less NOT USED (high confidence) T. Wen et al., “Development of a deep machine learning interatomic potential for metalloid-containing Pd-Si compounds,” Physical Review B. 2019. link Times cited: 30 Abstract: Interatomic potentials based on neural-network machine learn… read moreAbstract: Interatomic potentials based on neural-network machine learning (ML) approach to address the longstanding challenge of accuracy versus efficiency in molecular-dynamics simulations have recently attracted a great deal of interest. Here, utilizing Pd-Si system as a prototype, we extend the development of neural-network ML potentials to compounds exhibiting various types of bonding characteristics. The ML potential is trained by fitting to the energies and forces of both liquid and crystal structures firstprinciples calculations based on density-functional theory (DFT). We show that the generated ML potential captures the structural features and motifs in Pd82Si18 and Pd75Si25 liquids more accurately than the existing interatomic potential based on embedded-atom method (EAM). The ML potential also describes the solid-liquid interface of these systems very well. Moreover, while the existing EAM potential fails to describe the relative energies of various crystalline structures and predict wrong ground-state structures at Pd3Si and Pd9Si2 composition, the developed ML potential predicts correctly the groundstate structures from genetic algorithm search. The efficient ML potential with DFT accuracy from our study will provide a promising scheme for accurate atomistic simulations of structures and dynamics of complex Pd-Si system. Disciplines Condensed Matter Physics Authors Tongqi Wen, Cai-Zhuang Wang, Matthew J. Kramer, Yang Sun, Beilin Ye, Haidi Wang, Xueyuan Liu, Chao Zhang, Feng Zhang, Kai-Ming Ho, and Nan Wang This article is available at Iowa State University Digital Repository: https://lib.dr.iastate.edu/ameslab_manuscripts/ 663 PHYSICAL REVIEW B 100, 174101 (2019) Development of a deep machine learning interatomic potential for metalloid-containing Pd-Si compounds Tongqi Wen ,1,2 Cai-Zhuang Wang,2,3,* M. J. Kramer ,2 Yang Sun ,2 Beilin Ye,4 Haidi Wang,2 Xueyuan Liu,2 Chao Zhang ,2,5 Feng Zhang,2 Kai-Ming Ho,2,3 and Nan Wang 1,† 1MOE Key Laboratory of Materials Physics and Chemistry under Extraordinary Conditions, School of Natural and Applied Sciences, Northwestern Polytechnical University, Xi’an 710072, China 2Ames Laboratory-USDOE, Iowa State University, Ames, Iowa 50011, USA 3Department of Physics and Astronomy, Iowa State University, Ames, Iowa 50011, USA 4School of Materials Science and Engineering, South China University of Technology, Guangzhou 510641, China 5Department of Physics, School of Opto-electronic Information Science and Technology, Yantai University, Yantai, 264005, China (Received 16 July 2019; revised manuscript received 8 October 2019; published 4 November 2019) Interatomic potentials based on neural-network machine learning (ML) approach to address the long-standing challenge of accuracy versus efficiency in molecular-dynamics simulations have recently attracted a great deal of interest. Here, utilizing Pd-Si system as a prototype, we extend the development of neural-network ML potentials to compounds exhibiting various types of bonding characteristics. The ML potential is trained by fitting to the energies and forces of both liquid and crystal structures first-principles calculations based on density-functional theory (DFT). We show that the generated ML potential captures the structural features and motifs in Pd82Si18 and Pd75Si25 liquids more accurately than the existing interatomic potential based on embedded-atom method (EAM). The ML potential also describes the solid-liquid interface of these systems very well. Moreover, while the existing EAM potential fails to describe the relative energies of various crystalline structures and predict wrong ground-state structures at Pd3Si and Pd9Si2 composition, the developed ML potential predicts correctly the ground-state structures from genetic algorithm search. The efficient ML potential with DFT accuracy from our study will provide a promising scheme for accurate atomistic simulations of structures and dynamics of complex Pd-Si system. DOI: 10.1103/PhysRevB.100.174101 read less NOT USED (high confidence) A. Galashev, K. Ivanichkina, K. Katin, and M. Maslov, “Computational Study of Lithium Intercalation in Silicene Channels on a Carbon Substrate after Nuclear Transmutation Doping,” Comput. 2019. link Times cited: 10 Abstract: Silicene is considered to be the most promising anode materi… read moreAbstract: Silicene is considered to be the most promising anode material for lithium-ion batteries. In this work, we show that transmutation doping makes silicene substantially more suitable for use as an anode material. Pristine and modified bilayer silicene was simulated on a graphite substrate using the classical molecular dynamics method. The parameters of Morse potentials for alloying elements were determined using quantum mechanical calculations. The main advantage of modified silicene is its low deformability during lithium intercalation and its possibility of obtaining a significantly higher battery charge capacity. Horizontal and vertical profiles of the density of lithium as well as distributions of the most significant stresses in the walls of the channels were calculated both in undoped and doped systems with different gaps in silicene channels. The energies of lithium adsorption on silicene, including phosphorus-doped silicene, were determined. High values of the self-diffusion coefficient of lithium atoms in the silicene channels were obtained, which ensured a high cycling rate. The calculations showed that such doping increased the normal stress on the walls of the channel filled with lithium to 67% but did not provoke a loss of mechanical strength. In addition, doping achieved a greater battery capacity and higher charging/discharging rates. read less NOT USED (high confidence) Z. Zhu, B. Peng, R. Feng, L. Wang, S. Jiao, and Y. Dong, “Molecular dynamics simulation of chip formation mechanism in single-crystal nickel nanomachining,” Science China Technological Sciences. 2019. link Times cited: 10 NOT USED (high confidence) W. He, C. Chen, and Z. Xu, “Molecular dynamics simulations of silicon carbide nanowires under single-ion irradiation,” Journal of Applied Physics. 2019. link Times cited: 2 Abstract: Understanding irradiation effects is crucial for risk manage… read moreAbstract: Understanding irradiation effects is crucial for risk management in space science as well as technological development in material processing, imaging, and radiotherapy. The single-particle event is a stepping stone to this complicate, multiscale problem, which finds relevance in low-dose irradiation where long-term effects are usually concerned. Using molecular dynamics simulations, we explore the responses of crystalline silicon carbide nanowires under single-Ga-ion irradiation. It turns out that the channeling mode is more probable compared to focusing for crystalline surfaces at a normal angle of incidence. We find that the surface of nanowires plays a dual role as sites for both defect nucleation and annihilation, leading to notable diameter-dependent responses to the irradiation. The defects created in a single-ion event are localized within a few nanometers, and there exists a critical diameter for nanowires to be minimally damaged. These results allow quantitative assessment of the irradiation damage of nanostructures and guide their design for irradiation-resistant applications.Understanding irradiation effects is crucial for risk management in space science as well as technological development in material processing, imaging, and radiotherapy. The single-particle event is a stepping stone to this complicate, multiscale problem, which finds relevance in low-dose irradiation where long-term effects are usually concerned. Using molecular dynamics simulations, we explore the responses of crystalline silicon carbide nanowires under single-Ga-ion irradiation. It turns out that the channeling mode is more probable compared to focusing for crystalline surfaces at a normal angle of incidence. We find that the surface of nanowires plays a dual role as sites for both defect nucleation and annihilation, leading to notable diameter-dependent responses to the irradiation. The defects created in a single-ion event are localized within a few nanometers, and there exists a critical diameter for nanowires to be minimally damaged. These results allow quantitative assessment of the irradiation dam... read less NOT USED (high confidence) R. Mukuno and M. Ishimaru, “Application of the Tersoff interatomic potential to pressure-induced polyamorphism of silicon,” Japanese Journal of Applied Physics. 2019. link Times cited: 1 Abstract: Molecular-dynamics simulations of the pressure-induced struc… read moreAbstract: Molecular-dynamics simulations of the pressure-induced structural changes of amorphous Si have been performed using the Tersoff interatomic potential to examine the validity of this potential. Amorphous Si with a tetrahedral network was prepared by melt-quenching methods, and it was then compressed under isothermal–isobaric conditions. The changes of the atomic pair-distribution functions and static structure factors with increasing pressure were in agreement with those observed experimentally. The pressure-induced amorphous structures contained a short-range order similar to the β-tin and Imma structures. These results suggest that the Tersoff potential is suitable for describing the structural changes of amorphous Si under high pressure. read less NOT USED (high confidence) Z. Fan, Y. Wang, X. Gu, P. Qian, Y. Su, and T. Ala‐Nissila, “A minimal Tersoff potential for diamond silicon with improved descriptions of elastic and phonon transport properties,” Journal of Physics: Condensed Matter. 2019. link Times cited: 10 Abstract: Silicon is an important material and many empirical interato… read moreAbstract: Silicon is an important material and many empirical interatomic potentials have been developed for atomistic simulations of it. Among them, the Tersoff potential and its variants are the most popular ones. However, all the existing Tersoff-like potentials fail to reproduce the experimentally measured thermal conductivity of diamond silicon. Here we propose a modified Tersoff potential and develop an efficient open source code called GPUGA (graphics processing units genetic algorithm) based on the genetic algorithm and use it to fit the potential parameters against energy, virial and force data from quantum density functional theory calculations. This potential, which is implemented in the efficient open source GPUMD (graphics processing units molecular dynamics) code, gives significantly improved descriptions of the thermal conductivity and phonon dispersion of diamond silicon as compared to previous Tersoff potentials and at the same time well reproduces the elastic constants. Furthermore, we find that quantum effects on the thermal conductivity of diamond silicon at room temperature are non-negligible but small: using classical statistics underestimates the thermal conductivity by about 10% as compared to using quantum statistics. read less NOT USED (high confidence) M. Wen and E. Tadmor, “Hybrid neural network potential for multilayer graphene,” Physical Review B. 2019. link Times cited: 40 Abstract: Monolayer and multilayer graphene are promising materials fo… read moreAbstract: Monolayer and multilayer graphene are promising materials for applications such as electronic devices, sensors, energy generation and storage, and medicine. In order to perform large-scale atomistic simulations of the mechanical and thermal behavior of graphene-based devices, accurate interatomic potentials are required. Here, we present a new interatomic potential for multilayer graphene structures referred to as "hNN--Gr$_x$." This hybrid potential employs a neural network to describe short-range interactions and a theoretically-motivated analytical term to model long-range dispersion. The potential is trained against a large dataset of monolayer graphene, bilayer graphene, and graphite configurations obtained from ab initio total-energy calculations based on density functional theory (DFT). The potential provides accurate energy and forces for both intralayer and interlayer interactions, correctly reproducing DFT results for structural, energetic, and elastic properties such as the equilibrium layer spacing, interlayer binding energy, elastic moduli, and phonon dispersions to which it was not fit. The potential is used to study the effect of vacancies on thermal conductivity in monolayer graphene and interlayer friction in bilayer graphene. The potential is available through the OpenKIM interatomic potential repository at \url{this https URL}. read less NOT USED (high confidence) H. Wang, J. Guilleminot, and C. Soize, “Modeling uncertainties in molecular dynamics simulations using a stochastic reduced-order basis,” Computer Methods in Applied Mechanics and Engineering. 2019. link Times cited: 14 NOT USED (high confidence) A. Giri and P. Hopkins, “A Review of Experimental and Computational Advances in Thermal Boundary Conductance and Nanoscale Thermal Transport across Solid Interfaces,” Advanced Functional Materials. 2019. link Times cited: 144 Abstract: Interfacial thermal resistance is the primary impediment to … read moreAbstract: Interfacial thermal resistance is the primary impediment to heat flow in materials and devices as characteristic lengths become comparable to the mean‐free paths of the energy carriers. This thermal boundary conductance across solid interfaces at the nanoscale can affect a plethora of applications. The recent experimental and computational advances that have led to significant atomistic insights into the nanoscopic thermal transport mechanisms at interfaces between various types of materials are summarized. The authors focus on discussions of works that have pushed the limits to interfacial heat transfer and drastically increased the understanding of thermal boundary conductance on the atomic and nanometer scales near solid/solid interfaces. Specifically, the role of localized interfacial modes on the energy conversion processes occurring at interfaces is emphasized in this review. The authors also focus on experiments and computational works that have challenged the traditionally used phonon gas models in interpreting the physical mechanisms driving interfacial energy transport. Finally, the authors discuss the future directions and avenues of research that can further the knowledge of heat transfer across systems with broken symmetries. read less NOT USED (high confidence) A. Mokhalingam, R. Ghaffari, R. Sauer, and S. S. Gupta, “Comparing quantum, molecular and continuum models for graphene at large deformations,” Carbon. 2019. link Times cited: 11 NOT USED (high confidence) E. Zhang, Y.-H. Yao, T. Gao, D. Kang, J. Wu, and J. Dai, “The effect of external temperature gradients on thermal conductivity in non-equilibrium molecular dynamics simulations: From nanowires to bulk Si,” The Journal of Chemical Physics. 2019. link Times cited: 6 Abstract: Nonequilibrium molecular dynamics is widely used to calculat… read moreAbstract: Nonequilibrium molecular dynamics is widely used to calculate the thermal conductivity of various materials, but the influence of temperature gradient to thermal conductivity has received limited attention within current research studies. The purpose of this article is to explore the discrepancy between intrinsic and extrinsic thermal conductivities under different temperature gradients, which can be considered as external fields. The analyses of phonon density of states have shown that the temperature gradient plays a role in the external field, and a larger temperature gradient activates more low-frequency vibrational modes, which leads to larger thermal conductivities. Specially, the thermal conductivity increases linearly with the temperature gradient when using Stillinger-Weber (SW) potential. Moreover, a new formula was derived to satisfactorily fit the thermal conductivities of bulk Si and silicon nanowires (SiNWs) for various cell sizes, and the physical meaning of the formula was explained. It is shown that the SW potential and Tersoff potential of Si produce different thermal conductivities. By comparing the results of first principles simulations, the Tersoff potential gives rise to better description of vibrational modes. read less NOT USED (high confidence) A. Cupo, D. Tristant, K. Rego, and V. Meunier, “Theoretical analysis of spectral lineshapes from molecular dynamics,” npj Computational Materials. 2019. link Times cited: 6 NOT USED (high confidence) R. Li, K. Gordiz, A. Henry, P. Hopkins, E. Lee, and T. Luo, “Effect of light atoms on thermal transport across solid-solid interfaces.,” Physical chemistry chemical physics : PCCP. 2019. link Times cited: 12 Abstract: Thermal transport across solid interfaces is of great import… read moreAbstract: Thermal transport across solid interfaces is of great importance for applications like power electronics. In this work, we perform non-equilibrium molecular dynamics simulations to study the effect of light atoms on the thermal transport across SiC/GaN interfaces, where light atoms refer to substitutional or interstitial defect atoms lighter than those in the pristine lattice. Various light atom doping features, such as the light atom concentration, mass of the light atom, and skin depth of the doped region, have been investigated. It is found that substituting Ga atoms in the GaN lattice with lighter atoms (e.g. boron atoms) with 50% concentration near the interface can increase the thermal boundary conductance (TBC) by up to 50%. If light atoms are introduced interstitially, a similar increase in TBC is observed. Spectral analysis of interfacial heat transfer reveals that the enhanced TBC can be attributed to the stronger coupling of mid- and high-frequency phonons after introducing light atoms. We have also further included quantum correction, which reduces the amount of enhancement, but it still exists. These results may provide a route to improve TBC across solid interfaces as light atoms can be introduced during material growth. read less NOT USED (high confidence) Z. Chen, Y. Cao, W. Tian, and Y. Wang, “Surface roughness analysis of Cu films deposited on Si substrates: A molecular dynamic analysis,” Journal of Applied Physics. 2019. link Times cited: 4 Abstract: Cu is a promising material to replace Al and Au in integrate… read moreAbstract: Cu is a promising material to replace Al and Au in integrated circuits and microscale devices because of its low electrical resistivity, high electromigration resistance, and low cost. However, surface roughness affects the contact resistance of these devices, especially when the device is on a microscale or nanoscale. This paper focuses on surface roughness analysis of Cu films deposited on Si substrates by molecular dynamic simulation based on the mechanism of physical vapor deposition. The effects of film thickness, deposition temperature, deposition interval, and reflow temperature on the surface roughness of Cu films are studied in detail. The simulation results show that the surface roughness can be improved by appropriate adjustments of these parameters. They also provide a foundation for further work on the deposition of Cu films on Si substrates.Cu is a promising material to replace Al and Au in integrated circuits and microscale devices because of its low electrical resistivity, high electromigration resistance, and low cost. However, surface roughness affects the contact resistance of these devices, especially when the device is on a microscale or nanoscale. This paper focuses on surface roughness analysis of Cu films deposited on Si substrates by molecular dynamic simulation based on the mechanism of physical vapor deposition. The effects of film thickness, deposition temperature, deposition interval, and reflow temperature on the surface roughness of Cu films are studied in detail. The simulation results show that the surface roughness can be improved by appropriate adjustments of these parameters. They also provide a foundation for further work on the deposition of Cu films on Si substrates. read less NOT USED (high confidence) Q. Wang, C. Zhang, M. Wu, and J. Chen, “Effect of Fluid Media on Material Removal and Subsurface Defects Evolution of Monocrystal Copper in Nano-Cutting Process,” Nanoscale Research Letters. 2019. link Times cited: 12 NOT USED (high confidence) R. Jana, D. Savio, V. L. Deringer, and L. Pastewka, “Structural and elastic properties of amorphous carbon from simulated quenching at low rates,” Modelling and Simulation in Materials Science and Engineering. 2019. link Times cited: 22 Abstract: We generate representative structural models of amorphous ca… read moreAbstract: We generate representative structural models of amorphous carbon (a-C) from constant-volume quenching from the liquid with subsequent relaxation of internal stresses in molecular dynamics simulations using empirical and machine-learning interatomic potentials. By varying volume and quench rate we generate structures with a range of density and amorphous morphologies. We find that all a-C samples show a universal relationship between hybridization, bulk modulus and density despite having distinctly different cohesive energies. Differences in cohesive energy are traced back to slight changes in the distribution of bond-angles that is likely linked to thermal stability of these structures. read less NOT USED (high confidence) M. N. Esfahani and B. E. Alaca, “A Review on Size‐Dependent Mechanical Properties of Nanowires,” Advanced Engineering Materials. 2019. link Times cited: 52 Abstract: The primary challenge to exploit the nanowire as a truly one… read moreAbstract: The primary challenge to exploit the nanowire as a truly one‐dimensional building block in nanoscale devices is the clear incorporation of scale effects into the operational performance. Size‐dependent behavior in physical properties of nanowires is the subject of intense experimental and computational studies for more than two decades. In this review, the measurement techniques and computational approaches to study scale effects on mechanical properties of nanowires are reviewed for fcc metallic, silicon, and zinc oxide structures. Advantages and disadvantages of each measurement tool are summarized with data reported in the literature. A similar comparison is carried out for computational techniques. Contradictions in the literature are highlighted with an assessment of research needs and opportunities, among which the plastic behavior of gold nanowires and elastic properties of silicon nanowires can be primarily mentioned. Furthermore, challenges associated with the coupling of measurement methods and modeling approaches are summarized. Finally, points of agreement between experimental measurements and computational studies are discussed paving the way for the utilization of nanowires in future nanoscale devices. read less NOT USED (high confidence) B. Sharma and A. Parashar, “Atomistic simulations to study the effect of grain boundaries and hydrogen functionalization on the fracture toughness of bi-crystalline h-BN nanosheets.,” Physical chemistry chemical physics : PCCP. 2019. link Times cited: 17 Abstract: The aim of this research article was to investigate the effe… read moreAbstract: The aim of this research article was to investigate the effect of grain boundaries (GBs), and hydrogen functionalisation on the fracture toughness of bi-crystalline hexagonal boron nitride (h-BN) nanosheets. Molecular dynamics based simulations were performed in conjunction with the reactive force field to study the crack tip behaviour in single and bi-crystalline h-BN nanosheets. Atomistic simulations help in predicting a positive effect of the GB plane in the near vicinity of the crack tip. The density of 5|7 dislocation pairs significantly affects the fracture behaviour of bi-crystalline h-BN nanosheets. Additionally, the distance of the GB plane from the crack tip, and limited hydrogen functionalisation of GB atoms, further help in improving the fracture toughness of bi-crystalline h-BN nanosheets. Hydrogen functionalisation helps in inducing out of plane displacement at the GB plane, which helps in arresting or retarding the crack propagation. It can be concluded from the results that instead of deteriorating, geometrical defects such as GBs can also be used to tailor the fracture toughness of h-BN nanosheets. This study on the fracture toughness of bi-crystalline h-BN nanosheets helps in complementing the research on using porous h-BN nanosheets as nanomembranes for water desalination and ion separation. read less NOT USED (high confidence) V. Vijayaraghavan and L. Zhang, “Tensile and Interfacial Loading Characteristics of Boron Nitride-Carbon Nanosheet Reinforced Polymer Nanocomposites,” Polymers. 2019. link Times cited: 15 Abstract: The discovery of hybrid boron nitride–carbon (BN–C) nanostru… read moreAbstract: The discovery of hybrid boron nitride–carbon (BN–C) nanostructures has triggered enormous research interest in the design and fabrication of new generation nanocomposites. The robust design of these nanocomposites for target applications requires their mechanical strength to be characterized with a wide range of factors. This article presents a comprehensive study, with the aid of molecular dynamics analysis, of the tensile loading mechanics of BN–C nanosheet reinforced polyethylene (PE) nanocomposites. It is observed that the geometry and lattice arrangement of the BN–C nanosheet influences the tensile loading characteristics of the nanocomposites. Furthermore, defects in the nanosheet can severely impact the tensile loading resistance, the extent of which is determined by the defect’s location. This study also found that the tensile loading resistance of nanocomposites tends to weaken at elevated temperatures. The interfacial mechanics of the BN–C nanocomposites are also investigated. This analysis revealed a strong dependency with the carbon concentration in the BN–C nanosheet. read less NOT USED (high confidence) H. Dai, H. Du, J. Chen, and G. Chen, “Influence of elliptical vibration on the behavior of silicon during nanocutting,” The International Journal of Advanced Manufacturing Technology. 2019. link Times cited: 25 NOT USED (high confidence) Y. Xu, M. Wang, F. Zhu, X. Liu, Y. Liu, and L. He, “Study on subsurface damage of wafer silicon containing through silicon via in thinning,” The European Physical Journal Plus. 2019. link Times cited: 6 NOT USED (high confidence) H. C. Thielemann et al., “From GROMACS to LAMMPS: GRO2LAM,” Journal of Molecular Modeling. 2019. link Times cited: 22 NOT USED (high confidence) T. Zhong, J. Li, and K. Zhang, “A molecular dynamics study of Young’s modulus of multilayer graphene,” Journal of Applied Physics. 2019. link Times cited: 29 Abstract: In this letter, we adopt the molecular dynamics method to st… read moreAbstract: In this letter, we adopt the molecular dynamics method to study Young’s modulus of 1–19 layers graphene by the nanoindentation theory and the tensile theory. The results show that the number of layers has a strong influence on Young’s modulus using the nanoindentation theory, while Young’s modulus from the tensile theory is not sensitive to the number of layers. Furthermore, we analyze the structure of multilayer graphene (MLG), the loading force-layer number curves, and the breaking force of 1–19 layers graphene based on the nanoindentation theory. The results reveal that MLG transforms into bulk graphite with an increase in the number of layers, which indicates that the nanoindentation theory has reached a limitation. Moreover, we simulate the nanoindentation for circular membranes of different radii and determine the threshold layer of the nanoindentation theory. Our study plays an important role in deepening the understanding of the mechanical properties of MLG and developing the nanoindentation and tensile theories.In this letter, we adopt the molecular dynamics method to study Young’s modulus of 1–19 layers graphene by the nanoindentation theory and the tensile theory. The results show that the number of layers has a strong influence on Young’s modulus using the nanoindentation theory, while Young’s modulus from the tensile theory is not sensitive to the number of layers. Furthermore, we analyze the structure of multilayer graphene (MLG), the loading force-layer number curves, and the breaking force of 1–19 layers graphene based on the nanoindentation theory. The results reveal that MLG transforms into bulk graphite with an increase in the number of layers, which indicates that the nanoindentation theory has reached a limitation. Moreover, we simulate the nanoindentation for circular membranes of different radii and determine the threshold layer of the nanoindentation theory. Our study plays an important role in deepening the understanding of the mechanical properties of MLG and developing the nanoindentation and t... read less NOT USED (high confidence) A. Akbarshahi, A. Rajabpour, M. Ghadiri, and M. M. Barooti, “Influence of various setting angles on vibration behavior of rotating graphene sheet: continuum modeling and molecular dynamics simulation,” Journal of Molecular Modeling. 2019. link Times cited: 9 NOT USED (high confidence) V. Kuryliuk, O. Nepochatyi, P. Chantrenne, D. Lacroix, and M. Isaiev, “Thermal conductivity of strained silicon: Molecular dynamics insight and kinetic theory approach,” Journal of Applied Physics. 2019. link Times cited: 15 Abstract: In this work, we investigated tensile and compression forces… read moreAbstract: In this work, we investigated tensile and compression forces effect on the thermal conductivity of silicon. We used equilibrium molecular dynamics approach for the evaluation of thermal conductivity considering different interatomic potentials. More specifically, we tested Stillinger-Weber, Tersoff, Environment-Dependent Interatomic Potential and Modified Embedded Atom Method potentials for the description of silicon atom motion under different strain and temperature conditions. Additionally, we extracted phonon density of states and dispersion curves from molecular dynamics simulations. These data were used for direct calculations of thermal conductivity considering the kinetic theory approach. Comparison of molecular dynamics and kinetic theory simulations results as a function of strain and temperature allowed us to investigate the different factors affecting the thermal conductivity of strained silicon. read less NOT USED (high confidence) J. Luo, A. Alateeqi, L. Liu, and T. Sinno, “Carbon solubility in liquid silicon: A computational analysis across empirical potentials.,” The Journal of chemical physics. 2019. link Times cited: 4 Abstract: The nucleation and growth of SiC precipitates in liquid sili… read moreAbstract: The nucleation and growth of SiC precipitates in liquid silicon is important in the crystallization of silicon used for the photovoltaic industry. These processes depend strongly on the carbon concentration as well as the equilibrium solubility relative to the precipitate phase. Here, using a suite of statistical thermodynamic techniques, we calculate the solubility of carbon atoms in liquid silicon relative to the β-SiC phase. We employ several available empirical potentials to assess whether these potentials may reasonably be used to computationally analyze SiC precipitation. We find that some of the Tersoff-type potentials provide an excellent picture for carbon solubility in liquid silicon but, because of their severe silicon melting point overestimation, are limited to high temperatures where the carbon solubility is several percent, a value that is irrelevant for typical solidification conditions. Based on chemical potential calculations for pure silicon, we suggest that this well-known issue is confined to the description of the liquid phase and demonstrate that some recent potential models for silicon might address this weakness while preserving the excellent description of the carbon-silicon interaction found in the existing models. read less NOT USED (high confidence) M. Wang, S. You, F. Wang, and Q. Liu, “MD simulation of tool wear behaviour based on changes of tool rake and flank angle caused by diamond tool position adjustment,” Molecular Simulation. 2019. link Times cited: 4 Abstract: ABSTRACT A new method for adjusting the tool rake and flank … read moreAbstract: ABSTRACT A new method for adjusting the tool rake and flank angles by changing the position of the tools was used to explore the behaviour of wear using MD simulation. In this paper, a new improved tool was used and found to have lower wear compared to conventional tools. Simulations under the same cutting conditions were carried out using a tool swinging to six different rake angles of six different adjustment angles. Further analysis of the influence of different adjustment angles on the wear behaviour of the tool by cutting force, friction coefficient, temperature, radial distribution function and wear rate was conducted. The highest normal force was observed with the tool swung to −15°, and the tangential force did not produce any significant changes. The friction coefficients were also not observed as a linear change with the increasing angle of adjustment. At the same time, the particularities and differences at −15° were illustrated, from the most intuitive tool flank wear images. Finally, the causes of this phenomenon were further explained in terms of temperature and radial distribution function and the correctness of this phenomenon was proved, which is different from previous researches. read less NOT USED (high confidence) A. C. Hansen-Dorr, L. Wilkens, A. Croy, A. Dianat, G. Cuniberti, and M. Kastner, “Combined molecular dynamics and phase-field modelling of crack propagation in defective graphene,” Computational Materials Science. 2019. link Times cited: 14 NOT USED (high confidence) M. R. G. Marques, J. Wolff, C. Steigemann, and M. Marques, “Neural network force fields for simple metals and semiconductors: construction and application to the calculation of phonons and melting temperatures.,” Physical chemistry chemical physics : PCCP. 2019. link Times cited: 17 Abstract: We present a practical procedure to obtain reliable and unbi… read moreAbstract: We present a practical procedure to obtain reliable and unbiased neural network based force fields for solids. Training and test sets are efficiently generated from global structural prediction runs, at the same time assuring the structural variety and importance of sampling the relevant regions of phase space. The neural networks are trained to yield not only good formation energies, but also accurate forces and stresses, which are the quantities of interest for molecular dynamics simulations. Finally, we construct, as an example, several force fields for both semiconducting and metallic elements, and prove their accuracy for a variety of structural and dynamical properties. These are then used to study the melting of bulk copper and gold. read less NOT USED (high confidence) E. Kishor and N. Swaminathan, “A Molecular Dynamics Based Comparison of the Mechanical Properties of Three Polytypes of Cubic BC3,” Journal of Superhard Materials. 2019. link Times cited: 2 NOT USED (high confidence) M. Wang, S. You, F. Wang, and Q. Liu, “Effect of dynamic adjustment of diamond tools on nano-cutting behavior of single-crystal silicon,” Applied Physics A. 2019. link Times cited: 11 NOT USED (high confidence) J. Roth, E. Eisfeld, D. Klein, S. Hocker, H. Lipp, and H. Trebin, “IMD – the ITAP molecular dynamics simulation package,” The European Physical Journal Special Topics. 2019. link Times cited: 3 NOT USED (high confidence) H. Dai, H. Du, J. Chen, and G. Chen, “Influence of elliptical vibration on the behavior of silicon during nanocutting,” The International Journal of Advanced Manufacturing Technology. 2019. link Times cited: 0 NOT USED (high confidence) X. Zhuo and H. Beom, “Effect of Side Surface Orientation on the Mechanical Properties of Silicon Nanowires: A Molecular Dynamics Study,” Crystals. 2019. link Times cited: 8 Abstract: We investigated the mechanical properties of <100>-oriented … read moreAbstract: We investigated the mechanical properties of <100>-oriented square cross-sectional silicon nanowires under tension and compression, with a focus on the effect of side surface orientation. Two types of silicon nanowires (i.e., nanowires with four {100} side surfaces and those with four {110} side surfaces) were simulated by molecular dynamics simulations at a temperature of 300 K. The deformation mechanism exhibited no dependence on the side surface orientation, while the tensile strength and compressive strength did. Brittle cleavage was observed under tension, whereas dislocation nucleation was witnessed under compression. Silicon nanowires with {100} side surfaces had a lower tensile strength but higher compressive strength. The effect of side surface orientation became stronger as the nanowire width decreased. The obtained results may provide some insight into the design of silicon-based nano-devices. read less NOT USED (high confidence) S. Karewar, J. Sietsma, and M. Santofimia, “Effect of C on the Martensitic Transformation in Fe-C Alloys in the Presence of Pre-Existing Defects: A Molecular Dynamics Study,” Crystals. 2019. link Times cited: 19 Abstract: Molecular dynamics simulations are used to investigate the a… read moreAbstract: Molecular dynamics simulations are used to investigate the atomic effects of carbon (C) addition in Fe on the martensitic phase transformation in the presence of pre-existing defects such as stacking faults and twin boundaries. The pre-existing defect structures in Fe-C alloys have the same effect on the atomistic mechanisms of martensitic transformation as in pure Fe. However, C addition decreases the martensitic transformation temperature. This effect is captured by characterizing three parameters at the atomic level: atomic shear stresses, atomic energy, and total energy as a function of temperature for face-centered-cubic (fcc) and body-centered-cubic (bcc) phases. The thermodynamic effect of fcc phase stabilization by C addition is revealed by the atomic energy at a particular temperature and total energy as a function of temperature. The barrier for fcc-to-bcc transformation is revealed by analysis of atomic shear stresses. The analysis indicates that addition of C increases the atomic shear stresses for atomic displacements during martensitic transformation, which in turn decreases the martensitic transformation temperature. read less NOT USED (high confidence) M. Wang, S. You, F. Wang, and Q. Liu, “Effect of dynamic adjustment of diamond tools on nano-cutting behavior of single-crystal silicon,” Applied Physics A. 2019. link Times cited: 0 NOT USED (high confidence) S. Chavoshi and S. Xu, “Nanoindentation/scratching at finite temperatures: Insights from atomistic-based modeling,” Progress in Materials Science. 2019. link Times cited: 37 NOT USED (high confidence) A. Galashev and K. Ivanichkina, “Numerical Simulation of the Structure and Mechanical Properties of Silicene Layers on Graphite during the Lithium Ion Motion,” Physics of the Solid State. 2019. link Times cited: 9 NOT USED (high confidence) H. Almisbahi, “Analysing graphene vibrations via molecular dynamics simulations and dimension reduction techniques.” 2019. link Times cited: 0 Abstract: Graphene was first isolated in the lab in 2003 and this work… read moreAbstract: Graphene was first isolated in the lab in 2003 and this work was first published in 2004 by a research team at The University of Manchester. Since that date, graphene research has exploded due to its special properties. Phonons and molecular dynamic simulation provide valuable tools to study the molecular systems under different structure forms. They are helpful to study graphene ribbons and defects. On the other hand, many machine learning techniques were extensively used to analyse the enormous amounts of data resulted from the molecular simulations.
As such, this thesis aimed to use one of the machine learning techniques to study phonons of graphene with single vacancy defect and graphene armchair nanoribbons. PCA can be used to transform the atomic velocities into orthogonal eigenvectors such that each eigenvector represents one of the phonon modes of graphene. This is helpful to visualize the atomic motion of a specific phonon mode. To provide orthogonal eigenvectors, PCA needs the data to be of gaussian distribution. The atomic velocities resulted from the molecular simulations follow gaussian distribution at the equilibrium state. Hence, the assumption of gaussian distribution needed by PCA is achieved. However, only some of the phonon modes can be calculated from the atomic velocities in their real space. Most of the phonon modes are calculated after transforming the atomic velocities to a reciprocal space (k space) using spatial Fourier transform. The k space atomic velocities are not following gaussian distribution. This thesis introduced a novel method to use PCA to isolate and visualize the phonon modes extracted from the k space velocities.
To prove the feasibility of using PCA to isolate k space phonons, we conducted classical molecular simulations of graphene with different structures. The effect of single vacancy defect on graphene phonons was studied in comparison to the perfect graphene. In addition, the effect of the armchair ribbon width on graphene phonon modes was investigated.
The results of the conducted molecular simulations were used with PCA to visualize some of the phonon modes of pristine graphene and armchair nanoribbons of graphene. We used PCA to present the evolution of the atomic motion of specific k space phonon modes of armchair ribbons: the first overtone of TA phonon mode and the highest overtone of TO phonon mode. The presented motions showed that the breathing like mode is a transition state between two opposite atomic motions of TA mode.
In the method we introduced using PCA, we used the eigenvectors with the lowest eigenvalues to study the Fourier transformed atomic velocities. This method rotated the k space atomic velocities into the eigenvectors with the lowest eigenvalues which helped to isolate and visualize the k space phonon modes. read less NOT USED (high confidence) M. Ceriotti, M. J. Willatt, and G. Csányi, “Machine Learning of Atomic-Scale Properties Based on Physical Principles,” Handbook of Materials Modeling. 2019. link Times cited: 30 NOT USED (high confidence) Y. Lysogorskiy, T. Hammerschmidt, J. Janssen, J. Neugebauer, and R. Drautz, “Transferability of interatomic potentials for molybdenum and silicon,” Modelling and Simulation in Materials Science and Engineering. 2019. link Times cited: 14 Abstract: Interatomic potentials are widely used in computational mate… read moreAbstract: Interatomic potentials are widely used in computational materials science, in particular for simulations that are too computationally expensive for density functional theory (DFT). Most interatomic potentials have a limited application range and often there is very limited information available regarding their performance for specific simulations. We carried out high-throughput calculations for molybdenum and silicon with DFT and a number of interatomic potentials. We compare the DFT reference calculations and experimental data to the predictions of the interatomic potentials. We focus on a large number of basic materials properties, including the cohesive energy, atomic volume, elastic coefficients, vibrational properties, thermodynamic properties, surface energies and vacancy formation energies, which enables a detailed discussion of the performance of the different potentials. We further analyze correlations between properties as obtained from DFT calculations and how interatomic potentials reproduce these correlations, and suggest a general measure for quantifying the accuracy and transferability of an interatomic potential. From our analysis we do not establish a clearcut ranking of the potentials as each potential has its strengths and weaknesses. It is therefore essential to assess the properties of a potential carefully before application of the potential in a specific simulation. The data presented here will be useful for selecting a potential for simulations of Mo or Si. read less NOT USED (high confidence) W. Jian, X. Yao, Y. Sun, Z. Xie, and X. Zhang, “Size-dependent vibration analysis of carbon nanotubes,” Journal of Materials Research. 2019. link Times cited: 1 Abstract: Considering the nonlocal small-scale effect and surface effe… read moreAbstract: Considering the nonlocal small-scale effect and surface effect, we perform the size-dependent vibration analysis of carbon nanotube (CNT). The modified governing equations for CNT’s vibration behaviors are derived by using the nonlocal Euler–Bernoulli and Timoshenko beam models, together with the consideration of surface tension and surface elasticity. According to the numerical experiments, both small-scale effect and surface effect make a substantial difference. For flexural vibration, size effect for CNT’s vibration behaviors weakens with the increase of its diameter, but strengthens with the increase of the length–diameter ratio; for shear vibration with constant length–diameter ratio, a nonlinear correlation between size effect and CNT’s diameter exists, suggesting that there is a typical diameter for CNTs, which corresponds to the “strongest” size effect. In addition, the effects of elastic substrate modulus, temperature change, and axial preloading on the vibration behaviors and their size-dependence are analyzed, respectively. read less NOT USED (high confidence) J. Yeo, G. Jung, F. J. Martín-Martínez, J. Beem, Z. Qin, and M. Buehler, “Multiscale Design of Graphyne‐Based Materials for High‐Performance Separation Membranes,” Advanced Materials. 2019. link Times cited: 29 Abstract: By varying the number of acetylenic linkages connecting arom… read moreAbstract: By varying the number of acetylenic linkages connecting aromatic rings, a new family of atomically thin graph‐n‐yne materials can be designed and synthesized. Generating immense scientific interest due to its structural diversity and excellent physical properties, graph‐n‐yne has opened new avenues toward numerous promising engineering applications, especially for separation membranes with precise pore sizes. Having these tunable pore sizes in combination with their excellent mechanical strength to withstand high pressures, free‐standing graph‐n‐yne is theoretically posited to be an outstanding membrane material for separating or purifying mixtures of either gases or liquids, rivaling or even dramatically exceeding the capabilities of current, state‐of‐art separation membranes. Computational modeling and simulations play an integral role in the bottom‐up design and characterization of these graph‐n‐yne materials. Thus, here, the state of the art in modeling α‐, β‐, γ‐, δ‐, and 6,6,12‐graphyne nanosheets for synthesizing graph‐2‐yne materials and 3D architectures thereof is discussed. Different synthesis methods are described and a broad overview of computational characterizations of graph‐n‐yne's electrical, chemical, and thermal properties is provided. Furthermore, a series of in‐depth computational studies that delve into the specifics of graph‐n‐yne's mechanical strength and porosity, which confer superior performance for separation and desalination membranes, are reviewed. read less NOT USED (high confidence) L. Banerjee, A. Sengupta, and H. Rahaman, “Carrier Transport and Thermoelectric Properties of Differently Shaped Germanene (Ge) and Silicene (Si) Nanoribbon Interconnects,” IEEE Transactions on Electron Devices. 2019. link Times cited: 2 Abstract: Here, we report a study of carrier transport and thermoelect… read moreAbstract: Here, we report a study of carrier transport and thermoelectric properties of silicene/germanene nanoribbon (SiNR/GeNR) interconnects of varying shapes (namely, “V,” “L,” “U,” and “S” shaped) with empirical tight binding—nonequilibrium Green’s function approach. Our simulation shows that a significant reduction in both electron and phonon transmission in such differently shaped NRs compared to perfect ones. In terms of thermoelectric properties, Seebeck coefficient ( $\mathbb {S}$ ) variation in the range of −72.3 to $3.52~\mu \text{V}$ /K at 300 K for SiNR and −176 to $-\textsf {95.5}\,\,\mu \text{V}$ /K at 300 K for GeNR is observed in different pattern conditions. For Peltier coefficient ( $\pi $ ), these ranges are −0.23 to 0.001 V for SiNR and −0.053 to −0.011 V for GeNR at 300 K. Simulation also shows significant change in thermoelectric figure of merit ( $\textit {ZT}$ ) for a different pattern and temperature with peak $\textit {ZT}~0.09$ at 800 K for “U”-shaped SiNR and 0.80 at 400 K for “L”-shaped GeNR. read less NOT USED (high confidence) D. Prasad and N. Mitra, “An atomistic study of phase transition in cubic diamond Si single crystal subjected to static compression,” Computational Materials Science. 2019. link Times cited: 7 NOT USED (high confidence) A. Senturk, A. Oktem, and A. E. S. Konukman, “An investigation on the thermo-mechanical properties of boron-doped g-C3N4,” Applied Physics A. 2019. link Times cited: 11 NOT USED (high confidence) R. Khaledialidusti, A. Mishra, and A. Barnoush, “Rheological properties of super critical CO2 with CuO: Multi-scale computational modeling.,” The Journal of chemical physics. 2018. link Times cited: 12 Abstract: A multi-scale computational methodology based on the density… read moreAbstract: A multi-scale computational methodology based on the density functional theory and molecular dynamics has been used to investigate the rheological properties of super critical CO2 with CuO nano-particle (NP). Density functional theory which treats the electron density as the central variable has been used to explore the adsorption of CO2 molecules on the two most stable CuO surfaces [i.e., (111) and (011)] at absolute zero. The results of this theory would provide valuable information to make CuO NPs with the surface where the CO2 adsorption is maximum in order to have a stronger mono-layer of adsorbed CO2 molecules on the surface of the NP which is the most crucial factor in formation of a stable nanofluid. The results show that the CO2 molecule is adsorbed more strongly on the (011) surface with an adsorption energy of -99.06 kJ/mol compared to the (111) surface. A computational methodology based on molecular dynamics has been used to evaluate the enhancement of the rheological properties of the super-critical CO2 liquid based nanofluid at different temperatures and pressures. In this scale, first, the CO2 liquid has been modeled by employing the condensed-phase optimized molecular potentials for atomistic simulation studies (COMPASS) force field potential and the fluid properties computed are in excellent agreement with the literature and experiment values. Second, the nanofluid has been modeled in order to study the enhancement of the fluid properties with the CuO NPs. The charged optimized many-body force field potential has been employed to consider the effect of the charge transferring between the NPs and liquid molecules and breaking of existing bonds and the formation of new bonds. The COMPASS force field potential is also employed for the interactions between CO2 molecules. The combination of these potentials is quite a new approach for the study of the super-critical (SC)-CO2 based nanofluid. The results show that the viscosity of the SC-CO2 is enhanced between 1.3 and 2.5 times under the temperature and pressure conditions studied. read less NOT USED (high confidence) P. Zhu, R. Li, and H. Gong, “Molecular Dynamics Simulation of Nanoscale Abrasive Wear of Polycrystalline Silicon,” Crystals. 2018. link Times cited: 5 Abstract: In this work, molecular dynamics simulations of the nanoscra… read moreAbstract: In this work, molecular dynamics simulations of the nanoscratching of polycrystalline and singlecrystalline silicon substrates using a single-crystal diamond tool are conducted to investigate the grain size effect on the nanoscale wear process of polycrystalline silicon. We find that for a constant indentation depth, both the average normal force and friction force are much larger for single-crystalline silicon compared to polycrystalline silicon. It is also found that, for the polycrystalline substrates, both the average normal force and friction force increase with increasing grain size. However, the friction coefficient decreases with increasing grain size, and is the smallest for single-crystalline silicon. We also find that the quantity of wear atoms increases nonlinearly with the average normal load, inconsistent with Archard’s law. The quantity of wear atoms is smaller for polycrystalline substrates with a larger average grain size. The grain size effect in the nanoscale wear can be attributed to the fact that grain boundaries contribute to the plastic deformation of polycrystalline silicon. read less NOT USED (high confidence) L. Pizzagalli, “Atomistic modeling of point defect contributions to swelling in Xe-implanted silicon carbide,” Journal of Nuclear Materials. 2018. link Times cited: 6 NOT USED (high confidence) A. Carreras, E. Bernuz, X. Marugan, M. Llunell, and P. Alemany, “Effects of Temperature on the Shape and Symmetry of Molecules and Solids.,” Chemistry. 2018. link Times cited: 6 Abstract: Despite its undeniable problems from a philosophical point o… read moreAbstract: Despite its undeniable problems from a philosophical point of view, the concept of molecular structure, with attributes such as shape and symmetry, directly borrowed from the description of macroscopic objects, is nowadays central to most of the chemical sciences. Descriptions such as "the tetrahedral carbon atom" or "octahedral coordination complexes" are widely used as much in elementary textbooks as in the most up-to-date research articles. The definition of molecular shape is, however, not as simple as it might seem at first sight. Molecules don't behave as macroscopic objects do, and the arrangement of atoms within a molecule changes continuously due to the incessant motion of its constituent particles, nuclei, and electrons. How are molecular shape and symmetry affected by this thermal motion? In this Minireview, we introduce the language of continuous symmetry measures as a new tool to quantitatively describe the effects of temperature on molecular shape and symmetry, enriching in this way the set of molecular descriptors that might be used in the establishment of new empirical structure-property relations, of great interest in concomitant areas such as medicinal chemistry or materials science. read less NOT USED (high confidence) L. Martín, I. Santos, P. López, L. Marqués, M. Aboy, and L. Pelaz, “Modeling SiGe Through Classical Molecular Dynamics Simulations: Chasing an Appropriate Empirical Potential,” 2018 Spanish Conference on Electron Devices (CDE). 2018. link Times cited: 2 Abstract: We used classical molecular dynamics simulations to reproduc… read moreAbstract: We used classical molecular dynamics simulations to reproduce basic properties of Si, Ge and SiGe using different empirical potentials available in the literature. The empirical potential that offered the better compromise with experimental data was used to study the surface stability of these materials. We considered the (100), $(100)2\times 1$ and (111) surfaces, and we found the processing temperature range to avoid the structural degradation of studied surfaces. read less NOT USED (high confidence) J. Chen et al., “Mechanical properties and deformation behaviors of surface-modified silicon: a molecular dynamics study,” Journal of Materials Science. 2018. link Times cited: 16 NOT USED (high confidence) D. Kilymis, C. Gérard, J. Amodeo, U. Waghmare, and L. Pizzagalli, “Uniaxial compression of silicon nanoparticles: An atomistic study on the shape and size effects,” Acta Materialia. 2018. link Times cited: 35 NOT USED (high confidence) X. Song and L. Niu, “Effect of uniaxial stress on the threshold displacement energy of silicon carbide,” Journal of Applied Physics. 2018. link Times cited: 2 Abstract: Silicon Carbide (SiC) is a very promising nuclear material. … read moreAbstract: Silicon Carbide (SiC) is a very promising nuclear material. Understanding the effect of stress field on the irradiation damage behavior of SiC is crucial for the actual service. Numerous experiment and simulation studies have revealed the fundamental irradiation damage mechanism in non-stress SiC. We can learn from the previous simulation studies that though several limits and inaccuracies in calculating the threshold displacement energy(Ed) have been reported, molecular dynamics (MD) methods are still considered valid in general. In this work, we calculate the Eds of both the elements in SiC along 5 primary crystallographic directions under 13 kinds of uniaxial stress fields using the MD method. The Eds obtained under the non-stress condition are consistent with previous research works. The rules of Eds changing with the deformation are discussed in detail, and the corresponding displacement process and displacement configurations are also analyzed. In general, Eds decrease with the increase in deformation whether it is stretching or compressing. Under relatively high stress field, the reduction of Ed is significant, and the anisotropy of Ed also greatly reduces. A transition of preferred displacement configuration from octahedral interstitial to tetrahedral interstitial is reported and discussed.Silicon Carbide (SiC) is a very promising nuclear material. Understanding the effect of stress field on the irradiation damage behavior of SiC is crucial for the actual service. Numerous experiment and simulation studies have revealed the fundamental irradiation damage mechanism in non-stress SiC. We can learn from the previous simulation studies that though several limits and inaccuracies in calculating the threshold displacement energy(Ed) have been reported, molecular dynamics (MD) methods are still considered valid in general. In this work, we calculate the Eds of both the elements in SiC along 5 primary crystallographic directions under 13 kinds of uniaxial stress fields using the MD method. The Eds obtained under the non-stress condition are consistent with previous research works. The rules of Eds changing with the deformation are discussed in detail, and the corresponding displacement process and displacement configurations are also analyzed. In general, Eds decrease with the increase in deformati... read less NOT USED (high confidence) Y. Oh, Y. Park, C. Zechner, and I. Martín-Bragado, “Integrated Framework of DFT, Empirical potentials and Full Lattice Atomistic Kinetic Monte-Carlo to Determine Vacancy Diffusion in SiGe,” 2018 International Conference on Simulation of Semiconductor Processes and Devices (SISPAD). 2018. link Times cited: 0 Abstract: To simulate the point-defect diffusion in atomic scale, the … read moreAbstract: To simulate the point-defect diffusion in atomic scale, the software platform with a full lattice atomistic kinetic Monte-Carlo (AKMC) capability was developed. In this platform, the theoretical values of migration frequencies and barriers depending on the configuration of the nearest neighbors were automatically calculated by linking the simulator with the density functional theory (DFT) and classical molecular dynamics (CMD) tools. Ge mole fraction dependent diffusivity of a vacancy in SiGe was extracted in this work. read less NOT USED (high confidence) K. Kohno and M. Ishimaru, “Molecular-dynamics simulations of solid phase epitaxy in silicon: Effects of system size, simulation time, and ensemble,” Japanese Journal of Applied Physics. 2018. link Times cited: 3 Abstract: Solid phase epitaxial (SPE) recrystallization of amorphous S… read moreAbstract: Solid phase epitaxial (SPE) recrystallization of amorphous Si on a Si(001) substrate was examined by large-scale (6144–129024 Si atoms), long-time (up to 2000 ns) molecular-dynamics (MD) simulations using the empirical Tersoff interatomic potential. We particularly focused on the effects of the MD cell size, simulation time, and ensemble on the SPE growth rate. We found that the simulations under the isothermal–isochoric conditions (NVT ensemble) show a higher crystallization rate than those under the isothermal–isobaric conditions (NPT ensemble). The system size dealt with in the present MD simulation, i.e., >6144 Si atoms, was enough to estimate the SPE growth rate. The Arrhenius plot of the growth rate between 1300 and 1600 K exhibited a single activation energy, ∼2.4 eV, which is in agreement with the experimental value (∼2.7 eV). However, the growth rate at temperatures below 1300 K deviated from the extrapolated ones from 1300 to 1600 K, which is because recrystallization does not reach a steady state: long-time MD simulations are required to estimate the growth rate at low temperature. The structure analysis of amorphous/crystalline interfaces suggested that the braking of atomic bonds parallel to the interface becomes a rate-limiting step of the SPE growth. read less NOT USED (high confidence) D. Adachi, N. Tsujimoto, R. Akashi, S. Todo, and S. Tsuneyuki, “Search for Common Minima in Joint Optimization of Multiple Cost Functions,” Comput. Phys. Commun. 2018. link Times cited: 8 NOT USED (high confidence) M. Wen, S. Carr, S. Fang, E. Kaxiras, and E. Tadmor, “Dihedral-angle-corrected registry-dependent interlayer potential for multilayer graphene structures,” Physical Review B. 2018. link Times cited: 39 Abstract: The structural relaxation of multilayer graphene is essentia… read moreAbstract: The structural relaxation of multilayer graphene is essential in describing the interesting electronic properties induced by intentional misalignment of successive layers, including the recently reported superconductivity in twisted bilayer graphene. This is difficult to accomplish without an accurate interatomic potential. Here, we present a new, registry-dependent Kolmogorov-Crespi type interatomic potential to model interlayer interactions in multilayer graphene structures. It consists of two parts representing attractive interaction due to dispersion, and repulsive interaction due to anisotropic overlap of electronic orbitals. An important new feature is a dihedral-angle-dependent term that is added to the repulsive part in order to describe correctly several distinct stacking states that the original Kolmogorov-Crespi potential cannot distinguish. We refer to the new model as the Dihedral-angle-corrected Registry-dependent Interlayer Potential (DRIP). Computations for several test problems show that DRIP correctly reproduces the binding, sliding, and twisting energies and forces obtained from ab initio total-energy calculations based on density functional theory. We use the new potential to study the structural properties of a twisted graphene bilayer and the exfoliation of graphene from graphite. Our potential is available through the OpenKIM interatomic potential repository at https://openkim.org. read less NOT USED (high confidence) M. Badri et al., “COMBINING MICRO- MESO- AND MACRO-SCOPIC NUMERICAL METHODS FOR MULTISCALE RADIATIVE TRANSFER MODELING OF SiC-BASED FOAMS UP TO VERY HIGH TEMPERATURES.” 2018. link Times cited: 0 Abstract: A general multiscale numerical approach is proposed to finel… read moreAbstract: A general multiscale numerical approach is proposed to finely reproduce, up to 1300 K, the radiative heat transfers within alpha silicon carbide-based open-cell foams, with tuned chemical and textural features. The complete modeling is based on a thorough analysis performed at micro-, meso-, and macro-scopic scales. To gauge, at the microscopic scale , the influence of the electron-phonon coupling on the intrinsic optical properties of silicon carbide, a molecular dynamic method involving a modified Tersoff potential is used. Then, at the mesoscopic scale , with optical indices provided by our molecular dynamic simulations, a collision-based Monte Carlo ray tracing method is used for retrieving the homogenized radiative properties of the selected foams. Finally, at the macroscopic scale , for a set of foams (porosity ∼ 0.4 - 0.9), we used our micro-meso constructed radiative properties for calculating the propagation of radiation by solving the radiative transfer equation using the vectorial finite element method. In addition, a fictitious foam constructed using heavily chemical doping at microscopic level, is put forward to change the volumetric propagation of the thermal radiation. read less NOT USED (high confidence) G. P. P. Pun, R. Batra, R. Ramprasad, and Y. Mishin, “Physically informed artificial neural networks for atomistic modeling of materials,” Nature Communications. 2018. link Times cited: 188 NOT USED (high confidence) D. Gobrecht, S. Bromley, J. Plane, L. Decin, and S. Cristallo, “On the onset of dust formation in AGB stars,” Proceedings of the International Astronomical Union. 2018. link Times cited: 0 Abstract: A promising candidate to initiate dust formation in oxygen-r… read moreAbstract: A promising candidate to initiate dust formation in oxygen-rich AGB stars is alumina (Al2O3) showing an emission feature around ∼13μm attributed to Al−O stretching and bending modes (Posch+99,Sloan+03). The counterpart to alumina in carbon-rich AGB atmospheres is the highly refractory silicon carbide (SiC) showing a characteristic feature around 11.3μm (Treffers74). Alumina and SiC grains are thought to represent the first condensates to emerge in AGB stellar atmospheres. We follow a bottom-up approach, starting with the smallest stoichiometric clusters (i.e. Al4O6, Si2C2), successively building up larger-sized clusters. We present new results of quantum-mechanical structure calculations of (Al2O3)n, n = 1−10 and (SiC)n clusters with n = 1−16, including potential energies, rotational constants, and structure-specific vibrational spectra. We demonstrate the energetic viability of homogeneous nucleation scenarios where monomers (Al2O3 and SiC) or dimers (Al4O6 and Si2C2) are successively added. We find significant differences between our quantum theory based results and nanoparticle properties derived from (classical) nucleation theory. read less NOT USED (high confidence) S. Thomas, K. Ajith, S. U. Lee, and M. C. Valsakumar, “Assessment of the mechanical properties of monolayer graphene using the energy and strain-fluctuation methods,” RSC Advances. 2018. link Times cited: 28 Abstract: Molecular statics and dynamics simulations were performed to… read moreAbstract: Molecular statics and dynamics simulations were performed to investigate the mechanical properties of a monolayer graphene sheet using an efficient energy method and strain-fluctuation method. Using the energy method, we observed that the mechanical properties of an infinite graphene sheet are isotropic, whereas for a finite sheet, they are anisotropic. This work is the first to report the temperature-dependent elastic constants of graphene between 100 and 1000 K using the strain-fluctuation method. We found that the out-of-plane thermal excursions in a graphene membrane lead to strong anharmonic behavior, which allows large deviations from isotropic elasticity. The computed Young's modulus and Poisson's ratio of a sheet with an infinite spatial extent are 0.939 TPa and 0.223, respectively. We also found that graphene sheets with both finite and infinite spatial extent satisfy the Born elastic stability conditions. We extracted the variation in bending modulus with the system size at zero kelvin (0.83 eV) using a formula derived from the Foppl–von Karman approach. When the temperature increases, the Young's modulus of the sample decreases, which effectively reduces the longitudinal and shear wave velocities. read less NOT USED (high confidence) J. Zhang and J. Zhou, “Piezoelectric effects on the resonance frequencies of boron nitride nanosheets,” Nanotechnology. 2018. link Times cited: 9 Abstract: By using molecular dynamics (MD) simulations, we find in thi… read moreAbstract: By using molecular dynamics (MD) simulations, we find in this work that due to the piezoelectric characteristic of boron nitride (BN) nanosheets their resonance frequencies can be efficiently tuned by applying an external electric field. This finding suggests that BN nanosheet can be treated as a good building block for designing novel piezoelectrically tunable two-dimensional nanoresonators. As BN nanosheets possess an inversely stacked structure, the applied electric field has different effects on the resonance frequency of BN nanosheets with odd and even layers. The influence of piezoelectric effect on the vibration behaviours observed in MD simulations is found to significantly deviate from the prediction of the conventional Euler–Bernoulli beam model (EBM), since the EBM cannot account for the weak van der Waals interaction between neighbouring layers in BN nanosheets. To take into account the interlayer interaction in the mathematical modelling of the piezoelectric effect on the vibration of BN nanosheets, we propose here a novel multiple beam model (MBM), which can account for both interlayer stretching and shearing deformations. The MBM result is found to be in a good agreement with the MD result without any additional parameters fitting, which indicates that the present MBM can be treated as a more precise theoretical model in the future study of the vibration properties of BN nanosheets. read less NOT USED (high confidence) V. Vijayaraghavan and L. Zhang, “Effective Mechanical Properties and Thickness Determination of Boron Nitride Nanosheets Using Molecular Dynamics Simulation,” Nanomaterials. 2018. link Times cited: 37 Abstract: Research in boron nitride nanosheets (BNNS) has evoked signi… read moreAbstract: Research in boron nitride nanosheets (BNNS) has evoked significant interest in the field of nano-electronics, nanoelectromechanical (NEMS) devices, and nanocomposites due to its excellent physical and chemical properties. Despite this, there has been no reliable data on the effective mechanical properties of BNNS, with the literature reporting a wide scatter of strength data for the same material. To address this challenge, this article presents a comprehensive analysis on the effect of vital factors which can result in variations of the effective mechanical properties of BNNS. Additionally, the article also presents the computation of the correct wall thickness of BNNS from elastic theory equations, which is an important descriptor for any research to determine the mechanical properties of BNNS. It was predicted that the correct thickness of BNNS should be 0.106 nm and the effective Young’s modulus to be 2.75 TPa. It is anticipated that the findings from this study could provide valuable insights on the true mechanical properties of BNNS that could assist in the design and development of efficient BN-based NEMS devices, nanosensors, and nanocomposites. read less NOT USED (high confidence) B. Lee, “Effect of phonon scattering by substitutional and structural defects on thermal conductivity of 2D graphene,” Journal of Physics: Condensed Matter. 2018. link Times cited: 8 Abstract: The ability to tailor the thermal conductivity of graphene b… read moreAbstract: The ability to tailor the thermal conductivity of graphene by introducing crystalline defects has attracted considerable research attention. In this study, nonequilibrium molecular dynamics calculation is used to investigate the effect of crystalline defects on the thermal conductivity of 2D graphene. The defects considered include substitutional nitrogen and silicon, pure structural single vacancy and Stone–Wales defects, and structurally different pyridinic nitrogen. In particular, this study focuses on the unique phonon scattering behaviors arising from the low dimensionality of graphene. The results reveal that the low dimensionality of graphene has a negligible effect on phonon scattering in substitutionally defected graphene, for which the Klemens scattering model is accurate without the need for any corrections. The substitutional silicon defect leads to more effective reduction of the thermal conductivity than the structural defects because of the effect of change in the hybridization and the mass on the scattering. Almost equal reductions are observed for the two structural defects, the scattering strengths of which are significantly weakened by the two dimensionality of graphene. Callaway analysis of the vacancy scattering reveals that even with the perturbation of the vacancy, the 2D honeycomb structure preserves considerable phonon stability compared with a 3D material. In addition, the absence of mass deficiency for the Stone–Wales defect suggests that the contribution of mass deficiency is minimized for structural defects of graphene. Finally, opposite to the findings for the substitutional nitrogen defect, the introduction of pyridinic nitrogen leads to further reduction of the thermal conductivity compared with that for a single vacancy defect. read less NOT USED (high confidence) F. Jabbari, A. Rajabpour, and S. Saedodin, “Viscosity of carbon nanotube/water nanofluid,” Journal of Thermal Analysis and Calorimetry. 2018. link Times cited: 40 NOT USED (high confidence) P. Brault, “Multiscale Molecular Dynamics Simulation of Plasma Processing: Application to Plasma Sputtering,” Frontiers in Physics. 2018. link Times cited: 16 Abstract: Molecular dynamics is an atomistic tool that is able to trea… read moreAbstract: Molecular dynamics is an atomistic tool that is able to treat dynamics of atom/molecules/cluster assemblies mainly in the condensed and liquid phases. The goal of the present article is to provide a new methodology for describing all phenomena of plasma processing and beyond such as gas phase chemistry as well. Simulations of condensed matter and liquid processes by molecular dynamics are now readily accessible provided the interaction potentials are available, so quantitative parameters can be deduced as diffusion coefficient, … The situation is less clear for gas phase processes while they operate on larger space and time scales than for condensed phases and at lower specie densities. The present article is proposing a new methodology for describing plasma core interactions in taking into account experimental space and time scales. This is illustrated on a plasma sputtering process and deposition in a single simulation. read less NOT USED (high confidence) L. N. Abdulkadir, K. Abou-El-Hossein, A. I. Jumare, M. Liman, T. A. Olaniyan, and P. B. Odedeyi, “Review of molecular dynamics/experimental study of diamond-silicon behavior in nanoscale machining,” The International Journal of Advanced Manufacturing Technology. 2018. link Times cited: 0 NOT USED (high confidence) L. N. Abdulkadir, K. Abou-El-Hossein, A. I. Jumare, M. Liman, T. A. Olaniyan, and P. B. Odedeyi, “Review of molecular dynamics/experimental study of diamond-silicon behavior in nanoscale machining,” The International Journal of Advanced Manufacturing Technology. 2018. link Times cited: 38 NOT USED (high confidence) R. Rezaei, M. Shariati, and H. Tavakoli-Anbaran, “Mechanical characteristics and deformation mechanism of boron nitride nanotube reinforced metal matrix nanocomposite based on molecular dynamics simulations,” Journal of Materials Research. 2018. link Times cited: 13 Abstract: Boron nitride nanotubes (BNNTs) have been utilized to streng… read moreAbstract: Boron nitride nanotubes (BNNTs) have been utilized to strengthen various engineering materials especially metal matrix composites thanks to their extraordinary high tensile strength, elastic modulus, and failure strain. In this paper, single- and multi-walled BNNTs were therefore used to combine with aluminum (Al) metal matrix. Mechanical characteristics and deformation mechanism of nanocomposites reinforced with long (continuous) and short (discontinuous) BNNTs were then investigated for different loadings including uniaxial tension and compression and different boundary conditions based on molecular dynamics simulations. It was found that long BNNTs remarkably improved tensile mechanical properties of the matrix and effectively enhanced elastic modulus and strength of the nanocomposites by 82% and 79.4%, respectively. They could provide effective barriers to propagation path of dislocations formed inside the matrix. Diameter and wall number of the reinforcement did not leave considerable impacts on the nanocomposite behavior while its atomic fraction remarkably influenced the material response. read less NOT USED (high confidence) M. Kroonblawd and N. Goldman, “Mechanochemical formation of heterogeneous diamond structures during rapid uniaxial compression in graphite,” Physical Review B. 2018. link Times cited: 18 Abstract: We predict mechanochemical formation of heterogeneous diamon… read moreAbstract: We predict mechanochemical formation of heterogeneous diamond structures from rapid uniaxial compression in graphite using quantum molecular dynamics simulations. Ensembles of simulations reveal the formation of different diamond-like products starting from thermal graphite crystal configurations. We identify distinct classes of final products with characteristic probabilities of formation, stress states, and electrical properties, and show through simulations of rapid quenching that these products are nominally stable and can be recovered at room temperature and pressure. Some of the diamond products exhibit significant disorder and partial closure of the HOMOLUMO gap. Seeding atomic vacancies in graphite significantly biases toward forming products with small HOMO-LUMO gaps. We show that a strong correlation between the HOMO-LUMO gap and disorder in tetrahedral bonding configurations informs which kinds of structural defects are associated with gap closure. The rapid diffusionless transformation of graphite is found to lock vacancy defects into the final diamond structure, resulting in configurations that prevent sp3 bonding and lead to localized HOMO and LUMO states with a small gap. read less NOT USED (high confidence) Z. Zhang, P. Chen, F. Qin, T. An, and H. Yu, “Mechanical properties of silicon in subsurface damage layer from nano-grinding studied by atomistic simulation,” AIP Advances. 2018. link Times cited: 11 Abstract: Ultra-thin silicon wafer is highly demanded by semi-conducto… read moreAbstract: Ultra-thin silicon wafer is highly demanded by semi-conductor industry. During wafer thinning process, the grinding technology will inevitably induce damage to the surface and subsurface of silicon wafer. To understand the mechanism of subsurface damage (SSD) layer formation and mechanical properties of SSD layer, atomistic simulation is the effective tool to perform the study, since the SSD layer is in the scale of nanometer and hardly to be separated from underneath undamaged silicon. This paper is devoted to understand the formation of SSD layer, and the difference between mechanical properties of damaged silicon in SSD layer and ideal silicon. With the atomistic model, the nano-grinding process could be performed between a silicon workpiece and diamond tool under different grinding speed. To reach a thinnest SSD layer, nano-grinding speed will be optimized in the range of 50-400 m/s. Mechanical properties of six damaged silicon workpieces with different depths of cut will be studied. The SSD layer from each workpiece will be isolated, and a quasi-static tensile test is simulated to perform on the isolated SSD layer. The obtained stress-strain curve is an illustration of overall mechanical properties of SSD layer. By comparing the stress-strain curves of damaged silicon and ideal silicon, a degradation of Young’s modulus, ultimate tensile strength (UTS), and strain at fracture is observed.Ultra-thin silicon wafer is highly demanded by semi-conductor industry. During wafer thinning process, the grinding technology will inevitably induce damage to the surface and subsurface of silicon wafer. To understand the mechanism of subsurface damage (SSD) layer formation and mechanical properties of SSD layer, atomistic simulation is the effective tool to perform the study, since the SSD layer is in the scale of nanometer and hardly to be separated from underneath undamaged silicon. This paper is devoted to understand the formation of SSD layer, and the difference between mechanical properties of damaged silicon in SSD layer and ideal silicon. With the atomistic model, the nano-grinding process could be performed between a silicon workpiece and diamond tool under different grinding speed. To reach a thinnest SSD layer, nano-grinding speed will be optimized in the range of 50-400 m/s. Mechanical properties of six damaged silicon workpieces with different depths of cut will be studied. The SSD layer fro... read less NOT USED (high confidence) A. Bartók, J. Kermode, N. Bernstein, and G. Csányi, “Machine Learning a General-Purpose Interatomic Potential for Silicon,” Physical Review X. 2018. link Times cited: 291 Abstract: The success of first principles electronic structure calcula… read moreAbstract: The success of first principles electronic structure calculation for predictive modeling in chemistry, solid state physics, and materials science is constrained by the limitations on simulated length and time scales due to computational cost and its scaling. Techniques based on machine learning ideas for interpolating the Born-Oppenheimer potential energy surface without explicitly describing electrons have recently shown great promise, but accurately and efficiently fitting the physically relevant space of configurations has remained a challenging goal. Here we present a Gaussian Approximation Potential for silicon that achieves this milestone, accurately reproducing density functional theory reference results for a wide range of observable properties, including crystal, liquid, and amorphous bulk phases, as well as point, line, and plane defects. We demonstrate that this new potential enables calculations that would be extremely expensive with a first principles electronic structure method, such as finite temperature phase boundary lines, self-diffusivity in the liquid, formation of the amorphous by slow quench, and dynamic brittle fracture. We show that the uncertainty quantification inherent to the Gaussian process regression framework gives a qualitative estimate of the potential's accuracy for a given atomic configuration. The success of this model shows that it is indeed possible to create a useful machine-learning-based interatomic potential that comprehensively describes a material, and serves as a template for the development of such models in the future. read less NOT USED (high confidence) Z. Fan, H. Dong, A. Harju, and T. Ala‐Nissila, “Homogeneous nonequilibrium molecular dynamics method for heat transport and spectral decomposition with many-body potentials,” Physical Review B. 2018. link Times cited: 51 Abstract: The standard equilibrium Green--Kubo and nonequilibrium mole… read moreAbstract: The standard equilibrium Green--Kubo and nonequilibrium molecular dynamics (MD) methods for computing thermal transport coefficients in solids typically require relatively long simulation times and large system sizes. To this end, we revisit here the homogeneous nonequilibrium MD method by Evans [Phys. Lett. A 91, 457 (1982)] and generalize it to many-body potentials that are required for more realistic materials modeling. We also propose a method for obtaining spectral conductivity and phonon mean-free path from the simulation data. This spectral decomposition method does not require lattice dynamics calculations and can find important applications in spatially complex structures. We benchmark the method by calculating thermal conductivities of three-dimensional silicon, two-dimensional graphene, and a quasi-one-dimensional carbon nanotube and show that the method is about one to two orders of magnitude more efficient than the Green--Kubo method. We apply the spectral decomposition method to examine the long-standing dispute over thermal conductivity convergence vs divergence in carbon nanotubes. read less NOT USED (high confidence) A. Verma, A. Parashar, and M. Packirisamy, “Atomistic modeling of graphene/hexagonal boron nitride polymer nanocomposites: a review,” Wiley Interdisciplinary Reviews: Computational Molecular Science. 2018. link Times cited: 80 Abstract: Due to their exceptional properties, graphene and hexagonal … read moreAbstract: Due to their exceptional properties, graphene and hexagonal boron nitride (h‐BN) nanofillers are emerging as potential candidates for reinforcing the polymer‐based nanocomposites. Graphene and h‐BN have comparable mechanical and thermal properties, whereas due to high band gap in h‐BN (~5 eV), have contrasting electrical conductivities. Atomistic modeling techniques are viable alternatives to the costly and time‐consuming experimental techniques, and are accurate enough to predict the mechanical properties, fracture toughness, and thermal conductivities of graphene and h‐BN‐based nanocomposites. Success of any atomistic model entirely depends on the type of interatomic potential used in simulations. This review article encompasses different types of interatomic potentials that can be used for the modeling of graphene, h‐BN, and corresponding nanocomposites, and further elaborates on developments and challenges associated with the classical mechanics‐based approach along with synergic effects of these nano reinforcements on host polymer matrix. read less NOT USED (high confidence) R. B. Hudson and A. Sinha, “Vibration of carbon nanotubes with defects: order reduction methods,” Proceedings of the Royal Society A: Mathematical, Physical and Engineering Sciences. 2018. link Times cited: 3 Abstract: Order reduction methods are widely used to reduce computatio… read moreAbstract: Order reduction methods are widely used to reduce computational effort when calculating the impact of defects on the vibrational properties of nearly periodic structures in engineering applications, such as a gas-turbine bladed disc. However, despite obvious similarities these techniques have not yet been adapted for use in analysing atomic structures with inevitable defects. Two order reduction techniques, modal domain analysis and modified modal domain analysis, are successfully used in this paper to examine the changes in vibrational frequencies, mode shapes and mode localization caused by defects in carbon nanotubes. The defects considered are isotope defects and Stone–Wales defects, though the methods described can be extended to other defects. read less NOT USED (high confidence) F. Fang and F. Xu, “Recent Advances in Micro/Nano-cutting: Effect of Tool Edge and Material Properties,” Nanomanufacturing and Metrology. 2018. link Times cited: 97 NOT USED (high confidence) G. Fugallo and L. Colombo, “Calculating lattice thermal conductivity: a synopsis,” Physica Scripta. 2018. link Times cited: 41 Abstract: We provide a tutorial introduction to the modern theoretical… read moreAbstract: We provide a tutorial introduction to the modern theoretical and computational schemes available to calculate the lattice thermal conductivity in a crystalline dielectric material. While some important topics in thermal transport will not be covered (including thermal boundary resistance, electronic thermal conduction, and thermal rectification), we aim at: (i) framing the calculation of thermal conductivity within the general non-equilibrium thermodynamics theory of transport coefficients, (ii) presenting the microscopic theory of thermal conduction based on the phonon picture and the Boltzmann transport equation, and (iii) outlining the molecular dynamics schemes to calculate heat transport. A comparative and critical addressing of the merits and drawbacks of each approach will be discussed as well. read less NOT USED (high confidence) T. Iwata and K. Shintani, “Reduction of the thermal conductivity of a graphene/hBN heterobilayer via interlayer sp3 bonds.,” Physical chemistry chemical physics : PCCP. 2018. link Times cited: 21 Abstract: Thermal conductivities (TCs) of graphene (g)/hexagonal boron… read moreAbstract: Thermal conductivities (TCs) of graphene (g)/hexagonal boron nitride (hBN) heterobilayers with interlayer sp3 bonds are computed using nonequilibrium molecular dynamics (NEMD) simulations. It is revealed that the TC of a g/hBN heterobilayer drastically decreases if there is even a few interlayer sp3 bonds, and continues to gradually decrease upon increasing their fraction up to 0.25, where the fraction of the interlayer sp3 bonds is defined by the atomic fraction of interlayer-sp3-bonded carbon atoms within graphene constituting a g/hBN heterobilayer. If their fraction exceeds 0.25, the TC of a g/hBN heterobilayer gradually increases, namely, the TC of a g/hBN heterobilayer takes a minimum at the fraction of 0.25 of the interlayer sp3 bonds. In order to understand such a behavior of the TC of the heterobilayer, the local phonon density of states (DOSs) in each of the two layers is calculated. By examining the local phonon DOSs, it was found that the existence of the minimum TC of the heterobilayer can be understood by considering both the phonon scattering and the characteristic change of the heterobilayer structure. In the range of the low fractions of interlayer sp3 bonds, the van der Waals (vdW) interactions are predominantly effective for binding the two layers, and the interlayer sp3 bonds act as phonon scatterers like defects to make the TC of the heterobilayer decrease. Upon increasing the fraction of interlayer sp3 bonds, the contribution of the interlayer sp3 bonds to the unification of the two layers becomes stronger, and hence the rigidity of the heterobilayer structure gradually increases. If their fraction exceeds 0.25, the heterobilayer structure approaches a quasi-three-dimensional one, so that the TC of the heterobilayer increases. These findings will be useful for tuning the TCs of g/hBN heterobilayers via interlayer sp3 bonds. read less NOT USED (high confidence) M. Z. Hossain, T. Hao, and B. Silverman, “Stillinger–Weber potential for elastic and fracture properties in graphene and carbon nanotubes,” Journal of Physics: Condensed Matter. 2018. link Times cited: 42 Abstract: This paper presents a new framework for determining the Stil… read moreAbstract: This paper presents a new framework for determining the Stillinger–Weber (SW) potential parameters for modeling fracture in graphene and carbon nanotubes. In addition to fitting the equilibrium material properties, the approach allows fitting the potential to the forcing behavior as well as the mechanical strength of the solid, without requiring ad hoc modification of the nearest-neighbor interactions for avoiding artificial stiffening of the lattice at larger deformation. Consistent with the first-principles results, the potential shows the Young’s modulus of graphene to be isotropic under symmetry-preserving and symmetry-breaking deformation conditions. It also shows the Young’s modulus of carbon nanotubes to be diameter-dependent under symmetry-breaking loading conditions. The potential addresses the key deficiency of existing empirical potentials in reproducing experimentally observed glass-like brittle fracture in graphene and carbon nanotubes. In simulating the entire deformation process leading to fracture, the SW-potential costs several factors less computational time compared to the state-of-the-art interatomic potentials that enables exploration of the fracture processes in large atomistic systems which are inaccessible otherwise. read less NOT USED (high confidence) W. Li, X. Yao, and X. Zhang, “Planar impacts on nanocrystalline SiC: a comparison of different potentials,” Journal of Materials Science. 2018. link Times cited: 14 NOT USED (high confidence) L. Pizzagalli, J. Godet, and S. Brochard, “Influence of strain on dislocation core in silicon,” Philosophical Magazine. 2018. link Times cited: 2 Abstract: First principles, density functional-based tight binding and… read moreAbstract: First principles, density functional-based tight binding and semi-empirical interatomic potentials calculations are performed to analyse the influence of large strains on the structure and stability of a 60 dislocation in silicon. Such strains typically arise during the mechanical testing of nanostructures like nanopillars or nanoparticles. We focus on bi-axial strains in the plane normal to the dislocation line. Our calculations surprisingly reveal that the dislocation core structure largely depends on the applied strain, for strain levels of about 5%. In the particular case of bi-axial compression, the transformation of the dislocation to a locally disordered configuration occurs for similar strain magnitudes. The formation of an opening, however, requires larger strains, of about 7.5%. Furthermore, our results suggest that electronic structure methods should be favoured to model dislocation cores in case of large strains whenever possible. read less NOT USED (high confidence) D. K. Das and J. Sarkar, “Comparison of mechanical properties of silicene estimated using different testing procedures: A molecular dynamics study,” Journal of Applied Physics. 2018. link Times cited: 11 Abstract: Silicene, a two-dimensional allotrope and silicon counterpar… read moreAbstract: Silicene, a two-dimensional allotrope and silicon counterpart of graphene, has recently attracted scientists all over the world due to its superior material properties and thus can be a potential applicant as a reinforcing agent. The mechanical properties of silicene have been studied using several testings (tensile, bending, oscillation, and equilibrium) through the molecular dynamics (MD) simulation technique. Plastic flow occurs, and 46% elongation is observed in a silicene sheet with dimensions of (200 × 700) A for room temperature (298 K) tensile testing. The yield strength, ultimate tensile strength, Young's modulus (E), cohesive energy, and bulk modulus are found to be 18.28 GPa, 23.96 GPa, 5.25 TPa, 3.72 eV atom−1, and 3.62 TPa, respectively. For the same sample, a Poisson ratio of 0.75 is observed. An ultrahigh mechanical strength of silicene, even higher than the previously predicted value of 0.178 TPa, is observed in this study. read less NOT USED (high confidence) P. E. Small et al., “Acceleration of Dynamic n-Tuple Computations in Many-Body Molecular Dynamics,” Proceedings of the International Conference on High Performance Computing in Asia-Pacific Region. 2018. link Times cited: 0 Abstract: Computation on dynamic n-tuples of particles is ubiquitous i… read moreAbstract: Computation on dynamic n-tuples of particles is ubiquitous in scientific computing, with an archetypal application in many-body molecular dynamics (MD) simulations. We propose a tuple-decomposition (TD) approach that reorders computations according to dynamically created lists of n-tuples. We analyze the performance characteristics of the TD approach on general purpose graphics processing units for MD simulations involving pair (n = 2) and triplet (n = 3) interactions. The results show superior performance of the TD approach over the conventional particle-decomposition (PD) approach. Detailed analyses reveal the register footprint as the key factor that dictates the performance. Furthermore, the TD approach is found to outperform PD for more intensive computations of quadruplet (n = 4) interactions in first principles-informed reactive MD simulations based on the reactive force-field (ReaxFF) method. This work thus demonstrates the viable performance portability of the TD approach across a wide range of applications. read less NOT USED (high confidence) L. Cui, S. Shi, G. Wei, and X. Du, “Shear deformation-induced anisotropic thermal conductivity of graphene.,” Physical chemistry chemical physics : PCCP. 2018. link Times cited: 6 Abstract: Graphene-based materials exhibit intriguing phononic and the… read moreAbstract: Graphene-based materials exhibit intriguing phononic and thermal properties. In this paper, we have investigated the heat conductance in graphene sheets under shear-strain-induced wrinkling deformation, using equilibrium molecular dynamics simulations. A significant orientation dependence of the thermal conductivity of graphene wrinkles (GWs) is observed. The directional dependence of the thermal conductivity of GWs stems from the anisotropy of phonon group velocities as revealed by the G-band broadening of the phonon density of states (DOS), the anisotropy of thermal resistance as evidenced by the G-band peak mismatch of the phonon DOS, and the anisotropy of phonon relaxation times as a direct result of the double-exponential-fitting of the heat current autocorrelation function. By analyzing the relative contributions of different lattice vibrations to the heat flux, we have shown that the contributions of different lattice vibrations to the heat flux of GWs are sensitive to the heat flux direction, which further indicates the orientation-dependent thermal conductivity of GWs. Moreover, we have found that, in the strain range of 0-0.1, the anisotropy ratio of GWs increases monotonously with increasing shear strain. This is induced by the change in the number of wrinkles, which is more influential in the direction perpendicular to the wrinkle texture. The findings elucidated here emphasize the utility of wrinkle engineering for manipulation of nanoscale heat transport, which offers opportunities for the development of thermal channeling devices. read less NOT USED (high confidence) J. Luo, A. Alateeqi, L. Liu, and T. Sinno, “Atomistic simulations of carbon diffusion and segregation in liquid silicon,” Journal of Applied Physics. 2017. link Times cited: 9 Abstract: The diffusivity of carbon atoms in liquid silicon and their … read moreAbstract: The diffusivity of carbon atoms in liquid silicon and their equilibrium distribution between the silicon melt and crystal phases are key, but unfortunately not precisely known parameters for the global models of silicon solidification processes. In this study, we apply a suite of molecular simulation tools, driven by multiple empirical potential models, to compute diffusion and segregation coefficients of carbon at the silicon melting temperature. We generally find good consistency across the potential model predictions, although some exceptions are identified and discussed. We also find good agreement with the range of available experimental measurements of segregation coefficients. However, the carbon diffusion coefficients we compute are significantly lower than the values typically assumed in continuum models of impurity distribution. Overall, we show that currently available empirical potential models may be useful, at least semi-quantitatively, for studying carbon (and possibly other impurity) trans... read less NOT USED (high confidence) F. Zheng, H. Pham, and L.-wang Wang, “Effects of the c-Si/a-SiO2 interfacial atomic structure on its band alignment: an ab initio study.,” Physical chemistry chemical physics : PCCP. 2017. link Times cited: 14 Abstract: The crystalline-Si/amorphous-SiO2 (c-Si/a-SiO2) interface is… read moreAbstract: The crystalline-Si/amorphous-SiO2 (c-Si/a-SiO2) interface is an important system used in many applications, ranging from transistors to solar cells. The transition region of the c-Si/a-SiO2 interface plays a critical role in determining the band alignment between the two regions. However, the question of how this interface band offset is affected by the transition region thickness and its local atomic arrangement is yet to be fully investigated. Here, by controlling the parameters of the classical Monte Carlo bond switching algorithm, we have generated the atomic structures of the interfaces with various thicknesses, as well as containing Si at different oxidation states. A hybrid functional method, as shown by our calculations to reproduce the GW and experimental results for bulk Si and SiO2, was used to calculate the electronic structure of the heterojunction. This allowed us to study the correlation between the interface band characterization and its atomic structures. We found that although the systems with different thicknesses showed quite different atomic structures near the transition region, the calculated band offset tended to be the same, unaffected by the details of the interfacial structure. Our band offset calculation agrees well with the experimental measurements. This robustness of the interfacial electronic structure to its interfacial atomic details could be another reason for the success of the c-Si/a-SiO2 interface in Si-based electronic applications. Nevertheless, when a reactive force field is used to generate the a-SiO2 and c-Si/a-SiO2 interfaces, the band offset significantly deviates from the experimental values by about 1 eV. read less NOT USED (high confidence) J.-W. Jiang, B. Wang, and H. S. Park, “Topologically protected interface phonons in two-dimensional nanomaterials: hexagonal boron nitride and silicon carbide.,” Nanoscale. 2017. link Times cited: 26 Abstract: We perform both lattice dynamics analysis and molecular dyna… read moreAbstract: We perform both lattice dynamics analysis and molecular dynamics simulations to demonstrate the existence of topologically protected phonon modes in two-dimensional, monolayer hexagonal boron nitride and silicon carbide sheets. The topological phonon modes are found to be localized at an in-plane interface that divides these systems into two regions of distinct valley Chern numbers. The dispersion of this topological phonon mode crosses over the frequency gap, which is opened through analogy with the quantum valley Hall effect by breaking the inversion symmetry of the primitive unit cells. Consequently, vibrational energy with frequency within this gap is topologically protected, resulting in wave propagation that exhibits minimal backscattering, is robust with regard to structural defects such as sharp corners, and exhibits excellent temporal stability. Our findings open up the possibility of actuating and detecting topological phonons in two-dimensional nanomaterials. read less NOT USED (high confidence) B. Narayanan et al., “Machine learnt bond order potential to model metal-organic (Co-C) heterostructures.,” Nanoscale. 2017. link Times cited: 7 Abstract: A fundamental understanding of the inter-relationships betwe… read moreAbstract: A fundamental understanding of the inter-relationships between structure, morphology, atomic scale dynamics, chemistry, and physical properties of mixed metallic-covalent systems is essential to design novel functional materials for applications in flexible nano-electronics, energy storage and catalysis. To achieve such knowledge, it is imperative to develop robust and computationally efficient atomistic models that describe atomic interactions accurately within a single framework. Here, we present a unified Tersoff-Brenner type bond order potential (BOP) for a Co-C system, trained against lattice parameters, cohesive energies, equation of state, and elastic constants of different crystalline phases of cobalt as well as orthorhombic Co2C derived from density functional theory (DFT) calculations. The independent BOP parameters are determined using a combination of supervised machine learning (genetic algorithms) and local minimization via the simplex method. Our newly developed BOP accurately describes the structural, thermodynamic, mechanical, and surface properties of both the elemental components as well as the carbide phases, in excellent accordance with DFT calculations and experiments. Using our machine-learnt BOP potential, we performed large-scale molecular dynamics simulations to investigate the effect of metal/carbon concentration on the structure and mechanical properties of porous architectures obtained via self-assembly of cobalt nanoparticles and fullerene molecules. Such porous structures have implications in flexible electronics, where materials with high electrical conductivity and low elastic stiffness are desired. Using unsupervised machine learning (clustering), we identify the pore structure, pore-distribution, and metallic conduction pathways in self-assembled structures at different C/Co ratios. We find that as the C/Co ratio increases, the connectivity between the Co nanoparticles becomes limited, likely resulting in low electrical conductivity; on the other hand, such C-rich hybrid structures are highly flexible (i.e., low stiffness). The BOP model developed in this work is a valuable tool to investigate atomic scale processes, structure-property relationships, and temperature/pressure response of Co-C systems, as well as design organic-inorganic hybrid structures with a desired set of properties. read less NOT USED (high confidence) A. Galashev and K. Ivanichkina, “Computational study of the properties of silicon thin films on graphite,” Russian Journal of Physical Chemistry A. 2017. link Times cited: 17 NOT USED (high confidence) Z. Fthenakis, G. Kalosakas, G. D. Chatzidakis, C. Galiotis, K. Papagelis, and N. Lathiotakis, “Atomistic potential for graphene and other sp2 carbon systems.,” Physical chemistry chemical physics : PCCP. 2017. link Times cited: 9 Abstract: We introduce a torsional force field for sp2 carbon to augme… read moreAbstract: We introduce a torsional force field for sp2 carbon to augment an in-plane atomistic potential of a previous work [G. Kalosakas et al., J. Appl. Phys., 2013, 113, 134307] so that it is applicable to out-of-plane deformations of graphene and related carbon materials. The introduced force field is fit to reproduce density-functional-theory calculation data of appropriately chosen structures. The aim is to create a force field that is as simple as possible so it can be efficient for large scale atomistic simulations of various sp2 carbon structures without significant loss of accuracy. We show that the complete proposed potential reproduces characteristic properties of fullerenes and carbon nanotubes. In addition, it reproduces very accurately the out-of-plane acoustic and optical modes of graphene's phonon dispersion as well as all phonons with frequencies up to 1000 cm-1. read less NOT USED (high confidence) J. Rafols-Rib’e et al., “Evidence of thermal transport anisotropy in stable glasses of vapor deposited organic molecules,” Physical Review Materials. 2017. link Times cited: 13 Abstract: Vapour-deposited organic glasses are currently in use in man… read moreAbstract: Vapour-deposited organic glasses are currently in use in many optoelectronic devices. Their operation temperature is limited by the glass transition temperature of the organic layers and thermal management strategies become increasingly important to improve the lifetime of the device. Here we report the unusual finding that molecular orientation heavily influences heat flow propagation in glassy films of small molecule organic semiconductors. The thermal conductivity of vapour-deposited thin-film semiconductor glasses is anisotropic and controlled by the deposition temperature. We compare our data with extensive molecular dynamics simulations to disentangle the role of density and molecular orientation on heat propagation. Simulations do support the view that thermal transport along the backbone of the organic molecule is strongly preferred with respect to the perpendicular direction. This is due to the anisotropy of the molecular interaction strength that limit the transport of atomic vibrations. This approach could be used in future developments to implement small molecule glassy films in thermoelectric or other organic electronic devices. read less NOT USED (high confidence) S. Mei and I. Knezevic, “Thermal conductivity of ternary III-V semiconductor alloys: The role of mass difference and long-range order,” arXiv: Materials Science. 2017. link Times cited: 6 Abstract: Thermal transport in bulk ternary III-V arsenide (III-As) se… read moreAbstract: Thermal transport in bulk ternary III-V arsenide (III-As) semiconductor alloys was investigated using equilibrium molecular dynamics with optimized Albe-Tersoff empirical interatomic potentials. Existing potentials for binary AlAs, GaAs, and InAs were optimized to obtain accurate phonon dispersions and temperature-dependent thermal conductivity. Calculations of thermal transport in ternary III-Vs commonly employ the virtual-crystal approximation (VCA), where the structure is assumed to be a random alloy and all group-III atoms (cations) are treated as if they have an effective weighted-average mass. Here, we showed that is critical to treat atomic masses explicitly, and that the thermal conductivity obtained with explicit atomic masses differs considerably from the value obtained with the average VCA cation mass. The larger the difference between the cation masses, the poorer the VCA prediction for thermal conductivity. The random-alloy assumption in the VCA is also challenged, because X-ray diffraction and transmission electron microscopy show order in InGaAs, InAlAs, and GaAlAs epi-layers. We calculated thermal conductivity for three common types of order [CuPt-B, CuAu-I, and triple-period-A (TPA)] and showed that the experimental results for In$_{0.53}$Ga$_{0.47}$As and In$_{0.52}$Al$_{0.48}$As, which are lattice matched to the InP substrate, can be reproduced in molecular dynamics simulation with 2% and 8% of random disorder, respectively. Based on our results, thermal transport in ternary III-As alloys appears to be governed by the competition between mass-difference scattering, which is much more pronounced than the VCA suggests, and the long-range order that these alloys support. read less NOT USED (high confidence) M. Thompson et al., “An Atomistic Carbide-Derived Carbon Model Generated Using ReaxFF-Based Quenched Molecular Dynamics.” 2017. link Times cited: 21 Abstract: We report a novel atomistic model of carbide-derived carbons… read moreAbstract: We report a novel atomistic model of carbide-derived carbons (CDCs), which are nanoporous carbons with high specific surface areas, synthesis-dependent degrees of graphitization, and well-ordered, tunable porosities. These properties make CDCs viable substrates in several energy-relevant applications, such as gas storage media, electrochemical capacitors, and catalytic supports. These materials are heterogenous, non-ideal structures and include several important parameters that govern their performance. Therefore, a realistic model of the CDC structure is needed in order to study these systems and their nanoscale and macroscale properties with molecular simulation. We report the use of the ReaxFF reactive force field in a quenched molecular dynamics routine to generate atomistic CDC models. The pair distribution function, pore size distribution, and adsorptive properties of this model are reported and corroborated with experimental data. Simulations demonstrate that compressing the system after quenching changes the pore size distribution to better match the experimental target. Ring size distributions of this model demonstrate the prevalence of non-hexagonal carbon rings in CDCs. These effects may contrast the properties of CDCs against those of activated carbons with similar pore size distributions and explain higher energy densities of CDC-based supercapacitors. read less NOT USED (high confidence) Y. Gao, X. Zhang, Y. Zhou, and M. Hu, “Giant reduction in thermal conductivity of extended type-I silicon clathrates and prominent thermal effect of 6d guest Wyckoff positions,” Journal of Materials Chemistry C. 2017. link Times cited: 12 Abstract: Clathrates, which consist of a large polyhedral cage framewo… read moreAbstract: Clathrates, which consist of a large polyhedral cage framework encapsulating guest atoms, exhibit exceptional properties such as those of high-performance thermoelectrics due to the weak electrostatic interactions between the guest atoms and the host. In this study, by performing Green–Kubo equilibrium molecular dynamics simulation, we calculate the lattice thermal conductivity (TC) of the extended type-I clathrates (Six and Ba8Six, x = 46, 230 and 644). The extension of the cages has a huge reduction effect on the TC of clathrates, e.g. the TC of Si644 (i.e. extended type-I clathrates) is five-fold lower than that of Si46 (i.e. basic type-I clathrates). By examining the phonon behaviors, we identify that the mechanism originates from the enhanced localization of phonons in the extended cages. Furthermore, we discover that the different Wyckoff positions of the guest atoms also impose a tremendously different effect on the TC of clathrates, which has never been reported before. By introducing an isotope of barium atoms, it is interesting to find that the model with this isotope at the 6d Wyckoff position expresses much lower TC than that of the isotope at the 2a position (with a reduction of 30–40%). Combined with the phonon spectral energy density analysis, it is observed that the introduction of the isotope at the 6d position will lead to the reduction of the phonon group velocities of low-frequency phonons and the presence of new phonon scattering channels and anisotropic anharmonicity. These results unambiguously demonstrate that the isotope at the 6d Wyckoff position in type-I clathrates has much stronger effect on TC reduction than that at the 2a position and it will play more important role in the application of clathrate-based nanomaterials in the field of thermoelectricity. Our results indicate that the extension of the cages and the increased isotope concentration at the 6d Wyckoff position are two effective methods to reduce the TC of type-I clathrates and improve the thermoelectric performance. Our investigation also provides an important guidance to further construct new types of silicon clathrates for the relevant thermoelectric applications. read less NOT USED (high confidence) Y. Joko, R. Sasaki, and K. Shintani, “Dynamic encapsulation of corannulene molecules into a single-walled carbon nanotube.,” Physical chemistry chemical physics : PCCP. 2017. link Times cited: 3 Abstract: The morphology of corannulene molecules encapsulated in a si… read moreAbstract: The morphology of corannulene molecules encapsulated in a single-walled carbon nanotube (SWCNT) is addressed using atomistic simulations. Firstly, dynamic simulation (DS) of encapsulation of corannulene molecules into a SWCNT is performed using a molecular dynamics (MD) method. It is revealed that corannulene molecules encapsulated in a SWCNT tend to form concave-concave (CC) dimers, and these dimers make stacks tilting against the SWCNT axis or take an arrangement such that their convex surfaces face the inner wall of the SWCNT. This tendency arises from the fact that the van der Waals interactions between the convex surfaces of the corannulene molecules and the inner wall of the SWCNT dominate in their dynamic encapsulation into the SWCNT, and CC dimers are favored based on the energetics. Next, conjugate gradient (CG) energy minimizations starting from two kinds of initial arrangement of corannulene molecules in a SWCNT, concave-convex (CV) and CC/convex-convex (VV) arrangements, are performed. The CG energy minimizations confirm the result of DS that CC dimers are the structural motif of corannulene molecules in a SWCNT. From the final configurations of both the simulations, the tilt angles and intermolecular distances of the stacked molecules are calculated. With increasing the SWCNT diameter, the tilt angles decrease while the intermolecular distances remain almost constant. The tilt angles of the stacked corannulene molecules are approximately expressed by a semi-analytical formula which is derived on the basis of a geometrical constraint condition. read less NOT USED (high confidence) P. Rowe, G. Csányi, D. Alfé, and A. Michaelides, “Development of a machine learning potential for graphene,” Physical Review B. 2017. link Times cited: 120 Abstract: © 2018 American Physical Society. We present an accurate int… read moreAbstract: © 2018 American Physical Society. We present an accurate interatomic potential for graphene, constructed using the Gaussian approximation potential (GAP) machine learning methodology. This GAP model obtains a faithful representation of a density functional theory (DFT) potential energy surface, facilitating highly accurate (approaching the accuracy of ab initio methods) molecular dynamics simulations. This is achieved at a computational cost which is orders of magnitude lower than that of comparable calculations which directly invoke electronic structure methods. We evaluate the accuracy of our machine learning model alongside that of a number of popular empirical and bond-order potentials, using both experimental and ab initio data as references. We find that whilst significant discrepancies exist between the empirical interatomic potentials and the reference data - and amongst the empirical potentials themselves - the machine learning model introduced here provides exemplary performance in all of the tested areas. The calculated properties include: graphene phonon dispersion curves at 0 K (which we predict with sub-meV accuracy), phonon spectra at finite temperature, in-plane thermal expansion up to 2500 K as compared to NPT ab initio molecular dynamics simulations and a comparison of the thermally induced dispersion of graphene Raman bands to experimental observations. We have made our potential freely available online at [http://www.libatoms.org]. read less NOT USED (high confidence) R. Ranganathan, Y. Shi, and P. Keblinski, “Commonalities in frequency-dependent viscoelastic damping in glasses in the MHz to THz regime,” Journal of Applied Physics. 2017. link Times cited: 10 Abstract: We use non-equilibrium molecular dynamics oscillatory shear … read moreAbstract: We use non-equilibrium molecular dynamics oscillatory shear simulations to study frequency-dependent viscoelastic damping spanning nearly six decades in frequency range (MHz to THz), in a wide range of model glasses including binary glasses such as Cu-Zr metallic glass (MG), Wahnstrom glass and amorphous silica, and unary glasses, namely, Dzugutov glass and amorphous silicon. First, for the Cu-Zr MG, we elucidate the role of quench rate, number of shear cycles, shear amplitude, and shear temperature on the damping characteristics. We observe striking commonalities in damping characteristics for all glasses studied—(i) a peak in the loss modulus in the high-frequency regime (∼THz) and (ii) persistent damping in the low-frequency regime (extending down to 10 s of MHz). The high-frequency peak is seen to overlap with the range of natural vibrational frequencies for each glass, and arises from coupling between the excited harmonic vibrational modes. On the other hand, persistent damping at intermediate and lo... read less NOT USED (high confidence) N. Kamanina, “CARBON STRUCTURES AS EFFECTIVE MODIFIERS OF THE MATERIALS’ BASIC PROPERTIES.” 2017. link Times cited: 2 Abstract: Because of the unique energetic, refractive and photoconduct… read moreAbstract: Because of the unique energetic, refractive and photoconductive characteristics of effective nano-objects, especially carbon nanotubes, the modification of optical properties of the organic and inorganic materials can be considered as the preferable one via the use of the nanostructuration process. Emphasis has been given to the incorporation of nanoobjects directly in the materials’ body and on their surface. Under the conditions of a surface treatment of the inorganic structures, an IR-laser at the wavelength of 10.6 micrometers was used to orientate carbon nanotubes deposited in the electric field of 100-600 V×cm -1 . Dramatic spectral and mechanical parameters changes have been found. Refractive features of the nanostructured organics have been studied via applying the second harmonic of the pulsed Nd-laser at different spatial frequencies and under the nanoparticles sensitization doping such as fullerenes, carbon nanotubes, shungites, quantum dots, and graphenes. A drastically obtained laser-induced refractive index has been established. A prediction has been proposed to extend the area of the application of the systems considered. read less NOT USED (high confidence) A. Giri and P. Hopkins, “Role of interfacial mode coupling of optical phonons on thermal boundary conductance,” Scientific Reports. 2017. link Times cited: 15 NOT USED (high confidence) V. Lykah, N. Dyakonenko, A. V. Sinelnik, V. Bilozertseva, and I. A. Korzh, “Clusters and boundaries in chalcogenide amorphous films,” 2017 IEEE 7th International Conference Nanomaterials: Application & Properties (NAP). 2017. link Times cited: 0 Abstract: The results of experimental and theoretical investigation of… read moreAbstract: The results of experimental and theoretical investigation of thin chalcogenide films are presented. Transmission electron microscopy demonstrated amorphous cluster structure at nanostructure level. The order parameters (bond angle and interatomic distance) are introduced. Cluster boundaries in terms of the order parameters have been obtained and analyzed. read less NOT USED (high confidence) F. Lehnert and S. G. Mayr, “Nanoporous amorphous Ge-Si alloys - unraveling the physics behind ion beam induced morphogenesis.,” Physical chemistry chemical physics : PCCP. 2017. link Times cited: 2 Abstract: Despite a high technical relevance and 35 years of observati… read moreAbstract: Despite a high technical relevance and 35 years of observation, self-organized morphogenesis of nanoporous sponge-like amorphous structures during exposure of selected covalent materials to energetic ions is still insufficiently understood. Due to the presence and absence of these effects in amorphous Ge and Si, respectively, the Ge-Si alloy system constitutes an ideal testbed to track down the underlying physics at the atomic scale. This is realized within the present study by a combination of tailored experiments and extensive molecular dynamics computer modeling. The swelling capabilities of a variety of interaction potentials for the Ge-Si system and its elemental constituents are scrutinized with respect to the experimental observations and related to relevant physical properties of the model systems. This allows to identify defect kinetics in combination with a moderate radiation induced fluidity as key ingredients for nanopore morphogenesis. Cast in a simple quantitative model, it enables to account for both experimental as well as computational results, thus paving the way for a design by understanding approach in synthesis. read less NOT USED (high confidence) R. Kumar and A. Parashar, “Dislocation assisted crack healing in h-BN nanosheets.,” Physical chemistry chemical physics : PCCP. 2017. link Times cited: 18 Abstract: Large size h-BN nanosheets are usually polycrystalline in na… read moreAbstract: Large size h-BN nanosheets are usually polycrystalline in nature and contain different types of grain boundaries. The low angle grain boundaries are usually referred as dislocations. The interaction of dislocations with the defects present in materials may affect the properties of materials. The aim of the current atomistic simulations was to study the effects of 5|7 dislocations on the mode-I fracture toughness of h-BN nanosheets. Molecular dynamics-based simulations were performed with different sets of geometrical configurations of dislocations in conjunction with centrally embedded cracks in h-BN nanosheets. Our results predicted an excellent improvement in fracture toughness values that range from 11% to 74% for h-BN nanosheets in the presence of defects. The improvement in the fracture toughness of h-BN nanosheets was attributed to the interaction of dislocation and crack stress fields. Considering the bright scope of h-BN nanosheets as a substrate in graphene-based nanodevices and as filler in nanocomposites, our study may be helpful for further technological developments. read less NOT USED (high confidence) D.-T. Nguyen, “THE SIZE EFFECT IN MECHANICS PROPERTIES OF BORON NITRIDE NANOTUBE UNDER TENSION,” Vietnam Journal of Science and Technology. 2017. link Times cited: 5 Abstract: This work aimed at investigating the mechanical pro pe ties … read moreAbstract: This work aimed at investigating the mechanical pro pe ties of boron nitride nanotubes (BN-NTs) under uniaxial tension using atomic finite el ment method with Tersoff potential. The zigzag and armchair nanotubes with different length and diameter are considered for researching effect on mechanical behavior of BN-NTs. It is foun d that Young’s modulus of BN-NTs is independent of the tubular length, but slightly inc reases when the diameter goes rise. At the given strain, axial stress in the armchair tubes is higher than that in the zigzag ones. This paper will provide useful information about the mechanica l properties and failure behaviors of BNNTs for their applications. read less NOT USED (high confidence) Y. Han et al., “Sub-nanometre channels embedded in two-dimensional materials.,” Nature materials. 2017. link Times cited: 44 NOT USED (high confidence) S. Sahmani and A. Fattahi, “Development of efficient size-dependent plate models for axial buckling of single-layered graphene nanosheets using molecular dynamics simulation,” Microsystem Technologies. 2017. link Times cited: 31 NOT USED (high confidence) M. Raya-Moreno, H. Aramberri, J. A. Seijas-Bellido, X. Cartoixà, and R. Rurali, “Thermal conductivity of hexagonal Si and hexagonal Si nanowires from first-principles,” Applied Physics Letters. 2017. link Times cited: 21 Abstract: We calculate the thermal conductivity, κ, of the recently sy… read moreAbstract: We calculate the thermal conductivity, κ, of the recently synthesized hexagonal diamond (lonsdaleite) Si using first-principles calculations and solving the Boltzmann Transport Equation. We find values of κ which are around 40% lower than in the common cubic diamond polytype of Si. The trend is similar for [111] Si nanowires, with reductions of the thermal conductivity that are even larger than in the bulk in some diameter range. The Raman active modes are identified, and the role of mid-frequency optical phonons that arise as a consequence of the reduced symmetry of the hexagonal lattice is discussed. We also show briefly that popular classic potentials used in molecular dynamics might not be suited to describe hexagonal polytypes, discussing the case of the Tersoff potential. read less NOT USED (high confidence) E. Lee and T. Luo, “The role of optical phonons in intermediate layer-mediated thermal transport across solid interfaces.,” Physical chemistry chemical physics : PCCP. 2017. link Times cited: 13 Abstract: Thermal transport across solid interfaces plays important ro… read moreAbstract: Thermal transport across solid interfaces plays important roles in many applications, especially in the thermal management of modern power electronics. In this study, we use non-equilibrium MD (NEMD) simulations to systematically study a model SiC/GaN interface, which is an important interface in GaN-based power electronics, mated by different intermediate layers (ILs) with the focus on how the atomic masses of the ILs influence the overall thermal conductance. To isolate the mass effect, the Tersoff potential with the same parameters is used to approximate the interatomic interactions between all atoms, with the only differences between materials being their atomic masses. The NEMD results show that the thermal boundary conductance (TBC) of IL-mated interfaces depends not only on the total primitive cell mass of the IL but also on the relative masses of the atoms within the unit cell. By analyzing the vibrational power spectra (VPS) of SiC, IL, and GaN, it is found that the optical phonons play important roles in thermal transport across the solid/solid interfaces. There is an optimal mass ratio of the atoms in the unit cell of the IL that can maximize the overlap of IL optical phonon VPS with those of SiC and GaN. Furthermore, the atomic masses of a number of III-V semiconductor compounds are studied for the ILs. It is shown that when only considering the mass effect, in the classical limit, AlN will be the best IL to enhance thermal transport across SiC/GaN interfaces with an improvement of as much as 27% over that of a pristine SiC/GaN interface. Despite the known limitation of the model (e.g., absence of strain and quantum effects), the results from this work may still provide some useful information for the design of ILs to improve thermal transport across solid/solid interfaces. read less NOT USED (high confidence) A. Rohskopf, H. Seyf, K. Gordiz, T. Tadano, and A. Henry, “Empirical interatomic potentials optimized for phonon properties,” npj Computational Materials. 2017. link Times cited: 35 NOT USED (high confidence) F. Gayk, J. Ehrens, T. Heitmann, P. Vorndamme, A. Mrugalla, and J. Schnack, “Young’s moduli of carbon materials investigated by various classical molecular dynamics schemes,” Physica E-low-dimensional Systems & Nanostructures. 2017. link Times cited: 16 NOT USED (high confidence) M. M. M. Hossain et al., “Figure of merit analysis of nanostructured thermoelectric materials at room temperature,” 2017 IEEE 17th International Conference on Nanotechnology (IEEE-NANO). 2017. link Times cited: 1 Abstract: In this paper, we mainly focused on analyzing the thermoelec… read moreAbstract: In this paper, we mainly focused on analyzing the thermoelectric property i.e. figure of merit of different nanostructured materials in room temperature (300–310 K). Here we studied the transition-metal dichalcogenides, particularly Molybdenum Disulfide (MoS2); Metal Oxides, specifically Zinc Oxide (ZnO); and conventional semiconductor materials, i.e. n-type and p-type Silicon (Si) and Silicon Germanium (SiGe). At first, we calculated the electrical conductance (Ge), by using electronic density functional theory (DFT). Similarly, we calculated the thermal conductance (κ) using Tersoff empirical potential (TEP) model. With these calculated values of Ge and κ and the Seebeck coefficient (S), we calculated the figure of merit (ZT) at different room temperatures. The main findings of our research were the increased ZT of MoS2, which is slightly larger than p-type Si while, 2∼3 times larger than ZnO and 100∼103 times larger than conventionally used SiGe and n-type Si at room temperatures. We have further investigated a thermoelectric generator (TEG) device with these materials to validate our result. read less NOT USED (high confidence) A. Stepanov and D. Tetelbaum, “Molecular dynamics simulation of the penetration of silicon by hypersonic waves generated in native silicon oxide under irradiation,” Journal of Surface Investigation: X-ray, Synchrotron and Neutron Techniques. 2017. link Times cited: 3 NOT USED (high confidence) T. Han, F. Scarpa, and N. Allan, “Super stretchable hexagonal boron nitride Kirigami,” Thin Solid Films. 2017. link Times cited: 20 NOT USED (high confidence) V. Nguyen, “The Buckling Behavior of Boron Nitride Nanotubes under Bending: An Atomistic Study,” Journal of environmental science & engineering. 2017. link Times cited: 0 Abstract: In this paper, the buckling behavior of zigzag BN (Boron Nit… read moreAbstract: In this paper, the buckling behavior of zigzag BN (Boron Nitride) nanotubes under bending is studied through molecular dynamics finite element method with Tersoff potential. The tube with namely (15, 0) BN zigzag tube is investigated. The critical bending buckling angle, moment and curvature are studied and examined with respect to the tube length-diameter ratios from 5 to 30. Effects of a SW (Stone-Wales) defect in the middle tube on the bending behavior are also discussed. The results show that the tube length affects significantly the bending behavior of these tubes. All tubes exhibit brittle fracture under bending. The buckling takes place at the middle in the compressive side of these tubes. These results are important information on the buckling behaviors of pristine and Stone-Wales BN nanotubes, which will be useful for their future applications. read less NOT USED (high confidence) M. L. Nietiadi et al., “The bouncing threshold in silica nanograin collisions.,” Physical chemistry chemical physics : PCCP. 2017. link Times cited: 17 Abstract: Using molecular dynamics simulations, we study collisions be… read moreAbstract: Using molecular dynamics simulations, we study collisions between amorphous silica nanoparticles. Our silica model contains uncontaminated surfaces, that is, the effect of surface hydroxylation or of adsorbed water layers is excluded. For central collisions, we characterize the boundary between sticking and bouncing collisions as a function of impact velocity and particle size and quantify the coefficient of restitution. We show that the traditional Johnson-Kendall-Roberts (JKR) model provides a valid description of the ingoing trajectory of two grains up to the moment of maximum compression. The distance of closest approach is slightly underestimated by the JKR model, due to the appearance of plasticity in the grains, which shows up in the form of localized shear transformation zones. The JKR model strongly underestimates the contact radius and the collision duration during the outgoing trajectory, evidencing that the breaking of covalent bonds during grain separation is not well described by this model. The adhesive neck formed between the two grains finally collapses while creating narrow filaments joining the grains, which eventually tear. read less NOT USED (high confidence) H. Xie, X. Gu, and H. Bao, “Effect of the accuracy of interatomic force constants on the prediction of lattice thermal conductivity,” Computational Materials Science. 2017. link Times cited: 16 NOT USED (high confidence) C. Davini, A. Favata, and R. Paroni, “A REBO-Potential-Based Model for Graphene Bending by $Γ$Γ-Convergence,” Archive for Rational Mechanics and Analysis. 2017. link Times cited: 4 NOT USED (high confidence) J. Shi et al., “Influence of normal load on the three-body abrasion behaviour of monocrystalline silicon with ellipsoidal particle,” RSC Advances. 2017. link Times cited: 25 Abstract: Currently, monocrystalline silicon has been widely applied i… read moreAbstract: Currently, monocrystalline silicon has been widely applied in micro-electro-mechanical systems (MEMSs). It is of importance to reveal the wear behavior of the MEMS and evaluate the planarization of silicon surface in chemical mechanical polishing (CMP). In this study, molecular dynamics simulation was used to investigate the nano three-body abrasion of monocrystalline silicon with a diamond ellipsoidal particle sandwiched between two silicon specimens. The normal load acting on the ellipsoidal particle was varied from 80 nN to 240 nN. Results indicate that the movement pattern of the particle changes from rolling to sliding when the normal load becomes greater than 160 nN. Using the criterion of particle movement pattern by comparing the value of e/h and coefficient of friction, the particle movement pattern can be accurately predicted. The evolution of force in the abrasion process depicts both friction force and normal load fluctuations in sinusoid-like curve for the rolling ellipsoidal particles, whereas the front cutting of particle results in an increase in the friction force, making it greater than the normal force for sliding particles under high velocity. The plastic deformation of monocrystalline silicon is attributed to the phase transformation, which is clearly impacted by the movement pattern of the particle. The rolling of the particle causes substrate deformation with periodical inhomogeneous characteristics, while sliding helps produce a high-quality surface and improves efficiency in the CMP process. read less NOT USED (high confidence) S. Ambrogio et al., “Modeling resistive switching materials and devices across scales,” Journal of Electroceramics. 2017. link Times cited: 18 NOT USED (high confidence) S. Chavoshi, S. Xu, and S. Goel, “Addressing the discrepancy of finding the equilibrium melting point of silicon using molecular dynamics simulations,” Proceedings of the Royal Society A: Mathematical, Physical and Engineering Sciences. 2017. link Times cited: 36 Abstract: We performed molecular dynamics simulations to study the equ… read moreAbstract: We performed molecular dynamics simulations to study the equilibrium melting point of silicon using (i) the solid–liquid coexistence method and (ii) the Gibbs free energy technique, and compared our novel results with the previously published results obtained from the Monte Carlo (MC) void-nucleated melting method based on the Tersoff-ARK interatomic potential (Agrawal et al. Phys. Rev. B 72, 125206. (doi:10.1103/PhysRevB.72.125206)). Considerable discrepancy was observed (approx. 20%) between the former two methods and the MC void-nucleated melting result, leading us to question the applicability of the empirical MC void-nucleated melting method to study a wide range of atomic and molecular systems. A wider impact of the study is that it highlights the bottleneck of the Tersoff-ARK potential in correctly estimating the melting point of silicon. read less NOT USED (high confidence) Y. Furukawa and Y. Matsushita, “Analysis of single and composite structural defects in pure amorphous silicon: a first-principles study.” 2017. link Times cited: 3 NOT USED (high confidence) P. Lin, J. L. Gomez-Ballesteros, J. Burgos, P. Balbuena, B. Natarajan, and R. Sharma, “Direct evidence of atomic-scale structural fluctuations in catalyst nanoparticles.,” Journal of catalysis. 2017. link Times cited: 31 NOT USED (high confidence) H. Wang and M. Daw, “Anharmonicity of vibrational modes in fullerenes,” arXiv: Mesoscale and Nanoscale Physics. 2017. link Times cited: 6 NOT USED (high confidence) H. Wang, D. Dickel, and M. Daw, “Theoretical treatment of anharmonicity of vibrational modes of single-walled carbon nanotubes,” arXiv: Mesoscale and Nanoscale Physics. 2017. link Times cited: 3 Abstract: We report a computational study, using the "moments met… read moreAbstract: We report a computational study, using the "moments method" [Y. Gao and M. Daw, Modelling Simul. Mater. Sci. Eng. 23 045002 (2015)], of the anharmonicity of the vibrational modes of single-walled carbon nanotubes. We find that modes with displacements largely within the wall are more anharmonic than modes with dominantly radial character, except for a set of modes that are related to the radial breathing mode which are the most anharmonic of all. We also find that periodicity of the calculation along the tube length does not strongly affect the anharmonicity of the modes, but that the tubes with larger diameter show more anharmonicity. Comparison is made with available experiments and other calculations. read less NOT USED (high confidence) O. Rakhmanova and A. Galashev, “Motion of a lithium ion over a graphene–silicene channel: A computer model,” Russian Journal of Physical Chemistry A. 2017. link Times cited: 17 NOT USED (high confidence) D. Gobrecht, S. Cristallo, L. Piersanti, and S. Bromley, “Nucleation of Small Silicon Carbide Dust Clusters in AGB Stars,” The Astrophysical Journal. 2017. link Times cited: 23 Abstract: Silicon carbide (SiC) grains are a major dust component in c… read moreAbstract: Silicon carbide (SiC) grains are a major dust component in carbon-rich asymptotic giant branch stars. However, the formation pathways of these grains are not fully understood. We calculate ground states and energetically low-lying structures of (SiC)n, n = 1, 16 clusters by means of simulated annealing and Monte Carlo simulations of seed structures and subsequent quantum-mechanical calculations on the density functional level of theory. We derive the infrared (IR) spectra of these clusters and compare the IR signatures to observational and laboratory data. According to energetic considerations, we evaluate the viability of SiC cluster growth at several densities and temperatures, characterizing various locations and evolutionary states in circumstellar envelopes. We discover new, energetically low-lying structures for Si4C4, Si5C5, Si15C15, and Si16C16 and new ground states for Si10C10 and Si15C15. The clusters with carbon-segregated substructures tend to be more stable by 4–9 eV than their bulk-like isomers with alternating Si–C bonds. However, we find ground states with cage geometries resembling buckminsterfullerens (“bucky-like”) for Si12C12 and Si16C16 and low-lying stable cage structures for n ≥ 12. The latter findings thus indicate a regime of cluster sizes that differ from small clusters as well as from large-scale crystals. Thus—and owing to their stability and geometry—the latter clusters may mark a transition from a quantum-confined cluster regime to a crystalline, solid bulk-material. The calculated vibrational IR spectra of the ground-state SiC clusters show significant emission. They include the 10–13 μm wavelength range and the 11.3 μm feature inferred from laboratory measurements and observations, respectively, although the overall intensities are rather low. read less NOT USED (high confidence) C. Si, X.-dong Wang, Z. Fan, Z.-hai Feng, and B. Cao, “Impacts of potential models on calculating the thermal conductivity of graphene using non-equilibrium molecular dynamics simulations,” International Journal of Heat and Mass Transfer. 2017. link Times cited: 64 NOT USED (high confidence) G. P. P. Pun and Y. Mishin, “Optimized interatomic potential for silicon and its application to thermal stability of silicene,” Physical Review B. 2017. link Times cited: 35 Abstract: An optimized interatomic potential has been constructed for … read moreAbstract: An optimized interatomic potential has been constructed for silicon using a modified Tersoff model. The potential reproduces a wide range of properties of Si and improves over existing potentials with respect to point defect structures and energies, surface energies and reconstructions, thermal expansion, melting temperature, and other properties. The proposed potential is compared with three other potentials from the literature. The potentials demonstrate reasonable agreement with first-principles binding energies of small Si clusters as well as single-layer and bilayer silicenes. The four potentials are used to evaluate the thermal stability of free-standing silicenes in the form of nanoribbons, nanoflakes, and nanotubes. While single-layer silicene is found to be mechanically stable at zero Kelvin, it is predicted to become unstable and collapse at room temperature. By contrast, the bilayer silicene demonstrates a larger bending rigidity and remains stable at and even above room temperature. The results suggest that bilayer silicene might exist in a free-standing form at ambient conditions. read less NOT USED (high confidence) J. Zhang and S. Meguid, “Piezoelectricity of 2D nanomaterials: characterization, properties, and applications,” Semiconductor Science and Technology. 2017. link Times cited: 46 Abstract: The discovery of piezoelectricity in 2D nanomaterials repres… read moreAbstract: The discovery of piezoelectricity in 2D nanomaterials represents a milestone towards embedding low-dimensional materials into future technologies. This article reviews recent progress in the characterization, properties evaluation, and applications of piezoelectricity of 2D piezoelectric nanomaterials (PNs). To begin, an introduction to the existing 2D PNs, which exhibit a wide range of atomic structures and configurations, is presented. The nanoscale measurements and associated experimental techniques as well as the atomic simulations of the piezoelectric properties of 2D PNs are then summarized. Some of the pertinent parameters, which govern the piezoelectric properties of 2D PNs, are discussed. Furthermore, our article concludes with some potential applications including piezotronics, piezophototronics, and energy harvesting of 2D PNs, which can open the doors to the innovative design of next-generation nanoelectronics and nanodevices. Finally, we highlight perspectives and challenges for the future development of 2D PNs. read less NOT USED (high confidence) R. Kumar and A. Parashar, “Fracture toughness enhancement of h-BN monolayers via hydrogen passivation of a crack edge,” Nanotechnology. 2017. link Times cited: 26 Abstract: Molecular dynamics-based simulations were performed in conju… read moreAbstract: Molecular dynamics-based simulations were performed in conjunction with reactive force-field potential parameters to investigate the effect of crack-edge passivation via hydrogenation on the fracture properties of h-BN nanosheets. In semi-hydrogenated (H is attached to either B or N) and fully hydrogenated (H is attached to both B and N) crack-edge atoms, three hybridisation states—sp2, sp3 and sp2 + sp3—were considered in the simulations. Significant improvement in the fracture toughness of h-BN nanosheets was predicted with semi- and fully hydrogenated crack-edge atoms. An overall improvement in fracture toughness of h-BN in the range of 16%–23% was estimated with the sp3 or sp2 + sp3 hybridisation state of crack-edge atoms. This significant shift in the fracture toughness of h-BN nanosheets was attributed to lowered crack-edge energy, a stress-relieving mechanism and blunting of the crack tip. Semi-hydrogenated crack-edge atoms with hydrogen attached only to N atoms have shown a negative response in terms of fracture toughness. read less NOT USED (high confidence) D. Taylor, “Convergence acceleration of molecular dynamics methods for shocked materials using velocity scaling,” Molecular Physics. 2017. link Times cited: 2 Abstract: ABSTRACT In this work, a convergence acceleration method app… read moreAbstract: ABSTRACT In this work, a convergence acceleration method applicable to extended system molecular dynamics techniques for shock simulations of materials is presented. The method uses velocity scaling to reduce the instantaneous value of the Rankine–Hugoniot conservation of energy constraint used in extended system molecular dynamics methods to more rapidly drive the system towards a converged Hugoniot state. When used in conjunction with the constant stress Hugoniostat method, the velocity scaled trajectories show faster convergence to the final Hugoniot state with little difference observed in the converged Hugoniot energy, pressure, volume and temperature. A derivation of the scale factor is presented and the performance of the technique is demonstrated using the boron carbide armour ceramic as a test material. It is shown that simulation of boron carbide Hugoniot states, from 5 to 20 GPa, using both a classical Tersoff potential and an ab initio density functional, are more rapidly convergent when the velocity scaling algorithm is applied. The accelerated convergence afforded by the current algorithm enables more rapid determination of Hugoniot states thus reducing the computational demand of such studies when using expensive ab initio or classical potentials. GRAPHICAL ABSTRACT read less NOT USED (high confidence) M.-Q. Le and Y. Umeno, “Fracture of monolayer boronitrene and its interface with graphene,” International Journal of Fracture. 2017. link Times cited: 24 NOT USED (high confidence) D. Kaiser, S. Han, and T. Sinno, “Parametric analysis of mechanically driven compositional patterning in SiGe substrates,” Journal of Applied Physics. 2017. link Times cited: 4 Abstract: A recently demonstrated approach for creating structured com… read moreAbstract: A recently demonstrated approach for creating structured compositional gradients in the near-surface region of SiGe substrates is studied parametrically using a multiresolution coarse-grained lattice kinetic Monte Carlo simulation method. In the “stress patterning” process, a patterned elastic stress field is generated in the SiGe substrate by pressing an array of micro-indenters into it. The stressed substrate is then thermally annealed to drive the atomic diffusion in which the larger Ge atoms are pushed away from the areas of compressive stress. By varying a subset of the parameters that characterize the high-dimensional input space of the process (e.g., indenter spacing, indenter tip shape, and indenter array symmetry) we show that technologically interesting compositional configurations may be readily generated. In particular, we show that it is theoretically possible to generate arrays of well-delineated nanoscale regions of high Ge content surrounded by essentially pure Si. Such configurations may ... read less NOT USED (high confidence) A. Mattoni, A. Filippetti, and C. Caddeo, “Modeling hybrid perovskites by molecular dynamics,” Journal of Physics: Condensed Matter. 2017. link Times cited: 70 Abstract: The topical review describes the recent progress in the mode… read moreAbstract: The topical review describes the recent progress in the modeling of hybrid perovskites by molecular dynamics simulations. Hybrid perovskites and in particular methylammonium lead halide (MAPI) have a tremendous technological relevance representing the fastest-advancing solar material to date. They also represent the paradigm of an organic–inorganic crystalline material with some conceptual peculiarities: an inorganic semiconductor for what concerns the electronic and absorption properties with a hybrid and solution processable organic–inorganic body. After briefly explaining the basic concepts of ab initio and classical molecular dynamics, the model potential recently developed for hybrid perovskites is described together with its physical motivation as a simple ionic model able to reproduce the main dynamical properties of the material. Advantages and limits of the two strategies (either ab initio or classical) are discussed in comparison with the time and length scales (from pico to microsecond scale) necessary to comprehensively study the relevant properties of hybrid perovskites from molecular reorientations to electrocaloric effects. The state-of-the-art of the molecular dynamics modeling of hybrid perovskites is reviewed by focusing on a selection of showcase applications of methylammonium lead halide: molecular cations disorder; temperature evolution of vibrations; thermally activated defects diffusion; thermal transport. We finally discuss the perspectives in the modeling of hybrid perovskites by molecular dynamics. read less NOT USED (high confidence) C. Desgranges, P. Anderson, and J. Delhommelle, “Classical and quantum many-body effects on the critical properties and thermodynamic regularities of silicon,” Journal of Physics: Condensed Matter. 2017. link Times cited: 3 Abstract: Using molecular simulation, we determine the critical proper… read moreAbstract: Using molecular simulation, we determine the critical properties of Si as well as the loci for several remarkable thermodynamic contours spanning the supercritical region of the phase diagram. We consider a classical three-body potential as well as a quantum (tight-binding) many-body model, and determine the loci for the ideality contours, including the Zeno line and the H line of ideal enthalpy. The two strategies (classical or quantum) lead to strongly asymmetric binodals and to critical properties in good agreement with each other. The Zeno and H lines are found to remain linear over a wide temperature interval, despite the changes in electronic structure undergone by the fluid along these contours. We also show that the classical and quantum model yield markedly different results for the parameters defining the H line, the exponents for the power-laws underlying the line of minima for the isothermal enthalpy and for the density required to achieve ideal behavior, most notably for the enthalpy. read less NOT USED (high confidence) J. Kioseoglou, M. Katsikini, K. Termentzidis, I. K. Karakostas, and E. Paloura, “Mechanism and crucial parameters on GaN nanocluster formation in a silica matrix,” Journal of Applied Physics. 2017. link Times cited: 7 Abstract: The formation of wurtzite GaN nanoclusters in an amorphous s… read moreAbstract: The formation of wurtzite GaN nanoclusters in an amorphous silica matrix, via gallium and nitrogen ion implantation and rapid thermal annealing, is identified using Extended X Ray Absorption Fine Structure analysis. The mechanism and the crucial parameters that rule the formation of the nanoclusters are established by the use of molecular dynamics simulations. The dominant structural parameters are found to be the concentration of the silicon and oxygen vacancies that are formed during the implantation and the annealing temperature. It is concluded that annealing at 1400 K and 8% Ga/Si and 12% N/O ratios are needed for the formation of GaN nanoclusters. In addition to that, the GaN nanocluster formation is accomplished only when the vacancy concentrations of silicon and oxygen atoms are equal to 10% and 20%, respectively. Finally, the observation of various snapshots upon an increase of the annealing duration indicates the coalescence of smaller GaN nuclei towards larger ones, designating that the Ostwald... read less NOT USED (high confidence) K. Choudhary, F. Y. Congo, T. Liang, C. Becker, R. Hennig, and F. Tavazza, “Evaluation and comparison of classical interatomic potentials through a user-friendly interactive web-interface,” Scientific Data. 2017. link Times cited: 21 NOT USED (high confidence) Y. Long and J. Chen, “Theoretical Study of the Interfacial Force-Field, Thermodynamic Property, and Heat Stress for Plastic Bonded Explosives,” Journal of Physical Chemistry C. 2017. link Times cited: 12 Abstract: The force-fields across the TATB/(paraffin, fluoropolymer), … read moreAbstract: The force-fields across the TATB/(paraffin, fluoropolymer), RDX/TATB, RDX/graphite and fluoropolymer/graphite interfaces are obtained by first-principles calculations and parameter optimization. Based on them, the composite materials are simulated in atomistic scale, and a set of thermodynamic properties are calculated, including the heat capacity, thermal expansion coefficient, Gruneisen coefficient, isothermal curve, Hugoniot curve, pressure field, and tension field. We find that the thermal expansion coefficient difference across the explosive/additive interface induces interfacial tension in warming process, the interfacial tension induces positive pressure on the explosive particle, and the positive pressure restrains the thermal expansion of the composite material. A physical picture to describe the influence mechanism of the interface effect on the composite property is obtained. read less NOT USED (high confidence) H. Dai and G. Chen, “A molecular dynamics investigation into the mechanisms of material removal and subsurface damage of nanoscale high speed laser-assisted machining,” Molecular Simulation. 2017. link Times cited: 22 Abstract: Molecular dynamics is employed to study the mechanism of mat… read moreAbstract: Molecular dynamics is employed to study the mechanism of material removal and subsurface damage of monocrystalline silicon when it is under a nanoscale high-speed laser-assisted grinding of a diamond tip. Laser-assisted machining (LAM) is that the workpiece is locally heated by an intense laser beam before material removal. The effects of laser moving speed, laser pulse intensity and laser spot radius are thoroughly investigated in terms of atomic trajectories, phase transformation, temperature distribution, grinding temperature, grinding force and friction coefficient. The investigation shows that a higher laser moving speed reduces the subsurface damage and improves the material remove rate because of fewer atoms with five and six coordination atoms and more chips. Besides, both tangential grinding force (Fx) and normal grinding force (Fy) decrease as the laser moving speed increases. The distribution of high-temperature zone strongly depends upon the effect of laser pulse intensity and laser spot radius. Larger laser pulse intensity can make the material more fully softened before being removed. Moreover, as the laser pulse intensity becomes larger, the friction coefficients became smaller, the material remove rate improves and the depth of grinding increases. However, larger laser pulse intensity may result in a larger thermal deformation of workpiece. A larger laser spot radius reduces the grinding depth but increases the width of laser irradiation zone on machined surface. Thus, a suitable laser spot radius can improve the material removal rate. These results indicate that it is possible to control and adjust the laser parameters according to laser moving speed, laser pulse intensity and laser spot radius, and it provides a potential technology to improve a surface integrity and a smoothness of ground surface. read less NOT USED (high confidence) R. Rezaei, C. Deng, M. Shariati, and H. Tavakoli-Anbaran, “The ductility and toughness improvement in metallic glass through the dual effects of graphene interface,” Journal of Materials Research. 2017. link Times cited: 12 Abstract: Bulk metallic glasses own unique mechanical properties such … read moreAbstract: Bulk metallic glasses own unique mechanical properties such as high strength and excellent elastic behavior due to their amorphous atomic structure. Nonetheless, they usually fail catastrophically by shear localization without showing any macroscale plastic deformation under tension and therefore are notoriously brittle. In this study, graphene was proposed as an effective reinforcement to improve the ductility and toughness of metallic glass for possessing a unique combination of strong in-plane strength and weak interbonding with the metal matrix based on molecular dynamics simulations. Both continuous and discontinuous graphene sheets with various configurations and lengths were taken into account. It was found that with proper dispersion of the graphene reinforcements, more than 100% increase in the ductility and more than 150% increase in the toughness can be achieved in the nanocomposites as compared to the monolithic metallic glass of similar size, which was enabled by spreading and delocalizing the plastic shearing deformation in the nanocomposites because of the dual effects of the added graphene. read less NOT USED (high confidence) Z. Tong et al., “Review on FIB-induced damage in diamond materials,” Current Nanoscience. 2016. link Times cited: 5 Abstract: Background: Although various advanced FIB processing methods… read moreAbstract: Background: Although various advanced FIB processing methods for the fabrication of 3D nanostructures have been successfully developed by many researchers, the FIB milling has an unavoidable result in terms of the implantation of ion source materials and the formation of damaged layer at the near surface. Understanding the ion-solid interactions physics provides a unique way to control the FIB produced defects in terms of their shape and location. Methods: We have carefully selected peer-reviewed papers which mainly focusing on the review questions of this paper. A deductive content analysis method was used to analyse the methods, findings and conclusions of these papers. Based on their research methods, we classify their works in different groups. The theory of ion-matter interaction and the previous investigation on ion-induced damage in diamond were reviewed and discussed. Results: The previous research work has provided a systematic analysis of ion-induced damage in diamond. Both experimental and simulation methods have been developed to understand the damage process. The damaged layers created in FIB processing process can significantly degrade/alter the device performance and limit the applications of FIB nanofabrication technique. There are still challenges involved in fabricating large, flat, and uniform TEM samples in undoped non-conductive diamond. Conclusions: The post-facto-observation leaves a gap in understanding the formation process of ioninduced damage, forcing the use of assumptions. In contrast, MD simulations of ion bombardment have shed much light on ion beam mixing for decades. These activities make it an interesting and important task to understand what the fundamental effects of energetic particles on matter are. read less NOT USED (high confidence) O. Mykhailenko, “Комплексоутворення між двошаровими карбоновими нанотрубкамита металоценами за типом «гість-хазяїн».” 2016. link Times cited: 0 Abstract: Complex compounds of various types and nature have been wide… read moreAbstract: Complex compounds of various types and nature have been widely applied in many fields of science and technology. Complex aggregates based on nanostructures such as nanotubes and other coordination compounds, for example, metallocenes, have unique properties, since a combination of their individual characteristics provides for further growing interest to the research in chemistry, physics, electronics, medicine, etc. The initial structure was a (5.5)@(10.10) nanotube (CNT) having 270 carbon atoms. Intercalation of this double-walled carbon nanotubes (DWCNT) assumes placing the intercalate inside the (5.5) CNT, into intertubular space, and its differently oriented sorption on the outer surface of the (10.10) CNT. By employing the methods of MM+, РМ3 and Monte-Carlo, the positioning has been studied of molecules of tricarbonyl(cyclopentadienyl)manganese, monocyclopentadienylferrum(ІІ), bis(cyclopentadienyl)nickel and bis(η 5 -cyclopentadienyl)cobalt in a double-walled (5,5)@(10,10) carbon nanotube depending on intercalate concentration and intercalation temperature. The temperature increase (over ~455–460 K) causes gradual bond ruining followed by extrusion of interwall intercalate. Further temperature increase up to 620–650 K is characterised with intercalate external surface desorption, stabilising the whole systems and keeping the interwall intercalate only. It is necessary to note that the suggested model variant allows to demonstrate the thermodynamic selectivity of physical and chemical sorption-desorption. At lower temperatures there appears physical sorption, its natural feature is most likely to overlap the non-hybridized orbital 3d xy of the metal ions with the π-system of the DWCNT side surface while chemisorption is observed at higher temperatures that is peculiar or π-π interactions of aromatic and quasiaromatic cyclic (heterocyclic) systems. Moreover, simultaneous presence of donor/acceptor feature of the DWCNT’s intertube space as a result of positive and negative Gaussian curvature, makes it possible to regulate orientation of intercalate donor and acceptor edges what allows us to view it as a potential molecular switch. There have been calculated the UV-spectra for (5,5)@(10,10) DWCNT depending on the intercalate concentration as well as an association constant of the systems which makes 26.45 l·mol –1 (for system with ferrocene); 36.2 l·mol –1 (for system with nickelocene); 76.8 l·mol –1 (for system with cobaltocene) and 6.745 l·mol –1 (for system with manganocene). read less NOT USED (high confidence) X. Dong and Y. Shin, “Multiscale Genome Modeling for Predicting the Thermal Conductivity of Silicon Carbide Ceramics,” Journal of the American Ceramic Society. 2016. link Times cited: 11 Abstract: Silicon carbide (SiC) ceramics have been widely used in indu… read moreAbstract: Silicon carbide (SiC) ceramics have been widely used in industry due to its high thermal conductivity. Understanding the relations between the microstructure and the thermal conductivity of SiC ceramics is critical for improving the efficiency of heat removal in heat sink applications. In this paper, a multiscale model is proposed to predict the thermal conductivity of SiC ceramics by bridging atomistic simulations and continuum model via a materials genome model. Interatomic potentials are developed using ab initio calculations to achieve more accurate molecular dynamics (MD) simulations. Interfacial thermal conductivities with various additive compositions are predicted by nonequilibrium MD simulations. A homogenized materials genome model with the calculated interfacial thermal properties is used in a continuum model to predict the effective thermal conductivity of SiC ceramics. The effects of grain size, additive compositions, and temperature are also studied. The good agreement found between prediction results and experimental measurements validates the capabilities of the proposed multiscale genome model in understanding and improving the thermal transport characteristics of SiC ceramics. read less NOT USED (high confidence) R. Hardy, “Atomistic formulas for local properties in systems with many-body interactions.,” The Journal of chemical physics. 2016. link Times cited: 5 Abstract: Atomistic formulas are derived for the local densities and f… read moreAbstract: Atomistic formulas are derived for the local densities and fluxes used in the continuum description of energy and momentum transport. Two general methods for the distribution of potential energy among a system's constituent particles are presented and analyzed. The resulting formulas for the heat flux and stress tensor and the equations for energy and momentum transport are exact consequences of the definitions of the densities and the equations of classical mechanics. The formulas and equations obtained are valid for systems with very general types of many-body interactions. read less NOT USED (high confidence) S. R. Chinnamsetty, M. Griebel, and J. Hamaekers, “An Adaptive Multiscale Approach for Electronic Structure Methods,” Multiscale Model. Simul. 2016. link Times cited: 3 Abstract: In this paper, we introduce a new scheme for the efficient n… read moreAbstract: In this paper, we introduce a new scheme for the efficient numerical treatment of the electronic Schrodinger equation for molecules. It is based on the combination of a many-body expansion, which corresponds to the bond order dissection ANOVA approach introduced in [M. Griebel, J. Hamaekers, and F. Heber, Extraction of Quantifiable Information from Complex Systems, Springer, New York, pp. 211--235; F. Heber, Ph.D. thesis, Intitut fur Numerische Simulation, Rheinische Friedrich-Wilhelms-Universitat Bonn, 2014], with a hierarchy of basis sets of increasing order. Here, the energy is represented as a finite sum of contributions associated to subsets of nuclei and basis sets in a telescoping sum like fashion. Under the assumption of data locality of the electronic density (nearsightedness of electronic matter), the terms of this expansion decay rapidly and higher terms may be neglected. We further extend the approach in a dimension-adaptive fashion to generate quasi-optimal approximations, i.e., a specific tr... read less NOT USED (high confidence) M. Wen, J. Li, P. Brommer, R. Elliott, J. Sethna, and E. Tadmor, “A KIM-compliant potfit for fitting sloppy interatomic potentials: application to the EDIP model for silicon,” Modelling and Simulation in Materials Science and Engineering. 2016. link Times cited: 16 Abstract: Fitted interatomic potentials are widely used in atomistic s… read moreAbstract: Fitted interatomic potentials are widely used in atomistic simulations thanks to their ability to compute the energy and forces on atoms quickly. However, the simulation results crucially depend on the quality of the potential being used. Force matching is a method aimed at constructing reliable and transferable interatomic potentials by matching the forces computed by the potential as closely as possible, with those obtained from first principles calculations. The potfit program is an implementation of the force-matching method that optimizes the potential parameters using a global minimization algorithm followed by a local minimization polish. We extended potfit in two ways. First, we adapted the code to be compliant with the KIM Application Programming Interface (API) standard (part of the Knowledgebase of Interatomic Models project). This makes it possible to use potfit to fit many KIM potential models, not just those prebuilt into the potfit code. Second, we incorporated the geodesic Levenberg–Marquardt (LM) minimization algorithm into potfit as a new local minimization algorithm. The extended potfit was tested by generating a training set using the KIM environment-dependent interatomic potential (EDIP) model for silicon and using potfit to recover the potential parameters from different initial guesses. The results show that EDIP is a ‘sloppy model’ in the sense that its predictions are insensitive to some of its parameters, which makes fitting more difficult. We find that the geodesic LM algorithm is particularly efficient for this case. The extended potfit code is the first step in developing a KIM-based fitting framework for interatomic potentials for bulk and two-dimensional materials. The code is available for download via https://www.potfit.net. read less NOT USED (high confidence) Y. Zhang, Y. Zhu, and M. Li, “Lattice thermal conductivity of boron nitride nanoribbon from molecular dynamics simulation,” Wuhan University Journal of Natural Sciences. 2016. link Times cited: 3 NOT USED (high confidence) P. Zhang, R. Zhu, M. Jiang, Y. Song, D. Zhang, and Y. Cui, “Molecular dynamics study on the thermal conductivity of multiple layers in semiconductor disk laser,” SPIE/COS Photonics Asia. 2016. link Times cited: 0 Abstract: Thermal properties of multiple layers including distributed … read moreAbstract: Thermal properties of multiple layers including distributed Bragg reflector (DBR) and multiple quantum wells (MQWs) used in the semiconductor gain element are crucial for the performance of a semiconductor disk laser (SDL). For the purpose of more reasonable semiconductor wafer design, so to improve the thermal management of SDLs, accurate thermal conductivity value of a DBR is under considerable requirement. By the use of equilibrium molecular dynamics (EMD) method, thermal conductivities of AlAs/GaAs DBRs, which were widely employed in 1μm wavelength SDLs, were calculated, and simulated results were compared with reported data. Influences of the Al composition, and the layer thickness on the thermal conductivities were focused and analyzed. read less NOT USED (high confidence) J. Behler, “Perspective: Machine learning potentials for atomistic simulations.,” The Journal of chemical physics. 2016. link Times cited: 874 Abstract: Nowadays, computer simulations have become a standard tool i… read moreAbstract: Nowadays, computer simulations have become a standard tool in essentially all fields of chemistry, condensed matter physics, and materials science. In order to keep up with state-of-the-art experiments and the ever growing complexity of the investigated problems, there is a constantly increasing need for simulations of more realistic, i.e., larger, model systems with improved accuracy. In many cases, the availability of sufficiently efficient interatomic potentials providing reliable energies and forces has become a serious bottleneck for performing these simulations. To address this problem, currently a paradigm change is taking place in the development of interatomic potentials. Since the early days of computer simulations simplified potentials have been derived using physical approximations whenever the direct application of electronic structure methods has been too demanding. Recent advances in machine learning (ML) now offer an alternative approach for the representation of potential-energy surfaces by fitting large data sets from electronic structure calculations. In this perspective, the central ideas underlying these ML potentials, solved problems and remaining challenges are reviewed along with a discussion of their current applicability and limitations. read less NOT USED (high confidence) M. Korayem, R. N. Hefzabad, A. Homayooni, and H. Aslani, “Molecular dynamics simulation of nanomanipulation based on AFM in liquid ambient,” Applied Physics A. 2016. link Times cited: 6 NOT USED (high confidence) M. H. Korayem, R. N. Hefzabad, A. Homayooni, and H. Aslani, “Molecular dynamics simulation of nanomanipulation based on AFM in liquid ambient,” Applied Physics A. 2016. link Times cited: 0 NOT USED (high confidence) S. Chowdhury and D. Jana, “A theoretical review on electronic, magnetic and optical properties of silicene,” Reports on Progress in Physics. 2016. link Times cited: 153 Abstract: Inspired by the success of graphene, various two dimensional… read moreAbstract: Inspired by the success of graphene, various two dimensional (2D) structures in free standing (FS) (hypothetical) form and on different substrates have been proposed recently. Silicene, a silicon counterpart of graphene, is predicted to possess massless Dirac fermions and to exhibit an experimentally accessible quantum spin Hall effect. Since the effective spin–orbit interaction is quite significant compared to graphene, buckling in silicene opens a gap of 1.55 meV at the Dirac point. This band gap can be further tailored by applying in plane stress, an external electric field, chemical functionalization and defects. In this topical theoretical review, we would like to explore the electronic, magnetic and optical properties, including Raman spectroscopy of various important derivatives of monolayer and bilayer silicene (BLS) with different adatoms (doping). The magnetic properties can be tailored by chemical functionalization, such as hydrogenation and introducing vacancy into the pristine planar silicene. Apart from some universal features of optical absorption present in all these 2D materials, the study on reflectivity modulation with doping (Al and P) concentration in silicene has indicated the emergence of some strong peaks having the robust characteristic of a doped reflective surface for both polarizations of the electromagnetic (EM) field. Besides this, attempts will be made to understand the electronic properties of silicene from some simple tight-binding Hamiltonian. We also point out the importance of shape dependence and optical anisotropy properties in silicene nanodisks and establish that a zigzag trigonal possesses the maximum magnetic moment. We also suggest future directions to be explored to make the synthesis of silicene and its various derivatives viable for verification of theoretical predictions. Although this is a fairly new route, the results obtained so far from experimental and theoretical studies in understanding silicene have shown enough significant promising features to open a new direction in the silicon industry, silicon based nano-structures in spintronics and in opto-electronic devices. read less NOT USED (high confidence) Y. Gong, Z. Zhu, Y. Zhou, and Y. Sun, “Research on the nanometric machining of a single crystal nickel via molecular dynamics simulation,” Science China Technological Sciences. 2016. link Times cited: 13 NOT USED (high confidence) Y. Gong, Z. Zhu, Y. Zhou, and Y. Sun, “Research on the nanometric machining of a single crystal nickel via molecular dynamics simulation,” Science China Technological Sciences. 2016. link Times cited: 0 NOT USED (high confidence) Z. Fan, W. Chen, V. Vierimaa, and A. Harju, “Efficient molecular dynamics simulations with many-body potentials on graphics processing units,” Comput. Phys. Commun. 2016. link Times cited: 116 NOT USED (high confidence) J.-H. Zou, Z.-Q. Ye, and B. Cao, “Phonon thermal properties of graphene from molecular dynamics using different potentials.,” The Journal of chemical physics. 2016. link Times cited: 67 Abstract: Phonon thermal transport in graphene has attracted significa… read moreAbstract: Phonon thermal transport in graphene has attracted significant interest in recent years. Phonon thermal properties of graphene are investigated by molecular dynamics simulations using the Tersoff, Tersoff-2010, REBO, and AIREBO potentials. By calculating the phonon properties and thermal conductivity of graphene, the performance of the potentials is evaluated based on comparisons with experimental data. It shows that the Tersoff-2010 and REBO display better dispersion curves for graphene than the original Tersoff and AIREBO. The Tersoff-2010 correctly provides the Γ point phonon velocities of the LA and TA branches as well as the G peak frequency with a value of 46 THz. In addition, the acoustic phonon relaxation time derived from the Tersoff-2010 satisfies the ideal relation "τ-1 ∝ ν2." It is also found that the Tersoff-2010 provides the highest graphene thermal conductivity among the used potentials, and estimates about 30.0% contribution for flexural phonons to the total thermal conductivity. By comparison, the Tersoff-2010 potential is demonstrated to be the most suitable one to describe the phonon thermal properties of graphene. read less NOT USED (high confidence) J. Chen, B. Wang, and Y. Hu, “Existence Criterion of Low-Dimensional Materials,” arXiv: Materials Science. 2016. link Times cited: 12 NOT USED (high confidence) Y. Long and J. Chen, “The force-field derivation and application of explosive/additive interfaces,” Modelling and Simulation in Materials Science and Engineering. 2016. link Times cited: 2 Abstract: The inter-molecular force-field across RDX/(paraffin, fluoro… read moreAbstract: The inter-molecular force-field across RDX/(paraffin, fluoropolymer) interfaces are derived from first-principles calculated energies under the GGA+vdW functional. Based on the force-field, the polycrystal structures of mixture explosives are obtained, and a set of thermodynamic properties are calculated, including the elastic constants, thermal expansion coefficient, heat capacity, isothermal curve and the Hugoniot curve. The results are in good agreement with the available experiments, and provide a reasonable prediction about the properties of plastic bonded explosives. We find that the thermal expansion coefficient of a multi-component explosive is not only determined by the properties of the components, but is also affected by the thermal stress at the explosive/additive interfaces. read less NOT USED (high confidence) A. Galashev, O. Rakhmanova, and Y. Zaikov, “Defect silicene and graphene as applied to the anode of lithium-ion batteries: Numerical experiment,” Physics of the Solid State. 2016. link Times cited: 15 NOT USED (high confidence) R. Kumar, P. Mertiny, and A. Parashar, “Effects of Different Hydrogenation Regimes on Mechanical Properties of h-BN: A Reactive Force Field Study,” Journal of Physical Chemistry C. 2016. link Times cited: 34 Abstract: This article describes molecular dynamics based simulations,… read moreAbstract: This article describes molecular dynamics based simulations, which were performed to investigate the effects of different hydrogenation regimes on the mechanical properties of boron nitride nanosheets (h-BN). The reaction force field (ReaxFF) was used as the interatomic potential to capture atomistic interactions. Separate atomistic models were developed for pristine, semihydrogenated (hydrogen is attached either to boron or nitrogen) and fully hydrogenated h-BN (hydrogen is attached to both boron and nitrogen). The radial distribution function was used to study the structural integrity and stability of both pristine and hydrogenated structures. The simulations predicted an improvement in stability and integrity of the atomistic structures under the influence of hydrogenation compared to pristine h-BN. The semihydrogenated structure in which hydrogen was attached only to nitrogen was found to be the least stable configuration, while the fully hydrogenated structure was the most stable. Furthermore, the se... read less NOT USED (high confidence) V. Kuryliuk and S. Semchuk, “Molecular Dynamics Calculation of Thermal Conductivity in a-SiO2 and an a-SiO2-Based Nanocomposite,” Ukrainian Journal of Physics. 2016. link Times cited: 3 Abstract: Thermal conductivity in amorphous SiO 2 ( 𝑎 -SiO 2 ) has be… read moreAbstract: Thermal conductivity in amorphous SiO 2 ( 𝑎 -SiO 2 ) has been studied in a wide range of temperatures, by using the nonequilibrium molecular dynamics method and the Beest–Kramer–Santen, Tersoff, and Vashishta empirical potentials. The thermal conductivity of an 𝑎 -SiO 2 -based composite with Si nanocrystals is calculated with the use of the Tersoff potential. The thermal conductivity of the nanocomposite is shown to firstly decrease and then to increase, as the silicon volumetric ratio grows. The obtained results are explained by the enhanced scattering of thermal vibrations at the matrix–Si nanocrystal boundaries. read less NOT USED (high confidence) S. Chavoshi, S. Goel, and X. Luo, “Influence of temperature on the anisotropic cutting behaviour of single crystal silicon: A molecular dynamics simulation investigation,” Journal of Manufacturing Processes. 2016. link Times cited: 79 NOT USED (high confidence) G. Qin and M. Hu, “Diverse Thermal Transport Properties of Two-Dimensional Materials: A Comparative Review.” 2016. link Times cited: 7 Abstract: The discovery of graphene led to an upsurge in exploring two… read moreAbstract: The discovery of graphene led to an upsurge in exploring two-dimensional (2D) materials, such as silicene, germanene, phosphorene, hexagonal boron nitride ( h -BN), and transition metal dichalcogenides (TMDCs), which have attracted tremendous attention due to their unique dimension-dependent properties in the applications of nanoelectronics, optoelectronics, and thermoelectrics. The phonon transport proper‐ ties governing the heat energy transfer have become a crucial issue for continuing progress in the electronic industry. This chapter reviews the state-of-the-art theoreti‐ cal and experimental investigations of phonon transport properties of broad 2D nanostructures in various forms, with graphene, silicene and phosphorene as repre‐ sentatives, all of which consist of single element. Special attention is given to the effect of different physical factors, such as sample size, strain, and layer thickness. The effect of substrate and the phonon transport properties in heterostructures are also dis‐ cussed. We find that the phonon transport properties of 2D materials largely depend on their atomic structure and interatomic bonding nature, showing a diverse intrinsic phonon behavior and disparate response to external environment. read less NOT USED (high confidence) J. M. Stevenson, “All-atom modeling for solution-processed solar cell.” 2016. link Times cited: 0 NOT USED (high confidence) S. Chavoshi, S. Xu, and X. Luo, “Dislocation-mediated plasticity in silicon during nanometric cutting : a molecular dynamics simulation study materials science in semiconductor processing,” Materials Science in Semiconductor Processing. 2016. link Times cited: 50 NOT USED (high confidence) H. Dai, G. Chen, Q. Fang, and J. Yin, “The effect of tool geometry on subsurface damage and material removal in nanometric cutting single-crystal silicon by a molecular dynamics simulation,” Applied Physics A. 2016. link Times cited: 56 NOT USED (high confidence) H. Dai, G. Chen, Q. Fang, and J. Yin, “The effect of tool geometry on subsurface damage and material removal in nanometric cutting single-crystal silicon by a molecular dynamics simulation,” Applied Physics A. 2016. link Times cited: 0 NOT USED (high confidence) M. Gatchell and H. Zettergren, “Knockout driven reactions in complex molecules and their clusters,” Journal of Physics B: Atomic, Molecular and Optical Physics. 2016. link Times cited: 54 Abstract: Energetic ions lose some of their kinetic energy when intera… read moreAbstract: Energetic ions lose some of their kinetic energy when interacting with electrons or nuclei in matter. Here, we discuss combined experimental and theoretical studies on such impulse driven reactions in polycyclic aromatic hydrocarbons (PAHs), fullerenes, and pure or mixed clusters of these molecules. These studies show that the nature of excitation is important for how complex molecular systems respond to ion/atom impact. Rutherford-like nuclear scattering processes may lead to prompt atom knockout and formation of highly reactive fragments, while heating of the molecular electron clouds in general lead to formation of more stable and less reactive fragments. In this topical review, we focus on recent studies of knockout driven reactions, and present new calculations of the angular dependent threshold (displacement) energies for such processes in PAHs. The so-formed fragments may efficiently form covalent bonds with neighboring molecules in clusters. These unique molecular growth processes may be important in astrophysical environments such as low velocity shock waves. read less NOT USED (high confidence) X. Han, “Investigation on the complex interaction between particle and substrate in mechanical polishing of silica glass,” The International Journal of Advanced Manufacturing Technology. 2016. link Times cited: 2 NOT USED (high confidence) T. Akıner, J. Mason, and H. Ertürk, “A new interlayer potential for hexagonal boron nitride,” Journal of Physics: Condensed Matter. 2016. link Times cited: 10 Abstract: A new interlayer potential is developed for interlayer inter… read moreAbstract: A new interlayer potential is developed for interlayer interactions of hexagonal boron nitride sheets, and its performance is compared with other potentials in the literature using molecular dynamics simulations. The proposed potential contains Coulombic and Lennard-Jones 6–12 terms, and is calibrated with recent experimental data including the hexagonal boron nitride interlayer distance and elastic constants. The potentials are evaluated by comparing the experimental and simulated values of interlayer distance, density, elastic constants, and thermal conductivity using non-equilibrium molecular dynamics. The proposed potential is found to be in reasonable agreement with experiments, and improves on earlier potentials in several respects. Simulated thermal conductivity values as a function of the number of layers and of temperature suggest that the proposed LJ 6–12 potential has the ability to predict some phonon behaviour during heat transport in the out-of-plane direction. read less NOT USED (high confidence) N. Onofrio, D. Guzman, and A. Strachan, “Atomistic simulations of electrochemical metallization cells: mechanisms of ultra-fast resistance switching in nanoscale devices.,” Nanoscale. 2016. link Times cited: 13 Abstract: We describe a new method that enables reactive molecular dyn… read moreAbstract: We describe a new method that enables reactive molecular dynamics (MD) simulations of electrochemical processes and apply it to study electrochemical metallization cells (ECMs). The model, called EChemDID, extends the charge equilibration method to capture the effect of external electrochemical potential on partial atomic charges and describes its equilibration over connected metallic structures, on-the-fly, during the MD simulation. We use EChemDID to simulate resistance switching in nanoscale ECMs; these devices consist of an electroactive metal separated from an inactive electrode by an insulator and can be reversibly switched to a low-resistance state by the electrochemical formation of a conducting filament between electrodes. Our structures use Cu as the active electrode and SiO2 as the dielectric and have dimensions at the foreseen limit of scalability of the technology, with a dielectric thickness of approximately 1 nm. We explore the effect of device geometry on switching timescales and find that nanowires with an electroactive shell, where ions migrate towards a smaller inactive electrode core, result in faster switching than planar devices. We observe significant device-to-device variability in switching timescales and intermittent switching for these nanoscale devices. To characterize the evolution in the electronic structure of the dielectric as dissolved metallic ions switch the device, we perform density functional theory calculations on structures obtained from an EChemDID MD simulation. These results confirm the appearance of states around the Fermi energy as the metallic filament bridges the electrodes and show that the metallic ions and not defects in the dielectric contribute to the majority of those states. read less NOT USED (high confidence) C. Deng, X. Yu, X. Huang, and N. Yang, “ENHANCEMENT OF INTERFACIAL THERMAL CONDUCTANCE OF SIC BY OVERLAPPED CARBON NANOTUBES AND INTERTUBE ATOMS.” 2016. link Times cited: 8 Abstract: We proposed a new way, adding intertube atoms, to enhance in… read moreAbstract: We proposed a new way, adding intertube atoms, to enhance interfacial thermal conductance (ITC) between SiC-carbon nanotube (CNT) array structure. Non-equilibrium molecular dynamics method was used to study the ITC. The results show that the intertube atoms can significantly enhance the ITC. The dependence of ITC on both the temperature and the number of intertube atoms are shown. The mechanism is analyzed by calculating probability distributions of atomic forces and vibrational density of states. Our study may provide some guidance on enhancing the ITC of CNT-based composites. read less NOT USED (high confidence) D. Kaiser, S. Ghosh, S. Han, and T. Sinno, “Modeling and simulation of compositional engineering in SiGe films using patterned stress fields.” 2016. link Times cited: 2 Abstract: Semiconductor alloys such as silicon–germanium (SiGe) offer … read moreAbstract: Semiconductor alloys such as silicon–germanium (SiGe) offer attractive environments for engineering quantum-confined structures that are the basis for a host of current and future optoelectronic devices. Although vertical stacking of such structures is routinely achieved via heteroepitaxy, lateral manipulation has proven much more challenging. We have recently demonstrated that a patterned elastic stress field applied, with an array of nanoscale indenters, to an initially compositionally uniform SiGe substrate will drive atomic interdiffusion leading to compositional patterns in the near-surface region of the substrate. While this approach may offer a potentially efficient and robust pathway to producing laterally ordered arrays of quantum-confined structures, optimizing it with respect to the various process parameters, such as indenter array geometry, annealing history, and SiGe substrate thickness and composition, is highly challenging. Here, a mesoscopic model based on coarse-grained lattice kinetic Monte Carlo simulation is presented that describes quantitatively the atomic interdiffusion processes in SiGe alloy films subjected to applied stress. We first show that the model provides predictions that are quantitatively consistent with experimental measurements. Then, the model is used to investigate the impact of several process parameters such as indenter shape and pitch. We find that certain indenter configurations produce compositional patterns that are favorable for engineering lateral arrays of quantum-confined structures. read less NOT USED (high confidence) S. Thomas, K. Ajith, and M. C. Valsakumar, “Directional anisotropy, finite size effect and elastic properties of hexagonal boron nitride,” Journal of Physics: Condensed Matter. 2016. link Times cited: 43 Abstract: Classical molecular dynamics simulations have been performed… read moreAbstract: Classical molecular dynamics simulations have been performed to analyze the elastic and mechanical properties of two-dimensional (2D) hexagonal boron nitride (h-BN) using a Tersoff-type interatomic empirical potential. We present a systematic study of h-BN for various system sizes. Young’s modulus and Poisson’s ratio are found to be anisotropic for finite sheets whereas they are isotropic for the infinite sheet. Both of them increase with system size in accordance with a power law. It is concluded from the computed values of elastic constants that h-BN sheets, finite or infinite, satisfy Born’s criterion for mechanical stability. Due to the the strong in-plane sp2 bonds and the small mass of boron and nitrogen atoms, h-BN possesses high longitudinal and shear velocities. The variation of bending rigidity with system size is calculated using the Foppl–von Karman approach by coupling the in-plane bending and out-of-plane stretching modes of the 2D h-BN. read less NOT USED (high confidence) M.-Q. Le and R. Batra, “Mode-I stress intensity factor in single layer graphene sheets,” Computational Materials Science. 2016. link Times cited: 40 NOT USED (high confidence) Z. Zhu, Y. Gong, Y. Zhou, and Q. Gao, “Molecular dynamics simulation of single crystal Nickel nanometric machining,” Science China Technological Sciences. 2016. link Times cited: 17 NOT USED (high confidence) E. Lee, J. Kang, K.-sub Kim, and O. Kwon, “Molecular dynamics simulation study of a carbon-nanotube oscillator in a graphene-nanoribbon trench,” Journal of the Korean Physical Society. 2016. link Times cited: 0 Abstract: A graphene/carbon-nanotube (CNT) hybrid material can be usef… read moreAbstract: A graphene/carbon-nanotube (CNT) hybrid material can be useful in energy storage and nanoelectronic technologies. Here, we address a CNT oscillator encapsulated in a graphene-nanoribbon (GNR) trench as a novel design, and investigate its properties via classical molecular dynamics simulations. Because the energy barrier was very low while the CNT was encapsulated in the GNR trench, the CNT absorbed on the GNR surface could easily be encapsulated in the GNR trench. MD simulations showed that the CNT oscillator encapsulated in a GNR trench was compatible with simple CNT oscillators, so we anticipate that the CNT in the GNR trench could work as an oscillator. Thus, we can anticipate that the CNT encapsulated in a GNR trench can be applied to ultra-sensitive nanoelectromechanical oscillators and that this system has the possibility to be applied to relay-switching devices and to shuttle memories. read less NOT USED (high confidence) A. Ito and S. Okamoto, “Effects of Vacancies, Nitrogen Atoms, and sp Bonds on Mechanical Properties of Graphene Using Molecular Dynamics Simulations.” 2016. link Times cited: 0 Abstract: Mechanical properties of graphene containing atomic size def… read moreAbstract: Mechanical properties of graphene containing atomic size defects, such as vacancy, nitrogen atom, and sp 3 bond are discussed in this chapter. Molecuar dynamics (MD) simulations on tensile and shear loadings of defective graphene were performed to estimate the mechanical properties, such as strength and modulus. We showed the usefulness of MD simulation for understanding the relationship between nano-structures and mechanical properties. read less NOT USED (high confidence) A. Favata, A. Micheletti, P. Podio-Guidugli, and N. Pugno, “How graphene flexes and stretches under concomitant bending couples and tractions,” Meccanica. 2016. link Times cited: 18 NOT USED (high confidence) S. Sarikurt et al., “Tailoring thermal conductivity of silicon/germanium nanowires utilizing core-shell architecture,” Journal of Applied Physics. 2016. link Times cited: 10 Abstract: Low-dimensional nanostructured materials show large variatio… read moreAbstract: Low-dimensional nanostructured materials show large variations in their thermal transport properties. In this work, we investigate the influence of the core-shell architecture on nanowire (1D) thermal conductivity and evaluate its validity as a strategy to achieve a better thermoelectric performance. To obtain the thermal conductivity values, equilibrium molecular dynamics simulations are conducted for core-shell nanowires of silicon and germanium. To explore the parameter space, we have calculated thermal conductivity values of the Si-core/Ge-shell and Ge-core/Si-shell nanowires having different cross-sectional sizes and core contents at several temperatures. Our results indicate that (1) increasing the cross-sectional area of pristine Si and pristine Ge nanowires increases the thermal conductivity, (2) increasing the Ge core size in the Ge-core/Si-shell structure results in a decrease in the thermal conductivity at 300 K, (3) the thermal conductivity of the Si-core/Ge-shell nanowires demonstrates a mini... read less NOT USED (high confidence) M. Wolf et al., “Hydrogenated pyrene: Statistical single-carbon loss below the knockout threshold,” The European Physical Journal D. 2016. link Times cited: 14 NOT USED (high confidence) C. Desgranges and J. Delhommelle, “Evaluation of the grand-canonical partition function using expanded Wang-Landau simulations. IV. Performance of many-body force fields and tight-binding schemes for the fluid phases of silicon.,” The Journal of chemical physics. 2016. link Times cited: 20 Abstract: We extend Expanded Wang-Landau (EWL) simulations beyond clas… read moreAbstract: We extend Expanded Wang-Landau (EWL) simulations beyond classical systems and develop the EWL method for systems modeled with a tight-binding Hamiltonian. We then apply the method to determine the partition function and thus all thermodynamic properties, including the Gibbs free energy and entropy, of the fluid phases of Si. We compare the results from quantum many-body (QMB) tight binding models, which explicitly calculate the overlap between the atomic orbitals of neighboring atoms, to those obtained with classical many-body (CMB) force fields, which allow to recover the tetrahedral organization in condensed phases of Si through, e.g., a repulsive 3-body term that favors the ideal tetrahedral angle. Along the vapor-liquid coexistence, between 3000 K and 6000 K, the densities for the two coexisting phases are found to vary significantly (by 5 orders of magnitude for the vapor and by up to 25% for the liquid) and to provide a stringent test of the models. Transitions from vapor to liquid are predicted to occur for chemical potentials that are 10%-15% higher for CMB models than for QMB models, and a ranking of the force fields is provided by comparing the predictions for the vapor pressure to the experimental data. QMB models also reveal the formation of a gap in the electronic density of states of the coexisting liquid at high temperatures. Subjecting Si to a nanoscopic confinement has a dramatic effect on the phase diagram with, e.g. at 6000 K, a decrease in liquid densities by about 50% for both CMB and QMB models and an increase in vapor densities between 90% (CMB) and 170% (QMB). The results presented here provide a full picture of the impact of the strategy (CMB or QMB) chosen to model many-body effects on the thermodynamic properties of the fluid phases of Si. read less NOT USED (high confidence) R. D’Souza and S. Mukherjee, “Thermoelectric transport in graphene/h-BN/graphene heterostructures: A computational study,” Physica E-low-dimensional Systems & Nanostructures. 2016. link Times cited: 19 NOT USED (high confidence) M. Yu and S. Kenny, “Using atomistic simulations to model cadmium telluride thin film growth,” Journal of Physics: Condensed Matter. 2016. link Times cited: 3 Abstract: Cadmium telluride (CdTe) is an excellent material for low-co… read moreAbstract: Cadmium telluride (CdTe) is an excellent material for low-cost, high efficiency thin film solar cells. It is important to conduct research on how defects are formed during the growth process, since defects lower the efficiency of solar cells. In this work we use computer simulation to predict the growth of a sputter deposited CdTe thin film. On-the-fly kinetic Monte Carlo technique is used to simulate the CdTe thin film growth on the (1 1 1) surfaces. The results show that on the (1 1 1) surfaces the growth mechanisms on surfaces which are terminated by Cd or Te are quite different, regardless of the deposition energy (0.1∼10 ?> eV). On the Te-terminated (1 1 1) surface the deposited clusters first form a single mixed species layer, then the Te atoms in the mixed layer moved up to form a new layer. Whilst on the Cd-terminated (1 1 1) surface the new Cd and Te layers are formed at the same time. Such differences are probably caused by stronger bonding between ad-atoms and surface atoms on the Te layer than on the Cd layer. read less NOT USED (high confidence) V. Hizhnyakov, A. Shelkan, M. Haas, and M. Klopov, “Discrete breathers above phonon spectrum,” Letters on Materials. 2016. link Times cited: 13 Abstract: It is shown that in some metals (Ni, Nb, Fe, Cu) may exist d… read moreAbstract: It is shown that in some metals (Ni, Nb, Fe, Cu) may exist discrete breathers with frequencies above the top of the phonon spectrum. These excitations are mobile: they may propagate along the crystallographic directions transferring energy of > ~ 1 eV over large distances. The discrete breathers with the frequencies above the top of the phonon bands may also exist in covalent crystals (diamond, Si and Ge). It is also found that in monatomic chains and planes (e.g. in graphene), the transverse discrete breathers may be excited above the spectrum of corresponding phonons. Although these vibrations are in resonance with longitudinal (chain) or in-plane (graphene) phonons the lifetime of them may be very long. read less NOT USED (high confidence) M. Eftekhari and S. Mohammadi, “Molecular dynamics simulation of the nonlinear behavior of the CNT-reinforced calcium silicate hydrate (C–S–H) composite,” Composites Part A-applied Science and Manufacturing. 2016. link Times cited: 63 NOT USED (high confidence) J. Yu, Y. Zhang, and J. Hales, “Milestone report on MD potential development for uranium silicide.” 2016. link Times cited: 0 Abstract: This report summarizes the progress on the interatomic poten… read moreAbstract: This report summarizes the progress on the interatomic potential development of triuranium-disilicide (U3Si2) for molecular dynamics (MD) simulations. The development is based on the Tersoff type potentials for single element U and Si. The Si potential is taken from the literature and a Tersoff type U potential is developed in this project. With the primary focus on the U3Si2 phase, some other U-Si systems such as U3Si are also included as a test of the transferability of the potentials for binary U-Si phases. Based on the potentials for unary U and Si, two sets of parameters for the binary U-Si system are developed using the Tersoff mixing rules and the cross-term fitting, respectively. The cross-term potential is found to give better results on the enthalpy of formation, lattice constants and elastic constants than those produced by the Tersoff mixing potential, with the reference data taken from either experiments or density functional theory (DFT) calculations. In particular, the results on the formation enthalpy and lattice constants for the U3Si2 phase and lattice constants for the high temperature U3Si (h-U3Si) phase generated by the cross-term potential agree well with experimental data. Reasonable agreements are also reached on the elastic constants of U3Si2,more » on the formation enthalpy for the low temperature U3Si (m-U3Si) and h-U3Si phases, and on the lattice constants of m-U3Si phase. All these phases are predicted to be mechanically stable. The unary U potential is tested for three metallic U phases (α, β, γ). The potential is found capable to predict the cohesive energies well against experimental data for all three phases. It matches reasonably with previous experiments on the lattice constants and elastic constants of αU.« less read less NOT USED (high confidence) T. Pavloudis, K. Termentzidis, P. Komninou, C. D. Latham, P. Briddon, and J. Kioseoglou, “The influence of structural characteristics on the electronic and thermal properties of GaN/AlN core/shell nanowires,” Journal of Applied Physics. 2016. link Times cited: 8 Abstract: Interatomic potential based molecular dynamics and ab initio… read moreAbstract: Interatomic potential based molecular dynamics and ab initio calculations are employed to investigate the structural, thermal, and electronic properties of polar GaN/AlN core/shell nanowires. Nanowire models for the molecular dynamics simulations contain hundreds of thousands of atoms with different shell-to-nanowire ratios. The energetic and structural properties are evaluated through a detailed examination of the strain, the stress, and the displacement fields. It is found that the relaxation of the AlN shell is initiated at the edges, with the shell becoming increasingly stress free when the shell-to-nanowire ratio is increased. The basal lattice parametera of the AlN shell is found to have a smaller value than the value predicted by the elasticity theory. The stresses on the GaN core are strongly influenced by the shell. The core retains the alattice parameter of bulk GaN only up to a shell-to-nanowire ratio equal to 0.10 and is significantly compressed beyond this point. Concerning the thermal properties, the molecular dynamics simulations conclude that there is a linear relationship between the thermal conductivity and the shell-to-core area ratio of the GaN/AlN core/shell nanowires. The bandgaps of the nanowires are calculated through ab initio calculations of 103 atoms and the influence of the structural characteristics on the electronic properties is investigated. A well-defined relationship that predicts the bandgap of the GaN/AlN nanowires, follows the 2nd order Vegard's law and taking into account the shell-to-nanowire ratio, is established. Finally, the valence band maximum is found to be dominated by the surface N-2p levels, while the conduction band minimum is dominated by the core and interface Ga-3s, and the surface Al-2s levels. read less NOT USED (high confidence) S. Goel, A. Kovalchenko, A. Stukowski, and G. Cross, “Influence of microstructure on the cutting behaviour of silicon,” Acta Materialia. 2016. link Times cited: 143 NOT USED (high confidence) S. Chavoshi and X. Luo, “An atomistic simulation investigation on chip related phenomena in nanometric cutting of single crystal silicon at elevated temperatures,” Computational Materials Science. 2016. link Times cited: 50 NOT USED (high confidence) J. Maier and H. Detz, “Atomistic modeling of interfaces in III–V semiconductor superlattices,” physica status solidi (b). 2016. link Times cited: 2 Abstract: Semiconductor heterostructures are well characterized experi… read moreAbstract: Semiconductor heterostructures are well characterized experimentally and provide a solid basis for electronic and optoelectronic devices ranging from single interface to complex superlattice structures. Yet, structural and electronic models commonly describe the material properties in a continuum approach, which neglects the crystalline structure, as well as potential local variations of the composition and resulting strain. Empirical interaction potentials provide an efficient way to model chemical bonds and therefore allow a structural description of multi‐layer structures. This work provides a detailed introduction on methods to minimize the total energy of semiconductor heterostructures at an atomistic level. We present an algorithm to minimize the total energy and generate optimized interface configurations. The relaxed structures are then evaluated with respect to interfacial strain, where different strain calculation methods are evaluated and compared with experimental data. read less NOT USED (high confidence) B. L. Mooney et al., “Elucidating the Properties of Surrogate Fuel Mixtures Using Molecular Dynamics,” Energy & Fuels. 2016. link Times cited: 14 Abstract: The wide compositional differences between conventional and … read moreAbstract: The wide compositional differences between conventional and alternative fuels have resulted in much research aimed at determining which alternative fuels can be used, and in what proportions, in conventional engines. Atomic-scale modeling is uniquely positioned to lend insight into this question without extensive large-scale tests. The predictive power such modeling affords could narrow the phase space that must be examined experimentally. This study utilizes molecular dynamics (MD) simulations to predict the properties of a set of pure hydrocarbons, as well as binary and multicomponent surrogate fuel mixtures for alternative fuels created from these pure components. The accuracy and transferability of the modified Lennard-Jones adaptive intermolecular reactive empirical bond-order potential (mod-LJ AIREBO) [Liu, A.; Stuart, S. J. J. Comput. Chem. 2008, 29, 601−611] was assessed by calculating densities, heats of vaporization, and bulk moduli of pure hydrocarbons and the mixtures of these hydrocarbons, i.... read less NOT USED (high confidence) R. Kumar, G. Rajasekaran, and A. Parashar, “Optimised cut-off function for Tersoff-like potentials for a BN nanosheet: a molecular dynamics study,” Nanotechnology. 2016. link Times cited: 59 Abstract: In this article, molecular dynamics based simulations were c… read moreAbstract: In this article, molecular dynamics based simulations were carried out to study the tensile behaviour of boron nitride nanosheets (BNNSs). Four different sets of Tersoff potential parameters were used in the simulations for estimating the interatomic interactions between boron and nitrogen atoms. Modifications were incorporated in the Tersoff cut-off function to improve the accuracy of results with respect to fracture stress, fracture strain and Young’s modulus. In this study, the original cut-off function was optimised in such a way that small and large cut-off distances were made equal, and hence a single cut-off distance was used with all sets of Tersoff potential parameters. The single value of cut-off distance for the Tersoff potential was chosen after analysing the potential energy and bond forces experienced by boron and nitrogen atoms subjected to bond stretching. The simulations performed with the optimised cut-off function help in identifying the Tersoff potential parameters that reproduce the experimentally evaluated mechanical behaviour of BNNSs. read less NOT USED (high confidence) D. Zhang and L. Nastac, “Progress on Numerical Modeling of the Dispersion of Ceramic Nanoparticles During Ultrasonic Processing and Solidification of Al-Based Nanocomposites,” JOM. 2016. link Times cited: 4 NOT USED (high confidence) J.-H. Lee, J. Kang, and J.-T. Kim, “Frequency Characteristics of Double-Walled Carbon Nanotube Resonator with Different Length,” Materials Science. 2016. link Times cited: 0 Abstract: In this paper, we have conducted classical molecular dynamic… read moreAbstract: In this paper, we have conducted classical molecular dynamics simulations for DWCNTs of various wall lengths to investigate their use as ultrahigh frequency nano-mechanical resonators. We sought to determine the variations in the frequency of these resonators according to changes in the DWCNT wall lengths. For a double-walled carbon nanotube resonator with a shorter inner nanotube, the shorter inner nanotube can be considered to be a flexible core, and thus, the length influences the fundamental frequency. In this paper, we analyze the variation in frequency of ultra-high frequency nano-mechnical resonators constructed from DWCNTs with different wall lengths. DOI: http://dx.doi.org/10.5755/j01.ms.22.2.12951 read less NOT USED (high confidence) D. Donadio, “Simulation of Dimensionality Effects in Thermal Transport,” Lecture Notes in Physics. 2015. link Times cited: 5 NOT USED (high confidence) A. Chandra, P. Patra, and B. Bhattacharya, “Thermal vibration characteristics of armchair boron-nitride nanotubes,” Journal of Applied Physics. 2015. link Times cited: 8 Abstract: A nanomechanical resonator based sensor works by detecting s… read moreAbstract: A nanomechanical resonator based sensor works by detecting small changes in the natural frequency of the device in presence of external agents. In this study, we address the length and the temperature-dependent sensitivity of precompressed armchair Boron-Nitride nanotubes towards their use as sensors. The vibrational data, obtained using molecular dynamics simulations, are analyzed for frequency content through the fast Fourier transformation. As the temperature of the system rises, the vibrational spectrum becomes noisy, and the modal frequencies show a red-shift irrespective of the length of the nanotube, suggesting that the nanotube based sensors calibrated at a particular temperature may not function desirably at other temperatures.Temperature-inducednoise becomes increasingly pronounced with the decrease in the length of the nanotube. For the shorter nanotube at higher temperatures, we observe multiple closely spaced peaks near the natural frequency, that create a masking effect and reduce the sensitivity of detection. However, longer nanotubes do not show these spurious frequencies, and are considerably more sensitive than the shorter ones. read less NOT USED (high confidence) S. Bringuier, V. Manga, K. Runge, P. Deymier, and K. Muralidharan, “An atomic scale characterization of coupled grain boundary motion in silicon bicrystals,” Philosophical Magazine. 2015. link Times cited: 7 Abstract: The mechanical response of symmetric tilt grain boundaries (… read moreAbstract: The mechanical response of symmetric tilt grain boundaries (GBs) in silicon bicrystals under shear loading are characterized using molecular dynamics simulations. It is seen that under shear, high-angle GBs namely Σ5 and Σ13 having a rotation axis [0 0 1] demonstrate coupled GB motion, such that the displacement of grains parallel to the GB interface is accompanied by normal GB motion. An atomic-scale characterization revealed that concerted rotations of silicon tetrahedra within the GB are the primary mechanisms leading to the coupled GB motion. Interestingly, so far, this phenomenon has only been examined in detail for metallic systems. A distinguishing feature of the coupled GB motion observed for the silicon symmetric tilt bicrystals as compared to metallic bicrystals is the fact that in the absence of shear, spontaneous coupled motion is not observed at high temperatures. read less NOT USED (high confidence) T. Han, Y. Luo, and C. Wang, “Effects of SI, N and B Doping on the Mechanical Properties of Graphene Sheets,” Acta Mechanica Solida Sinica. 2015. link Times cited: 15 NOT USED (high confidence) X. Han, “Investigation on the complex interaction between particle and substrate in mechanical polishing of silica glass,” The International Journal of Advanced Manufacturing Technology. 2015. link Times cited: 0 NOT USED (high confidence) B. Narayanan et al., “Describing the Diverse Geometries of Gold from Nanoclusters to Bulk—A First-Principles-Based Hybrid Bond-Order Potential,” Journal of Physical Chemistry C. 2015. link Times cited: 27 Abstract: Molecular dynamics simulations using empirical force fields … read moreAbstract: Molecular dynamics simulations using empirical force fields (EFFs) are crucial for gaining fundamental insights into atomic structure and long time scale dynamics of Au nanoclusters with far-reaching applications in energy and devices. This approach is thwarted by the failure of currently available EFFs in describing the size-dependent dimensionality and diverse geometries exhibited by Au clusters (e.g., planar structures, hollow cages, tubes, pyramids, space-filled structures). Here, we mitigate this issue by introducing a new hybrid bond-order potential (HyBOP), which accounts for (a) short-range interactions via Tersoff-type BOP terms that accurately treat bond directionality and (b) long-range dispersion effects by a scaled Lennard–Jones term whose contribution depends on the local atomic density. We optimized the independent parameters for our HyBOP using a global optimization scheme driven by genetic algorithms. Moreover, to ensure good transferability of these parameters across different length sca... read less NOT USED (high confidence) Q. Xiong and X. Tian, “Torsional properties of hexagonal boron nitride nanotubes, carbon nanotubes and their hybrid structures: A molecular dynamics study,” AIP Advances. 2015. link Times cited: 15 Abstract: The torsional mechanical properties of hexagonal single-wall… read moreAbstract: The torsional mechanical properties of hexagonal single-walled boron nitride nanotubes (SWBNNTs), single-walled carbon nanotubes (SWCNTs), and their hybrid structures (SWBN-CNTs) are investigated using molecular dynamics (MD) simulation. Two approaches - force approach and energy approach, are adopted to calculate the shear moduli of SWBNNTs and SWCNTs, the discrepancy between two approaches is analyzed. The results show that the shear moduli of single-walled nanotubes (SWNTs), including SWBNNTs and SWCNTs are dependent on the diameter, especially for armchair SWNTs. The armchair SWNTs show the better ability of resistance the twisting comparable to the zigzag SWNTs. The effects of diameter and length on the critical values of torque of SWNTs are obtained by comparing the torsional behaviors of SWNTs with different diameters and different lengths. It is observed that the MD results of the effect of diameter and length on the critical values of torque agrees well with the prediction of continuum shell mode... read less NOT USED (high confidence) W.-T. Xu, G. Zhang, and B. Li, “Thermal conductivity of penta-graphene from molecular dynamics study.,” The Journal of chemical physics. 2015. link Times cited: 82 Abstract: Using classical equilibrium molecular dynamics simulations a… read moreAbstract: Using classical equilibrium molecular dynamics simulations and applying the original Tersoff interatomic potential, we study the thermal transport property of the latest two dimensional carbon allotrope, penta-graphene. It is predicted that its room-temperature thermal conductivity is about 167 W/mK, which is much lower than that of graphene. With normal mode decomposition, the accumulated thermal conductivity with respect to phonon frequency and mean free path is analyzed. It is found that the acoustic phonons make a contribution of about 90% to the thermal conductivity, and phonons with mean free paths larger than 100 nm make a contribution over 50%. We demonstrate that the remarkably lower thermal conductivity of penta-graphene compared with graphene results from the lower phonon group velocities and fewer collective phonon excitations. Our study highlights the importance of structure-property relationship and provides better understanding of thermal transport property and valuable insight into thermal management of penta-graphene. read less NOT USED (high confidence) C. Y. Chuang, S. Han, L. Zepeda-Ruiz, and T. Sinno, “On coarse projective integration for atomic deposition in amorphous systems.,” The Journal of chemical physics. 2015. link Times cited: 2 Abstract: Direct molecular dynamics simulation of atomic deposition un… read moreAbstract: Direct molecular dynamics simulation of atomic deposition under realistic conditions is notoriously challenging because of the wide range of time scales that must be captured. Numerous simulation approaches have been proposed to address the problem, often requiring a compromise between model fidelity, algorithmic complexity, and computational efficiency. Coarse projective integration, an example application of the "equation-free" framework, offers an attractive balance between these constraints. Here, periodically applied, short atomistic simulations are employed to compute time derivatives of slowly evolving coarse variables that are then used to numerically integrate differential equations over relatively large time intervals. A key obstacle to the application of this technique in realistic settings is the "lifting" operation in which a valid atomistic configuration is recreated from knowledge of the coarse variables. Using Ge deposition on amorphous SiO2 substrates as an example application, we present a scheme for lifting realistic atomistic configurations comprised of collections of Ge islands on amorphous SiO2 using only a few measures of the island size distribution. The approach is shown to provide accurate initial configurations to restart molecular dynamics simulations at arbitrary points in time, enabling the application of coarse projective integration for this morphologically complex system. read less NOT USED (high confidence) P. Brault and E. Neyts, “Molecular dynamics simulations of supported metal nanocatalyst formation by plasma sputtering,” Catalysis Today. 2015. link Times cited: 26 NOT USED (high confidence) C. Hu, M.-li Bai, J. Lv, Z. Kou, and X.-jie Li, “Molecular dynamics simulation on the tribology properties of two hard nanoparticles (diamond and silicon dioxide) confined by two iron blocks,” Tribology International. 2015. link Times cited: 46 NOT USED (high confidence) G. Samolyuk, Y. Osetsky, and R. Stoller, “Molecular dynamics modeling of atomic displacement cascades in 3C–SiC: Comparison of interatomic potentials,” Journal of Nuclear Materials. 2015. link Times cited: 27 NOT USED (high confidence) J. Harrison, M. Fallet, K. E. Ryan, B. L. Mooney, M. T. Knippenberg, and J. Schall, “Recent developments and simulations utilizing bond-order potentials,” Modelling and Simulation in Materials Science and Engineering. 2015. link Times cited: 12 Abstract: Bond-order potentials (BOPs) have been used successfully in … read moreAbstract: Bond-order potentials (BOPs) have been used successfully in simulations of a wide range of processes. A brief overview of bond-order potentials is provided which focuses on the reactive empirical bond-order (REBO) potential for hydrocarbons (Brenner et al 2002 J. Phys.: Condens. Matter 14 783) and the large number of useful potentials it has spawned. Two specific extensions of the REBO potential that make use of its formalism are discussed. First, the 2B-SiCH potential (Schall and Harrison 2013 J. Phys. Chem. C 117 1323) makes the appropriate changes to the hydrocarbon REBO potential so that three atom types, Si, C, and H, can be modeled. Second, we recently added the electronegative element O, along with the associated charge terms, to the adaptive intermolecular REBO (AIREBO) potential (Stuart et al 2000 J. Chem. Phys. 112 6472). The resulting qAIREBO potential (Knippenberg et al 2012 J. Chem. Phys. 136 164701) makes use of the bond-order potential/split-charge (BOP/SQE) equilibration method (Mikulski et al 2009 J. Chem. Phys. 131 241105) and the Lagrangian approach to charge dynamics (Rick et al 1994 J. Chem. Phys. 101 6141). The integration of these two techniques allows for atomic charges to evolve with time during MD simulations: as a result, chemical reactions can be modeled in C-, O-, and H-containing systems. The usefulness of the 2B-SiCH potential for tribological investigations is demonstrated in molecular dynamics (MD) simulations of axisymmetric tips composed of Si and SiC placed in sliding contact with diamond(1 1 1) surfaces with varying amounts of hydrogen termination. The qAIREBO potential is used to investigate confinement of sub-monolayer coverages of water between nanostructured surfaces. read less NOT USED (high confidence) Z. Huang, L. Wang, S. Bai, and Z. Tang, “Thermal Conductance of Cu and Carbon Nanotube Interface Enhanced by a Graphene Layer,” Chinese Physics Letters. 2015. link Times cited: 3 Abstract: Thermal conductances between Cu and graphene covered carbon … read moreAbstract: Thermal conductances between Cu and graphene covered carbon nanotubes (gCNTs) are calculated by molecular dynamics simulations. The results show that the thermal conductance is about ten times larger than that of Cu-CNT interface. The enhanced thermal conductance is due to the larger contact area introduced by the graphene layer and the stronger thermal transfer ability of the Cu-gCNT interface. From the linear increasing thermal conductance with the increasing total contact area, an effective contact area of such an interface can be defined. read less NOT USED (high confidence) K. Home, T. Antoni, and S. Volz, “Molecular dynamics thermal conductivity computation of a quantum cascade laser diode,” 2015 21st International Workshop on Thermal Investigations of ICs and Systems (THERMINIC). 2015. link Times cited: 0 Abstract: By using molecular dynamics technique, we have computed the … read moreAbstract: By using molecular dynamics technique, we have computed the effective cross-plane thermal conductivity of a single cascade of a quantum cascade laser diode. Additionally, the local phonon density of states was also computed. The Tersoff potential was used with coefficients found from the literature for inter-atomic forces, and the Green-Kubo relation was used to compute the conductivity from the integral of the system heat flux autocorrelation. The computed conductivity lies in the same range as measurements found in the literature, but the local density of states deviated from expected values based on local diode composition, suggesting that previous assumptions made about electron-phonon coupling are incorrect. read less NOT USED (high confidence) Z. Tong, X. Luo, J. Sun, Y. Liang, and X. Jiang, “Investigation of a scale-up manufacturing approach for nanostructures by using a nanoscale multi-tip diamond tool,” The International Journal of Advanced Manufacturing Technology. 2015. link Times cited: 14 NOT USED (high confidence) Z. Tong, Z. Xu, W. Wei, and X. Luo, “Molecular dynamic simulation of low-energy FIB irradiation induced damage in diamond,” Nuclear Instruments & Methods in Physics Research Section B-beam Interactions With Materials and Atoms. 2015. link Times cited: 25 NOT USED (high confidence) U. Monteverde et al., “Under pressure: control of strain, phonons and bandgap opening in rippled graphene,” Carbon. 2015. link Times cited: 59 NOT USED (high confidence) P. Käshammer and T. Sinno, “A mechanistic study of impurity segregation at silicon grain boundaries,” Journal of Applied Physics. 2015. link Times cited: 28 Abstract: The segregation behavior of carbon and oxygen atoms at vario… read moreAbstract: The segregation behavior of carbon and oxygen atoms at various silicon grain boundaries was studied using a combination of atomistic simulation and analytical modeling. First, quasi-lattice Grand Canonical Monte Carlo simulations were used to compute segregation isotherms as a function of grain boundary type, impurity atom loading level, and temperature. Next, the atomistic results were employed to regress different analytical segregation models and extract thermodynamic and structural properties. The multilayer Brunauer–Emmett–Teller (BET) isotherm was found to quantitatively capture all the simulation conditions probed in this work, while simpler, single layer models such as the Langmuir-McLean model did not. Some of the BET parameters, namely, the binding free energy of the first adsorption layer and the impurity holding capacity of each layer, were tested for correlation with various measures of grain boundary structure and/or mechanical properties. It was found that certain measures of the atomistic stress distribution correlate strongly with the first-layer binding free energy for substitutional carbon atoms, while common grain boundary identifiers such as sigma value and energy density are not useful in this regard. Preliminary analysis of the more complex case of interstitial oxygen segregation showed that similar measures based on atomistic stress also may be useful here, but more systematic correlative studies are needed to develop a comprehensive picture. read less NOT USED (high confidence) H. Detz, “Thermal expansion of III–V materials in atomistic models using empirical Tersoff potentials,” Electronics Letters. 2015. link Times cited: 5 Abstract: A method to achieve realistic values for the thermal expansi… read moreAbstract: A method to achieve realistic values for the thermal expansion coefficient in atomistic simulations of III–V materials using empirical Tersoff potentials is reported. The acceptance criterion of the Metropolis Monte Carlo algorithm that is used to relax the structures is modified to suppress exceedingly high thermal expansion, which has previously been observed for Tersoff potentials of III–V materials. Compared with earlier works, the error is reduced from more than 200% to ∼3% for GaAs. Similar behaviour is found for other binary III–V compounds with errors typically around 10% with respect to the experimental data. read less NOT USED (high confidence) Z. Tong and X. Luo, “Investigation of focused ion beam induced damage in single crystal diamond tools,” Applied Surface Science. 2015. link Times cited: 22 NOT USED (high confidence) X. Qi-lin, L. Zhenhuan, and T. Xiaogeng, “The defect-induced fracture behaviors of hexagonal boron-nitride monolayer nanosheets under uniaxial tension,” Journal of Physics D: Applied Physics. 2015. link Times cited: 42 Abstract: Due to its excellent mechanical and electrical insulating pr… read moreAbstract: Due to its excellent mechanical and electrical insulating properties, the hexagonal boron-nitride (h-BN) monolayer nanosheet is regarded as a complementary addition to graphene. However, its mechanical strength can be significantly affected by various defects pre-existing in it, such as a Stone–Wales defect, a vacancy defect, an atomic anti-site defect, etc. In this work, the influences of various pre-existing defects on the fracture behaviors of an h-BN monolayer nanosheet are investigated carefully using molecular dynamics simulation. The results show that the nucleation and evolution of a fracture induced by defects in the h-BN monolayer nanosheet are directional, and that the crack always starts from the location which has a weak bond energy. An unexpected observation is that the defect propagates mostly in the zigzag direction but occasionally in the armchair direction. The fracture strength and the fracture strain of the h-BN monolayer nanosheet are reduced at different extents due to the various pre-existing defects. Additionally, for the defective h-BN monolayer nanosheets, the fracture strength and strain measured in the armchair direction is much higher than the strength found in the zigzag direction. However, the strengths measured in the armchair and zigzag directions for the defect-free h-BN monolayer nanosheets almost are identical which implies that the armchair direction has a stronger ability to resist various defects compared to the zigzag direction. read less NOT USED (high confidence) P. Budarapu, B. Javvaji, V. K. Sutrakar, D. Mahapatra, G. Zi, and T. Rabczuk, “Crack propagation in graphene,” Journal of Applied Physics. 2015. link Times cited: 78 Abstract: The crack initiation and growth mechanisms in an 2D graphene… read moreAbstract: The crack initiation and growth mechanisms in an 2D graphene lattice structure are studied based on molecular dynamics simulations. Crack growth in an initial edge crack model in the arm-chair and the zig-zag lattice configurations of graphene are considered. Influence of the time steps on the post yielding behaviour of graphene is studied. Based on the results, a time step of 0.1 fs is recommended for consistent and accurate simulation of crack propagation. Effect of temperature on the crack propagation in graphene is also studied, considering adiabatic and isothermal conditions. Total energy and stress fields are analyzed. A systematic study of the bond stretching and bond reorientation phenomena is performed, which shows that the crack propagates after significant bond elongation and rotation in graphene. Variation of the crack speed with the change in crack length is estimated. (C) 2015 AIP Publishing LLC. read less NOT USED (high confidence) Y. Fu and J. H. Song, “Heat flux expressions that satisfy the conservation laws in atomistic system involving multibody potentials,” J. Comput. Phys. 2015. link Times cited: 11 NOT USED (high confidence) O. Trushin et al., “Minimum energy path for the nucleation of misfit dislocations in Ge/Si(0 0 1) heteroepitaxy,” Modelling and Simulation in Materials Science and Engineering. 2015. link Times cited: 9 Abstract: A possible mechanism for the formation of a 90° misfit dislo… read moreAbstract: A possible mechanism for the formation of a 90° misfit dislocation at the Ge/Si(0 0 1) interface through homogeneous nucleation is identified from atomic scale calculations where a minimum energy path connecting the coherent epitaxial state and a final state with a 90° misfit dislocation is found using the nudged elastic band method. The initial path is generated using a repulsive bias activation procedure in a model system including 75 000 atoms. The energy along the path exhibits two maxima in the energy. The first maximum occurs as a 60° dislocation nucleates. The intermediate minimum corresponds to an extended 60° dislocation. The subsequent energy maximum occurs as a second 60° dislocation nucleates in a complementary, mirror glide plane, simultaneously starting from the surface and from the first 60° dislocation. The activation energy of the nucleation of the second dislocation is 30% lower than that of the first one showing that the formation of the second 60° dislocation is aided by the presence of the first one. The simulations represent a step towards unraveling the formation mechanism of 90° dislocations, an important issue in the design of growth procedures for strain released Ge overlayers on Si(1 0 0) surfaces, and more generally illustrate an approach that can be used to gain insight into the mechanism of complex nucleation paths of extended defects in solids. read less NOT USED (high confidence) A. Minkin, A. Teslyuk, A. Knizhnik, and B. Potapkin, “GPGPU performance evaluation of some basic molecular dynamics algorithms,” 2015 International Conference on High Performance Computing & Simulation (HPCS). 2015. link Times cited: 5 Abstract: Molecular dynamics is a computationally intensive problem bu… read moreAbstract: Molecular dynamics is a computationally intensive problem but it is extremely amenable for parallel computation. Many-body potentials used for modeling of carbon and metallic nanostructures usually require much more computing resources than pair potentials. One of the ways to improve their performance is to transform them for running on computing systems that combines CPU and GPU. In this work OpenCL performance of basic molecular dynamics algorithms such as neighbor list generation along with different implementations of energy-force computation of Lennard-Jones, Tersoff and EAM potentials is evaluated. It is shown that concurrent memory writes are effective for Tersoff bond order potential and are not good for embedded-atom potential. Performance measurements show a significant GPU acceleration of basic molecular dynamics algorithms over the corresponding serial implementations. read less NOT USED (high confidence) S. Thomas, K. Ajith, S. Chandra, and M. C. Valsakumar, “Temperature dependent structural properties and bending rigidity of pristine and defective hexagonal boron nitride,” Journal of Physics: Condensed Matter. 2015. link Times cited: 58 Abstract: Structural and thermodynamical properties of monolayer prist… read moreAbstract: Structural and thermodynamical properties of monolayer pristine and defective boron nitride sheets (h-BN) have been investigated in a wide temperature range by carrying out atomistic simulations using a tuned Tersoff-type inter-atomic empirical potential. The temperature dependence of lattice parameter, radial distribution function, specific heat at constant volume, linear thermal expansion coefficient and the height correlation function of the thermally excited ripples on pristine as well as defective h-BN sheet have been investigated. Specific heat shows considerable increase beyond the Dulong–Petit limit at high temperatures, which is interpreted as a signature of strong anharmonicity present in h-BN. Analysis of the height fluctuations, ⟨h2⟩ ?>, shows that the bending rigidity and variance of height fluctuations are strongly temperature dependent and this is explained using the continuum theory of membranes. A detailed study of the height–height correlation function shows deviation from the prediction of harmonic theory of membranes as a consequence of the strong anharmonicity in h-BN. It is also seen that the variance of the height fluctuations increases with defect concentration. read less NOT USED (high confidence) A. Galashev and V. Polukhin, “Computer modeling of the structure and properties of mercury films on graphene,” Russian Journal of Physical Chemistry A. 2015. link Times cited: 4 NOT USED (high confidence) K. Nomura, P. E. Small, R. Kalia, A. Nakano, and P. Vashishta, “An extended-Lagrangian scheme for charge equilibration in reactive molecular dynamics simulations,” Comput. Phys. Commun. 2015. link Times cited: 24 NOT USED (high confidence) H.-L. Chen, S. Ju, T.-Y. Wu, S.-H. Liu, and H.-T. Chen, “Investigation of the mechanical properties and local structural evolution of Ti60Zr10Ta15Si15 bulk metallic glass during tensile deformation: a molecular dynamics study,” RSC Advances. 2015. link Times cited: 15 Abstract: Ti60Zr10Ta15Si15 bulk metallic glass (BMG) has been proven t… read moreAbstract: Ti60Zr10Ta15Si15 bulk metallic glass (BMG) has been proven to have potential for use in orthopedic bone fixation devices, and further studies on its structural properties and deformation mechanism under uniaxial tension have been conducted using molecular dynamics (MD) simulations. The Honeycutt–Andersen (HA) index analysis, Voronoi tessellation method and Warren–Cowley short-range order parameter are employed to investigate its structural properties. The results show a high content of icosahedral-like structures, which suggests an amorphous state and a trend for silicon to pair with a metal atom. In its tensile test, the Ti60Zr10Ta15Si15 bulk metallic glass showed good ductility and an estimated Young's modulus of about 93 GPa, which is close to the experimental value. Local strain distribution was used to analyze the deformation mechanism, and the results show that shear bands develop homogeneously, which enhances the plasticity. The Voronoi tessellation analysis and HA index were used to further investigate the plastic/elastic deformation mechanism. The results of the HA analysis show that icosahedral local structures (1551, 1541, 1431) transfer to less dense structures (1422 and 1311), which shows an increase of open volume which can be attributed to the formation of the shear bands. In addition, the Voronoi tessellation analysis also shows a notable change from perfect icosahedra to distorted icosahedra. Further investigation shows the variations of the Voronoi index are mostly the Ti and Si-centered clusters. This suggests that the structures around Ti and Si atoms undergo a severe evolution during the tension process. read less NOT USED (high confidence) P. Norouzzadeh, A. Nozariasbmarz, J. Krasinski, and D. Vashaee, “Thermal conductivity of nanostructured SixGe1−x in amorphous limit by molecular dynamics simulation,” Journal of Applied Physics. 2015. link Times cited: 19 Abstract: We report the thermal conductivity of amorphous SixGe1−x com… read moreAbstract: We report the thermal conductivity of amorphous SixGe1−x compound calculated versus composition and temperature. The result sets the minimum value of thermal conductivity which is achievable by nanostructuring. We employed molecular dynamics with Tersoff's potential for the calculations. It was found that, contrary to the crystalline SixGe1−x, the thermal conductivity of amorphous phase is a weak function of the material composition. For the most popular composition Si0.8Ge0.2, the thermal conductivity of the amorphous phase is less than 1 W m−1 K−1 with small reduction as the temperature increases from 300 K to 1400 K. The thermal conductivity of amorphous SixGe1−x for any value of x is approximately an order of magnitude smaller than the minimum thermal conductivity of crystalline SixGe1−x alloy, which occurs near x = 0.5. It is known that alloying with germanium is more efficient than nanostructuring to reduce the thermal conductivity of silicon; however, it was found that the amorphization process is ... read less NOT USED (high confidence) W. Gao, K. Liechti, and R. Huang, “Wet adhesion of graphene,” Extreme Mechanics Letters. 2015. link Times cited: 18 NOT USED (high confidence) W.-T. Xu, L. Zhu, Y. Cai, G. Zhang, and B. Li, “Direction dependent thermal conductivity of monolayer phosphorene: parameterization of Stillinger-Weber potential and molecular dynamics study,” arXiv: Mesoscale and Nanoscale Physics. 2015. link Times cited: 70 Abstract: A Stillinger-Weber interatomic potential is parameterized fo… read moreAbstract: A Stillinger-Weber interatomic potential is parameterized for phosphorene. It well reproduces the crystal structure, cohesive energy and phonon dispersion predicted by first-principles calculations. The thermal conductivity of phosphorene is further explored by equilibrium molecular dynamics simulations adopting the optimal set of potential parameters. At room temperature, the intrinsic thermal conductivities along zigzag and armchair directions are about 152.7 and 33.0 W/mK, respectively, with a large anisotropy ratio of five. The remarkably directional dependence of thermal conductivity in phosphorene, consistent with previous reports, is mainly due to the strong anisotropy of phonon group velocities, and weak anisotropy of phonon lifetimes as revealed by lattice dynamics calculations. Moreover, the effective phonon mean free paths at zigzag and armchair directions are about 141.4 and 43.4nm, respectively. read less NOT USED (high confidence) S. Naserifar, W. Goddard, T. Tsotsis, and M. Sahimi, “First principles-based multiparadigm, multiscale strategy for simulating complex materials processes with applications to amorphous SiC films.,” The Journal of chemical physics. 2015. link Times cited: 9 Abstract: Progress has recently been made in developing reactive force… read moreAbstract: Progress has recently been made in developing reactive force fields to describe chemical reactions in systems too large for quantum mechanical (QM) methods. In particular, ReaxFF, a force field with parameters that are obtained solely from fitting QM reaction data, has been used to predict structures and properties of many materials. Important applications require, however, determination of the final structures produced by such complex processes as chemical vapor deposition, atomic layer deposition, and formation of ceramic films by pyrolysis of polymers. This requires the force field to properly describe the formation of other products of the process, in addition to yielding the final structure of the material. We describe a strategy for accomplishing this and present an example of its use for forming amorphous SiC films that have a wide variety of applications. Extensive reactive molecular dynamics (MD) simulations have been carried out to simulate the pyrolysis of hydridopolycarbosilane. The reaction products all agree with the experimental data. After removing the reaction products, the system is cooled down to room temperature at which it produces amorphous SiC film, for which the computed radial distribution function, x-ray diffraction pattern, and the equation of state describing the three main SiC polytypes agree with the data and with the QM calculations. Extensive MD simulations have also been carried out to compute other structural properties, as well the effective diffusivities of light gases in the amorphous SiC film. read less NOT USED (high confidence) P. Pokatashkin, A. Kuksin, and A. Yanilkin, “Angular dependent potential for α-boron and large-scale molecular dynamics simulations,” Modelling and Simulation in Materials Science and Engineering. 2015. link Times cited: 9 Abstract: Both quantum mechanical and molecular-dynamics (MD) simulati… read moreAbstract: Both quantum mechanical and molecular-dynamics (MD) simulations of α-boron are done at this work. Angular dependent interatomic potential (ADP) for boron is obtained using force-matching technique. Fitting data are based on ab initio results within −20..100 GPa pressure range and temperatures up to 2000 K. Characteristics of α-boron, obtained using ADP potential such as bond lengths at equilibrium condition, bulk modulus, pressure-volume relations, Gruneisen coefficient, thermal expansion coefficient are in good agreement with both ab initio data, obtained in this work and known experimental data. As an example of application, the propagation of shock waves through a single crystal of α-boron is also explored by large-scale MD simulations. read less NOT USED (high confidence) X. W. Zhou, M. E. Foster, R. Jones, P. Yang, H. Fan, and F. Doty, “A modified Stillinger-Weber potential for TlBr and its polymorphic extension,” Journal of Materials Science Research. 2015. link Times cited: 6 Abstract: TlBr is promising for g- and x- radiation detection, but suf… read moreAbstract: TlBr is promising for g- and x- radiation detection, but suffers from rapid performance degradation under the operating external electric fields. To enable molecular dynamics (MD) studies of this degradation, we have developed a Stillinger-Weber type of TlBr interatomic potential. During this process, we have also addressed two problems of wider interests. First, the conventional Stillinger-Weber potential format is only applicable for tetrahedral structures (e.g., diamond-cubic, zinc-blende, or wurtzite). Here we have modified the analytical functions of the Stillinger-Weber potential so that it can now be used for other crystal structures. Second, past modifications of interatomic potentials cannot always be applied by a broad community because any new analytical functions of the potential would require corresponding changes in the molecular dynamics codes. Here we have developed a polymorphic potential model that simultaneously incorporates Stillinger-Weber, Tersoff, embedded-atom method, and any variations (i.e., modified functions) of these potentials. We have implemented this polymorphic model in MD code LAMMPS, and demonstrated that our TlBr potential enables stable MD simulations under external electric fields. read less NOT USED (high confidence) S. Shin and M. Kaviany, “Optical phonon production by upconversion: Heterojunction-transmitted versus native phonons,” Physical Review B. 2015. link Times cited: 5 Abstract: High-energy optical phonons are preferred in phonon-absorbin… read moreAbstract: High-energy optical phonons are preferred in phonon-absorbing transitions, and regarding their production we analyze the phonon upconversion processes under nonequilibrium created by heterojunction transmission. For heterojunctions, steady phonon flux from a low-cutoff-frequency layer (e.g., Ge) is transmitted to a high cutoff layer (e.g., Si), creating a nonequilibrium population of low-energy phonons for upconversion. Using quantum spectral phonon transmission and first-principles calculations of the phonon interaction kinetics, we identify the high-conversion efficiency channels, i.e., modes and wave vectors. Junction-transmitted phonons, despite suffering from the interface reflection and from spreading interactions with equilibrium native phonons, have a high upconversion rate to Brillouin zone-boundary optical phonons, while nonequilibrium native phonons are efficiently upconverted over most of the zone. So, depending on the harvested optical phonon, one of these nonequilibrium phonons can be selected for an efficient upconversion rate. read less NOT USED (high confidence) C. Y. Chuang, A. Sattler, and T. Sinno, “Thermodynamic and morphological analysis of large silicon self-interstitial clusters using atomistic simulations,” Journal of Applied Physics. 2015. link Times cited: 5 Abstract: We study computationally the formation of thermodynamics and… read moreAbstract: We study computationally the formation of thermodynamics and morphology of silicon self-interstitial clusters using a suite of methods driven by a recent parameterization of the Tersoff empirical potential. Formation free energies and cluster capture zones are computed across a wide range of cluster sizes (2 < Ni < 150) and temperatures (0.65 < T/Tm < 1). Self-interstitial clusters above a critical size (Ni ∼ 25) are found to exhibit complex morphological behavior in which clusters can assume either a variety of disordered, three-dimensional configurations, or one of two macroscopically distinct planar configurations. The latter correspond to the well-known Frank and perfect dislocation loops observed experimentally in ion-implanted silicon. The relative importance of the different cluster morphologies is a function of cluster size and temperature and is dictated by a balance between energetic and entropic forces. The competition between these thermodynamic forces produces a sharp transition between the t... read less NOT USED (high confidence) Z. Tong, X. Luo, J. Sun, Y. Liang, and X. Jiang, “Investigation of a scale-up manufacturing approach for nanostructures by using a nanoscale multi-tip diamond tool,” The International Journal of Advanced Manufacturing Technology. 2015. link Times cited: 0 NOT USED (high confidence) M. Ayatollahi, A. Rahimi, and A. Karimzadeh, “Atomic Simulation of Temperature Effect on the Mechanical Properties of Thin Films.” 2015. link Times cited: 5 Abstract: The molecular dynamic technique was used to simulate the nan… read moreAbstract: The molecular dynamic technique was used to simulate the nano-indentation test on the thin films of silver, titanium, aluminum and copper which were coated on the silicone substrate. The mechanical properties of the selected thin films were studied in terms of the temperature. The temperature was changed from 193 K to 793 K with an increment of 100 K. To investigate the effect of temperature on the mechanical properties, two different ways including step by step and continuous ways, were used. The temperature in the indentation region was controlled and the effect of temperature increase due to the friction between the indenter and the film was taken into account. The temperature effects on the material structure, piling-up and sinking-in phenomena were also considered. The results show that the elasticity modulus and hardness of thin films decrease by increasing temperature. These mechanical properties also decreased due to the increase in temperature, in the indentation region, which in turn was due to the interaction between the indenter and the thin film. read less NOT USED (high confidence) M. Liao, “Influences of vacancy defects on buckling behaviors of open-tip carbon nanocones,” Journal of Materials Research. 2015. link Times cited: 7 Abstract: This study investigated influences of vacancy defects on buc… read moreAbstract: This study investigated influences of vacancy defects on buckling behaviors of open-tip carbon nanocones (CNCs) by molecular dynamics simulations. Effects of vacancy location and temperature on the buckling behaviors were examined in the study. Some interesting findings were attained from the investigations. It was noticed that the CNC with an upper vacancy has comparable degradation in the critical strain and in the critical load with the CNC with a middle vacancy, whereas the CNC with a lower vacancy has lower degradation in the antibuckling ability than the above two CNCs. The antibuckling ability of the CNCs reduces with the growth of the temperature. This temperature effect is more apparent in the perfect CNC than in the vacancy-defect CNCs. It was also observed that the degradation in the antibuckling ability is obvious at a lower temperature, but it decreases as the temperature grows. Besides, all the CNCs (including the perfect and the vacancy-defect CNCs) exhibited a shrinking/swelling buckling mode shape at the studied temperatures. Existence of the vacancies did not alter the buckling mode shape of the CNCs. read less NOT USED (high confidence) X. W. Zhou et al., “A prediction of dislocation‐free CdTe/CdS photovoltaic multilayers via nano‐patterning and composition grading,” Progress in Photovoltaics: Research and Applications. 2015. link Times cited: 12 Abstract: Defects in multilayered films have long been a performance‐l… read moreAbstract: Defects in multilayered films have long been a performance‐limiting problem for the semiconductor industry. For instance, CdTe/CdS solar cell efficiencies have had significant improvement in the past 15years or more without addressing the problem of high misfit dislocation densities. Overcoming this stagnation requires a fundamental understanding of interfacial defect formation. Herein, we demonstrate a new first principles‐based CdTe bond‐order approach that enables efficient molecular dynamics to approach the fidelity of density functional theory. Stringent quantum‐mechanical verification and experimental validation tests reveal that our new approach provides an accurate prediction of defects that earlier methods cannot. Using this new capability, we show that misfit dislocations in CdTe/CdS multilayers can be significantly reduced via nano‐patterning and composition grading and more importantly, dislocation‐free multilayers naturally arise when the pattern dimension is reduced below 90nm. Our predictive methods are generally applicable to other materials, highlighting a rational approach towards low‐defect semiconductor films. Copyright © 2015 John Wiley & Sons, Ltd. read less NOT USED (high confidence) J. Meng, N. Tajaddod, S. W. Cranford, and M. L. Minus, “Polyethylene-Assisted Exfoliation of Hexagonal Boron Nitride in Composite Fibers: A Combined Experimental and Computational Study,” Macromolecular Chemistry and Physics. 2015. link Times cited: 18 Abstract: A joint experimental and computational approach is used to e… read moreAbstract: A joint experimental and computational approach is used to explore the exfoliation mechanism for hexagonal boron nitride (h-BN) in polyethylene (PE)/h-BN composite fi bers during hot-drawing. A shear-fl ow gel-spinning apparatus is utilized to fabricate PE/h-BN composite fi bers with 11 wt% h-BN loading. Different exfoliation states of the h-BN platelets before and after hot-drawing are experimentally examined using wide-angle X-ray diffraction and Raman spectroscopy. Compared with the undrawn (as-spun) fi bers, both analyses show that the intensity of the major h-BN peaks attributed to interlayer interaction signifi cantly decreased for the drawn fi bers, suggesting exfoliation of the h-BN. A full atomistic steered molecular dynamics approach is used to obtain baseline force and work required for h-BN layer separation, as well as to simulate the h-BN exfoliation behavior as a result of the PE matrix shearing effect in the composite. Computational results indicate that a large interactive area between the polymer and the fi llers is required to induce enough stress transfer to exceed the h-BN exfoliation force/energy threshold. Once this threshold is achieved, complete exfoliation of the platelets to monolayer h-BN is demonstrated. By understanding the relationship between interfacial area and interaction strength between polymer matrix and fi llers, this work provides new insight toward use of polymers for producing mono- and few-layered h-BN. read less NOT USED (high confidence) Z. Fan, L. Pereira, H. Q. Wang, J.-C. Zheng, D. Donadio, and A. Harju, “Force and heat current formulas for many-body potentials in molecular dynamics simulations with applications to thermal conductivity calculations,” Physical Review B. 2015. link Times cited: 166 Abstract: Author(s): Fan, Z; Pereira, LFC; Wang, HQ; Zheng, JC; Donadi… read moreAbstract: Author(s): Fan, Z; Pereira, LFC; Wang, HQ; Zheng, JC; Donadio, D; Harju, A | Abstract: © 2015 American Physical Society. We derive expressions of interatomic force and heat current for many-body potentials such as the Tersoff, the Brenner, and the Stillinger-Weber potential used extensively in molecular dynamics simulations of covalently bonded materials. Although these potentials have a many-body nature, a pairwise force expression that follows Newton's third law can be found without referring to any partition of the potential. Based on this force formula, a stress applicable for periodic systems can be unambiguously defined. The force formula can then be used to derive the heat current formulas using a natural potential partitioning. Our heat current formulation is found to be equivalent to most of the seemingly different heat current formulas used in the literature, but to deviate from the stress-based formula derived from two-body potential. We validate our formulation numerically on various systems described by the Tersoff potential, namely three-dimensional silicon and diamond, two-dimensional graphene, and quasi-one-dimensional carbon nanotube. The effects of cell size and production time used in the simulation are examined. read less NOT USED (high confidence) S. Neogi and D. Donadio, “Thermal transport in free-standing silicon membranes: influence of dimensional reduction and surface nanostructures,” The European Physical Journal B. 2015. link Times cited: 24 NOT USED (high confidence) B. Javvaji, M. Ajmalghan, D. R. Mahapatra, M. R. Rahman, and G. Hegde, “Optoelectronic properties of graphene on silicon substrate: effect of defects in graphene,” Photonics West - Optoelectronic Materials and Devices. 2015. link Times cited: 0 Abstract: Engineering of electronic energy band structure in graphene … read moreAbstract: Engineering of electronic energy band structure in graphene based nanostructures has several potential applications. Substrate induced bandgap opening in graphene results several optoelectronic properties due to the inter-band transitions. Various defects like structures, including Stone-Walls and higher-order defects are observed when a graphene sheet is exfoliated from graphite and in many other growth conditions. Existence of defect in graphene based nanostructures may cause changes in optoelectronic properties. Defect engineered graphene on silicon system are considered in this paper to study the tunability of optoelectronic properties. Graphene on silicon atomic system is equilibrated using molecular dynamics simulation scheme. Based on this study, we confirm the existence of a stable super-lattice. Density functional calculations are employed to determine the energy band structure for the super-lattice. Increase in the optical energy bandgap is observed with increasing of order of the complexity in the defect structure. Optical conductivity is computed as a function of incident electromagnetic energy which is also increasing with increase in the defect order. Tunability in optoelectronic properties will be useful in understanding graphene based design of photodetectors, photodiodes and tunnelling transistors. read less NOT USED (high confidence) H.-L. Chen, S. Ju, T.-Y. Wu, J. Hsieh, and S.-H. Liu, “Investigation of Zr and Si diffusion behaviors during reactive diffusion – a molecular dynamics study,” RSC Advances. 2015. link Times cited: 8 Abstract: Molecular dynamics simulation was used to investigate the di… read moreAbstract: Molecular dynamics simulation was used to investigate the diffusion behaviors of Zr and Si atoms during a reactive diffusion which produces Zr silicide. The simulation results were compared with those in Roy's experimental results. The profiles of mean square displacements (MSDs) of Zr and Si atoms at different temperatures were first used to evaluate the melting point above which the significant inter-diffusions of Zr and Si atom occur. The diffusion coefficients near the melting point were derived by the Einstein equation from MSD profiles. On the basis of diffusion coefficients at different temperatures, the diffusion barriers of Zr and Si atoms can be calculated by the Arrhenius equation. Compared to the corresponding experimental values, the predicted diffusion barriers at the Zr–Si interface were 23 times lower than the measured values in Roy's study. The main reason for this is that the Zr and Si atoms within the inter-diffusion region form different local ZrSi crystal alloys in the experiment, resulting in the lower diffusion coefficients and higher diffusion barriers found in the experimental observation. read less NOT USED (high confidence) S. Ju, T.-Y. Wu, and S.-H. Liu, “Mechanical and dynamical behaviors of ZrSi and ZrSi2 bulk metallic glasses: A molecular dynamics study,” Journal of Applied Physics. 2015. link Times cited: 8 Abstract: The mechanical and dynamical properties of ZrSi and ZrSi2 bu… read moreAbstract: The mechanical and dynamical properties of ZrSi and ZrSi2 bulk metallic glasses (BMGs) have been investigated by molecular dynamics simulation. The Honeycutt-Anderson (HA) index analysis indicates that the major indexes in ZrSi and ZrSi2 bulk metallic glasses are 1551, 1541, and 1431, which refers to the liquid structure. For uniaxial tension, the results show that the ZrSi and ZrSi2 BMGs are more ductile than their crystal counterparts. The evolution of the distribution of atomic local shear strain clearly shows the initialization of shear transformation zones (STZs), the extension of STZs, and the formation of shear bands along a direction 45° from the tensile direction when the tensile strain gradually increases. The self-diffusion coefficients of ZrSi and ZrSi2 BMGs at temperatures near their melting points were calculated by the Einstein equation according to the slopes of the MSD profiles at the long-time limit. Because the HA fraction summation of icosahedral-like structures of ZrSi BMG is higher t... read less NOT USED (high confidence) A. Page, F. Ding, S. Irle, and K. Morokuma, “Insights into carbon nanotube and graphene formation mechanisms from molecular simulations: a review,” Reports on Progress in Physics. 2015. link Times cited: 96 Abstract: The discovery of carbon nanotubes (CNTs) and graphene over t… read moreAbstract: The discovery of carbon nanotubes (CNTs) and graphene over the last two decades has heralded a new era in physics, chemistry and nanotechnology. During this time, intense efforts have been made towards understanding the atomic-scale mechanisms by which these remarkable nanostructures grow. Molecular simulations have made significant contributions in this regard; indeed, they are responsible for many of the key discoveries and advancements towards this goal. Here we review molecular simulations of CNT and graphene growth, and in doing so we highlight the many invaluable insights gained from molecular simulations into these complex nanoscale self-assembly processes. This review highlights an often-overlooked aspect of CNT and graphene formation—that the two processes, although seldom discussed in the same terms, are in fact remarkably similar. Both can be viewed as a 0D → 1D → 2D transformation, which converts carbon atoms (0D) to polyyne chains (1D) to a complete sp2-carbon network (2D). The difference in the final structure (CNT or graphene) is determined only by the curvature of the catalyst and the strength of the carbon–metal interaction. We conclude our review by summarizing the present shortcomings of CNT/graphene growth simulations, and future challenges to this important area. read less NOT USED (high confidence) M.-Q. Le and D.-T. Nguyen, “The role of defects in the tensile properties of silicene,” Applied Physics A. 2015. link Times cited: 43 NOT USED (high confidence) Y. Li, C. Tang, J. Zhong, and L. Meng, “Dewetting and detachment of Pt nanofilms on graphitic substrates: A molecular dynamics study,” Journal of Applied Physics. 2015. link Times cited: 7 Abstract: We have investigated the dynamics of dewetting and detachmen… read moreAbstract: We have investigated the dynamics of dewetting and detachment of nanoscale platinum (Pt) films on graphitic substrates using molecular dynamics (MD). For the thinner Pt nanofilms ( 0.6 nm), nanodroplets are formed directly. Interestingly, the nanodroplets can detach from the substrate and the detachment velocity (vd) increases and then decreases as the film gets thicker. We have analyzed the dependence of the detachment velocity on the thickness of the nanofilm by considering the conversion of surface energy to the kinetic energy of a droplet. In addition, the effect of temperature on the dewetting and detachment behavior of the Pt films is also discussed. Our results show that vd increases monotonically with temperature. These results are important for understanding the dewetting and detachment dynamics of metal films o... read less NOT USED (high confidence) X. W. Zhou, D. Ward, M. Foster, and J. Zimmerman, “An analytical bond-order potential for the copper–hydrogen binary system,” Journal of Materials Science. 2015. link Times cited: 18 NOT USED (high confidence) A. Shakouri, J. Yeo, T. Ng, Z. Liu, and H. Taylor, “Superlubricity-activated thinning of graphite flakes compressed by passivated crystalline silicon substrates for graphene exfoliation,” Carbon. 2014. link Times cited: 4 NOT USED (high confidence) X. Luo, Z. Tong, and Y. Liang, “Investigation of the shape transferability of nanoscale multi-tip diamond tools in the diamond turning of nanostructures,” Applied Surface Science. 2014. link Times cited: 32 NOT USED (high confidence) Z. Ye and A. Martini, “Atomistic simulation of the load dependence of nanoscale friction on suspended and supported graphene.,” Langmuir : the ACS journal of surfaces and colloids. 2014. link Times cited: 33 Abstract: Suspended graphene exhibits distinct behavior in which nanos… read moreAbstract: Suspended graphene exhibits distinct behavior in which nanoscale friction first increases and then decreases with load; this is in contrast to the monotonic increase of friction with load exhibited by most materials, including graphene supported by a substrate. In this work, these friction trends are reproduced for the first time using molecular dynamics simulations of a nanoscale probe scanning on suspended and supported graphene. The atomic-scale detail available in the simulations is used to correlate friction trends to the presence and size of a wrinkle on the graphene surface in front of the probe. The simulations also provide information about how frictional load dependence is affected by the size of the graphene, the size of the probe, and the strength of the interaction between graphene and probe. read less NOT USED (high confidence) M.-Q. Le and D.-T. Nguyen, “The role of defects in the tensile properties of silicene,” Applied Physics A. 2014. link Times cited: 0 NOT USED (high confidence) A. D. Bobadilla and J. Seminario, “Argon-Beam-Induced Defects in a Silica-Supported Single-Walled Carbon Nanotube,” Journal of Physical Chemistry C. 2014. link Times cited: 8 Abstract: Ion beams can be used to tailor the structure and properties… read moreAbstract: Ion beams can be used to tailor the structure and properties of carbon nanostructures. Using molecular dynamics simulations, we explored the effects of irradiating silica-supported single-walled carbon nanotube (CNT) with an ion beam. We analyzed the defects produced at several energy levels when one argon atom collides with a single-walled CNT. At beam energies greater than 32 keV, the resulting defects were mainly single-vacancy defects. In addition to vacancy defects, we found chemisorption on the CNT sidewall, doping of the silica substrate, and cross-linking between the CNT and the substrate; these types of complex defects had a maximum probability of occurrence at around 100 eV and a close to null probability at around 100 keV. read less NOT USED (high confidence) M. Khalkhali, Q. Liu, and H. Zhang, “A comparison of different empirical potentials in ZnS,” Modelling and Simulation in Materials Science and Engineering. 2014. link Times cited: 7 Abstract: The accuracy of molecular dynamics simulation highly depends… read moreAbstract: The accuracy of molecular dynamics simulation highly depends on the reliability of the empirical potential that it uses. Atomistic simulations of ZnS have attracted a lot of attention in the past few decades due to the technological importance of this material as a semiconductor and the main resource of world zinc production. Although multiple empirical potentials have been suggested for ZnS, there is no comprehensive study that compares the performance of these potentials. In this paper, we have reviewed five of the most used ZnS empirical potentials and have tested their performance in predicting different ZnS properties. Based on the obtained results, we provide recommendations for a proper empirical potential based on the application that the molecular mechanic simulation is aiming for. read less NOT USED (high confidence) N. Takahashi, T. Yamasaki, and C. Kaneta, “Molecular dynamics simulations on the oxidation of Si(100)/SiO2 interface: Emissions and incorporations of Si‐related species into the SiO2 and substrate,” physica status solidi (b). 2014. link Times cited: 4 Abstract: Si(100)‐oxidation processes at the Si/SiO2 interface and in … read moreAbstract: Si(100)‐oxidation processes at the Si/SiO2 interface and in the SiO2 region are investigated focusing on the dynamics of Si and SiO emissions from the interface and the following incorporation into the substrate and/or SiO2. To clarify these atomic processes, classical molecular dynamics (MD) simulations with variable charge interatomic potentials are performed. By incorporating oxygen atoms, twofold coordinated (twofolded) Si atoms are formed after structural relaxation at the interface. The energy changes of the twofolded Si emissions into the substrate and SiO2 are estimated to be 2.97–7.81 eV. The energy barrier of the twofolded Si emission as SiO molecule is estimated to be 1.20 eV on the basis of the enthalpy change in an MD simulation. The emitted SiO molecule is incorporated into the SiO2 network through a Si–O rebonding process with leaving local deficiency of oxygen, i.e., generating an oxygen vacancy. The energy barrier of the SiO incorporation is estimated to be 0.79–0.81 eV. The elementary process of oxygen vacancy diffusion leading to the complete SiO incorporation are also simulated, and the energy barriers are found to be relatively small, 0.71–0.79 eV. The energy changes of Si emissions into the substrate and SiO2 are larger than the energy barrier of the SiO emission, which suggests that, at the ideally flat Si/SiO2 interface with relatively small oxidation stress, the SiO emission into the SiO2 region occurs prior to the Si emission. This result is consistent with previous theoretical and experimental studies. The above‐mentioned typical atomic processes are successfully extracted from some (or one) of MD simulations among many trials in which a statistical procedure is partly employed. Our results give a unified understanding of Si oxidation processes from an atomistic point of view. read less NOT USED (high confidence) M.-Q. Le, “Size effects in mechanical properties of boron nitride nanoribbons,” Journal of Mechanical Science and Technology. 2014. link Times cited: 23 NOT USED (high confidence) K. Tang, F. Zhu, Y. Li, K. Duan, S. Liu, and Y. Chen, “Effect of defects on thermal conductivity of graphene,” 2014 15th International Conference on Electronic Packaging Technology. 2014. link Times cited: 1 Abstract: Defects could be inevitably generated during the growth or t… read moreAbstract: Defects could be inevitably generated during the growth or the artificial operation of graphene. The existence of structure defects could be influence to excellent properties of graphene. Non-equilibrium molecular dynamics (NEMD) simulations was used to investigate the thermal conductivity of graphene with single vacancy (SV) and stone-wales (SW) defects. Dependence of temperature showed that thermal conductivity of pristine graphene would decrease with increasing temperature, and graphene with SV and SW defects had weaken temperature dependence than that of pristine graphene. The existence of SV and SW defects could both reduce the thermal conductivity of graphene. However it was indicated that SV defects had more significant effect on thermal conductivity of graphene than SW defects. read less NOT USED (high confidence) V. I. Tokar and H. Dreyss’e, “Size calibration of strained epitaxial islands due to dipole–monopole interaction,” Journal of Statistical Mechanics: Theory and Experiment. 2014. link Times cited: 2 Abstract: Irreversible growth of strained epitaxial nanoislands has be… read moreAbstract: Irreversible growth of strained epitaxial nanoislands has been studied with the use of the kinetic Monte Carlo (KMC) technique. It has been shown that the strain-inducing size misfit between the substrate and the overlayer produces long range dipole–monopole (d–m) interaction between the mobile adatoms and the islands. To simplify the account of the long range interactions in the KMC simulations, use has been made of a modified square island model. An analytic formula for the interaction between the point surface monopole and the dipole forces has been derived and used to obtain a simple expression for the interaction between the mobile adatom and the rectangular island. The d–m interaction was found to be longer ranged than the conventional dipole–dipole potential. The narrowing of the island size distributions (ISDs) observed in the simulations was shown to be a consequence of a weaker repulsion of adatoms from small islands than from large ones which led to the preferential growth of the former. Furthermore, similar to the unstrained case, the power-law behavior of the average island size and of the island density on the coverage has been found. In contrast to the unstrained case, the value of the scaling exponent was not universal but strongly dependent on the strength of the long range interactions. Qualitative agreement of the simulation results with some previously unexplained behaviors of experimental ISDs in the growth of semiconductor quantum dots was observed. read less NOT USED (high confidence) M.-Q. Le, “Size effects in mechanical properties of boron nitride nanoribbons,” Journal of Mechanical Science and Technology. 2014. link Times cited: 0 NOT USED (high confidence) A. Favata, A. Micheletti, P. Podio-Guidugli, and N. Pugno, “Geometry and Self-stress of Single-Wall Carbon Nanotubes and Graphene via a Discrete Model Based on a 2nd-Generation REBO Potential,” Journal of Elasticity. 2014. link Times cited: 33 NOT USED (high confidence) H. Tetlow, J. Boer, I. Ford, D. Vvedensky, J. Coraux, and L. Kantorovich, “Growth of Epitaxial Graphene: Theory and Experiment,” arXiv: Materials Science. 2014. link Times cited: 222 NOT USED (high confidence) C. Niethammer et al., “ls1 mardyn: The massively parallel molecular dynamics code for large systems,” Journal of chemical theory and computation. 2014. link Times cited: 105 Abstract: The molecular dynamics simulation code ls1 mardyn is present… read moreAbstract: The molecular dynamics simulation code ls1 mardyn is presented. It is a highly scalable code, optimized for massively parallel execution on supercomputing architectures and currently holds the world record for the largest molecular simulation with over four trillion particles. It enables the application of pair potentials to length and time scales that were previously out of scope for molecular dynamics simulation. With an efficient dynamic load balancing scheme, it delivers high scalability even for challenging heterogeneous configurations. Presently, multicenter rigid potential models based on Lennard-Jones sites, point charges, and higher-order polarities are supported. Due to its modular design, ls1 mardyn can be extended to new physical models, methods, and algorithms, allowing future users to tailor it to suit their respective needs. Possible applications include scenarios with complex geometries, such as fluids at interfaces, as well as nonequilibrium molecular dynamics simulation of heat and mass transfer. read less NOT USED (high confidence) M. Eftekhari, S. H. Ardakani, and S. Mohammadi, “An XFEM multiscale approach for fracture analysis of carbon nanotube reinforced concrete,” Theoretical and Applied Fracture Mechanics. 2014. link Times cited: 82 NOT USED (high confidence) N. Krishnan and D. Ghosh, “Defect induced plasticity and failure mechanism of boron nitride nanotubes under tension,” Journal of Applied Physics. 2014. link Times cited: 14 Abstract: The effects of Stone-Wales (SW) and vacancy defects on the f… read moreAbstract: The effects of Stone-Wales (SW) and vacancy defects on the failure behavior of boron nitride nanotubes (BNNTs) under tension are investigated using molecular dynamics simulations. The Tersoff-Brenner potential is used to model the atomic interaction and the temperature is maintained close to 300 K. The effect of a SW defect is studied by determining the failure strength and failure mechanism of nanotubes with different radii. In the case of a vacancy defect, the effect of an N-vacancy and a B-vacancy is studied separately. Nanotubes with different chiralities but similar diameter is considered first to evaluate the chirality dependence. The variation of failure strength with the radius is then studied by considering nanotubes of different diameters but same chirality. It is observed that the armchair BNNTs are extremely sensitive to defects, whereas the zigzag configurations are the least sensitive. In the case of pristine BNNTs, both armchair and zigzag nanotubes undergo brittle failure, whereas in the case of defective BNNTs, only the zigzag ones undergo brittle failure. An interesting defect induced plastic behavior is observed in defective armchair BNNTs. For this nanotube, the presence of a defect triggers mechanical relaxation by bond breaking along the closest zigzag helical path, with the defect as the nucleus. This mechanism results in a plastic failure. (C) 2014 AIP Publishing LLC. read less NOT USED (high confidence) M. Park, I. Lee, and Y.-S. Kim, “Lattice thermal conductivity of crystalline and amorphous silicon with and without isotopic effects from the ballistic to diffusive thermal transport regime,” Journal of Applied Physics. 2014. link Times cited: 23 Abstract: Thermal conductivity of a material is an important physical … read moreAbstract: Thermal conductivity of a material is an important physical parameter in electronic and thermal devices, and as the device size shrinks down, its length-dependence becomes unable to be neglected. Even in micrometer scale devices, materials having a long mean free path of phonons, such as crystalline silicon (Si), exhibit a strong length dependence of the thermal conductivities that spans from the ballistic to diffusive thermal transport regime. In this work, through non-equilibrium molecular-dynamics (NEMD) simulations up to 17 μm in length, the lattice thermal conductivities are explicitly calculated for crystalline Si and up to 2 μm for amorphous Si. The Boltzmann transport equation (BTE) is solved within a frequency-dependent relaxation time approximation, and the calculated lattice thermal conductivities in the BTE are found to be in good agreement with the values obtained in the NEMD. The isotopic effects on the length-dependent lattice thermal conductivities are also investigated both in the crystalline and amorphous Si. read less NOT USED (high confidence) Y. Long and J. Chen, “A molecular dynamics study of the early-time mechanical heating in shock-loaded octahydro-1,3,5,7-tetranitro-1,3,5,7-tetrazocine-based explosives,” Journal of Applied Physics. 2014. link Times cited: 13 Abstract: We study the shock-induced hot spot formation mechanism of o… read moreAbstract: We study the shock-induced hot spot formation mechanism of octahydro-1,3,5,7-tetranitro-1,3,5,7-tetrazocine-based explosives by molecular dynamics, compare different kinds of desensitizers and different shock velocities. A set of programs is written to calculate the physical picture of shock loading. Based on the simulations and analyses, the hot spots are found at the interface and are heated by plastic work in three ways: the interface intrinsic dissipation, the pore collapse, and the coating layer deformation. The work/heat transition rate is proved to be increasing with a loading speed. read less NOT USED (high confidence) K. Hahn, C. Melis, and L. Colombo, “Effect of structural features on the thermal conductivity of SiGe-based materials,” The European Physical Journal B. 2014. link Times cited: 12 NOT USED (high confidence) X. Lu, H. Wang, Y. Wei, J. Wen, M. Niu, and S. Jia, “Extreme strain rate and temperature dependence of the mechanical properties of nano silicon nitride thin layers in a basal plane under tension: a molecular dynamics study.,” Physical chemistry chemical physics : PCCP. 2014. link Times cited: 2 Abstract: Molecular dynamics simulations are performed to clarify the … read moreAbstract: Molecular dynamics simulations are performed to clarify the extreme strain rate and temperature dependence of the mechanical behaviors of nano silicon nitride thin layers in a basal plane under tension. It is found that fracture stresses show almost no change with increasing strain rate. However, fracture strains decrease gradually due to the appearance of additional N(2c)-Si bond breaking defects in the deformation process. With increasing loading temperature, there is a noticeable drop in fracture stress and fracture strain. In the low temperature range, roughness phases can be observed owing to a combination of factors such as configuration evolution and energy change. read less NOT USED (high confidence) I. Y. Gotlib, A. K. Ivanov-Schitz, I. Murin, A. V. Petrov, G. A. Romantsov, and R. Zakalyukin, “Molecular dynamics simulation of SnF2 nanostructures in the internal channels of single-walled carbon nanotubes,” Physics of the Solid State. 2014. link Times cited: 1 NOT USED (high confidence) M. Liao, “Buckling behaviors of open-tip carbon nanocones at elevated temperatures,” Applied Physics A. 2014. link Times cited: 12 NOT USED (high confidence) M. Liao, “Buckling behaviors of open-tip carbon nanocones at elevated temperatures,” Applied Physics A. 2014. link Times cited: 0 NOT USED (high confidence) N. Wang and K. Komvopoulos, “The effect of deposition energy of energetic atoms on the growth and structure of ultrathin amorphous carbon films studied by molecular dynamics simulations,” Journal of Physics D: Applied Physics. 2014. link Times cited: 14 Abstract: The growth and structure of ultrathin amorphous carbon films… read moreAbstract: The growth and structure of ultrathin amorphous carbon films was investigated by molecular dynamics simulations. The second-generation reactive-empirical-bond-order potential was used to model atomic interactions. Films with different structures were simulated by varying the deposition energy of carbon atoms in the range of 1–120 eV. Intrinsic film characteristics (e.g. density and internal stress) were determined after the system reached equilibrium. Short- and intermediate-range carbon atom ordering is examined in the context of atomic hybridization and ring connectivity simulation results. It is shown that relatively high deposition energy (i.e., 80 eV) yields a multilayer film structure consisting of an intermixing layer, bulk film and surface layer, consistent with the classical subplantation model. The highest film density (3.3 g cm−3), sp3 fraction (∼43%), and intermediate-range carbon atom ordering correspond to a deposition energy of ∼80 eV, which is in good agreement with experimental findings. read less NOT USED (high confidence) N. Takahashi, T. Yamasaki, and C. Kaneta, “Molecular dynamics study of Si(100)-oxidation: SiO and Si emissions from Si/SiO2 interfaces and their incorporation into SiO2,” Journal of Applied Physics. 2014. link Times cited: 9 Abstract: Dynamics of Si(100)-oxidation processes at the Si/SiO2 inter… read moreAbstract: Dynamics of Si(100)-oxidation processes at the Si/SiO2 interface and in the SiO2 region are investigated focusing on SiO and Si emissions from the interface and the following incorporation into the SiO2 and/or substrate. Classical molecular dynamics (MD) simulations with variable charge interatomic potentials are performed to clarify these atomic processes. By incorporating oxygen atoms, two-folded Si atoms are formed after structural relaxation at the interface and are emitted as SiO molecules into SiO2. The energy barrier of the SiO emission is estimated to be 1.20 eV on the basis of the enthalpy change in an MD simulation. The emitted SiO molecule is incorporated into the SiO2 network through a Si-O rebonding process with generating an oxygen vacancy. The energy barrier of the SiO incorporation is estimated to be 0.79–0.81 eV. The elementary process of oxygen vacancy diffusion leading to the complete SiO incorporation is also simulated, and the energy barriers are found to be relatively small, 0.71–0.79 eV. The energy changes of Si emissions into the substrate and SiO2 are estimated to be 2.97–7.81 eV, which are larger than the energy barrier of the SiO emission. This result suggests that, at the ideally flat Si/SiO2 interface, the SiO emission into the SiO2 region occurs prior to the Si emission, which is consistent with previous theoretical and experimental studies. The above mentioned typical atomic processes are successfully extracted from some (or one) of MD simulations among many trials in which a statistical procedure is partly employed. Our results give a unified understanding of Si oxidation processes from an atomistic point of view. read less NOT USED (high confidence) M. Li and Y. Yue, “Molecular dynamics study of thermal transport in amorphous silicon carbide thin film,” RSC Advances. 2014. link Times cited: 15 Abstract: The emergence of amorphous silicon carbide (a-SiC) thin film… read moreAbstract: The emergence of amorphous silicon carbide (a-SiC) thin film based photovoltaic applications has provoked great interest in its physical properties. In this work, we report the first comprehensive study of thermal transport in the a-SiC thin film from 10 nm to 50 nm under various conditions using empirical molecular dynamic (MD) simulations. The thermal conductivity increases from 1.38 to 1.75 W m−1K−1 as temperature increases from 100 K to 1100 K. A similar increase in the thermal conductivity from 1.4 to 2.09 W m−1K−1 is obtained with densities from 2.7 to 3.24 g cm−3. Besides, a slight increase in the thermal conductivity (15%) with calculation domain from 10 nm to 50 nm is observed, indicating that the size dependence of thermal transport also exists in nanoscale amorphous structures. For the physical interpretation of simulation results, the phonon mean free path (MFP) and specific heat are calculated, which are responsible for the temperature dependence of the thermal conductivity. The phonon group velocity is the key factor for the change in thermal conductivity with density. The results also show that the phonon MFP decreases rapidly with temperature and is subject to the Matthiessen's rule. read less NOT USED (high confidence) M. Legesse, M. Nolan, and G. Fagas, “A first principles analysis of the effect of hydrogen concentration in hydrogenated amorphous silicon on the formation of strained Si-Si bonds and the optical and mobility gaps,” Journal of Applied Physics. 2014. link Times cited: 10 Abstract: In this paper, we use a model of hydrogenated amorphous sili… read moreAbstract: In this paper, we use a model of hydrogenated amorphous silicon generated from molecular dynamics with density functional theory calculations to examine how the atomic geometry and the optical and mobility gaps are influenced by mild hydrogen oversaturation. The optical and mobility gaps show a volcano curve as the hydrogen content varies from undersaturation to mild oversaturation, with largest gaps obtained at the saturation hydrogen concentration. At the same time, mid-gap states associated with dangling bonds and strained Si-Si bonds disappear at saturation but reappear at mild oversaturation, which is consistent with the evolution of optical gap. The distribution of Si-Si bond distances provides the key to the change in electronic properties. In the undersaturation regime, the new electronic states in the gap arise from the presence of dangling bonds and strained Si-Si bonds, which are longer than the equilibrium Si-Si distance. Increasing hydrogen concentration up to saturation reduces the strained ... read less NOT USED (high confidence) S. Goel, “The current understanding on the diamond machining of silicon carbide,” Journal of Physics D: Applied Physics. 2014. link Times cited: 139 Abstract: The Glenn Research Centre of NASA, USA (www.grc.nasa.gov/WWW… read moreAbstract: The Glenn Research Centre of NASA, USA (www.grc.nasa.gov/WWW/SiC/, silicon carbide electronics) is in pursuit of realizing bulk manufacturing of silicon carbide (SiC), specifically by mechanical means. Single point diamond turning (SPDT) technology which employs diamond (the hardest naturally-occurring material realized to date) as a cutting tool to cut a workpiece is a highly productive manufacturing process. However, machining SiC using SPDT is a complex process and, while several experimental and analytical studies presented to date aid in the understanding of several critical processes of machining SiC, the current knowledge on the ductile behaviour of SiC is still sparse. This is due to a number of simultaneously occurring physical phenomena that may take place on multiple length and time scales. For example, nucleation of dislocation can take place at small inclusions that are of a few atoms in size and once nucleated, the interaction of these nucleations can manifest stresses on the micrometre length scales. The understanding of how these stresses manifest during fracture in the brittle range, or dislocations/phase transformations in the ductile range, is crucial to understanding the brittle–ductile transition in SiC. Furthermore, there is a need to incorporate an appropriate simulation-based approach in the manufacturing research on SiC, owing primarily to the number of uncertainties in the current experimental research that includes wear of the cutting tool, poor controllability of the nano-regime machining scale (effective thickness of cut), and coolant effects (interfacial phenomena between the tool, workpiece/chip and coolant), etc. In this review, these two problems are combined together to posit an improved understanding on the current theoretical knowledge on the SPDT of SiC obtained from molecular dynamics simulation. read less NOT USED (high confidence) A. Galashev and V. Polukhin, “Computer analysis of the stability of copper films on graphene,” Russian Journal of Physical Chemistry A. 2014. link Times cited: 15 NOT USED (high confidence) A. Galashev, “Computer simulation of heating of nickel films on two-layer graphene,” Physics of the Solid State. 2014. link Times cited: 5 NOT USED (high confidence) Z. Wang, K. Bi, H. Guan, and J. Wang, “Thermal Transport between Graphene Sheets and SiC Substrate by Molecular-Dynamical Calculation,” Journal: Materials. 2014. link Times cited: 4 Abstract: Using nonequilibrium molecular dynamics, we investigate the … read moreAbstract: Using nonequilibrium molecular dynamics, we investigate the mechanisms of thermal transport across SiC/graphene sheets. In simulations, 3C-, 4H-, and 6H-SiC are considered separately. Interfacial thermal resistances between Bernal stacking graphene sheets and SiC (Si- or C-terminated) are calculated at the ranges of 100 K~700 K. The results indicate, whether Si-terminated or C-terminated interface, the interfacial thermal resistances of 4H- and 6H-SiC have similar trends over temperatures. Si-terminated interfacial thermal resistances of 3C-SiC are higher than those of 4H- and 6H-SiC in a wide temperature range from 100 K to 600 K. But, for C-rich interface, this range is reduced from 350 K to 500 K. read less NOT USED (high confidence) L. Marqués, M. Aboy, K. Dudeck, G. Botton, A. Knights, and R. Gwilliam, “Modeling and experimental characterization of stepped and v-shaped 311 defects in silicon,” Journal of Applied Physics. 2014. link Times cited: 7 Abstract: We propose an atomistic model to describe extended {311} def… read moreAbstract: We propose an atomistic model to describe extended {311} defects in silicon. It is based on the combination of interstitial and bond defect chains. The model is able to accurately reproduce not only planar {311} defects but also defect structures that show steps, bends, or both. We use molecular dynamics techniques to show that these interstitial and bond defect chains spontaneously transform into extended {311} defects. Simulations are validated by comparing with precise experimental measurements on actual {311} defects. The excellent agreement between the simulated and experimentally derived structures, regarding individual atomic positions and shape of the distinct structural {311} defect units, provides strong evidence for the robustness of the proposed model. read less NOT USED (high confidence) B. Wang, E. Sak-Saracino, L. Sandoval, and H. Urbassek, “Martensitic and austenitic phase transformations in Fe–C nanowires,” Modelling and Simulation in Materials Science and Engineering. 2014. link Times cited: 17 Abstract: Using molecular-dynamics simulation, we study the austenitic… read moreAbstract: Using molecular-dynamics simulation, we study the austenitic and martensitic phase transformation in Fe–C nanowires with C contents up to 1.2 at%. The transformation temperatures decrease with C content. The martensite temperature decreases with wire diameter towards the bulk value. During the transformation, the bcc and fcc phases obey the Kurdjumov–Sachs orientation relationship. For ultrathin wires (diameter D ⩽ 2.8 nm), we observe wire buckling as well as shape-memory effects. Under axial tensile stress the martensite transformation is partially suppressed, leading to strong plastic deformation. Under the highest loads, the austenite only partially back-transforms while the crystalline phases in the wire re-orient giving the multi-phase mixture a high tensile strength. read less NOT USED (high confidence) M. Shen and P. Keblinski, “Ballistic vs. diffusive heat transfer across nanoscopic films of layered crystals,” Journal of Applied Physics. 2014. link Times cited: 15 Abstract: We use non-equilibrium molecular dynamics to study the heat … read moreAbstract: We use non-equilibrium molecular dynamics to study the heat transfer mechanism across sandwich interfacial structures of Si/n-atomic-layers/Si, with 1 ≤ n ≤ 20 and atomic layers composed of WSe2 and/or graphene. In the case of WSe2 sheets, we observe that the thermal resistance of the sandwich structure is increasing almost linearly with the number of WSe2 sheets, n, indicating a diffusive phonon transport mechanism. By contrast in the case of n graphene layers, the interfacial thermal resistance is more or less independent on the number of layers for 1 ≤ n ≤ 10, and is associated with ballistic phonon transport mechanism. We attribute the diffusive heat transfer mechanism across WSe2 sheets to abundant low frequency and low group velocity optical modes that carry most of the heat across the interface. By contrast, in graphene, acoustic modes dominate the thermal transport across the interface and render a ballistic heat flow mechanism. read less NOT USED (high confidence) A. Vasin, O. Vikhrova, and M. Vasilevskiy, “Effects of alloy disorder and confinement on phonon modes and Raman scattering in SixGe1-x nanocrystals : a microscopic modeling,” Journal of Applied Physics. 2014. link Times cited: 6 Abstract: Confinement and alloy disorder effects on the lattice dynami… read moreAbstract: Confinement and alloy disorder effects on the lattice dynamics and Raman scattering in Si1−xGex nanocrystals (NCs) are investigated numerically employing two different empirical inter-atomic potentials. Relaxed NCs of different compositions (x) were built using the Molecular Dynamics method and applying rigid boundary conditions mimicking the effect of surrounding matrix. The resulting variation of bond lengths with x was checked against Vegard's law and the NC phonon modes were calculated using the same inter-atomic potential. The localization of the principal Raman-active (Si-Si, Si-Ge, and Ge-Ge) modes is investigated by analysing representative eigenvectors and their inverse participation ratio. The dependence of the position and intensity of these modes upon x and NC size is presented and compared to previous calculated results and available experimental data. In particular, it is argued that the composition dependence of the intensity of the Si-Ge and Ge-Ge modes does not follow the fraction of the ... read less NOT USED (high confidence) A. Ito, Y. Yoshimoto, S. Saito, A. Takayama, and H. Nakamura, “Molecular dynamics simulation of a helium bubble bursting on tungsten surfaces,” Physica Scripta. 2014. link Times cited: 43 Abstract: The bursting and expansion of helium bubbles near the surfac… read moreAbstract: The bursting and expansion of helium bubbles near the surface of a tungsten material were investigated by using a molecular dynamics (MD) simulation. These helium bubble processes are considered to be important in the formation mechanism of fuzzy tungsten nano-structures. The phase diagram of the occurrence of bursting and expansion of helium bubbles was obtained by our MD simulation. The results of the simulation indicate that a helium bubble with a radius of 1.0 nm needs a high pressure of several tens of GPa to burst near the surface and to expand the bubble structures under the surface to the scale of ten nanometers. Moreover, from the viewpoint of the dynamics, the results of the MD simulation imply that the concavities and convexities observed on the surface in the early stage of the formation of a tungsten fuzzy nano-structure are caused by the bursting of the helium bubble. read less NOT USED (high confidence) Y. Wang, A. Vallabhaneni, B. Qiu, and X. Ruan, “Two-Dimensional Thermal Transport in Graphene: A Review of Numerical Modeling Studies,” Nanoscale and Microscale Thermophysical Engineering. 2014. link Times cited: 54 Abstract: This article reviews recent numerical studies of thermal tra… read moreAbstract: This article reviews recent numerical studies of thermal transport in graphene, with a focus on molecular dynamics simulation, the atomistic Green’s function method, and the phonon Boltzmann transport equation method. The mode-wise phonon contribution to the intrinsic thermal conductivity (κ) of graphene and the effects of extrinsic mechanisms—for example, substrate, isotope, impurities, and defects—on κ are discussed. We also highlight the insights from numerical studies aimed at bridging the gaps between 1D, 2D, and 3D thermal transport in carbon nanotubes/graphene nanoribbons, graphene, and graphite. Numerical studies on thermal transport across the interface between graphene and other materials and nonlinear thermal transport phenomena such as thermal rectification and negative differential thermal resistance are also reviewed. read less NOT USED (high confidence) Y. Ding, C. Chen, Q. Gu, J.-min Liao, and P.-hsiang Chuang, “Application of molecular simulation to investigate chrome(III)-crosslinked collagen problems,” Modelling and Simulation in Materials Science and Engineering. 2014. link Times cited: 9 Abstract: Molecular dynamics simulation with a modified CHARMM (Chemis… read moreAbstract: Molecular dynamics simulation with a modified CHARMM (Chemistry at Harvard Macromolecular Mechanics) force field was carried out to investigate the properties of chrome-tanned collagen in comparison with chrome-free collagen under hydrated and dehydrated conditions. An attempt has been made to explain the microcosmic origins of the various properties of the chromium(III)-crosslinked collagen. The present simulation describes the clear crosslinking topology of polychromiums to peptide chains, identifies the linking site and the capacity of the linkage, explains why the efficiency is not 100% in a practical tanning process and provides a new viewpoint on the crosslinking of the polychromium with the side chains of the collagen. read less NOT USED (high confidence) Y. Long and J. Chen, “A theoretical study of wave dispersion and thermal conduction for HMX/additive interfaces,” Modelling and Simulation in Materials Science and Engineering. 2014. link Times cited: 3 Abstract: The wave dispersion rule for non-uniform material is useful … read moreAbstract: The wave dispersion rule for non-uniform material is useful for ultrasonic inspection and engine life prediction, and also is key in achieving an understanding of the energy dissipation and thermal conduction properties of solid material. On the basis of linear response theory and molecular dynamics, we derive a set of formulas for calculating the wave dispersion rate of interface systems, and study four kinds of interfaces inside plastic bonded explosives: HMX/{HMX, TATB, F2312, F2313}. (HMX: octahydro-1,3,5,7-tetranitro-1,3,5,7-tetrazocine; TATB: 1,3,5-triamino-2,4,6-trinitrobenzene; F2312, F2313: fluoropolymers). The wave dispersion rate is obtained over a wide frequency range from kHz to PHz. We find that at low frequency, the rate is proportional to the square of the frequency, and at high frequency, the rate couples with the molecular vibration modes at the interface. By using the results, the thermal conductivities of HMX/additive interfaces are derived, and a physical model is built for describing the total thermal conductivity of mixture explosives, including HMX multi-particle systems and {TATB, F2312, F2313}-coated HMX. read less NOT USED (high confidence) X. Hu, R. Ciaglia, F. Pietrucci, G. A. Gallet, and W. Andreoni, “DFT-derived reactive potentials for the simulation of activated processes: the case of CdTe and CdTe:S.,” The journal of physical chemistry. B. 2014. link Times cited: 2 Abstract: We introduce a new ab initio derived reactive potential for … read moreAbstract: We introduce a new ab initio derived reactive potential for the simulation of CdTe within density functional theory (DFT) and apply it to calculate both static and dynamical properties of a number of systems (bulk solid, defective structures, liquid, surfaces) at finite temperature. In particular, we also consider cases with low sulfur concentration (CdTe:S). The analysis of DFT and classical molecular dynamics (MD) simulations performed with the same protocol leads to stringent performance tests and to a detailed comparison of the two schemes. Metadynamics techniques are used to empower both Car-Parrinello and classical molecular dynamics for the simulation of activated processes. For the latter, we consider surface reconstruction and sulfur diffusion in the bulk. The same procedures are applied using previously proposed force fields for CdTe and CdTeS materials, thus allowing for a detailed comparison of the various schemes. read less NOT USED (high confidence) J. Mueller, D. Fantauzzi, and T. Jacob, “Multiscale Modeling of Electrochemical Systems.” 2014. link Times cited: 9 Abstract: ing reliable information from molecular simulations depends … read moreAbstract: ing reliable information from molecular simulations depends on having a representative sample with respect to the properties or behaviors of interest. This typically requires equilibrating the system by performing dynamics until any biases in the initial configuration of the system have been randomized away. Following the equilibration period, measurements can be made on the further dynamics of the system. This further portion of the simulation must be extensive enough for the relevant regions of phase space to be adequately explored for satisfactory representation in the property extracted. Performing multiple simulations with independent initial configurations provides an alternative strategy for obtaining a statistically meaningful sampling of configuration space. A vast assortment of information, ranging from macroscopic thermodynamic properties to average structural properties to individual atomistic steps in reaction mechanisms, can be extracted from appropriate molecular simulations. Thermodynamic properties, such as temperature and pressure, are easily calculated from the atomic positions and momenta using their statistical mechanical definitions. Structural motifs can be extracted by calculating radial distribution functions for various atom types in the system, or assigning molecular bonding based on interatomic distances. Entropy and related properties can be extracted from the auto-correlation function [61–64]. read less NOT USED (high confidence) A. Galashev, “Computer study of the Raman spectra and infrared optical properties of gallium nitride and gallium arsenic nanoparticles with SiO2 core and shell,” Journal of Nanoparticle Research. 2014. link Times cited: 2 NOT USED (high confidence) Z. Zhang, X. Wang, and J. D. Lee, “An atomistic methodology of energy release rate for graphene at nanoscale,” Journal of Applied Physics. 2014. link Times cited: 30 Abstract: Graphene is a single layer of carbon atoms packed into a hon… read moreAbstract: Graphene is a single layer of carbon atoms packed into a honeycomb architecture, serving as a fundamental building block for electric devices. Understanding the fracture mechanism of graphene under various conditions is crucial for tailoring the electrical and mechanical properties of graphene-based devices at atomic scale. Although most of the fracture mechanics concepts, such as stress intensity factors, are not applicable in molecular dynamics simulation, energy release rate still remains to be a feasible and crucial physical quantity to characterize the fracture mechanical property of materials at nanoscale. This work introduces an atomistic simulation methodology, based on the energy release rate, as a tool to unveil the fracture mechanism of graphene at nanoscale. This methodology can be easily extended to any atomistic material system. We have investigated both opening mode and mixed mode at different temperatures. Simulation results show that the critical energy release rate of graphene is indepen... read less NOT USED (high confidence) K. Nordlund and F. Djurabekova, “Multiscale modelling of irradiation in nanostructures,” Journal of Computational Electronics. 2014. link Times cited: 42 NOT USED (high confidence) J. Kuo, P.-H. Huang, W.-T. Wu, and C.-M. Lu, “Mechanical and fracture behaviors of defective silicon nanowires: combined effects of vacancy clusters, temperature, wire size, and shape,” Applied Physics A. 2014. link Times cited: 18 NOT USED (high confidence) E. Sak-Saracino and H. Urbassek, “Free energies of austenite and martensite Fe–C alloys: an atomistic study,” Philosophical Magazine. 2014. link Times cited: 12 Abstract: We investigate the influence of C interstitials on the phase… read moreAbstract: We investigate the influence of C interstitials on the phase stability of Fe–C crystals. We employ the Meyer–Entel interatomic interaction potential which is able to reproduce the austenite-martensite phase transition for pure Fe, and supplement it by a simple pairwise Fe–C interaction potential. Using two different thermodynamic methods, we calculate the free energies of the martensite and austenite phases. We find that C destabilizes the ground-state bcc phase. The decrease in the equilibrium transformation temperature with increasing C content parallels the one found in the experiment. This destabilization is found even if C is added for a potential in which only the bcc phase is stable until the melting point; here, for sufficiently high C addition, a stable fcc phase is established in the phase diagram. read less NOT USED (high confidence) M. Khusenov, E. Dushanov, and K. Kholmurodov, “Molecular Dynamics Simulations of the DNA-CNT Interaction Process: Hybrid Quantum Chemistry Potential and Classical Trajectory Approach,” Journal of Modern Physics. 2014. link Times cited: 8 Abstract: In this work the quantum chemistry Tersoff potential in
com… read moreAbstract: In this work the quantum chemistry Tersoff potential in
combination with classical trajectory calculations was used to
investigate the interaction of the DNA molecule with a carbon nanotube (CNT).
The so-called hybrid approach—the classical and quantum-chemical modeling, where
the force fields and interaction between particles are based on a definite (but
not unique) description method, has been outlined in some detail. In such
approach the molecules are described as a set of spheres and springs, thereby
the spheres imitate classical particles and the spring the interaction force
fields provided by quantum chemistry laws. The Tersoff potential in hybrid
molecular dynamics (MD) simulations correctly describes the nature of covalent
bonding. The aim of the present work was to estimate the dynamical and
structural behavior of the DNA-CNT system at ambient temperature conditions.
The dynamical configurations were built up for the DNA molecule interacting
with the CNT. The analysis of generated МD configurations for the DNA-CNT
complex was carried out. For the DNA-CNT system the observations reveal an
encapsulation-like behavior of the DNA chain inside the CNT chain. The
discussions were made on possible use of the DNA-CNT complex as a candidate
material in drug delivery and related systems. read less NOT USED (high confidence) K. D. Krantzman, C. Briner, and B. Garrison, “Investigation of carbon buildup in simulations of multi-impact bombardment of Si with 20 keV C60 projectiles.,” The journal of physical chemistry. A. 2014. link Times cited: 6 Abstract: Beams of single C(+) ions are used for the incorporation of … read moreAbstract: Beams of single C(+) ions are used for the incorporation of Si in the synthesis of thin films of SiC, which have a wide range of technological applications. We present a theoretical investigation of the use of C60 cluster beams to produce thin films of SiC on a Si substrate, which demonstrates that there are potential advantages to using C60(+) cluster ion beams over C(+) single ion beams. Molecular dynamics simulations of the multi-impact bombardment of Si with 20 keV normal incident C60 projectiles are performed to study the buildup of carbon and the formation of a region of Si-C mixing up to a fluence of 1.6 impacts/nm(2) (900 impacts). The active region of the Si solid is defined as the portion of target that contains almost all of the C atoms and the height ranges from 3 nm to more than 7 nm below the average surface height. The C fraction in the active region is calculated as a function of fluence, and a simple model is developed to describe the dependence of the C fraction on fluence. An analytic function from this model is fit to the data from the molecular dynamics simulations and extrapolated to predict the fluence necessary to achieve equilibrium conditions in which the C fraction is constant with fluence. The fraction of C atoms at equilibrium is predicted to be 0.19, and the fluence necessary to achieve 90% of this asymptotic maximum value is equal to 4.0 impacts/nm(2). read less NOT USED (high confidence) X. A. Deng, Y. Song, J. Li, and Y. Pu, “Parametrization of the Stillinger-Weber potential for Si/N/H system and its application to simulations of silicon nitride film deposition with SiH4/NH3,” Journal of Applied Physics. 2014. link Times cited: 1 Abstract: We determined the Stillinger-Weber interatomic potential par… read moreAbstract: We determined the Stillinger-Weber interatomic potential parameters for Si/N/H system based on first principles density functional calculations. This new potential can be used to perform classical molecular dynamics simulation for silicon nitride deposition on Si substrate. During the first principles calculations, cluster models have been carefully and systematically chosen to make sampling of the interatomic potential supersurface more thoroughly. Global optimization method was used to fit the ab initio data into Stillinger-Weber form. We used a recursive method to perform the classical molecular dynamics simulations for silicon nitride (SiN) film growth on Si substrate with SiH4/NH3 gas mixtures. During the simulation, we could clearly observe the silicon nitride film growth progress. In this paper, we present the details of potential derivation and simulation results with different SiH4:NH3 ratios. It is demonstrated that this new potential is suitable to describe the surface reactions of the Si/N/H s... read less NOT USED (high confidence) X. Wang, “Molecular dynamics study of temperature behavior in a graphene nanoribbon,” Chemical Physics Letters. 2014. link Times cited: 5 NOT USED (high confidence) T. Han, Y. Luo, and C. Wang, “Effects of temperature and strain rate on the mechanical properties of hexagonal boron nitride nanosheets,” Journal of Physics D: Applied Physics. 2014. link Times cited: 106 Abstract: The effect of temperature and strain rate on mechanical prop… read moreAbstract: The effect of temperature and strain rate on mechanical properties remains an open topic in research of hexagonal boron nitride (h-BN) nanosheets. To examine these fundamental issues we have performed molecular dynamics simulations to record the stress–strain curves in tensile tests and measure Young's modulus, fracture strength and fracture strain in armchair and zigzag directions. Comparing the results obtained at different temperatures and strain rates we have quantified the effects of the two factors on the tensile properties of the h-BN nanosheets. The influence of crystal orientation is also examined in the present study. It is found that the h-BN nanosheets are basically an anisotropic material whose tensile properties vary substantially with temperature and strain rate. In particular, a yielding platform is observed for the h-BN nanomaterial at relatively low temperature. read less NOT USED (high confidence) N. Rajamanickam, S. Rajashabala, and K. Ramachandran, “Theoretical and experimental investigation on enhanced thermal behaviour in chunk-shaped nano ZnO,” Molecular Physics. 2014. link Times cited: 4 Abstract: Thermal properties of chunk-shaped ZnO nanostructures are st… read moreAbstract: Thermal properties of chunk-shaped ZnO nanostructures are studied for diffusivity, conductivity, and effusivity by photoacoustics (PA) and simulation methods. Thermal conductivity of nano ZnO was determined from simulation in the temperature range of 100–1000 K. Thermal conductivity of ZnO nanostructures at room temperature is approximately 52 and 128 times lower than that of bulk ZnO for PA and simulation, respectively. For simulation, Tersoff potential is used for the interatomic interaction. The velocity autocorrelation function and Green–Kubo relation are used to compute the thermal conductivity. read less NOT USED (high confidence) Y. Tian et al., “Transverse vibration analyses of cantilevered boron nitride nanocones,” Micro & Nano Letters. 2013. link Times cited: 1 Abstract: The free transverse vibration characteristics of cantilevere… read moreAbstract: The free transverse vibration characteristics of cantilevered boron nitride nanocones (BNNCs) have been systematically investigated by utilising classic molecular dynamics simulations. The natural frequencies of the transverse vibrations of cantilevered BNNCs with different apex angles, cone heights and top radii are achieved by using fast Fourier transformation. The influences of the geometric parameters of the BNNCs on the natural frequencies are extensively investigated based on the established methodology. read less NOT USED (high confidence) T. Yoon, T. Lim, T. Min, S. Hung, N. Jakse, and S. Lai, “Epitaxial growth of graphene on 6H-silicon carbide substrate by simulated annealing method.,” The Journal of chemical physics. 2013. link Times cited: 15 Abstract: We grew graphene epitaxially on 6H-SiC(0001) substrate by th… read moreAbstract: We grew graphene epitaxially on 6H-SiC(0001) substrate by the simulated annealing method. The mechanisms that govern the growth process were investigated by testing two empirical potentials, namely, the widely used Tersoff potential [J. Tersoff, Phys. Rev. B 39, 5566 (1989)] and its more refined version published years later by Erhart and Albe [Phys. Rev. B 71, 035211 (2005)]. Upon contrasting the results obtained by these two potentials, we found that the potential proposed by Erhart and Albe is generally more physical and realistic, since the annealing temperature at which the graphene structure just coming into view at approximately 1200 K is unambiguously predicted and close to the experimentally observed pit formation at 1298 K within which the graphene nucleates. We evaluated the reasonableness of our layers of graphene by calculating carbon-carbon (i) average bond-length, (ii) binding energy, and (iii) pair correlation function. Also, we compared with related experiments the various distance of separation parameters between the overlaid layers of graphene and substrate surface. read less NOT USED (high confidence) A. Galashev and V. Polukhin, “Computer simulation of thin nickel films on single-layer graphene,” Physics of the Solid State. 2013. link Times cited: 14 NOT USED (high confidence) M. Eftekhari, S. Mohammadi, and A. Khoei, “Effect of defects on the local shell buckling and post-buckling behavior of single and multi-walled carbon nanotubes,” Computational Materials Science. 2013. link Times cited: 48 NOT USED (high confidence) C. D. Cruz, N. A. Katcho, N. Mingo, and R. Veiga, “Thermal conductivity of nanocrystalline SiGe alloys using molecular dynamics simulations,” Journal of Applied Physics. 2013. link Times cited: 14 Abstract: We have studied the effect of nanocrystalline microstructure… read moreAbstract: We have studied the effect of nanocrystalline microstructure on the thermal conductivity of SiGe alloys using molecular dynamics simulations. Nanograins are modeled using both the coincidence site lattice and the Voronoi tessellation methods, and the thermal conductivity is computed using the Green-Kubo formalism. We analyze the dependence of the thermal conductivity with temperature, grain size L, and misorientation angle. We find a power dependence of L1/4 of the thermal conductivity with the grain size, instead of the linear dependence shown by non-alloyed nanograined systems. This dependence can be derived analytically underlines the important role that disorder scattering plays even when the grains are of the order of a few nm. This is in contrast to non-alloyed systems, where phonon transport is governed mainly by the boundary scattering. The temperature dependence is weak, in agreement with experimental measurements. The effect of angle misorientation is also small, which stresses the main role pla... read less NOT USED (high confidence) K. Henriksson, C. Björkas, and K. Nordlund, “Atomistic simulations of stainless steels: a many-body potential for the Fe–Cr–C system,” Journal of Physics: Condensed Matter. 2013. link Times cited: 65 Abstract: Stainless steels found in real-world applications usually ha… read moreAbstract: Stainless steels found in real-world applications usually have some C content in the base Fe–Cr alloy, resulting in hard and dislocation-pinning carbides—Fe3C (cementite) and Cr23C6—being present in the finished steel product. The higher complexity of the steel microstructure has implications, for example, for the elastic properties and the evolution of defects such as Frenkel pairs and dislocations. This makes it necessary to re-evaluate the effects of basic radiation phenomena and not simply to rely on results obtained from purely metallic Fe–Cr alloys. In this report, an analytical interatomic potential parameterization in the Abell–Brenner–Tersoff form for the entire Fe–Cr–C system is presented to enable such calculations. The potential reproduces, for example, the lattice parameter(s), formation energies and elastic properties of the principal Fe and Cr carbides (Fe3C, Fe5C2, Fe7C3, Cr3C2, Cr7C3, Cr23C6), the Fe–Cr mixing energy curve, formation energies of simple C point defects in Fe and Cr, and the martensite lattice anisotropy, with fair to excellent agreement with empirical results. Tests of the predictive power of the potential show, for example, that Fe–Cr nanowires and bulk samples become elastically stiffer with increasing Cr and C concentrations. High-concentration nanowires also fracture at shorter relative elongations than wires made of pure Fe. Also, tests with Fe3C inclusions show that these act as obstacles for edge dislocations moving through otherwise pure Fe. read less NOT USED (high confidence) X. Li and G. Zhang, “Enhancing the extremely high thermal conduction of graphene nanoribbons,” Frontiers in Physics. 2013. link Times cited: 5 Abstract: Graphene and Graphene nanoribbons (GNRs) are found to have s… read moreAbstract: Graphene and Graphene nanoribbons (GNRs) are found to have superior high thermal conductivity favorable for high-performance heat dissipation. In this letter, by using molecular dynamics simulations, we show that constructing specific structure can further enhance high thermal conduction of GNRs. By introducing a small gap at the center, the average heat flux (thermal conductivity) can be enhanced by up to 23%, the corresponding increase in total heat current is 16%. This unusual thermal conduction enhancement is achieved by an intriguing physical mechanism of suppress phonon-phonon scattering. Our findings uncover new mechanism to increase thermal conduction of GNRs. read less NOT USED (high confidence) H.-jun Shen, “Wrinkling deformation and thermal conductivity of one graphane sheet under shear,” Micro & Nano Letters. 2013. link Times cited: 5 Abstract: Molecular dynamics simulations were performed to investigate… read moreAbstract: Molecular dynamics simulations were performed to investigate the wrinkling deformation of one single-layer graphane (GA) sheet under shear, and the shear deformation was compared with that of the macromembrane under shear. Furthermore, the thermal conductivity of the wrinkled GA sheet at 300 K was calculated. Moreover, the differences of anti-shear capability and thermal conductance between the GA and another corresponding graphene sheet are discussed. The results show that the solutions of the macromembrane are applicable to predict the wrinkling deformation of the GA sheet under shear and that both the GA and the graphene sheet under shear have comparable anti-buckling capability, whereas the GA sheet has much lower post-buckling load-carrying capacity. By increasing the shear strain, the thermal conductivity of both the GA and the graphene sheets decreases, and under the same shear strain the graphene sheet has higher thermal conductivity than the GA sheet. read less NOT USED (high confidence) Y. Sasajima, J. Murakami, and A. M. Tamidi, “Computer Simulation of Precipitation Process in Si/Ge Amorphous Multi-Layer Films: Effects of Cu Addition,” Materials Transactions. 2013. link Times cited: 1 Abstract: We have simulated the precipitation process in an amorphous … read moreAbstract: We have simulated the precipitation process in an amorphous Si/Ge multi-layer film, with and without Cu addition, by a molecular dynamics method. Four specimens were prepared for this study: Si/Ge layers, Si/(Ge + Cu) layers, (Si + Cu)/(Ge + Cu) layers and Si/Cu/Ge/ Cu layers. After the multi-layered films became amorphous, we tracked the movement of individual atoms at 1000K, the annealing temperature. When Cu was present in the Ge layer or both the Si and Ge layers, the precipitation of nano-clusters was less than that in Cu-free Si/Ge layers. We think that the Cu atoms block the precipitation and make the Si and Ge become more stable in the amorphous state. If Cu atoms are note present in a layer, however, like the Si layer in Si/(Ge + Cu) and Si/Cu/Ge/Cu specimens, the precipitation of nano-clusters in the Cu-free layer is enhanced. Therefore we conclude that precipitation of nano-clusters in Si/Ge layers can be controlled by how Cu atoms are added to the amorphous Si/Ge system, and that this will improve the thermoelectric performance. [doi:10.2320/matertrans.M2013191] read less NOT USED (high confidence) J. Yeo, Z. S. Liu, and T. Ng, “Enhanced thermal characterization of silica aerogels through molecular dynamics simulation,” Modelling and Simulation in Materials Science and Engineering. 2013. link Times cited: 29 Abstract: Porous structures of silica aerogels are generated using cla… read moreAbstract: Porous structures of silica aerogels are generated using classical molecular dynamics, with the Tersoff potential, which has been re-parametrized for modeling silicon dioxides. This work demonstrates that this potential is superior to the widely used BKS potential in terms of characterizing the thermal conductivities of amorphous silica, by comparing the vibrational density of states with previous experimental studies. Aerogel samples of increasing densities are obtained through an expanding, heating and quenching process. Reverse non-equilibrium molecular dynamics is applied at each density to determine the thermal conductivity. A power-law fit of the results is found to accurately reflect the power-law variation found in experimental bulk aerogels. The results are also of the same order of magnitude as experimental bulk aerogels, but they are consistently higher. By analyzing the pore size distribution on different simulation length scales, we show that such a disparity is due to finite sizes of pores that can be represented, where increasing simulation length scales lead to an increase in the largest pore size that can be modeled. read less NOT USED (high confidence) V. Bocchetti, H. Diep, H. Enriquez, H. Oughaddou, and A. Kara, “Thermal stability of standalone silicene sheet,” Journal of Physics: Conference Series. 2013. link Times cited: 14 Abstract: Extensive Monte Carlo simulations are carried out to study t… read moreAbstract: Extensive Monte Carlo simulations are carried out to study thermal stability of an infinite standalone silicon sheet. We used the Tersoff potential that has been used with success for silicon at low temperatures. However, the melting temperature Tm calculated with the original parameters provided by Tersoff is too high with respect to the experimental one. Agrawal, Raff and Komanduri have proposed a modified set of parameters to reduce Tm. For comparison, we have used these two sets of parameters to study the stability and the melting of a standalone 2D sheet of silicon called "silicene", by analogy with graphene for the carbon sheet. We find that 2D crystalline silicene is stable up to a high temperature unlike in 2D systems with isotropic potentials such as Lennard-Jones. The differences in the obtained results using two sets of parameters are striking. read less NOT USED (high confidence) P. Käshammer and T. Sinno, “Interactions of twin boundaries with intrinsic point defects and carbon in silicon,” Journal of Applied Physics. 2013. link Times cited: 22 Abstract: Although multicrystalline silicon (mc-Si) is currently the m… read moreAbstract: Although multicrystalline silicon (mc-Si) is currently the most widely used material for fabricating photovoltaic cells, its electrical properties remain limited by several types of defects, which interact in complex ways that are not yet fully understood. A particularly important phenomenon is the interaction between grain boundaries and intrinsic point defects or impurity atoms, such as carbon, oxygen, nitrogen, and various types of metals. Here, we use empirical molecular dynamics to study the interactions of Σ3{111}, Σ9{221}, and Σ27{552} twin boundaries, which account for over 50% of all grain boundaries in mc-Si, with self-interstitials, vacancies, and substitutional carbon atoms. It is shown that twin boundary-point defect interaction energies increase with twinning order and that they are predominantly attractive. We also find that twin boundary interactions with substitutional carbon are highly spatially heterogeneous, exhibiting alternating repulsive-attractive regions that correlate strongly wi... read less NOT USED (high confidence) A. Marconnet, M. Panzer, and K. Goodson, “Thermal conduction phenomena in carbon nanotubes and related nanostructured materials,” Reviews of Modern Physics. 2013. link Times cited: 350 Abstract: The extremely high thermal conductivities of carbon nanotube… read moreAbstract: The extremely high thermal conductivities of carbon nanotubes have motivated a wealth of research. Progress includes innovative conduction metrology based on microfabricated platforms and scanning thermal probes as well as simulations exploring phonon dispersion and scattering using both transport theory and molecular dynamics. This article highlights these advancements as part of a detailed review of heat conduction research on both individual carbon nanotubes and nanostructured films consisting of arrays of nanotubes or disordered nanotube mats. Nanotube length, diameter, and chirality strongly influence the thermal conductivities of individual nanotubes and the transition from primarily diffusive to ballistic heat transport with decreasing temperature. A key experimental challenge, for both individual nanotubes and aligned films, is the separation of intrinsic and contact resistances. Molecular dynamics simulations have studied the impacts of specific types of imperfections on the nanotube conductance and its variation with length and chirality. While the properties of aligned films fall short of predictions based on individual nanotube data, improvements in surface engagement and postfabrication nanotube quality are promising for a variety of applications including mechanically compliant thermal contacts. read less NOT USED (high confidence) M. Lai, X. Zhang, and F. Fang, “Nanoindentation-induced phase transformation and structural deformation of monocrystalline germanium: a molecular dynamics simulation investigation,” Nanoscale Research Letters. 2013. link Times cited: 25 NOT USED (high confidence) X. Li, M. Joe, A. Wang, and K.-R. Lee, “Stress reduction of diamond-like carbon by Si incorporation: A molecular dynamics study,” Surface & Coatings Technology. 2013. link Times cited: 24 NOT USED (high confidence) H. Li and R. Zhang, “Size-dependent structural characteristics and phonon thermal transport in silicon nanoclusters,” AIP Advances. 2013. link Times cited: 5 Abstract: We investigate the size effects on the structures and therma… read moreAbstract: We investigate the size effects on the structures and thermal conductivity of silicon nanoclusters (SiNCs) using molecular dynamics simulations. We demonstrate that as the diameter of the SiNCs increases from 1.80 nm to 3.46 nm, the cluster structure changes from an amorphous state to a crystalline state at 300 K, which is in good agreement with the experimental findings. Our calculated thermal conductivity of the SiNCs shows a size-dependent effect due to the remarkable phonon-boundary scattering and can be about three orders of magnitude lower than that of bulk Si. read less NOT USED (high confidence) A. Galashev, “Computer study of the spectral characteristics and structures of (GaN)54(SiO2)50 nanoparticles,” Journal of Surface Investigation. X-ray, Synchrotron and Neutron Techniques. 2013. link Times cited: 2 NOT USED (high confidence) N. Liao, W. Xue, H. Zhou, and M. Zhang, “Numerical investigation into the nanostructure and mechanical properties of amorphous SiBCN ceramics,” RSC Advances. 2013. link Times cited: 10 Abstract: Siliconboron carbonitride ceramics possess exceptional high-… read moreAbstract: Siliconboron carbonitride ceramics possess exceptional high-temperature stability, creep resistance and electrical properties, thus are promising materials for use as coatings, membranes, high temperature fibers and in microelectronics. However, using experiments to investigate the nanostructures and high temperature mechanical properties of SiBCN ceramics is very challenging. In this work, large-scale molecular dynamics simulations were used to study the effects of N content on the structural and mechanical properties of SiBCN ceramics. A melt-quench method was used to generate amorphous structures of SiBCN, and the resulting nanostructure, pair distribution functions and angular distribution functions are consistent with the experimental results from XPS, X-ray diffraction and TEM. The calculated Young's moduli are close to the experimental data values, and the structure with the optimal N content presents the largest Young's modulus. The simulation results give a key insight into the nanostructure and mechanical properties of SiBCN ceramics with different compositions. read less NOT USED (high confidence) L. Pereira, I. Savi’c, and D. Donadio, “Thermal conductivity of one-, two- and three-dimensional sp2 carbon,” New Journal of Physics. 2013. link Times cited: 27 Abstract: Carbon atoms can form structures in one, two and three dimen… read moreAbstract: Carbon atoms can form structures in one, two and three dimensions due to their unique chemical versatility. In terms of thermal conductivity, carbon polymorphs cover a wide range from very low values with amorphous carbon to very high values with diamond, carbon nanotubes and graphene. Schwarzites are a class of three-dimensional fully covalent sp2-bonded carbon polymorphs, with the same local chemical environment as graphene and carbon nanotubes, but negative Gaussian curvature. We calculate the thermal conductivity of a (10,0) carbon nanotube, graphene and two schwarzites with different curvature, by molecular dynamics simulations based on the Tersoff empirical potential. We find that schwarzites present a thermal conductivity two orders of magnitude smaller than nanotubes and graphene. The reason for such large difference is explained by anharmonic lattice dynamics calculations, which show that phonon group velocities and mean free paths are much smaller in schwarzites than in nanotubes and graphene. Their reduced thermal conductivity, in addition to tunable electronic properties, indicate that schwarzites could pave the way towards all-carbon thermoelectric technology with high conversion efficiency. read less NOT USED (high confidence) A. N. Karpov, E. M. Trukhanov, and N. Shwartz, “Modeling of misft dislocation creation at Ge island — Si(111) substrate interface,” 2013 14th International Conference of Young Specialists on Micro/Nanotechnologies and Electron Devices. 2013. link Times cited: 0 Abstract: The sizes of Ge island on Si(111) surface corresponding to i… read moreAbstract: The sizes of Ge island on Si(111) surface corresponding to introduction of misft dislocation were determined by modeling. The critical thickness of pseudomorphic Ge layer was demonstrated to be 2 bilayers with lateral island size exceeded 60 nm when creation of misft dislocations became energy-favorable. read less NOT USED (high confidence) J. Zhang, C. Liu, and J. Fan, “Comparison of Cu thin films deposited on Si substrates with different surfaces and temperatures,” Applied Surface Science. 2013. link Times cited: 22 NOT USED (high confidence) V. Y. Bohn, M. Piccolo, and G. Perillo, “Características bio-ópticas y morfometría de una laguna de zona templada.” 2013. link Times cited: 2 Abstract: The aim of this study was to evaluate the correlation betwee… read moreAbstract: The aim of this study was to evaluate the correlation between field sensors and sate - llite images in the bio-optical characterization of Lake Chasico (Argentina) during the February-April 2010 period. The morphometric parameters of the body of water were obtained from in situ measurements and satellite data processing. The sensors that were used allowed spectral signatures to be acquired and then surface water characteristics were detected: turbidity, chlorophyll-a and depth variations. Results obtained from the morphometric analysis included that the lake surpassed the 50 km 2 extension and showed a sub-rectangular elongated shape. The chlorophyll-a spatial distribution in the lake was modeled from the satellite image processing, in situ chlorophyll-a data and the Normalized Difference Vegetation Index (NDVI) calculation. 53.2 % of its area showed a chlorophyll-a range between 5 and 10 g/l. Therefore, the body of water was characterized as a mesotrophic lake, during the studied period. read less NOT USED (high confidence) Y. Long and J. Chen, “The heat dissipation model and desensitizing mechanism of the HMX/additive interfaces: a theoretical investigation based on linear response theory,” Modelling and Simulation in Materials Science and Engineering. 2013. link Times cited: 2 Abstract: Octahydro-1,3,5,7-tetranitro-1,3,5,7-tetrazocine (HMX) is a … read moreAbstract: Octahydro-1,3,5,7-tetranitro-1,3,5,7-tetrazocine (HMX) is a high-energy explosive with high sensitivity. The heat dissipation of the HMX/additive interface is a key issue in understanding the hot spot formation and desensitizing mechanism of mixture explosive. In this work, we derive new formulae to calculate the heat dissipation rate for a set of HMX/additive interfaces, and build a physical model to describe the energy dissipation time and distance in mixture explosive. Four kinds of additives are considered: 1,3,5-triamino-2,4,6-trinitrobenzene, graphite, paraffin and fluoropolymers. At low strength loading, we prove that the heat dissipation rate is proportional to the square of frequency, and suggest a way to decrease the sensitivity of the explosive. At medium strength loading, the viscosity coefficient and friction coefficient of interface are calculated. The desensitizing abilities of additives to HMX are discussed systematically. read less NOT USED (high confidence) H. Detz and G. Strasser, “Modeling the elastic properties of the ternary III–V alloys InGaAs, InAlAs and GaAsSb using Tersoff potentials for binary compounds,” Semiconductor Science and Technology. 2013. link Times cited: 9 Abstract: This work evaluates the suitability of the empirical Tersoff… read moreAbstract: This work evaluates the suitability of the empirical Tersoff potential for structural calculations in ternary III–V alloys, using parameter sets for the corresponding binary compounds. In particular, the elastic properties of randomly alloyed InxGa1 − xAs, InxAl1 − xAs and GaAs1 − xSbx are compared to values obtained experimentally over the whole composition range. Different In–As interactions were evaluated for InxGa1 − xAs to provide an optimum fit around the technologically relevant composition of 53% In, required for lattice-matching with InP substrates. The experimental values of the bulk modulus were reproduced with an error well below 5% for all three ternaries, while the calculations led to deviations in the shear modulus of up to 13%. For the particular compositions, lattice-matched to InP, the error in the bulk modulus is well below 2%, while for the shear modulus an error around 10% has to be expected, according to this analysis. read less NOT USED (high confidence) C. Zhang, F. Mao, and F.-S. Zhang, “Electron–ion coupling effects on radiation damage in cubic silicon carbide,” Journal of Physics: Condensed Matter. 2013. link Times cited: 13 Abstract: A two-temperature model has been used to investigate the eff… read moreAbstract: A two-temperature model has been used to investigate the effects of electron–ion coupling on defect formation and evolution in irradiated cubic silicon carbide. By simulating 10 keV displacement cascades under identical primary knock-on atom conditions, we find that the final displacement and the kinetic energy of the primary knock-on atom decrease rapidly with increasing electron–ion coupling strength. Moreover, by analyzing the number of peak defects, atomic and electronic temperatures, it is found that a higher number of peak defects is created for intermediate coupling strength due to the electronic temperature making a contribution to the disorder. Strong electron–ion coupling rapidly removes energy from the cascade, thus the number of peak defects is lower. Meanwhile, there is a non-monotonic trend in the relationship between the coupling strength and the time at which the temperature of atoms reaches the minimum. Furthermore, we discuss the mechanisms involved. read less NOT USED (high confidence) H. Karamitaheri, N. Neophytou, and H. Kosina, “Ballistic Phonon Transport in Ultra-Thin Silicon Layers: Effects of Confinement and Orientation,” arXiv: Mesoscale and Nanoscale Physics. 2013. link Times cited: 16 Abstract: We investigate the effect of confinement and orientation on … read moreAbstract: We investigate the effect of confinement and orientation on the phonon transport properties of ultra-thin silicon layers of thicknesses between 1 nm-16 nm. We employ the modified valence force field method to model the lattice dynamics and the ballistic Landauer transport formalism to calculate the thermal conductance. We consider the major thin layer surface orientations {100}, {110}, {111}, and {112}. For every surface orientation, we study thermal conductance as a function of the transport direction within the corresponding surface plane. We find that the ballistic thermal conductance in the thin layers is anisotropic, with the {110}/ channels exhibiting the highest and the {112}/ channels the lowest thermal conductance with a ratio of about two. We find that in the case of the {110} and {112} surfaces, different transport orientations can result in ~50% anisotropy in thermal conductance. The thermal conductance of different transport orientations in the {100} and {111} layers, on the other hand, is mostly isotropic. These observations are invariant under different temperatures and layer thicknesses. We show that this behavior originates from the differences in the phonon group velocities, whereas the phonon density of states is very similar for all the thin layers examined. We finally show how the phonon velocities can be understood from the phonon spectrum of each channel. Our findings could be useful in the design of the thermal properties of ultra-thin Si layers for thermoelectric and thermal management applications. read less NOT USED (high confidence) S. Kiselev and E. V. Zhirov, “Molecular dynamics simulation of deformation and fracture of graphene under uniaxial tension,” Physical Mesomechanics. 2013. link Times cited: 16 NOT USED (high confidence) X. Zhang, M. Hu, and D. Tang, “Thermal rectification at silicon/horizontally aligned carbon nanotube interfaces,” Journal of Applied Physics. 2013. link Times cited: 46 Abstract: Non-equilibrium molecular dynamics simulations were performe… read moreAbstract: Non-equilibrium molecular dynamics simulations were performed to investigate the thermal rectification effect of a system composed of a 400 nm long horizontally aligned single-walled (10, 10) carbon nanotube (CNT) and Si substrate. By imposing a series of positive and negative heat currents across the interface, a thermal rectification effect was observed. The maximum thermal rectification is about 184% when the interfacial heat flux is 60 W/m, which is very promising for thermal rectifier applications. By phonon-related analysis, we found that for heat flowing from Si to CNT, the increase of the interfacial thermal conductance with heat flux is due to the better match of phonon density of states between CNT and Si substrate at broad moderate frequencies, while for heat flowing from CNT to Si, the low-frequency phonon modes excited at large heat fluxes dominate the interfacial heat transfer and such low-frequency phonon mode mechanism is responsible for the thermal rectification effect. Moreover, we propo... read less NOT USED (high confidence) V. Sorkin, Z. Sha, P. S. Branicio, Q. Pei, and Y. W. Zhang, “Atomistic Molecular Dynamics Study of Structural and Thermomechanical Properties of Zdol Lubricants on Hydrogenated Diamond-Like Carbon,” IEEE Transactions on Magnetics. 2013. link Times cited: 8 Abstract: Using atomistic (all-atom) molecular dynamics simulations wi… read moreAbstract: Using atomistic (all-atom) molecular dynamics simulations with COMPASS force-field, we study the structural and thermomechanical properties of Zdol lubricants accommodated on a hydrogenated diamond-like carbon substrate. It is found that the lubricant molecules form a distinct layered structure near the substrate surface. The thickness of each layer and the location of each density maximum depend on temperature. The computed radius of gyration shows a strong anisotropy near the substrate surface and both parallel and perpendicular components of the radius of gyration increase with increasing temperature. In addition, it is found that the lubricant diffusion coefficient is also anisotropic with the component parallel to the surface being larger than the perpendicular one, and both increase with the lubricant film thickness. Using the calculated diffusion coefficients, we extract the activation energies for lubricant diffusion. We also qualitatively compare the present all-atom simulations with the previous coarse-grained simulations. read less NOT USED (high confidence) Y. Hayashi, R. Banal, M. Funato, and Y. Kawakami, “Heteroepitaxy between wurtzite and corundum materials,” Journal of Applied Physics. 2013. link Times cited: 15 Abstract: Heteroepitaxy of wurtzite semiconductors on corundum substra… read moreAbstract: Heteroepitaxy of wurtzite semiconductors on corundum substrates is widely used in modern optoelectronic devices, because both crystals belong to the same hexagonal close-packed system. However, the constituent atoms in the wurtzite structure align in an ideal hexagon within the (0001) plane, whereas those in the corundum structure are displaced due to empty octahedral sites. Herein, we demonstrate that this atomic arrangement mismatch at the interface generates low-angle grain boundaries in epilayers, and step bunching of corundum substrates with an even number of molecular layers can eliminate the boundaries. Furthermore, we propose that the weakened epitaxial relationship between epilayers and substrates also eliminates low-angle grain boundaries, which may be useful for practical applications. read less NOT USED (high confidence) W. Song and S.-jin Zhao, “Development of the ReaxFF reactive force field for aluminum–molybdenum alloy,” Journal of Materials Research. 2013. link Times cited: 10 Abstract: We have developed a reactive force field within the ReaxFF f… read moreAbstract: We have developed a reactive force field within the ReaxFF framework to accurately describe reactions involving aluminum–molybdenum alloy, which are part parameters of Al–O–Mo ternary system metastable intermolecular composites. The parameters are optimized from a training set, whose data come from density functional theory (DFT) calculations and experimental value, such as heat of formation, geometry data, and equation of states, which are reproduced well by ReaxFF. Body-centered cubic molybdenum’s surface energy, vacancy formation, and two transformational paths, Bain and trigonal paths are calculated to validate the ReaxFF ability describing the defects and deformations. Some structures’ elastic constant and phonon are calculated by DFT and ReaxFF to predict the structures’ mechanics and kinetic stability. All those results indicate that the fitted parameters can describe the energy difference of various structures under various circumstances and generally represent the diffusion property but cannot reproduce the elasticity and phonon spectra so well. read less NOT USED (high confidence) N. Liao, W. Xue, H. Zhou, and M. Zhang, “Investigation on high temperature fracture properties of amorphous silicon dioxide by large-scale atomistic simulations,” Journal of Materials Science: Materials in Electronics. 2013. link Times cited: 4 NOT USED (high confidence) S. Zhao and J. Xue, “Mechanical properties of hybrid graphene and hexagonal boron nitride sheets as revealed by molecular dynamic simulations,” Journal of Physics D: Applied Physics. 2013. link Times cited: 124 Abstract: Molecular dynamic simulations are performed to investigate t… read moreAbstract: Molecular dynamic simulations are performed to investigate the mechanical properties of hybrid graphene and hexagonal boron nitrogen (h-BN) sheet with the concentration of BN ranging from 0% to 100%. We find that Young's modulus of the hybrid sheet decreases with increasing concentration of BN, irrespective of BN shapes and distributions. However, a little mixing of h-BN and graphene can result in a noticeable drop in the yield strength of the hybrid sheet. In addition, the hybrid sheet exhibits strong plasticity behaviour during the tensile loading, which is not observed in pure graphene and BN sheets. We further demonstrate that this behaviour can be interpreted by the fact that the interface between the BN domain and graphene governs the failure mechanism of the hybrid sheet, which can be approximated by the classical Griffith model. Our results suggest that the mechanical properties of the hybrid graphene–BN sheet should be considered carefully when evaluating its whole performance when it is used in bandgap-engineered applications such as electronics and optics. read less NOT USED (high confidence) S. Kiselev and E. V. Zhirov, “Molecular dynamics simulation of deformation and fracture of graphene under uniaxial tension,” Physical Mesomechanics. 2013. link Times cited: 0 NOT USED (high confidence) H. Wang, J. Gong, Y. Pei, and Z. Xu, “Thermal transfer in graphene-interfaced materials: contact resistance and interface engineering.,” ACS applied materials & interfaces. 2013. link Times cited: 41 Abstract: We investigate here heat transfer across interfaces consisti… read moreAbstract: We investigate here heat transfer across interfaces consisting of single- and few-layer graphene sheets between silicon carbides by performing nonequilibrium molecular dynamics simulations. The interfacial thermal conducitivity κI is calculated by considering graphene layers as an interfacial phase. The results indicate that κI decreases with its thickness and heat flux but increases with the environmental temperature. Interface engineering of κI is explored by intercalating molecules between graphene layers. These guest molecules decouple electronic states across the interface, but tune κI slightly, leading to a thermally transparent but electronically insulating interface. These results provide a fundamental understanding in thermal transport across weakly bound interfaces, and design recipes for multifunctional thermal interface materials, composites and thermal management in graphene-based devices. read less NOT USED (high confidence) E. Despiau-Pujo, A. Davydova, G. Cunge, L. Delfour, L. Magaud, and D. Graves, “Elementary processes of H2 plasma-graphene interaction: A combined molecular dynamics and density functional theory study,” Journal of Applied Physics. 2013. link Times cited: 35 Abstract: Elementary interactions between H atoms and monolayer graphe… read moreAbstract: Elementary interactions between H atoms and monolayer graphene are investigated using classical molecular dynamics (CMD) and density functional theory (DFT). C-H interatomic potential curves and associated energy barriers are reported depending on the H impact position (top, bridge, hollow, vacancy, or edge sites of graphene nanoribbons). Chemisorption of atomic hydrogen and formation of molecular hydrogen from chemisorbed H states on graphene are examined. The influence of graphene temperature and incident species energy on adsorption, reflection, and penetration mechanisms is also presented. Except for impacts at graphene nanoribbon (GNR) edges or at defect locations, H atoms are shown to experience a repulsive force due to delocalized π-electrons which prevents any species with less than 0.4-0.6 eV to chemisorb on the graphene surface. C-H bond formation requires a local sp2-sp3 rehybridization resulting in structural changes of the graphene sample. Chemisorption sites with deep potential wells and no ... read less NOT USED (high confidence) Y. Wen, X. Liu, X. Duan, K. Cho, R. Chen, and B. Shan, “Theoretical study of sp2-sp3 hybridized carbon network for Li-ion battery anode,” Journal of Physical Chemistry C. 2013. link Times cited: 14 Abstract: We discover through first-principles calculations a new type… read moreAbstract: We discover through first-principles calculations a new type of nanoporous carbon network structure formed out of small diameter nanotubes that features unique sp2-sp3 bonding hybridizations and highly ordered 1-D channels for Li-ion diffusion. Unlike other graphitic materials that are primarily bonded by intertube/interlayer van der Waals forces, the predicted sp2-sp3 hybridized carbon networks (HCNs) are held together by strong sp3 covalent bonding at the junctions, with sp2-hybridized interconnects providing conducting π-electrons near the Fermi level. With well-aligned and size-tunable 1-D nanopores, we show that besides desirable high Li capacity, stable Li-ion intercalation voltage profile, and low diffusion barriers, the volumetric change of HCN between fully lithiated/delithiated phases is <1%, making it a very promising Li-ion battery anode candidate. read less NOT USED (high confidence) A. Galashev and O. Rakhmanova, “Temperature changes of the optical properties of (SiO2)n, (GaAs)m, and (SiO2)n(GaAs)m nanoparticles: Computer experiment,” High Temperature. 2013. link Times cited: 6 NOT USED (high confidence) E. Andritsos et al., “The heat capacity of matter beyond the Dulong–Petit value,” Journal of Physics: Condensed Matter. 2013. link Times cited: 47 Abstract: We propose a simple new way to evaluate the effect of anharm… read moreAbstract: We propose a simple new way to evaluate the effect of anharmonicity on a system’s thermodynamic functions, such as heat capacity. In this approach, the contribution of all the potentially complicated anharmonic effects to the constant-volume heat capacity is evaluated using one parameter only: the coefficient of thermal expansion. Importantly, this approach is applicable not only to crystals, but also to glasses and viscous liquids. To support this proposal, we perform molecular dynamics simulations of several crystalline and amorphous solids as well as liquids, and find a good agreement between the results from theory and simulations. We observe an interesting non-monotonic behavior of the liquid heat capacity with a maximum, and explain this effect as being a result of competition between anharmonicity at low temperature and decreasing number of transverse modes at high temperature. read less NOT USED (high confidence) P. Yang, X. Li, H. Yang, X. Wang, Y. Tang, and X. Yuan, “Numerical investigation on thermal conductivity and thermal rectification in graphene through nitrogen-doping engineering,” Applied Physics A. 2013. link Times cited: 28 NOT USED (high confidence) P. Schmidt, “Quantum characteristics of the hydrogen bond,” Molecular Physics. 2013. link Times cited: 1 Abstract: Most analyses of hydrogen bond strengths and dynamics (e.g. … read moreAbstract: Most analyses of hydrogen bond strengths and dynamics (e.g. vibrational spectroscopy and transport) have been considered in terms of (model) potential energy functions defined at the Born–Oppenheimer level of approximation. This paper reports an analysis of the quantum dynamics of hydrogen in the bond that focuses on the quantum ground state of the binding hydrogen in the fields of the other atoms. In view of its mass and size, hydrogen is delocalized in its bond much as is the electron in a covalent bond. It is shown, under certain circumstances, that the compression of the A–B distance, with hydrogen in the A–H–B bond space, yields a flatter effective A–B bond potential due to the reduction of hydrogen density along the direct AB bond line. The quantum behaviour of bonding hydrogen also influences dynamical processes such as vibrational spectroscopy and hydrogen or proton transport. †Also Adjunct Professor, Department of Physics and Atmospheric Science, Dalhousie University, Halifax, NS B3H 3J5 Canada. read less NOT USED (high confidence) G. Slotman and A. Fasolino, “Structure, stability and defects of single layer hexagonal BN in comparison to graphene,” Journal of Physics: Condensed Matter. 2013. link Times cited: 58 Abstract: We study by molecular dynamics the structural properties of … read moreAbstract: We study by molecular dynamics the structural properties of single layer hexagonal boron nitride (h-BN) in comparison to graphene. We show that the Tersoff bond order potential developed for BN by Albe et al (1997 Radiat. Eff. Defects Solids 141 85–97) gives a thermally stable hexagonal single layer with a bending constant κ = 0.54 eV at T = 0. We find that the non-monotonic behaviour of the lattice parameter, the expansion of the interatomic distance and the growth of the bending rigidity with temperature are qualitatively similar to those of graphene. Conversely, the energetics of point defects is extremely different: instead of Stone–Wales defects, the two lowest energy defects in h-BN involve either a broken bond or an out-of-plane displacement of a N atom to form a tetrahedron with three B atoms in the plane. We provide the formation energies and an estimate of the energy barriers. read less NOT USED (high confidence) L. Pastewka, A. Klemenz, P. Gumbsch, and M. Moseler, “Screened empirical bond-order potentials for Si-C,” Physical Review B. 2013. link Times cited: 110 Abstract: Typical empirical bond-order potentials are short ranged and… read moreAbstract: Typical empirical bond-order potentials are short ranged and give ductile instead of brittle behavior for materials such as crystalline silicon or diamond. Screening functions can be used to increase the range of these potentials. We outline a general procedure to combine screening functions with bond-order potentials that does not require to refit any of the potential's properties. We use this approach to modify Tersoff's [Phys. Rev. B 39, 5566 (1989)], Erhart & Albe's [Phys. Rev. B 71, 35211 (2005)] and Kumagai et al.'s [Comp. Mater. Sci. 39, 457 (2007)] Si, C and Si-C potentials. The resulting potential formulations correctly reproduce brittle materials response, and give an improved description of amorphous phases. read less NOT USED (high confidence) J. Schall and J. Harrison, “Reactive Bond-Order Potential for Si-, C-, and H-Containing Materials,” Journal of Physical Chemistry C. 2013. link Times cited: 8 Abstract: A new bond-order potential for modeling systems containing s… read moreAbstract: A new bond-order potential for modeling systems containing silicon, carbon, and hydrogen, such as organosilicon molecules (CxSiyHz), solid silicon, solid carbon, and alloys of silicon and carbon, is presented. This reactive potential utilizes the formalism of the second-generation reactive empirical bond-order potential (REBO) [Brenner et al. J. Phys.: Condens. Matter 2002, 14, 783] for hydrocarbons and the REBO parameters for silicon [Schall, Gao, Harrison. Phys. Rev. B 2008, 77, 115209]. Modifications to the hydrocarbon REBO potential were made to improve the description of three-atom type systems. The widespread use of Brenner’s REBO potential, its ability to model a wide range of hydrocarbon materials, and the existence of parameters for several atom types are some of the motivating factors for obtaining this Si–C–H (2B-SiCH) parametrization. The usefulness and flexibility of this potential is demonstrated by examining the properties of organosilicon molecules, the bulk, surface, and defect properties... read less NOT USED (high confidence) L. Pizzagalli et al., “A new parametrization of the Stillinger–Weber potential for an improved description of defects and plasticity of silicon,” Journal of Physics: Condensed Matter. 2013. link Times cited: 66 Abstract: A new parametrization of the widely used Stillinger–Weber po… read moreAbstract: A new parametrization of the widely used Stillinger–Weber potential is proposed for silicon, allowing for an improved modelling of defects and plasticity-related properties. The performance of the new potential is compared to the original version, as well as to another parametrization (Vink et al 2001 J. Non-Cryst. Solids, 282 248), in the case of several situations: point defects and dislocation core stability, threshold displacement energies, bulk shear, generalized stacking fault energy surfaces, fracture, melting temperature, amorphous structure, and crystalline phase stability. A significant improvement is obtained in the case of dislocation cores, bulk behaviour under high shear stress, the amorphous structure, and computation of threshold displacement energies, while most of the features of the original version (elastic constants, point defects) are retained. However, despite a slight improvement, a complex process like fracture remains difficult to model. read less NOT USED (high confidence) M. Lai, X. Zhang, F. Fang, Y. Wang, M. Feng, and W. Tian, “Study on nanometric cutting of germanium by molecular dynamics simulation,” Nanoscale Research Letters. 2013. link Times cited: 65 NOT USED (high confidence) D. Ward, X. W. Zhou, B. M. Wong, F. Doty, and J. Zimmerman, “Analytical bond-order potential for the Cd-Zn-Te ternary system,” Physical Review B. 2012. link Times cited: 32 Abstract: CdTe/CdSe core/shell structured quantum dots do not suffer f… read moreAbstract: CdTe/CdSe core/shell structured quantum dots do not suffer from the defects typically seen in lattice-mismatched films and can therefore lead to improved solid-state lighting devices as compared to the multilayered structures (e.g., InxGa1–xN/GaN). To achieve these devices, however, the quantum dots must be optimized with respect to the structural details at an atomistic level. Molecular dynamics simulations are effective for exploring nano structures at a resolution unattainable by experimental techniques. To enable accurate molecular dynamics simulations of CdTe/CdSe core/shell structures, we have developed a full Cd–Te–Se ternary bond-order potential based on the analytical formalisms derived from quantum mechanical theories by Pettifor et al. A variety of elemental and compound configurations (with coordination varying from 1 to 12) including small clusters, bulk lattices, defects, and surfaces are explicitly considered during potential parametrization. More importantly, enormous iterations are perfor... read less NOT USED (high confidence) P. Howell, “Comparison of molecular dynamics methods and interatomic potentials for calculating the thermal conductivity of silicon.,” The Journal of chemical physics. 2012. link Times cited: 74 Abstract: We compare the molecular dynamics Green-Kubo and direct meth… read moreAbstract: We compare the molecular dynamics Green-Kubo and direct methods for calculating thermal conductivity κ, using as a test case crystalline silicon at temperatures T in the range 500-1000 K (classical regime). We pay careful attention to the convergence with respect to simulation size and duration and to the procedures used to fit the simulation data. We show that in the Green-Kubo method the heat current autocorrelation function is characterized by three decay processes, of which the slowest lasts several tens of picoseconds so that convergence requires several tens of nanoseconds of data. Using the Stillinger-Weber potential we find excellent agreement between the two methods. We also use the direct method to calculate κ(T) for the Tersoff potential and find that the magnitude and the temperature-dependence are different for the two potentials and that neither potential agrees with experimental data. We argue that this implies that using the Stillinger-Weber or Tersoff potentials to predict trends in kappa as some system parameter is varied may yield results which are specific to the potential but not intrinsic to Si. read less NOT USED (high confidence) T. Yamaguchi and K. Saitoh, “Molecular Dynamics Study on Mechanical Properties in the Structure of Self-Assembled Quantum Dot,” World Journal of Nano Science and Engineering. 2012. link Times cited: 1 Abstract: Stress and strain in the structure of self-assembled quantum… read moreAbstract: Stress and strain in the structure of self-assembled quantum dots constructed in the Ge/Si(001) system is calculated by using molecular dynamics simulation. Pyramidal hut cluster composed of Ge crystal with {105} facets surfaces observed in the early growth stage are computationally modeled. We calculate atomic stress and strain in relaxed pyramidal structure. Atomic stress for triplet of atoms is approximately defined as an average value of pairwise (virial) quantity inside triplet, which is the product of vectors between each two atoms. Atomic strain by means of atomic strain measure (ASM) which is formulated on the Green’s definition of continuum strain. We find the stress (strain) relaxation in pyramidal structure and stress (strain) concentration in the edge of pyramidal structure. We discuss size dependency of stress and strain distribution in pyramidal structure. The relationship between hydrostatic stress and atomic volumetric strain is basically linear for all models, but for the surface of pyramidal structure and Ge-Si interface. This means that there is a reasonable correlation between atomic stress proposed in the present study and atomic strain measure, ASM. read less NOT USED (high confidence) Z. Xu and M. Buehler, “Heat dissipation at a graphene–substrate interface,” Journal of Physics: Condensed Matter. 2012. link Times cited: 66 Abstract: The development of nanoelectronics faces severe challenges f… read moreAbstract: The development of nanoelectronics faces severe challenges from Joule heating, leading to high power density and spatial localization of heat, which nucleates thermal hot spots, limits the maximum current density and potentially causes catastrophic materials failure. Weak interfacial coupling with the substrate is a major route for effective heat mitigation in low-dimensional materials such as graphene and carbon nanotubes. Here we investigate the molecular-scale physics of this process by performing molecular dynamics simulations, and find that significant heating in graphene supported by a silicon carbide substrate cannot be avoided when the areal power density exceeds PG = 0.5 GW m−2. A steady state will be established within 200 ps with a significant temperature difference built up across the interface, and the interfacial thermal conductivity κc increases at higher power densities from 10 to 50 MW m−2 K−1. These observations are explained by a two-resistor model, where strong phonon scattering at the interface may perturb the ballistic heat transport and lead to a diffusive mechanism. Nanoengineering the interfacial thermal coupling by intercalating guest atoms shows potential for designing thermally transparent but electronically insulating interfaces, which paves the way for simultaneously optimizing thermal management and charge carrier mobility in nanoelectronics. read less NOT USED (high confidence) W. Pan et al., “Biaxial Compressive Strain Engineering in Graphene/Boron Nitride Heterostructures,” Scientific Reports. 2012. link Times cited: 117 NOT USED (high confidence) Y. He, I. Savić, D. Donadio, and G. Galli, “Lattice thermal conductivity of semiconducting bulk materials: atomistic simulations.,” Physical chemistry chemical physics : PCCP. 2012. link Times cited: 105 Abstract: This paper presents a theoretical investigation of the micro… read moreAbstract: This paper presents a theoretical investigation of the microscopic mechanisms responsible for heat transport in bulk Si, Ge and SiGe alloys, with the goal of providing insight into design rules for efficient Si-based nanostructured thermoelectric semiconductors. We carried out a detailed atomistic study of the thermal conductivity, using molecular dynamics and the Boltzmann transport equation. We investigated in detail the effects of the physical approximations underlying each approach, as well as the effect of the numerical approximations involved in the implementation of the two different methods. Our findings permitted us to understand and reconcile apparently conflicting results reported in the literature. read less NOT USED (high confidence) J. Zhang, C. Liu, Y. Shu, and J. Fan, “Growth and properties of Cu thin film deposited on Si(0 0 1) substrate: A molecular dynamics simulation study,” Applied Surface Science. 2012. link Times cited: 50 NOT USED (high confidence) I. Solov’yov, A. Yakubovich, P. Nikolaev, I. Volkovets, and A. Solov’yov, “MesoBioNano explorer—A universal program for multiscale computer simulations of complex molecular structure and dynamics,” Journal of Computational Chemistry. 2012. link Times cited: 112 Abstract: We present a multipurpose computer code MesoBioNano Explorer… read moreAbstract: We present a multipurpose computer code MesoBioNano Explorer (MBN Explorer). The package allows to model molecular systems of varied level of complexity. In particular, MBN Explorer is suited to compute system's energy, to optimize molecular structure as well as to consider the molecular and random walk dynamics. MBN Explorer allows to use a broad variety of interatomic potentials, to model different molecular systems, such as atomic clusters, fullerenes, nanotubes, polypeptides, proteins, DNA, composite systems, nanofractals, and so on. A distinct feature of the program, which makes it significantly different from the existing codes, is its universality and applicability to the description of a broad range of problems involving different molecular systems. Most of the existing codes are developed for particular classes of molecular systems and do not permit multiscale approach while MBN Explorer goes beyond these drawbacks. On demand, MBN Explorer allows to group particles in the system into rigid fragments, thereby significantly reducing the number of dynamical degrees of freedom. Despite the universality, the computational efficiency of MBN Explorer is comparable (and in some cases even higher) than the computational efficiency of other software packages, making MBN Explorer a possible alternative to the available codes. © 2012 Wiley Periodicals, Inc. read less NOT USED (high confidence) J. Park and V. Prakash, “Thermal transport in 3D pillared SWCNT–graphene nanostructures,” Journal of Materials Research. 2012. link Times cited: 33 Abstract: We present results of a molecular dynamics study using adapt… read moreAbstract: We present results of a molecular dynamics study using adaptive intermolecular reactive empirical bond order interatomic potential to analyze thermal transport in three-dimensional pillared single-walled carbon nanotube (SWCNT)–graphene superstructures comprised of unit cells with graphene floors and SWCNT pillars. The results indicate that in-plane as well as out-of-plane thermal conductivity in these superstructures can be tuned by varying the interpillar distance and/or the pillar height. The simulations also provide information on thermal interfacial resistance at the graphene–SWCNT junctions in both the in-plane and out-of-plane directions. Among the superstructures analyzed, the highest effective (based on the unit cell cross-sectional area) in-plane thermal conductivity was 40 W/(m K) with an out-of-plane thermal conductivity of 1.0 W/(m K) for unit cells with an interpillar distance D _x = 3.3 nm and pillar height D _z = 1.2 nm, while the highest out-of-plane thermal conductivity was 6.8 W/(m K) with an in-plane thermal conductivity of 6.4 W/(m K) with D _x = 2.1 nm and D _z= 4.2 nm. read less NOT USED (high confidence) C. Henager, F. Gao, S. Hu, G. Lin, E. Bylaska, and N. Zabaras, “Simulating Interface Growth and Defect Generation in CZT – Simulation State of the Art and Known Gaps.” 2012. link Times cited: 1 Abstract: This one-year, study topic project will survey and investiga… read moreAbstract: This one-year, study topic project will survey and investigate the known state-of-the-art of modeling and simulation methods suitable for performing fine-scale, fully 3-D modeling, of the growth of CZT crystals at the melt-solid interface, and correlating physical growth and post-growth conditions with generation and incorporation of defects into the solid CZT crystal. In the course of this study, this project will also identify the critical gaps in our knowledge of modeling and simulation techniques in terms of what would be needed to be developed in order to perform accurate physical simulations of defect generation in melt-grown CZT. The transformational nature of this study will be, for the first time, an investigation of modeling and simulation methods for describing microstructural evolution during crystal growth and the identification of the critical gaps in our knowledge of such methods, which is recognized as having tremendous scientific impacts for future model developments in a wide variety of materials science areas. read less NOT USED (high confidence) L. Zhang, H. Zhao, Z. Ma, H. Huang, C. Shi, and Z. Wen-shuang, “A study on phase transformation of monocrystalline silicon due to ultra-precision polishing by molecular dynamics simulation,” AIP Advances. 2012. link Times cited: 50 Abstract: A three-dimensional molecular dynamics (MD) simulation is co… read moreAbstract: A three-dimensional molecular dynamics (MD) simulation is conducted to investigate the material removal mechanism of monocrystalline silicon by mechanical polishing at atomistic scale with diamond abrasives. By monitoring relative positions of atoms in the monocrystalline silicon specimen, the microstructure transformation of monocrystalline silicon is clearly identified and analyzed. The phase transformation is accomplished under extreme conditions with high temperature and huge hydrostatic pressure, and as a result the silicon microstructure transforms from the four-coordinated diamond cubic structure (Si-I) to the six-coordinated body-centered tetragonal structure (β-silicon). The values of local pressure and temperature are consistent with previous experimental results. In addition, the force between the diamond abrasive and specimen indicates the occurrence of phase transformation in the specimen. The potential energy of each atom is also calculated, which provides us an effective approach to analyze the energy variation of atoms in the mechanism of material deformation and the formation of machined surface after ultra-precision polishing. read less NOT USED (high confidence) V. Bocchetti and H. Diep, “Melting of rare-gas crystals: Monte Carlo simulation versus experiments.,” The Journal of chemical physics. 2012. link Times cited: 7 Abstract: We study the melting transition in crystals of rare gas Ar, … read moreAbstract: We study the melting transition in crystals of rare gas Ar, Xe, and Kr by the use of extensive Monte Carlo simulations with the Lennard-Jones potential. The parameters of this potential have been deduced by Bernardes in 1958 from experiments of rare gas in the gaseous phase. It is amazing that the parameters of such a popular potential were not fully tested so far. Using the Bernardes parameters, we find that the melting temperature of several rare gas is from 13% to 20% higher than that obtained from experiments. We have throughout studied the case of Ar by examining both finite-size and cutoff-distance effects. In order to get a good agreement with the experimental melting temperature, we propose a modification of these parameters to describe better the melting of rare-gas crystals. read less NOT USED (high confidence) J. Chen, G. Zhang, and B. Li, “Thermal Contact Resistance Across Nanoscale Silicon Dioxide and Silicon Interface,” arXiv: Materials Science. 2012. link Times cited: 123 Abstract: Silicon dioxide and silicon (SiO$_{2}$/Si) interface plays a… read moreAbstract: Silicon dioxide and silicon (SiO$_{2}$/Si) interface plays a very important role in semiconductor industry. However, at nanoscale, its interfacial thermal properties haven't been well understood so far. In this paper, we systematically study the interfacial thermal resistance (Kapitza resistance) of a heterojunction composed of amorphous silicon dioxide and crystalline silicon by using molecular dynamics simulations. Numerical results have shown that Kapitza resistance at SiO$_{2}$/Si interface depends on the interfacial coupling strength remarkably. In the weak interfacial coupling limit, Kapitza resistance depends on both the detailed interfacial structure and the length of the heterojunction, showing large fluctuation among different samples. In contrast, it is almost insensitive to the detailed interfacial structure or the length of the heterojunction in the strong interfacial coupling limit, giving rise to a nearly constant value around 0.9 $\times10^{-9}$ m$^{2}$KW$^{-1}$ at room temperature. Moreover, the temperature dependent Kapitza resistance in the strong interfacial coupling limit has also been examined. Our study provides useful guidance to the thermal management and heat dissipation across nanoscale SiO$_{2}$/Si interface, in particular for the design of silicon nanowire based nano electronics and photonics devices. read less NOT USED (high confidence) K. Johnston, C. Herbers, and N. V. D. Vegt, “Development of Classical Molecule-Surface Interaction Potentials Based on Density Functional Theory Calculations: Investigation of Force Field Representability,” Journal of Physical Chemistry C. 2012. link Times cited: 12 Abstract: A simple classical force field, based only on Coulomb and Le… read moreAbstract: A simple classical force field, based only on Coulomb and Lennard-Jones potentials, was developed to describe the interaction of an ethanol molecule physisorbed on the α-alumina (0001) surface. A range of adsorption structures were calculated using density functional theory (DFT) and these results were used for the force field parametrization. This system has a very inhomogeneous adsorption energy landscape, and the importance of the choice of data set used for fitting the force field was investigated. It was found that a Lennard-Jones and Coulombic potential can describe the ethanol–alumina interaction in reasonable qualitative agreement with the DFT reference data, provided that the data set was representative of both short- and long-range interactions and high- and low-energy configurations. Using a few distance-dependent adsorption energy curves at different surface sites gives the best compromise between computing time and accuracy of a Lennard-Jones based force field. This approach demonstrates a sy... read less NOT USED (high confidence) Y. Gao, Y. Jing, Q. Meng, L. Zhang, J. Liu, and X. Qin, “Investigation of the thermal‐transport properties for silicon nanofilm covered with graphene via nonequilibrium molecular dynamics,” physica status solidi (b). 2012. link Times cited: 7 Abstract: Nonequilibrium molecular dynamics (NEMD) is used to investig… read moreAbstract: Nonequilibrium molecular dynamics (NEMD) is used to investigate the thermal‐transport properties of a silicon nanofilm covered with graphene (Gr/Si/Gr nanofilm). The investigation results demonstrate that graphene can enhance the thermal‐transport properties and weaken the ballistic characteristics of silicon nanofilm. Under the action of a small strain, the thermal conductivity decreases with the growth of tensile and compressive strain, respectively. In addition, the higher‐frequency phonons in graphene give more contributions to the variation of thermal conductivity of Gr/Si/Gr nanofilm under strain. The thermal conductivity of Gr/Si/Gr nanofilm increases linearly with the increase of temperature in the lower‐temperature regime due to the quantum effect, and begins to clearly decrease when the temperature exceeds a definite value. read less NOT USED (high confidence) H.-jun Shen and K. Cheng, “Tensile properties and thermal conductivity of graphene nanoribbons encapsulated in single-walled carbon nanotube,” Molecular Simulation. 2012. link Times cited: 10 Abstract: By using molecular dynamics (MD) method, the axial tension o… read moreAbstract: By using molecular dynamics (MD) method, the axial tension of straight- 30°-helical- and 60°-helical-graphene nanoribbons encapsulated in single-walled carbon nanotubes (GNR@SWNTs) is simulated, and the thermal conductivity is calculated. According to the obtained results, the tensile properties and the thermal conductivity of the three GNR@SWNTs are discussed by comparing with those of (10, 10) SWNT. It is shown that (1) the straight-GNR@SWNT has much better loading-support capability than the (10, 10) SWNT, and the 60°-helical-GNR@SWNT has the comparable one to the (10, 10) SWNT and (2) the thermal conductivity of the straight-GNR@SWNT is about 2.2 times that of the (10, 10) SWNT, the 30°-helical-GNR@SWNT is about 1.5 times and the 60°-helical-GNR@SWNT is only about 1.23 times. read less NOT USED (high confidence) Y. Long, Y. G. Liu, F. Nie, and J. Chen, “Force-field derivation and atomistic simulation of HMX–TATB–graphite mixture explosives,” Modelling and Simulation in Materials Science and Engineering. 2012. link Times cited: 14 Abstract: We have studied the interfaces between octahydro-1,3,5,7-tet… read moreAbstract: We have studied the interfaces between octahydro-1,3,5,7-tetranitro-1,3,5,7-tetrazocine (HMX), 1,3,5-triamino-2,4,6-trinitrobenzene (TATB) and graphite, where the former is a sensitive explosive, the middle one is an insensitive explosive and the latter is a desensitizer. The force-field across the interfaces is obtained by ab initio calculation and least-squares optimization. We use this force-field to simulate the breaking and deformation processes of the HMX–TATB–graphite interface and polycrystal systems. The breaking, coating and plasticizing properties are discussed. A set of mechanical parameters for the mixture explosives is obtained. read less NOT USED (high confidence) M. Sadeghi, M. Pettes, and L. Shi, “Thermal transport in graphene,” Solid State Communications. 2012. link Times cited: 152 NOT USED (high confidence) V. Dozhdikov, A. Basharin, and P. Levashov, “Two-phase simulation of the crystalline silicon melting line at pressures from -1 to 3 GPa.,” The Journal of chemical physics. 2012. link Times cited: 32 Abstract: Results of a numerical investigation of crystalline silicon … read moreAbstract: Results of a numerical investigation of crystalline silicon melting line within the range of pressures from -1 to 3 GPa are presented. A two-phase molecular dynamics method is applied to obtain temperature, pressure, and densities of solid and liquid phases on the melting line. Using a special procedure we ensure the strict control of the two-phase equilibrium in the simulation cell. To describe the interaction between the atoms four classic potentials have been chosen: the Stillinger-Weber one and three modified variants of the Tersoff potential. For the Stillinger-Weber and Tersoff potentials in the modification by Kumagai-Izumi-Hara-Sakai a good coincidence with experimental data on crystalline Si melting temperature is obtained within the range of pressure from 0 to 3 GPa. Calculations of the solid and liquid phase densities on the silicon melting line for the Stillinger-Weber potential are also in close agreement with experiments. read less NOT USED (high confidence) V. Varshney, A. Roy, D. Dudis, J. Lee, and B. Farmer, “A novel nano-configuration for thermoelectrics: helicity induced thermal conductivity reduction in nanowires.,” Nanoscale. 2012. link Times cited: 19 Abstract: In this article, we propose a novel helical nano-configurati… read moreAbstract: In this article, we propose a novel helical nano-configuration towards the designing of high ZT thermoelectric materials. Non-equilibrium molecular dynamics (NEMD) simulations for 'model' bi-component nanowires indicate that a significant reduction in thermal conductivity, similar to that of flat superlattice nanostructures, can be achieved using a helical geometric configuration. The reduction is attributed to a plethora of transmissive and reflective phonon scattering events resulting from the steady alteration of phonon propagating direction that emerges from the continuous rotation of the helical interface. We also show that increasing the relative mass ratio of the two components lowers the phonon energy transmission at the interface due to differences in vibrational frequency spectra, thereby relatively 'easing' the phonon energy propagation along the helical pathway. While the proposed mechanisms result in a reduced lattice thermal conductivity, the continuous nature of the bi-component nanowire would not be expected to significantly reduce its electrical counterpart, as often occurs in superlattice/alloy nanostructures. Hence, we postulate that the helical configuration of atomic arrangement provides an attractive and general framework for improved thermoelectric material assemblies independent of the specific chemical composition. read less NOT USED (high confidence) Y. Long, Y. G. Liu, F. Nie, and J. Chen, “Theoretical study of impacting and desensitizing for HMX–graphite mixture explosive,” Shock Waves. 2012. link Times cited: 8 NOT USED (high confidence) Y. Long, Y. G. Liu, F. Nie, and J. Chen, “Theoretical study of impacting and desensitizing for HMX–graphite mixture explosive,” Shock Waves. 2012. link Times cited: 2 NOT USED (high confidence) A. Ito, A. Takayama, S. Saito, and H. Nakamura, “Formation and Classification of Amorphous Carbon by Molecular Dynamics Simulation,” Japanese Journal of Applied Physics. 2012. link Times cited: 6 Abstract: By using molecular dynamics simulation, the formation mechan… read moreAbstract: By using molecular dynamics simulation, the formation mechanisms of amorphous carbon in a particular sp3-rich structure were researched. The problem that reactive empirical bond order potential cannot represent amorphous carbon properly was resolved in the transition process from graphite to diamond by a high pressure and the deposition of amorphous carbon thin films. Moreover, a new potential model, which is based on the electron distribution simplified as a point charge, was developed by using the downfolding method. As a result, the molecular dynamics simulation with the new potential could demonstrate the transition from graphite to diamond at the pressure of 15 GPa, which agrees with an experimental report and the deposition of sp3-rich amorphous carbon. read less NOT USED (high confidence) S. Zhao, J. Xue, Y. Wang, and S. Yan, “Effect of SiO2 substrate on the irradiation-assisted manipulation of supported graphene: a molecular dynamics study,” Nanotechnology. 2012. link Times cited: 49 Abstract: The irradiation effects in graphene supported by SiO2 substr… read moreAbstract: The irradiation effects in graphene supported by SiO2 substrate including defect production and implantation efficiency are investigated using the molecular dynamics (MD) method with empirical potentials. We show that the irradiation damage in supported graphene comes from two aspects: the direct damage induced by the incident ions and the indirect damage resulting from backscattered particles and sputtered atoms from the substrate. In contrast with the damage in suspended graphene, we find that the indirect damage is dominant in supported graphene at high energies. As a result, enhanced irradiation damage in supported graphene is observed when the incident energy is above 5 keV for Ar and 3 keV for Si. The direct damage probability at all energies, even the total damage probability at low energies, in supported graphene is always much lower than that in suspended graphene because of the higher threshold displacement energy of carbon atoms. In addition, we demonstrate the striking finding that it is possible to dope graphene with sputtered atoms from the substrate and the implantation probability is considerable at optimal energies. Our results indicate that the substrate is an important factor in the process of ion-irradiation-assisted engineering of the properties of graphene. read less NOT USED (high confidence) Y. Hwang, E.-K. Lee, H. Choi, K.-H. Yun, M. Lee, and Y.-C. Chung, “Atomic behavior of carbon atoms on a Si removed 3C-SiC (111) surface during the early stage of epitaxial graphene growth,” Journal of Applied Physics. 2012. link Times cited: 6 Abstract: The understanding of the formation of graphene at the atomic… read moreAbstract: The understanding of the formation of graphene at the atomic scale on Si-terminated 3C-SiC for obtaining high-quality graphene sheets remains elusive, although epitaxial graphene growth has been shown to be a well-known method for economical mass production of graphene/SiC heterojunctions. In this paper, the atomic behavior of carbon atoms on a Si removed 3C-SiC (111) surface for the formation of graphene buffer layer during the early stage of epitaxial graphene growth was investigated using a molecular dynamics simulation. Observation of the behavior of the remaining carbon atoms on the Si-terminated 3C-SiC (111) surface after removal of the silicon atoms revealed that graphene clusters, which were formed by sp2-bonded carbon atoms, start to appear at annealing temperatures higher than 1300 K. Our simulations indicated that the structural stability of the whole system increased as the number of sp2-bonded carbon atoms on the Si-terminated 3C-SiC (111) surface increased. It was also found that the diffusi... read less NOT USED (high confidence) Y. Tian, R. Wei, V. Eichhorn, S. Fatikow, B. Shirinzadeh, and D. Zhang, “Mechanical properties of boron nitride nanocones,” Journal of Applied Physics. 2012. link Times cited: 15 Abstract: Using classic molecular dynamics simulation, the mechanical … read moreAbstract: Using classic molecular dynamics simulation, the mechanical properties of boron nitride nanocones (BNNCs) have been systematically investigated. The influences of the apex angle, cone height on tensile, and compressive behavior of BNNCs under axial strains are analyzed. The failure strains and strain energy per atom of BNNCs decrease with the increasing cone height, whereas the failure forces almost remain constant for BNNCs under axial tensile strains. For the buckling analyses of BNNCs, the critical strain and critical axial force reduce significantly with the increase of the apex angle. The increasing cone height can also significantly decrease the critical strain of BNNCs and only slightly affects the critical force of BNNCs. The cone height has little influence on the resulting buckling patterns; however, the apex angle has a significant effect on the buckling patterns of the BNNCs. From the computational analyses, it is noted that there exist three deformation patterns, i.e., fourfold rotational sym... read less NOT USED (high confidence) H. Hou, R. Wang, J. Wang, X. Liu, G. Chen, and P. Huang, “An analytic bond-order potential for the Fe–Cu system,” Modelling and Simulation in Materials Science and Engineering. 2012. link Times cited: 5 Abstract: An angular-dependent analytic bond-order potential (ABOP) fo… read moreAbstract: An angular-dependent analytic bond-order potential (ABOP) for copper and Fe–Cu system was developed, based on the ABOP of pure iron introduced by Müller et al (2007 J. Phys.: Condens. Matter 19 326220). The potential parameters for the present ABOP model of copper were determined by fitting to the experimental data of the basic properties of fcc Cu and ab initio calculated properties of bcc Cu. The model predicts the vacancy formation energy in good agreement with the experimental result, although no vacancy formation information was used in the fitting of the model parameters. The melting point of Cu is also properly reproduced. The Fe–Cu binary system was described by adding two independent cross parameters in the potential model. The cross parameters were fitted using the ab initio data of the formation energies and lattice parameters of fictitious Fe–Cu alloys. The potential was applied to investigate the point defects and small defect clusters in dilute Fe–Cu alloys. The results were compared with the ab initio data and the values obtained with other potentials. read less NOT USED (high confidence) S. Zhao, J. Xue, L. Liang, Y. Wang, and S. Yan, “Drilling Nanopores in Graphene with Clusters: A Molecular Dynamics Study,” Journal of Physical Chemistry C. 2012. link Times cited: 43 Abstract: Using molecular dynamics simulation with empirical potential… read moreAbstract: Using molecular dynamics simulation with empirical potentials, we show that energetic cluster ion beam is a powerful tool to drill nanopores in graphene, which have been proved to possess the potential applications in nanopore-based single-molecule detection and analysis such as DNA sequencing. Two types of clusters are considered, and different cluster size and incident energies are used to simulate the impact events. Our results demonstrate that by choosing suitable cluster species and controlling its energy, a nanopore with expected size and quality could be created in a graphene sheet. Furthermore, suspended carbon chains could be formed at the edge of the nanopore via adjusting the ion energy, which provided a feasible way to decorate the nanopore with chemical methods such as adsorption of large molecules or foreign atoms for biosensing applications. read less NOT USED (high confidence) S. Zhao, J. Xue, Y. Wang, and S. Yan, “Chemical bonding assisted damage production in single-walled carbon nanotubes induced by low-energy ions,” Applied Physics A. 2012. link Times cited: 8 NOT USED (high confidence) C. Jeong, S. Datta, and M. S. Lundstrom, “Thermal conductivity of bulk and thin-film silicon: A Landauer approach,” Journal of Applied Physics. 2012. link Times cited: 129 Abstract: The question of what fraction of the total heat flow is tran… read moreAbstract: The question of what fraction of the total heat flow is transported by phonons with different mean-free-paths is addressed using a Landauer approach with a full dispersion description of phonons to evaluate the thermal conductivities of bulk and thin film silicon. For bulk Si, the results reproduce those of a recent molecular dynamic treatment showing that about 50% of the heat conduction is carried by phonons with a mean-free-path greater than about 1 μm. For the in-plane thermal conductivity of thin Si films, we find that about 50% of the heat is carried by phonons with mean-free-paths shorter than in the bulk. When the film thickness is smaller than ∼0.2 μm, 50% of the heat is carried by phonons with mean-free-paths longer than the film thickness. The cross-plane thermal conductivity of thin-films, where quasi-ballistic phonon transport becomes important, is also examined. For ballistic transport, the results reduce to the well-known Casimir limit [H. B. G. Casimir, Physica 5, 495–500 (1938)]. These re... read less NOT USED (high confidence) L. Pastewka, M. Mrovec, M. Moseler, and P. Gumbsch, “Bond order potentials for fracture, wear, and plasticity,” MRS Bulletin. 2012. link Times cited: 55 Abstract: Coulson’s bond order is a chemically intuitive quantity that… read moreAbstract: Coulson’s bond order is a chemically intuitive quantity that measures the difference in the occupation of bonding and anti-bonding orbitals. Both empirical and rigorously derived bond order expressions have evolved in the course of time and proven very useful for atomistic modeling of materials. The latest generation of empirical formulations has recently been augmented by screening-function approaches. Using friction and wear of diamond and diamond-like carbon as examples, we demonstrate that such a screened bond order scheme allows for a faithful description of dynamical bond-breaking processes in materials far from equilibrium. The rigorous bond order expansions are obtained by systematic coarse-graining of the tight binding approximation and form a bridge between the electronic structure and the atomistic modeling hierarchies. They have enabled bottom-up derivations of bond order potentials for covalently bonded semiconductors, transition metals, and multicomponent intermetallics. The recently developed magnetic bond order potential gives a correct description of both directional covalent bonds and magnetic interactions in iron and is able to correctly predict the stability of bulk Fe polymorphs as well as the intricate properties of dislocation cores. The bond order schemes hence represent a family of reliable and powerful models that can be applied in large-scale simulations of complex processes involving fracture, wear, and plasticity. read less NOT USED (high confidence) J. C. Slattery, K. Fu, and E. Oh, “The mechanics and thermodynamics of edge fracture: the critical energy release rate, the compatibility constraint, and the bond potential,” Philosophical Magazine. 2012. link Times cited: 3 Abstract: Following Gurtin and many others, the critical energy releas… read moreAbstract: Following Gurtin and many others, the critical energy release rate is commonly identified as an ill-defined surface energy. The primary objectives of this paper are to clarify the definition of this surface energy and the role of the entropy inequality in the discussion of critical conditions. In view of an increasing emphasis on ab initio computations, a secondary objective is to show how the critical energy release rate and the compatibility constraint 1 can be used to solve a problem for which we have experimental data, using only ab initio estimates of surface tension and bond potential, both of which are increasingly available. read less NOT USED (high confidence) S. Goel, X. Luo, R. Reuben, and H. Pen, “Influence of temperature and crystal orientation on tool wear during single point diamond turning of silicon,” Wear. 2012. link Times cited: 96 NOT USED (high confidence) X. Li and R. Yang, “Size-dependent phonon transmission across dissimilar material interfaces,” Journal of Physics: Condensed Matter. 2012. link Times cited: 30 Abstract: In this paper, we study the size effects on the phonon trans… read moreAbstract: In this paper, we study the size effects on the phonon transmission across material interfaces using the atomistic Green’s function method. Layered Si and Ge or Ge-like structures are modeled with a variety of confined sizes in both transverse and longitudinal directions. The dynamical equation of the lattice vibration (phonon waves) is solved using the Green’s function method and the phonon transmission is calculated through the obtained Green’s function. Phonon transmission across a single interface of semi-infinite Si and Ge materials is studied first for the validation of the methodology. We show that phonon transmission across an interface can be tuned by changing the mass ratio of the two materials. Multi-layered superlattice-like structures with longitudinal size confinement are then studied. Frequency-dependent phonon transmission as a function of both the number of periods and the period thickness is reported. A converged phonon transmission after ten periods is observed due to the formation of phonon minibands. Frequency-dependent phonon transmission with transverse size confinement is also studied for the interface of Si and Ge nanowire-like structures. The phonon confinement induces new dips and peaks of phonon transmission when compared with the results for a bulk interface. With increasing size in the transverse direction, the phonon transmission approaches that of a bulk Si/Ge interface. read less NOT USED (high confidence) T. E. Letsoalo and J. Lowther, “Elastic and thermodynamic properties of potentially superhard carbon boride materials,” Journal of Superhard Materials. 2012. link Times cited: 6 NOT USED (high confidence) K. Farah, F. Müller-Plathe, and M. Böhm, “Classical reactive molecular dynamics implementations: state of the art.,” Chemphyschem : a European journal of chemical physics and physical chemistry. 2012. link Times cited: 71 Abstract: Reactive molecular dynamics (RMD) implementations equipped w… read moreAbstract: Reactive molecular dynamics (RMD) implementations equipped with force field approaches to simulate both the time evolution as well as chemical reactions of a broad class of materials are reviewed herein. We subdivide the RMD approaches developed during the last decade as well as older ones already reviewed in 1995 by Srivastava and Garrison and in 2000 by Brenner into two classes. The methods in the first RMD class rely on the use of a reaction cutoff distance and employ a sudden transition from the educts to the products. Due to their simplicity these methods are well suited to generate equilibrated atomistic or material-specific coarse-grained polymer structures. In connection with generic models they offer useful qualitative insight into polymerization reactions. The methods in the second RMD class are based on empirical reactive force fields and implement a smooth and continuous transition from the educts to the products. In this RMD class, the reactive potentials are based on many-body or bond-order force fields as well as on empirical standard force fields, such as CHARMM, AMBER or MM3 that are modified to become reactive. The aim with the more sophisticated implementations of the second RMD class is the investigation of the reaction kinetics and mechanisms as well as the evaluation of transition state geometries. Pure or hybrid ab initio, density functional, semi-empirical, molecular mechanics, and Monte Carlo methods for which no time evolution of the chemical systems is achieved are excluded from the present review. So are molecular dynamics techniques coupled with quantum chemical methods for the treatment of the reactive regions, such as Car-Parinello molecular dynamics. read less NOT USED (high confidence) P. Zhu and F. Fang, “Molecular dynamics simulations of nanoindentation of monocrystalline germanium,” Applied Physics A. 2012. link Times cited: 57 NOT USED (high confidence) S. Kast, S. Schäfer, and R. Schäfer, “Thermally induced polarizabilities and dipole moments of small tin clusters.,” The Journal of chemical physics. 2012. link Times cited: 9 Abstract: We study the influence of thermal excitation on the electric… read moreAbstract: We study the influence of thermal excitation on the electric susceptibilities for Sn(6) and Sn(7) clusters by molecular beam electric deflection and Monte-Carlo simulations in conjunction with quantum-chemical calculations. At low temperatures (40 K), no field-induced broadening of the Sn(6) and Sn(7) cluster beams are observed, in agreement with vanishing permanent electric dipole moments due to their centro-symmetrical ground states. The electric polarizabilities of Sn(6) and Sn(7), as inferred from the field-induced molecular beam deflection, are in good agreement with the quantum-chemical predictions. At elevated temperatures of 50-100 K, increased polarizabilities of about 2-3 Å(3) are obtained. Also, we found indications of a field-induced beam broadening which points to the existence of permanent dipole moments of about 0.01-0.02 D per atom at higher temperatures. These results cannot be explained by thermal excitations within a harmonic oscillator model, which would yield a temperature-independent polarizability and fluxional, but not permanent, dipole moments. We analyze this behavior by Monte-Carlo simulations in order to compute average temperature-induced electric dipole moments. For that purpose, we developed a novel technique for predicting observables sampled on the quantum-chemical potential energy surface by an umbrella sampling correction of Monte-Carlo results obtained from simulations utilizing an empirical potential. The calculated, fluxional dipole moments are in tune with the observed beam broadenings. The cluster dynamics underlying the polarizability appear to be intermediate between rigid and floppy molecules which leads to the conclusion that the rotational, not the vibrational temperature seems to be the key parameter that determines the temperature dependence of the polarizability. read less NOT USED (high confidence) F. Castanié, L. Nony, S. Gauthier, and X. Bouju, “Graphite, graphene on SiC, and graphene nanoribbons: Calculated images with a numerical FM-AFM,” Beilstein Journal of Nanotechnology. 2012. link Times cited: 13 Abstract: Background: Characterization at the atomic scale is becoming… read moreAbstract: Background: Characterization at the atomic scale is becoming an achievable task for FM-AFM users equipped, for example, with a qPlus sensor. Nevertheless, calculations are necessary to fully interpret experimental images in some specific cases. In this context, we developed a numerical AFM (n-AFM) able to be used in different modes and under different usage conditions. Results: Here, we tackled FM-AFM image calculations of three types of graphitic structures, namely a graphite surface, a graphene sheet on a silicon carbide substrate with a Si-terminated surface, and finally, a graphene nanoribbon. We compared static structures, meaning that all the tip and sample atoms are kept frozen in their equilibrium position, with dynamic systems, obtained with a molecular dynamics module allowing all the atoms to move freely during the probe oscillations. Conclusion: We found a very good agreement with experimental graphite and graphene images. The imaging process for the deposited nanoribbon demonstrates the stability of our n-AFM to image a non-perfectly planar substrate exhibiting a geometrical step as well as a material step. read less NOT USED (high confidence) N. Liao, W. Xue, and M. Zhang, “Molecular dynamics investigation of Si–B–N ceramics: effects of boron content,” Modelling and Simulation in Materials Science and Engineering. 2012. link Times cited: 7 Abstract: Silicon boron nitride (SiBN) has the advantages of Si3N4 at … read moreAbstract: Silicon boron nitride (SiBN) has the advantages of Si3N4 at high temperatures and also advantageous anti-oxidation and mechanical properties. While the synthesis methods of this new material are limited to the sol–gel route, understanding the structural and mechanical properties of SiBN becomes essential in order to control the properties under fabrication. In this study, atomistic models of SiBN ceramics with different boron content were built by melt-quench technologies. Pair distribution function and angular distribution function were applied to study the structural properties, and tensile loading was applied in order to obtain the stress–strain curves and mechanical properties of SiBN. Phase separation of SiN-rich region and BN-rich region was observed for SiBN with different B content. With B content increasing, the BN-rich region tended to be larger and the SiN-rich region became smaller. Si3B3N7 showed sharper and narrower peaks on distribution functions and larger Young's modulus than Si3BN5 and Si3B5N9. read less NOT USED (high confidence) Z. Zhang, X. Wang, and J. Li, “Simulation of collisions between buckyballs and graphene sheets,” International Journal of Smart and Nano Materials. 2012. link Times cited: 11 Abstract: The phenomena of buckyball–graphene collisions were investig… read moreAbstract: The phenomena of buckyball–graphene collisions were investigated by classical molecular dynamics (MD) simulation using the empirical Tersoff potential. Three cases were investigated: collisions between a buckyball and a single-layer graphene; collisions between a nano-onion (a double-layer concentric spherical nanostructure: a C60 in a C320) and a single-layer graphene; collisions between a nano-onion and a double-layer graphene. The impact velocity of the buckyball or nano-onion ranged from 4.37 km/s to 15.31 km/s. Simulation results for the buckyball–graphene collisions show that the buckyball bounces back when the impact velocity is less than 8.75 km/s, sticks to the graphene when the impact velocity is between 8.75 km/s and 12.03 km/s, and breaks when the impact velocity is greater than 12.03 km/s. Similar phenomena are observed for the other two cases. A single buckyball can never go through a single-layer graphene intact; however, the inner structure (C60) of a nano-onion can penetrate through a single-layer graphene without any damage. The energy evolution during the whole simulation process was also studied. read less NOT USED (high confidence) D. Ward, X. W. Zhou, B. M. Wong, J. Zimmerman, and F. Doty, “Analytical bond-order potential for the cadmium telluride binary system.” 2012. link Times cited: 69 Abstract: CdTe and Cd${}_{1\ensuremath{-}x}$Zn${}_{x}$Te are the leadi… read moreAbstract: CdTe and Cd${}_{1\ensuremath{-}x}$Zn${}_{x}$Te are the leading semiconductor compounds for both photovoltaic and radiation detection applications. The performance of these materials is sensitive to the presence of atomic-scale defects in the structures. To enable accurate studies of these defects using modern atomistic simulation technologies, we have developed a high-fidelity analytical bond-order potential for the CdTe system. This potential incorporates primary ($\ensuremath{\sigma}$) and secondary ($\ensuremath{\pi}$) bonding and the valence dependence of the heteroatom interactions. The functional forms of the potential are directly derived from quantum-mechanical tight-binding theory under the condition that the first two and first four levels of the expanded Green's function for the $\ensuremath{\sigma}$- and $\ensuremath{\pi}$-bond orders, respectively, are retained. The potential parameters are optimized using iteration cycles that include first-fitting properties of a variety of elemental and compound configurations (with coordination varying from 1 to 12) including small clusters, bulk lattices, defects, and surfaces, and then checking crystalline growth through vapor deposition simulations. It is demonstrated that this CdTe bond-order potential gives structural and property trends close to those seen in experiments and quantum-mechanical calculations and provides a good description of melting temperature, defect characteristics, and surface reconstructions of the CdTe compound. Most importantly, this potential captures the crystalline growth of the ground-state structures for Cd, Te, and CdTe phases in vapor deposition simulations. read less NOT USED (high confidence) J. Guo et al., “Simulation on initial growth stages of graphene on Pt (111) surface,” Journal of Applied Physics. 2012. link Times cited: 8 Abstract: Epitaxial growth process and morphology evolution in the ini… read moreAbstract: Epitaxial growth process and morphology evolution in the initial growth stages of graphene on Pt (111) surface have been studied by means of canonical Monte Carlo simulation. It is found that the nucleation, carbon chains, carbon rings, and then graphene domain are formed orderly in the early growth stages during the annealing process. The dynamic processes of the morphology evolution are visualized through the simulation. The formed structures of graphene are investigated quantitatively by pair distribution function, atomic intervals, and the bend angles among the three contiguous carbon atoms. The lattice mismatch between graphene and the Pt (111) surface is accommodated by the main structure of hcp-fcc. These simulation results are consistent with experimental observations and may give further insights to the epitaxial growth of graphene in the atomic scale. read less NOT USED (high confidence) X. Han and Y. Gan, “Investigation the complex dynamic evolvement mechanism of particle cluster and surface integrity in the chemical mechanical planarization,” The International Journal of Advanced Manufacturing Technology. 2012. link Times cited: 0 NOT USED (high confidence) M. Jafary-Zadeh, C. Reddy, V. Sorkin, and Y.-W. Zhang, “Kinetic nanofriction: a mechanism transition from quasi-continuous to ballistic-like Brownian regime,” Nanoscale Research Letters. 2012. link Times cited: 29 NOT USED (high confidence) E. Bellido and J. Seminario, “Molecular Dynamics Simulations of Ion-Bombarded Graphene,” Journal of Physical Chemistry C. 2012. link Times cited: 50 Abstract: Using molecular dynamics simulations and a hybrid Tersoff-ZB… read moreAbstract: Using molecular dynamics simulations and a hybrid Tersoff-ZBL potential, the effects of irradiating graphene with a carbon ion at several positions and several energies from 0.1 eV to 100 keV are studied. The simulations show four types of processes: absorption, reflection, transmission, and vacancy formation. At energies below 10 eV, the dominant process is reflection; between 10 and 100 eV, it is absorption; and between 100 eV and 100 keV, the dominant process is transmission. Vacancy formation is a low-probability process that takes place at energies above 30 eV. Three types of defects are found: adatom, single vacancy, and 5–8–5 defect formed from a double-vacancy defect. The simulations provide a fundamental understanding of the graphene carbon bombardment and the parameters to develop graphene devices by controlling defect formation. read less NOT USED (high confidence) J. Kioseoglou, A. Lotsari, E. Kalesaki, and G. Dimitrakopulos, “Interfaces between nonpolar and semipolar III-nitride semiconductor orientations: Structure and defects,” Journal of Applied Physics. 2012. link Times cited: 4 Abstract: Observations of easy transition between nonpolar and semipol… read moreAbstract: Observations of easy transition between nonpolar and semipolar orientations during III-Nitride heteroepitaxy identify the 90o 〈1¯21¯0〉 rotation relationship as being very important in defining this coexistence. A rigorous analysis of this relationship using the topological theory of interfaces showed that it leads to a high order of coincident symmetry and makes energetically favorable the appearance of the intergranular boundaries. Principal low-energy boundaries, that could also be technologically exploited, have been identified by high-resolution transmission electron microscopy (HRTEM) observations and have been studied energetically using empirical potential calculations. It is also shown that these boundaries can change their average orientation by incorporating disconnections. The pertinent strain relaxation mechanisms can cause such boundaries to act as sources of threading dislocations and stacking faults. The energetically favorable (101¯0) || (0001) boundary was frequently observed to delimit m... read less NOT USED (high confidence) L. Marqués, L. Pelaz, I. Santos, P. López, and R. Duffy, “Molecular dynamics simulation of the regrowth of nanometric multigate Si devices,” Journal of Applied Physics. 2012. link Times cited: 12 Abstract: We use molecular dynamics (MD) simulation techniques to stud… read moreAbstract: We use molecular dynamics (MD) simulation techniques to study the regrowth of nanometric multigate Si devices, such as fins and nanowires, surrounded by free surfaces and interfaces with amorphous material. Our results indicate that atoms in amorphous regions close to lateral free surfaces or interfaces rearrange at a slower rate compared to those in bulk due to the discontinuity of the lateral crystalline template. Consequently, the recrystallization front which advances faster in the device center than at the interfaces adopts new orientations. Regrowth then proceeds depending on the particular orientation of the new amorphous/crystal interfaces. In the particular case of 〈110〉 oriented fins, the new amorphous/crystal interfaces are aligned along the 〈111〉 direction, which produces frequent twining during further regrowth. Based on our simulation results, we propose alternatives to overcome this defected recrystallization in multigate structures: device orientation along 〈100〉 to prevent the formation o... read less NOT USED (high confidence) P. López, L. Pelaz, I. Santos, L. Marqués, and M. Aboy, “Molecular dynamics simulations of damage production by thermal spikes in Ge,” Journal of Applied Physics. 2012. link Times cited: 20 Abstract: Molecular dynamics simulation techniques are used to analyze… read moreAbstract: Molecular dynamics simulation techniques are used to analyze damage production in Ge by the thermal spike process and to compare the results to those obtained for Si. As simulation results are sensitive to the choice of the inter-atomic potential, several potentials are compared in terms of material properties relevant for damage generation, and the most suitable potentials for this kind of analysis are identified. A simplified simulation scheme is used to characterize, in a controlled way, the damage generation through the local melting of regions in which energy is deposited. Our results show the outstanding role of thermal spikes in Ge, since the lower melting temperature and thermal conductivity of Ge make this process much more efficient in terms of damage generation than in Si. The study is extended to the modeling of full implant cascades, in which both collision events and thermal spikes coexist. Our simulations reveal the existence of bigger damaged or amorphous regions in Ge than in Si, which ma... read less NOT USED (high confidence) F. Liu, Q. H. Tang, B. S. Shang, and T. C. Wang, “Simple optimized Brenner potential for thermodynamic properties of diamond,” Philosophical Magazine. 2012. link Times cited: 3 Abstract: We have examined the commonly used Brenner potentials in the… read moreAbstract: We have examined the commonly used Brenner potentials in the context of the thermodynamic properties of diamond. A simple optimized Brenner potential is proposed that provides very good predictions of the thermodynamic properties of diamond. It is shown that, compared to the experimental data, the lattice wave theory of molecular dynamics (LWT) with this optimized Brenner potential can accurately predict the temperature dependence of specific heat, lattice constant, Grüneisen parameters and coefficient of thermal expansion (CTE) of diamond. read less NOT USED (high confidence) N. Liao, W. Xue, and M. Zhang, “Molecular dynamics investigation of temperature dependent structural and fracture properties of amorphous silicon nitride,” Materials Science and Technology. 2011. link Times cited: 1 Abstract: Silicon nitride presents good mechanical properties and ther… read moreAbstract: Silicon nitride presents good mechanical properties and thermal stability at high temperature. As the experiments have limitations in the micro-/nanoscale characterisation of structural and fracture properties at high temperatures, atomistic simulation is the proper way to investigate the mechanism of this unique feature. In the present paper, the structural and fracture properties of amorphous silicon nitride (a-Si3N4) were studied at temperatures up to 1500 K. The simulation results consist of experiments on radial distribution function, temperature dependent yield stress and Young’s modulus. Based on the structural and mechanical results of α-Si3N4 at different temperatures, the structure–property correlations were discussed. read less NOT USED (high confidence) A. Dunn and D. Duffy, “A molecular dynamics study of diamond and graphite under tritium bombardment,” Journal of Applied Physics. 2011. link Times cited: 8 Abstract: Carbon has proven to be a promising plasma facing material i… read moreAbstract: Carbon has proven to be a promising plasma facing material in tokamak reactors because of its high thermal conductivity and limited radiative cooling as a plasma contaminant. It is used in a range of forms, mostly graphitic or amorphous. Diamond, however, has superior thermal properties to other forms of carbon but has been largely overlooked due to fears of graphitisation. Tritium retention is, perhaps, the major disadvantage of using carbon as a plasma facing material in a deuterium-tritium fusion reactor. Here, we use molecular dynamics to study the relative performance of diamond and graphite on exposure to tritium bombardment. We model the cumulative bombarded of diamond and graphitic surfaces with a high flux (1029 m−2 s−1) of low energy 15 eV tritium atoms. This was done for substrate temperatures in the range 300–2100 K. Below temperatures of graphitisation (∼1000 K) the diamondstructure confined tritium to the upper surface, this inhibited further structural damage and resulted in lower total retention. The graphitic surface allowed for deeper tritium penetration and therefore greater retention. These results corroborate with recent experimental evidence. read less NOT USED (high confidence) I. Y. Gotlib, A. K. Ivanov-Schitz, I. Murin, A. Petrov, and R. Zakalyukin, “Molecular dynamics simulation of silver bromide nanostructures in single-walled carbon nanotubes,” Physics of the Solid State. 2011. link Times cited: 2 NOT USED (high confidence) M. Friák et al., “Methodological challenges in combining quantum-mechanical and continuum approaches for materials science applications,” The European Physical Journal Plus. 2011. link Times cited: 26 NOT USED (high confidence) K. Eom, “Modeling the Interface between Biological and Synthetic Components in Hybrid Nanosystems.” 2011. link Times cited: 0 NOT USED (high confidence) J. Behler, “Neural network potential-energy surfaces in chemistry: a tool for large-scale simulations.,” Physical chemistry chemical physics : PCCP. 2011. link Times cited: 546 Abstract: The accuracy of the results obtained in molecular dynamics o… read moreAbstract: The accuracy of the results obtained in molecular dynamics or Monte Carlo simulations crucially depends on a reliable description of the atomic interactions. A large variety of efficient potentials has been proposed in the literature, but often the optimum functional form is difficult to find and strongly depends on the particular system. In recent years, artificial neural networks (NN) have become a promising new method to construct potentials for a wide range of systems. They offer a number of advantages: they are very general and applicable to systems as different as small molecules, semiconductors and metals; they are numerically very accurate and fast to evaluate; and they can be constructed using any electronic structure method. Significant progress has been made in recent years and a number of successful applications demonstrate the capabilities of neural network potentials. In this Perspective, the current status of NN potentials is reviewed, and their advantages and limitations are discussed. read less NOT USED (high confidence) D. Schebarchov, S. Hendy, E. Ertekin, and J. Grossman, “Interplay of wetting and elasticity in the nucleation of carbon nanotubes.,” Physical review letters. 2011. link Times cited: 14 Abstract: We use molecular dynamics and simple thermodynamic arguments… read moreAbstract: We use molecular dynamics and simple thermodynamic arguments to model the interaction between catalyst nanoparticles and carbon nanotube caps, and we illustrate how the competition between cap strain energy and adhesion plays a role in the lifting of these caps from the catalyst surface prior to tube elongation. Given a particular cap structure, we show that there is a lower bound on the catalyst size from which the cap can lift. This lower bound depends on the cap's spontaneous curvature and bending rigidity, as well as the catalyst binding strength, and it explains the mismatch between single-walled carbon nanotube and catalyst diameters observed in prior experiments. These findings offer new insight into the nucleation of carbon nanotubes, and they may lead to the design of catalysts that can better control nanotube structure. read less NOT USED (high confidence) M. Liao, Y.-C. Wang, S. Ju, T.-W. Lien, and L.-F. Huang, “Deformation behaviors of an armchair boron-nitride nanotube under axial tensile strains,” Journal of Applied Physics. 2011. link Times cited: 49 Abstract: Deformation behaviors of an (8,8) boron-nitride nanotube (BN… read moreAbstract: Deformation behaviors of an (8,8) boron-nitride nanotube (BNNT) under axial tensile strains were investigated via molecular dynamics (MD) simulations. The Tersoff potential was employed in the simulations with potential parameters determined by fitting the MD simulations results to those obtained from density functional theory calculations for BNNTs with the aid of the force-matching method. Variations in the axial stress, bond lengths, bond angles, radial buckling, and slip vectors with tensile strain were all examined. The axial, the radial, and tangential components of the slip vector were employed to monitor the local elongation, the local necking, and the local twisting deformations, respectively, near the tensile failure of the BNNT. From this study, it was noted that the BNNT started to fail at the failure strain of 26.7%. The components of the slip vector grew abruptly and rapidly after the failure strain, especially for the axial component. This implies that the local elongation dominates the ten... read less NOT USED (high confidence) H. Kim and V. Tomar, “Nanometer to micron scale mechanics of [100] silicon nanowires using atomistic simulations at accelerated time steps,” physica status solidi (a). 2011. link Times cited: 10 Abstract: Atomistic simulations have a unique capability to reveal the… read moreAbstract: Atomistic simulations have a unique capability to reveal the material deformation mechanisms and the corresponding deformation‐based constitutive behavior. However, atomistic simulations are limited by the accessible length and time scales. In the present work an equivalent crystal lattice method is used to perform mechanical deformation atomistic simulations of nanometer to micrometer sized silicon (Si) nanowires at accelerated time steps. The equivalent crystal lattice method's validity is verified by comparing the method's results with the results of classical molecular dynamics (MD) simulations at MD strain rates. The simulations predict that when the nanowire cross‐sectional size exceeds 50 nm, the dependence of the nanowire Young's moduli values on the changes in nanowire cross‐sectional size is considerably reduced. Analyses show a transition in nanowire failure mechanism from being ductile to being brittle with increase in the nanowire cross‐sectional size. Examinations of the surface effect reveal that below a critical surface to volume ratio value of 0.05 nm−1, the peak nanowire strength is independent of further reduction in the surface to volume ratio value. This finding places a size limit on the surface effect observed in Si nanowires. read less NOT USED (high confidence) F. Zirkelbach, B. Stritzker, K. Nordlund, J. Lindner, W. Schmidt, and E. Rauls, “Combined ab initio and classical potential simulation study on silicon carbide precipitation in silicon,” Physical Review B. 2011. link Times cited: 22 Abstract: Atomistic simulations on the silicon carbide precipitation i… read moreAbstract: Atomistic simulations on the silicon carbide precipitation in bulk silicon employing both, classical potential and first-principles methods are presented. The calculations aim at a comprehensive, microscopic understanding of the precipitation mechanism in the context of controversial discussions in the literature. For the quantum-mechanical treatment, basic processes assumed in the precipitation process are calculated in feasible systems of small size. The migration mechanism of a carbon 〈1 0 0〉 interstitial and silicon 〈11 0〉 self-interstitial in otherwise defect-free silicon are investigated using density functional theory calculations. The influence of a nearby vacancy, another carbon interstitial and a substitutional defect as well as a silicon self-interstitial has been investigated systematically. Interactions of various combinations of defects have been characterized including a couple of selected migration pathways within these configurations. Most of the investigated pairs of defects tend to agglomerate allowing for a reduction in strain. The formation of structures involving strong carbon–carbon bonds turns out to be very unlikely. In contrast, substitutional carbon occurs in all probability. A long range capture radius has been observed for pairs of interstitial carbon as well as interstitial carbon and vacancies. A rather small capture radius is predicted for substitutional carbon and silicon self-interstitials. Initial assumptions regarding the precipitation mechanism of silicon carbide in bulk silicon are established and conformability to experimental findings is discussed. Furthermore, results of the accurate first-principles calculations on defects and carbon diffusion in silicon are compared to results of classical potential simulations revealing significant limitations of the latter method. An approach to work around this problem is proposed. Finally, results of the classical potential molecular dynamics simulations of large systems are examined, which reinforce previous assumptions and give further insight into basic processes involved in the silicon carbide transition. read less NOT USED (high confidence) X. Zhang and Z.-wei Sun, “Influences of vacancy defects on thermal conductivities of Ge thin films,” Rare Metals. 2011. link Times cited: 3 NOT USED (high confidence) M. Daw, J. Lawson, and C. Bauschlicher, “Interatomic potentials for Zirconium Diboride and Hafnium Diboride,” Computational Materials Science. 2011. link Times cited: 19 NOT USED (high confidence) A. Page, K. Chandrakumar, Y. Wang, S. Irle, and K. Morokuma, “Mechanisms of Single-Walled Carbon Nanotube Nucleation, Growth and Chirality-Control: Insights from QM/MD Simulations.” 2011. link Times cited: 4 Abstract: The experimental characterisations of carbon nanotubes (CNTs… read moreAbstract: The experimental characterisations of carbon nanotubes (CNTs) (Iijima, 1991) and in particular single-walled CNTs (SWNTs) (Iijima & Ichihashi, 1993) in the early 1990s were landmark moments in 20th century science. The potential uses of these remarkable nanostructures are now becoming realised, as their synthesis is now routinely performed on the industrial scale. The initial successes in this respect were generally experimental techniques that were previously well established in other fields. This is particularly true of the chemical vapor deposition (CVD) and arc-discharge processes. The original experimental characterisation of SWNTs was in fact accomplished using nanotubes synthesised with the former method (Iijima & Ichihashi, 1993). The understanding of the way in which CNTs nucleate and grow was therefore synergic with the evolution and refinement of these synthetic methods. Indeed, the original mechanisms of CNT nucleation and growth were conceived from experimental observations. The most prevalent of these today is the vapor-liquid-solid (VLS) mechanism (Saito, 1995). According to this mechanism, SWNT nucleation growth is postulated to consist of three distinct stages. The first of these features a mixed carbon/catalyst vapor phase, from which co-condensation yields liquid catalyst-carbide nanoparticles. Typical catalysts in the growth of SWNTs are traditionally transition metals such as Fe, Ni, Co, Mo, and alloys thereof (see (Journet et al., 1997; Moisala et al., 2003; Harris, 2007), and references therein). The precipitation of atomic carbon from this liquid carbide phase takes place once the carbide phase is saturated with carbon. This precipitation yields the formation of solid phase CNTs. Due to the inherent limits in spatial and temporal resolutions that are furnished by experimental techniques and instrumentation, there inevitably remain questions regarding the VLS mechanism and CNT growth that, for now, cannot be answered from an experimental standpoint. There are several infamous examples in this respect. For instance, the mechanism of so-called ‘catalyst-free’ SWNT nucleation growth remains unknown, following the recent read less NOT USED (high confidence) I. Chang, “Structural Instability of Carbon Nanotube.” 2011. link Times cited: 0 Abstract: Since Iijima reported MWCNTs in 1991, CNTs have captured the… read moreAbstract: Since Iijima reported MWCNTs in 1991, CNTs have captured the intensive attention of researchers worldwide due to the combination of their expected structural perfection, small size, low density, high stiffness, high strength, and excellent electronic properties. CNTs have been widely adopted as microscopic probing tips (Dai et al., 1996; Hafner et al., 2001), nanocomposites reinforcements (Bower et al., 1998; Jin et al., 1998), nanotweezers (Kim & Lieber, 1999), and nanoactuators (Baughman et al., 1999; Fennimore et al., 2003) due to their slender and high aspect ratio structures. Meanwhile, nanotubes are also highly susceptible to buckling under compression, which is a structural instability. Once the buckling of CNTs occurs, the load-carrying capability would suddenly reduce and lead to possible catastrophic failure of the nanotubes, which significantly limit the loading strengths of the probing tips and compressive strengths of nanocomposite structures. Even the physical properties such as conductance of carbon nanotube can be influenced by the occurrence of buckling (Postma et al., 2001). Hence, it is crucial to understand the mechanism of nanotube buckling and even predict the onset of buckling in order to improve the nanotube applications. A review of the relevant literature shows that significant studies have employed both experimental (Falvo et al., 1997; Iijima et al., 1996; Thostenson & Chou, 2004; Waters et al., 2004) and theoretical (Ru, 2000; Yakobson & Avouris, 2001) approaches to investigate the bucking behaviors of CNTs. However due to the difficulties encountered at nanoscale, the experimental investigation of the buckling behaviors of CNTs remains a challenging problem and individual factors that affect buckling could not be easily identified. In theoretical study, the CNTs are commonly treated as beams or thin-shell tubes with certain wall thickness and elastic constants and, thus, it is difficult to consider the chirality and size effects on buckling behavior of CNTs because the continuum assumption disregards the discrete nature of atomic structures (Ru, 2000; Yakobson & Avouris, 2001). Some researchers attempted to introduce the atomic-continuum method combining the atomic detail in the continuum description and examine the various properties of CNTs (Chang, 2004; Guo et al., 2008; Li & Chou, 2003a, 2003b). The atomic-continuum method could shorten the computational time in larger atomic system. As the fast development and rapid advancement of computers, molecular approaches have become important tools and are widely applied to study the factors that would influence the buckling of CNTs (Buehler et al., 2004; Cao & Chen, 2006a, 2006b; Huh & Huh, 2008; Liew et al., 2004; Ozaki et al., 2000). Although some researchers already discussed various aspects of read less NOT USED (high confidence) J. A. Driscoll, S. Bubin, W. R. French, and K. Varga, “Time-dependent density functional study of field emission from nanotubes composed of C, BN, SiC, Si, and GaN,” Nanotechnology. 2011. link Times cited: 7 Abstract: Field emission from various types of nanotubes is studied by… read moreAbstract: Field emission from various types of nanotubes is studied by propagating the electronic density in real space and time using time-dependent density functional theory. Capped (5, 5) C, BN, SiC, Si, and GaN nanotubes are considered. The GaN, SiC, and Si nanotubes were found to be significantly better field emitters than C and BN nanotubes, both in terms of current magnitude and sharpness of peaks in the energy spectra. By analyzing the electronic structure of the various systems it is seen that the nanotubes with the highest currents have electron densities that extend significantly from the nanotube in the emission direction. read less NOT USED (high confidence) A. Sanson, “Bond thermal expansion and effective pair potential in crystals: the case of cadmium selenide,” Journal of Physics: Condensed Matter. 2011. link Times cited: 9 Abstract: The local dynamics of cadmium selenide (CdSe) with wurtzite … read moreAbstract: The local dynamics of cadmium selenide (CdSe) with wurtzite structure has been investigated by molecular dynamics simulations, using a many-body Tersoff potential. The radial distribution functions (i.e., the effective pair potentials) of the first seven coordination shells have been determined as a function of temperature, as well as their parallel and perpendicular mean-square relative atomic displacements. The bond thermal expansion of the first coordination shell is mainly due to the asymmetry of the effective pair potential. In contrast, the bond thermal expansion of the outer shells is mostly due to a rigid shift of the effective pair potential. This behavior, recently observed also in simple cubic monoatomic crystals, can be generalized and related to the correlation of atomic motion. Finally, a shift toward lower values of the first Se–Cd effective pair potential has been observed when increasing the temperature, confirming previous findings by extended x-ray absorption fine-structure measurements. Differently from superionic conductors like AgI and CuBr, in which this anomalous negative shift was tentatively explained by cluster distortion and cation diffusion, the negative shift of CdSe is related to the peculiar properties of the crystalline potential. read less NOT USED (high confidence) M. Liao, C. H. Cheng, and Y.-P. Lin, “Tensile and compressive behaviors of open-tip carbon nanocones under axial strains,” Journal of Materials Research. 2011. link Times cited: 23 Abstract: The influences of temperature, cone height, and apex angle o… read moreAbstract: The influences of temperature, cone height, and apex angle on the tensile and compressive behaviors of open-tip carbon nanocones (CNCs) under axial strains were examined. The tensile failure strain and failure load of the CNC were found to decline evidently as the system temperature increases. The average failure strain decreases with the growth in the cone height. Concerning compressive behaviors, the critical strain and critical load of the CNC reduce manifestly with the increase in the system temperature and the apex angle. As the cone height grows, the critical strain decreases evidently but the critical load has no obvious change. The buckling mode does not have much variation when the temperature increases. It displays a more distorted buckling pattern with the growth in the cone height and transfers from an axisymmetric pattern to an unsymmetrical and more warped pattern when the apex angle expands. read less NOT USED (high confidence) D. Ward, X. W. Zhou, B. M. Wong, F. Doty, and J. Zimmerman, “Accuracy of existing atomic potentials for the CdTe semiconductor compound.,” The Journal of chemical physics. 2011. link Times cited: 35 Abstract: CdTe and CdTe-based Cd(1-x)Zn(x)Te (CZT) alloys are importan… read moreAbstract: CdTe and CdTe-based Cd(1-x)Zn(x)Te (CZT) alloys are important semiconductor compounds that are used in a variety of technologies including solar cells, radiation detectors, and medical imaging devices. Performance of such systems, however, is limited due to the propensity of nano- and micro-scale defects that form during crystal growth and manufacturing processes. Molecular dynamics simulations offer an effective approach to study the formation and interaction of atomic scale defects in these crystals, and provide insight on how to minimize their concentrations. The success of such a modeling effort relies on the accuracy and transferability of the underlying interatomic potential used in simulations. Such a potential must not only predict a correct trend of structures and energies of a variety of elemental and compound lattices, defects, and surfaces but also capture correct melting behavior and should be capable of simulating crystalline growth during vapor deposition as these processes sample a variety of local configurations. In this paper, we perform a detailed evaluation of the performance of two literature potentials for CdTe, one having the Stillinger-Weber form and the other possessing the Tersoff form. We examine simulations of structures and the corresponding energies of a variety of elemental and compound lattices, defects, and surfaces compared to those obtained from ab initio calculations and experiments. We also perform melting temperature calculations and vapor deposition simulations. Our calculations show that the Stillinger-Weber parameterization produces the correct lowest energy structure. This potential, however, is not sufficiently transferrable for defect studies. Origins of the problems of these potentials are discussed and insights leading to the development of a more transferrable potential suitable for molecular dynamics simulations of defects in CdTe crystals are provided. read less NOT USED (high confidence) T. Ragab and C. Basaran, “The Unravelling of Open-Ended Single Walled Carbon Nanotubes Using Molecular Dynamics Simulations,” Journal of Electronic Packaging. 2011. link Times cited: 8 Abstract: The unravelling of (10, 10) and (18, 0) single-walled carbon… read moreAbstract: The unravelling of (10, 10) and (18, 0) single-walled carbon nanotubes (SWCNTs) is simulated using molecular dynamics simulations at different temperatures. Two different schemes are proposed to simulate the unravelling; completely restraining the last atom in the chain and only restraining it in the axial direction. The forces on the terminal atom in the unravelled chain in the axial and radial directions are reported till the separation of the atomic chain from the carbon nanotube structure. The force-displacement relation for a chain structure at different temperatures is calculated and is compared to the unravelling forces. The axial stresses in the body of the carbon nanotube are calculated and are compared to the failure stresses of that specific nanotube. Results show that the scheme used to unravel the nanotube and the temperature can only effect the duration needed before the separation of some or all of the atomic chain from the nanotube, but does not affect the unravelling forces. The separation of the atomic chain from the nanotube is mainly due to the impulsive excessive stresses in the chain due to the addition of a new atom and rarely due to the steady stresses in the chain. From the simulations, it is clear that the separation of the chain will eventually happen due to the closing structure occurring at the end of the nanotube that would not be possible in multiwalled nanotubes. read less NOT USED (high confidence) K. Fichthorn, Y. Tiwary, T. Hammerschmidt, P. Kratzer, and M. Scheffler, “Analytic many-body potential for GaAs(001) homoepitaxy: Bulk and surface properties,” Physical Review B. 2011. link Times cited: 14 Abstract: We employ atomic-scale simulation methods to investigate bul… read moreAbstract: We employ atomic-scale simulation methods to investigate bulk and surface properties of an analytic TersoffAbell type potential for describing interatomic interactions in GaAs. The potential is a modified form of that proposed by Albe and colleagues [Phys. Rev. B 66, 035205 (2002)] in which the cut-off parameters for the As-As interaction have been shortened. With this modification, many bulk properties predicted by the potential for solid GaAs are the same as those in the original potential, but properties of the GaAs(001) surface better match results from first-principles calculations with density-functional theory (DFT). We tested the ability of the potential to reproduce the phonon dispersion and heat capacity of bulk solid GaAs by comparing it to experiment and the overall agreement is good. In the modified potential, the GaAs(001) β2(2 × 4) reconstruction is favored under As-rich growth conditions in agreement with DFT calculations. Additionally, the binding energies and diffusion barriers for a Ga adatom on the β2(2 × 4) reconstruction generally match results from DFT calculations. These studies indicate that the potential is suitable for investigating aspects of GaAs(001) homoepitaxy. read less NOT USED (high confidence) D. Wei, Y. Song, and F. Wang, “A simple molecular mechanics potential for μm scale graphene simulations from the adaptive force matching method.,” The Journal of chemical physics. 2011. link Times cited: 54 Abstract: A simple molecular mechanics force field for graphene (PPBE-… read moreAbstract: A simple molecular mechanics force field for graphene (PPBE-G) was created by force matching the density functional theory Perdew-Burke-Ernzerhof forces using the adaptive force matching method recently developed in our group. The PPBE-G potential was found to provide significantly more accurate forces than other existing force fields. Several properties of graphene, such as Young's modulus, bending rigidity, and thermal conductivity, have been studied with our potential. The calculated properties are in good agreement with corresponding density functional theory and experimental values. The thermal conductivity calculated with reverse non-equilibrium molecular dynamics depends sensitively on graphene size thus requiring the simulation of large sheets for convergence. Since the PPBE-G potential only contains simple additive energy expressions, it is very computationally efficient and is capable of modeling large graphene sheets in the μm length scale. read less NOT USED (high confidence) J. Carrete, R. Longo, and L. J. Gallego, “Prediction of phonon thermal transport in thin GaAs, InAs and InP nanowires by molecular dynamics simulations: influence of the interatomic potential,” Nanotechnology. 2011. link Times cited: 12 Abstract: A number of different potentials are currently being used in… read moreAbstract: A number of different potentials are currently being used in molecular dynamics simulations of semiconductor nanostructures. Confusion can arise if an inappropriate potential is used. To illustrate this point, we performed direct molecular dynamics simulations to predict the room temperature lattice thermal conductivity λ of thin GaAs, InAs and InP nanowires. In each case, simulations performed using the classical Harrison potential afforded values of λ about an order of magnitude smaller than those obtained using more elaborate potentials (an Abell–Tersoff, as parameterized by Hammerschmidt et al for GaAs and InAs, and a potential of Vashishta type for InP). These results will be a warning to those wishing to use computer simulations to orient the development of quasi-one-dimensional systems as heat sinks or thermoelectric devices. read less NOT USED (high confidence) C. Wu, T. Fang, and C. Chan, “A molecular dynamics simulation of the mechanical characteristics of a C60-filled carbon nanotube under nanoindentation using various carbon nanotube tips,” Carbon. 2011. link Times cited: 43 NOT USED (high confidence) J. Haskins, A. Kinaci, C. Sevik, H. Sevinçli, G. Cuniberti, and T. Çagin, “Control of thermal and electronic transport in defect-engineered graphene nanoribbons.,” ACS nano. 2011. link Times cited: 302 Abstract: The influence of the structural detail and defects on the th… read moreAbstract: The influence of the structural detail and defects on the thermal and electronic transport properties of graphene nanoribbons (GNRs) is explored by molecular dynamics and non-equilibrium Green's function methods. A variety of randomly oriented and distributed defects, single and double vacancies, Stone-Wales defects, as well as two types of edge form (armchair and zigzag) and different edge roughnesses are studied for model systems similar in sizes to experiments (>100 nm long and >15 nm wide). We observe substantial reduction in thermal conductivity due to all forms of defects, whereas electrical conductance reveals a peculiar defect-type-dependent response. We find that a 0.1% single vacancy concentration and a 0.23% double vacancy or Stone-Wales concentration lead to a drastic reduction in thermal conductivity of GNRs, namely, an 80% reduction from the pristine one of the same width. Edge roughness with an rms value of 7.28 Å leads to a similar reduction in thermal conductivity. Randomly distributed bulk vacancies are also found to strongly suppress the ballistic nature of electrons and reduce the conductance by 2 orders of magnitude. However, we have identified that defects close to the edges and relatively small values of edge roughness preserve the quasi-ballistic nature of electronic transport. This presents a route of independently controlling electrical and thermal transport by judicious engineering of the defect distribution; we discuss the implications of this for thermoelectric performance. read less NOT USED (high confidence) J. Haskins, A. Kinaci, and T. Çagin, “Thermal conductivity of Si–Ge quantum dot superlattices,” Nanotechnology. 2011. link Times cited: 18 Abstract: Quantum dot superlattices (QDSLs) have been proposed for the… read moreAbstract: Quantum dot superlattices (QDSLs) have been proposed for thermoelectric applications as a means of increasing thermal conductivity, σ, and reducing the lattice thermal conductivity, κl, to increase the dimensionless thermoelectric figure of merit, ZT. To fully exploit the thermoelectric potential of Si–Ge quantum dot superlattices (QDSLs), we performed a thorough study of the structural interplay of QDSLs with κl using Green–Kubo theory and molecular dynamics. It was found that the resulting κl has less dependence on the arrangement of the dots than to dot size and spacing. In fact, regardless of arrangement or concentration, QDSLs show a minimum κl at a dot diameter of 1.4–1.6 nm and can reach values as low as 0.8–1.0 W mK−1, increasing ZT by orders of magnitude over bulk Si and Ge. The drastic reduction of thermal conductivity in such a crystalline system is shown to be the result of both the stress caused by the dots as well as the quality of the Si–Ge interface. read less NOT USED (high confidence) C. Jeong, S. Datta, and M. S. Lundstrom, “Full dispersion versus Debye model evaluation of lattice thermal conductivity with a Landauer approach,” Journal of Applied Physics. 2011. link Times cited: 99 Abstract: Using a full dispersion description of phonons, the thermal … read moreAbstract: Using a full dispersion description of phonons, the thermal conductivities of bulk Si and Bi2Te3 are evaluated using a Landauer approach and related to the conventional approach based on the Boltzmann transport equation. A procedure to extract a well-defined average phonon mean-free-path from the measured thermal conductivity and given phonon-dispersion is presented. The extracted mean-free-path has strong physical significance and differs greatly from simple estimates. The use of simplified dispersion models for phonons is discussed, and it is shown that two different Debye temperatures must be used to treat the specific heat and thermal conductivity (analogous to the two different effective masses needed to describe the electron density and conductivity). A simple technique to extract these two Debye temperatures is presented and the limitations of the method are discussed. read less NOT USED (high confidence) L. Marqués, L. Pelaz, M. Aboy, P. López, and I. Santos, “Atomistic process simulation for future generation nanodevices,” Proceedings of the 8th Spanish Conference on Electron Devices, CDE’2011. 2011. link Times cited: 0 Abstract: We use predictive atomistic simulation techniques to study t… read moreAbstract: We use predictive atomistic simulation techniques to study the front-end processing of nanometric multigate Si devices. We show that, after the amorphizing implants required for doping, annealing produces imperfect regrowth of the device body due to the presence of lateral surfaces. Based on our simulation results, we propose technological alternatives to overcome this defected recrystallization that leads to the degradation of the device performance. read less NOT USED (high confidence) C. R. Dandekar and Y. Shin, “Molecular dynamics based cohesive zone law for describing Al–SiC interface mechanics,” Composites Part A-applied Science and Manufacturing. 2011. link Times cited: 178 NOT USED (high confidence) A. A. Valladares et al., “New Approaches to the Computer Simulation of Amorphous Alloys: A Review,” Materials. 2011. link Times cited: 17 Abstract: In this work we review our new methods to computer generate … read moreAbstract: In this work we review our new methods to computer generate amorphous atomic topologies of several binary alloys: SiH, SiN, CN; binary systems based on group IV elements like SiC; the GeSe2 chalcogenide; aluminum-based systems: AlN and AlSi, and the CuZr amorphous alloy. We use an ab initio approach based on density functionals and computationally thermally-randomized periodically-continued cells with at least 108 atoms. The computational thermal process to generate the amorphous alloys is the undermelt-quench approach, or one of its variants, that consists in linearly heating the samples to just below their melting (or liquidus) temperatures, and then linearly cooling them afterwards. These processes are carried out from initial crystalline conditions using short and long time steps. We find that a step four-times the default time step is adequate for most of the simulations. Radial distribution functions (partial and total) are calculated and compared whenever possible with experimental results, and the agreement is very good. For some materials we report studies of the effect of the topological disorder on their electronic and vibrational densities of states and on their optical properties. read less NOT USED (high confidence) N. Zhang et al., “Deformation mechanisms in silicon nanoparticles,” Journal of Applied Physics. 2011. link Times cited: 65 Abstract: We report here on the observation of dislocation nucleation … read moreAbstract: We report here on the observation of dislocation nucleation and glide in silicon nanoparticles, after phase transformation from diamond cubic to β-tin crystal structure, within the formed β-tin metallic phase region in atomistic simulations of indentation. The simulation results provide an explanation of the super-high hardness of silicon nanoparticles measured in experiments. By comparing the simulation results with experimental measurement of hardness, we are able to evaluate the performance of two widely used interatomic potential functions: Stillinger–Weber and Tersoff potentials. Through simulations, we have found a critical size of silicon nanoparticles where there is a change in deformation mechanisms, strength, and hardness. The effect of the applied strain rate on simulation results is also investigated. read less NOT USED (high confidence) B. Lee, S. Park, Y. Choi, and J.-S. Lee, “Molecular dynamics study on bulk melting induced by ultrashort pulse laser,” Journal of Mechanical Science and Technology. 2011. link Times cited: 2 NOT USED (high confidence) M. Yasuda, R. Mimura, H. Kawata, and Y. Hirai, “Computational study on structural modification of single-walled carbon nanotubes by electron irradiation,” Journal of Applied Physics. 2011. link Times cited: 12 Abstract: Molecular dynamics simulation is carried out to investigate … read moreAbstract: Molecular dynamics simulation is carried out to investigate structural modifications of single-walled carbon nanotubes by electron irradiation. Electron irradiation effects are introduced by the Monte Carlo method using an elastic collision cross section. We demonstrate the applicability of the method to the analysis of structural modifications with electron beam such as cutting, shrinking, and bending. The behavior of the carbon atoms in the nanotube during the structural modification is revealed. The simulation results also show the variation of the mechanical properties of carbon nanotubes by electron irradiation. read less NOT USED (high confidence) A. Eletskii, I. Iskandarova, A. Knizhnik, and D. N. Krasikov, “Graphene: fabrication methods and thermophysical properties,” Physics-Uspekhi. 2011. link Times cited: 145 Abstract: Current research on graphene, a 2D hexagonal structure of ca… read moreAbstract: Current research on graphene, a 2D hexagonal structure of carbon atoms, is presented. The structural features of and basic methods for obtaining graphene are discussed. The phononic properties of graphene and their dependent graphene characteristics are examined. In particular, how to measure the thermal conductivity of graphene is discussed and recent experimental and theoretical advances on this subject are described. The stability problems of 2D crystal structures are addressed and the dimensional effects in the dependence of graphene characteristics on the lateral size are discussed. Simulation methods for determining the phononic characteristics and thermal conductivity of graphene are reviewed. read less NOT USED (high confidence) E. Oh, “Elastic properties of various boron-nitride structures,” Metals and Materials International. 2011. link Times cited: 31 NOT USED (high confidence) L. C. Saha, S. A. Mian, H. Kim, J. K. Saha, M. Matin, and J. Jang, “Molecular Dynamics of Carbon Nanotubes Deposited on a Silicon Surface via Collision: Temperature Dependence,” Bulletin of The Korean Chemical Society. 2011. link Times cited: 1 Abstract: We investigated how temperature influences the structural an… read moreAbstract: We investigated how temperature influences the structural and energetic dynamics of carbon nanotubes (CNTs) undergoing a high-speed impact with a Si (110) surface. By performing molecular dynamics simulations in the temperature range of 100 - 300 K, we found that a low temperature CNT ends up with a higher vibrational energy after collision than a high temperature CNT. The vibrational temperature of CNT increases by increasing the surface temperature. Overall, the structural and energy relaxation of low temperature CNTs are faster than those of high temperature CNTs. read less NOT USED (high confidence) J. Behler, “Atom-centered symmetry functions for constructing high-dimensional neural network potentials.,” The Journal of chemical physics. 2011. link Times cited: 997 Abstract: Neural networks offer an unbiased and numerically very accur… read moreAbstract: Neural networks offer an unbiased and numerically very accurate approach to represent high-dimensional ab initio potential-energy surfaces. Once constructed, neural network potentials can provide the energies and forces many orders of magnitude faster than electronic structure calculations, and thus enable molecular dynamics simulations of large systems. However, Cartesian coordinates are not a good choice to represent the atomic positions, and a transformation to symmetry functions is required. Using simple benchmark systems, the properties of several types of symmetry functions suitable for the construction of high-dimensional neural network potential-energy surfaces are discussed in detail. The symmetry functions are general and can be applied to all types of systems such as molecules, crystalline and amorphous solids, and liquids. read less NOT USED (high confidence) N. Liao, X. Tao, M. Zhang, and W. Xue, “Effects of temperature and strain rate on fracture properties of amorphous silicon nitride,” Journal of Materials Science: Materials in Electronics. 2011. link Times cited: 5 NOT USED (high confidence) Z. Zhang, A. Chatterjee, C. Grein, A. Ciani, and P. Chung, “Molecular Dynamics Simulation of MBE Growth
of CdTe/ZnTe/Si,” Journal of Electronic Materials. 2011. link Times cited: 6 NOT USED (high confidence) X. W. Zhou and R. Jones, “Effects of cutoff functions of Tersoff potentials on molecular dynamics simulations of thermal transport,” Modelling and Simulation in Materials Science and Engineering. 2011. link Times cited: 19 Abstract: Past molecular dynamics studies of thermal transport have pr… read moreAbstract: Past molecular dynamics studies of thermal transport have predominantly used Stillinger–Weber potentials. As materials continuously shrink, their properties increasingly depend on defect and surface effects. Unfortunately, Stillinger–Weber potentials are best used for diamond-cubic-like bulk crystals. They cannot represent the energies of many metastable phases, nor can they accurately predict the energetics of defective and surface regions. To study nanostructured materials, where these regions can dominate thermal transport, the accuracy of Tersoff potentials in representing these structures is more desirable. Based upon an analysis of thermal transport in a GaN system, we demonstrate that the cutoff function of the existing Tersoff potentials may lead to problems in determining the thermal conductivity. To remedy this issue, improved cutoff schemes are proposed and evaluated. read less NOT USED (high confidence) E. Oh, “Application of the Continuum-Lattice Thermodynamics.” 2011. link Times cited: 0 NOT USED (high confidence) P.-A. Cazade, P. Bordat, I. Baraille, R. Brown, W. Smith, and I. Todorov, “DL_POLY_2 adaptations for solvation studies,” Molecular Simulation. 2011. link Times cited: 9 Abstract: Adaptations of the molecular dynamics engine DL_POLY_2 were … read moreAbstract: Adaptations of the molecular dynamics engine DL_POLY_2 were recently made to facilitate the investigation of questions arising mainly in the study of solvation dynamics. This paper presents the new facilities, with consideration of practical points for their efficient use and illustrative results obtained with them. Supplementary Information provides further details of their implementation to encourage future improvements and extensions. The adaptations of DL_POLY_2 for solvation studies are: • Species by species and inter-species breakdown of the total energy for systems containing several species, such as solutions or models of adsorption, with, as an illustration, diffusion of a particular water molecule in a microporous silica zeolite, silicalite. The new facilities allow correlation of the trajectory of the molecule with its interaction with the host matrix. • Solvation-induced spectral shifts, illustrated by the absorption shift and Stokes shift of a cyanoaromatic dye in solution in methanol. We discuss the relative importance of different contributions to the total spectral shift. • Free energies by thermodynamic integration, illustrated by calculation of the excess free energy of liquid dimethylsulphoxide. We examine the use of different weighting functions for the mixed Hamiltonian to avoid or to delay divergence in thermodynamic integration. read less NOT USED (high confidence) I. Y. Gotlib, A. K. Ivanov-Shitz, I. Murin, A. Petrov, and R. Zakalyukin, “Computer simulation of AgI nanostructures in single-wall carbon nanotubes,” Inorganic Materials. 2010. link Times cited: 1 NOT USED (high confidence) Y. He et al., “Molecular Dynamics Study of the Switching Mechanism of Carbon-Based Resistive Memory,” IEEE Transactions on Electron Devices. 2010. link Times cited: 21 Abstract: An electric molecular dynamics (MD) method is proposed, wher… read moreAbstract: An electric molecular dynamics (MD) method is proposed, where an electroheat solver is introduced into a traditional MD simulation to perform a coupled calculation. The switching mechanism of carbon-based resistive random access memory is studied through this method, and the heat generation and propagation driven by an electric current pulse are simulated during the switching process. Graphitic filament breakage and growth are responsible for resistance switching. The simulation shows that a short and strong voltage pulse induces graphitic filament breakage, resulting in a high-resistance state, whereas a moderate but much longer pulse is required to enable filament growth, resulting in a low-resistance state. Key factors such as the bias condition and the power supply for such switching process are also studied. The results are quantitatively consistent with experimental measurements. read less NOT USED (high confidence) M. Wojdyr, S. Khalil, Y. Liu, and I. Szlufarska, “Energetics and structure of ⟨0 0 1⟩ tilt grain boundaries in SiC,” Modelling and Simulation in Materials Science and Engineering. 2010. link Times cited: 35 Abstract: We have developed a scheme, based on molecular dynamics, tha… read moreAbstract: We have developed a scheme, based on molecular dynamics, that allows finding minimum energy structures of grain boundaries (GBs) with relatively large cell of non-identical displacements. This scheme has been used to study symmetric ⟨0 0 1⟩ tilt GBs in cubic SiC. We analyze atomic configurations of dislocation cores found in low-angle GBs and we report structural units found in high-angle GBs. In contrast to what had been previously assumed we find that the lowest energy structures often do not favor perfect coordination of GB atoms and that most of the analyzed GBs contain 6- and 7-atom rings. We tested the applicability of existing empirical potentials to studies of high-symmetry GB structures in SiC and we found the Tersoff potential to be most appropriate. Knowledge of detailed atomic structures of GBs is essential for future studies of GB-controlled phenomena in SiC, such as diffusion of metallic fission product through this material or GB strengthening. read less NOT USED (high confidence) F. Zirkelbach, B. Stritzker, K. Nordlund, J. Lindner, W. Schmidt, and E. Rauls, “Defects in carbon implanted silicon calculated by classical potentials and first-principles methods,” Physical Review B. 2010. link Times cited: 7 Abstract: A comparative theoretical investigation of carbon interstiti… read moreAbstract: A comparative theoretical investigation of carbon interstitials in silicon is presented. Calculations using classical potentials are compared to first-principles density-functional theory calculations of the geometries, formation, and activation energies of the carbon dumbbell interstitial, showing the importance of a quantummechanical description of this system. In contrast to previous studies, the present first-principles calculations of the interstitial carbon migration path yield an activation energy that excellently matches the experiment. The bond-centered interstitial configuration shows a net magnetization of two electrons, illustrating the need for spin-polarized calculations. read less NOT USED (high confidence) J. Guénolé, J. Godet, and L. Pizzagalli, “Determination of activation parameters for the core transformation of the screw dislocation in silicon,” Modelling and Simulation in Materials Science and Engineering. 2010. link Times cited: 13 Abstract: The non-dissociated screw dislocation in a model covalent ma… read moreAbstract: The non-dissociated screw dislocation in a model covalent material like silicon is known to exist in three possible stable core configurations. We performed calculations combining the nudged elastic band technique and a semi-empirical description in order to determine mechanisms and activation parameters for transforming one core into another. Our results showed that a glide core is necessarily reconstructed, since the energy barrier for reconstruction is easily overcome by thermal activation. Conversely, a transformation between a shuffle and a glide core appears unlikely at low temperature, which raises questions about the existence of the double-period glide configuration. read less NOT USED (high confidence) K. Kholmurodov, G. Aru, and K. Yasuoka, “Molecular dynamics simulations of the interaction of carbon nanotube and a carbon disulfide solvent,” Natural Science. 2010. link Times cited: 4 Abstract: An analysis of the molecular dynamics (МD) of the interactio… read moreAbstract: An analysis of the molecular dynamics (МD) of the interaction between a carbon nanotube (CNT) and a carbon disulfide active solvent (CS2) has been carried out. The aim of the present work is to estimate the dynamical and structural behavior of the CNTCS2 system at different relative atomic concentrations and under temperature changes. The structural radial distribution functions and the dynamical configurations have been built for a CNT interacting with a CS2 solvent. A nontrivial observation for the CNTCS2 system is that the solvent carbon disulfide atoms make up a patterned (layered) formation around the carbon nanotube. read less NOT USED (high confidence) S. Kaminski, “Theoretical studies on structural, dynamic and spectroscopic properties of phytochrome photoreceptors.” 2010. link Times cited: 1 NOT USED (high confidence) M. Chorley and D. Walker, “Performance analysis of a hybrid MPI/OpenMP application on multi-core clusters,” J. Comput. Sci. 2010. link Times cited: 82 NOT USED (high confidence) W. Hanfu, C. Weiguo, G. Yanjun, and J. Hao, “Thermal transport property of Ge 34 and d-Ge investigated by molecular dynamics and the Slack’s equation,” Chinese Physics B. 2010. link Times cited: 9 Abstract: In this study, we evaluate the values of lattice thermal con… read moreAbstract: In this study, we evaluate the values of lattice thermal conductivity κL of type II Ge clathrate (Ge34) and diamond phase Ge crystal (d-Ge) with the equilibrium molecular dynamics (EMD) method and the Slack's equation. The key parameters of the Slack's equation are derived from the thermodynamic properties obtained from the lattice dynamics (LD) calculations. The empirical Tersoff's potential is used in both EMD and LD simulations. The thermal conductivities of d-Ge calculated by both methods are in accordance with the experimental values. The predictions of the Slack's equation are consistent with the EMD results above 250 K for both Ge34 and d-Ge. In a temperature range of 200–1000 K, the κL value of d-Ge is about several times larger than that of Ge34. read less NOT USED (high confidence) Z. Li, S. Wang, Z. Wang, X. Zu, F. Gao, and W. J. Weber, “Mechanical behavior of twinned SiC nanowires under combined tension-torsion and compression-torsion strain,” Journal of Applied Physics. 2010. link Times cited: 12 Abstract: The mechanical behavior of twinned silicon carbide (SiC) nan… read moreAbstract: The mechanical behavior of twinned silicon carbide (SiC) nanowires under combined tension-torsion and compression-torsion is investigated using molecular dynamics simulations with an empirical potential. The simulation results show that both the tensile failure stress and buckling stress decrease under combined tension-torsional and combined compression-torsional strain, and they decrease with increasing torsional rate under combined loading. The torsion rate has no effect on the elastic properties of the twinned SiC nanowires. The collapse of the twinned nanowires takes place in a twin stacking fault of the nanowires. read less NOT USED (high confidence) D. Taylor, “Potential Energy Surface Mapping of Energetic Materials Using Coupled Cluster Theory,” 2010 DoD High Performance Computing Modernization Program Users Group Conference. 2010. link Times cited: 3 Abstract: 1,1-diamino-2,2-dinitroethylene (Fox-7) has proven to be a p… read moreAbstract: 1,1-diamino-2,2-dinitroethylene (Fox-7) has proven to be a promising energetic material due to its low shock sensitivity and high thermal stability, and has been the subject of several Department of Defense (DoD) theoretical investigations employing Hartree-Fock and density functional theory. However, it is well-known that many energetic crystals have a significant binding contribution resulting from dispersion, a phenomena that is not accurately described by computational methods that are not explicitly correlated. This paper details the use of a state-of-the art quantum chemistry method, coupled-cluster theory, to compute a six-dimensional, dimer potential energy surface of the Fox-7 energetic molecule, which will be used to develop a pair potential for use in molecular dynamics simulations. In addition, a dimer potential energy function determined using symmetry-adapted perturbation theory is described and molecular dynamics simulations using the fitted potential are presented. read less NOT USED (high confidence) N. J. Lee, charles. r. welch, and charles. r. welch, “Atomistic Simulations of Tribological Properties of Ultra-Thin Carbon Nanotube Films on Silicon,” 2010 DoD High Performance Computing Modernization Program Users Group Conference. 2010. link Times cited: 0 Abstract: Molecular dynamics simulations are used to study relationshi… read moreAbstract: Molecular dynamics simulations are used to study relationships between material morphology, adhesion, and sliding friction in carbon nanotube (CNT) coatings at the nanoscale. Two controlled quantities, CNT chirality and vacancy defects, are found to have significant effects on CNT coating adhesion to Si surfaces and sliding friction in turn. For example, using free energy calculations, a CNT of chirality (10,0) with a corresponding diameter of 7.777Å was observed to have an adhesion energy-per-unit-length of approximately three-times that of a CNT with (5,5) chirality and corresponding diameter of 6.732Å. Simulations of aligned carbon nanotube arrays containing various vacancy defect densities in sliding contact with Si substrates were also performed. Friction and wear were shown to increase with defect density. Similar studies are underway to investigate how other characteristics of CNTs in addition to chirality, such as CNT length distribution and defect concentration, affect adhesion and friction in CNT-Si coatings. Outcomes may shed light on fundamental principles governing, for example, sliding interfaces in micro- and nano-electro-mechanical and other tribological systems. read less NOT USED (high confidence) V. Samvedi and V. Tomar, “The role of straining and morphology in thermal conductivity of a set of Si–Ge superlattices and biomimetic Si–Ge nanocomposites,” Journal of Physics D: Applied Physics. 2010. link Times cited: 32 Abstract: The ability to alter the thermal and mechanical properties o… read moreAbstract: The ability to alter the thermal and mechanical properties of nanostructures by tailoring nanoscale morphology has led to vast activity in applications such as high figure of merit (ZT) thermoelectric, microelectronic and optoelectronic devices. Two types of nanostructures that have gained significant attention are Si–Ge superlattices and Si–Ge biomimetic nanocomposites, in which one phase is distributed in the other phase in a staggered biomimetic manner similar to biological materials. A systematic comparison of the atomistic factors that affect their thermal behaviour under different extents of straining at a range of temperatures remains to be performed. In this investigation, such analyses are performed for a set of Si–Ge superlattices and Si–Ge biomimetic nanocomposites using non-equilibrium molecular dynamics (NEMD) simulations at three different temperatures (400, 600 and 800 K) and at strain levels varying between −10% and 10%. Analyses indicate that the nanoscale morphology differences between the superlattices and the nanocomposites lead to a striking contrast in the phonon spectral density, interfacial thermal boundary resistance and thermal conductivity. In the case of the nanocomposites, morphology variation at the nanoscale and the tensile or compressive straining at temperatures from 400 to 800 K do not have a significant effect on the changes in thermal conductivity values. Such factors, however, strongly influence the thermal conductivity of superlattices. The thickness of the nanocomposites, however, is found to influence the thermal conductivity values significantly under straining, with the effect of straining increasing with increasing nanocomposite thickness. A relation based on the effective medium approach is shown to fit the NEMD calculated nanocomposite thermal conductivity values. read less NOT USED (high confidence) A. Jauho, M. Engelund, T. Markussen, and M. Brandbyge, “Ab initio vibrations in nonequilibrium nanowires,” arXiv: Mesoscale and Nanoscale Physics. 2010. link Times cited: 1 Abstract: We review recent results on electronic and thermal transport… read moreAbstract: We review recent results on electronic and thermal transport in two different quasi one-dimensional systems: Silicon nanowires (SiNW) and atomic gold chains. For SiNW's we compute the ballistic electronic and thermal transport properties on equal footing, allowing us to make quantitative predictions for the thermoelectric properties, while for the atomic gold chains we evaluate microscopically the damping of the vibrations, due to the coupling of the chain atoms to the modes in the bulk contacts. Both approaches are based on the combination of density-functional theory, and nonequilibrium Green's functions. read less NOT USED (high confidence) P. Eyben et al., “Analysis and modeling of the high vacuum scanning spreading resistance microscopy nanocontact on silicon,” Journal of Vacuum Science & Technology B. 2010. link Times cited: 40 Abstract: Within this paper, the authors propose a refined high vacuum… read moreAbstract: Within this paper, the authors propose a refined high vacuum scanning spreading resistance microscopy (HV-SSRM) electromechanical nanocontact model based on experimental results as well as molecular dynamics (MD) simulation results. The formation under the tip of a nanometer-sized pocket of β-tin, a metastable metalliclike phase of silicon (also named Si-II), acting as a virtual probe is demonstrated. This gives a reasonable explanation for the superior SSRM spatial resolution as well as for the electrical properties at the Schottky-like SSRM contact. Moreover, the impact of the doping concentration on the plastic deformation of silicon for different species using micro-Raman combined with indentation experiments is studied. In order to elucidate the superior results of SSRM measurements when performed under high vacuum conditions, the impact of humidity on the mechanical deformation and Si-II formation is also analyzed using MD and SSRM experimental results. read less NOT USED (high confidence) A. Liu, K. W. Wang, and C. Bakis, “Multiscale analysis of the effect of carbon nanotube (CNT) functionalization on damping characteristics of CNT-based composites,” Smart Structures and Materials + Nondestructive Evaluation and Health Monitoring. 2010. link Times cited: 1 Abstract: In this paper, the influence of carbon nanotube functionaliz… read moreAbstract: In this paper, the influence of carbon nanotube functionalization on interfacial shear strength and hence on damping characteristics of CNT-based polymeric composites is investigated with a multiscale model. The sequential multiscale approach consists of two parts. First, the interfacial shear strength between the functionalized nanotube and the polymer is calculated by simulating a CNT pull-out test using the molecular dynamics method. The strength values obtained from atomic simulation are then applied to a micromechanical damping model of a representative unit cell of a CNT/polymer composite under cyclic loading. The analysis results indicate that the nanotube functionalization increases the interfacial shear strength. The increased shear strength can either enhance or reduce the effective loss factor of the composite, depending on the operational stress range. read less NOT USED (high confidence) A. Galashev, “Simulation of silicon nanoparticles stabilized by hydrogen at high temperatures,” Journal of Nanoparticle Research. 2010. link Times cited: 4 NOT USED (high confidence) L. Pelaz, L. Marqués, M. Aboy, I. Santos, P. López, and R. Duffy, “Simulation of p-n junctions: Present and future challenges for technologies beyond 32 nm,” Journal of Vacuum Science & Technology B. 2010. link Times cited: 1 Abstract: Ion implantation continues being the dominant technique to i… read moreAbstract: Ion implantation continues being the dominant technique to introduce dopants in Si devices. With the device feature size in the nanometer scale, the accurate and detailed description of as-implanted dopant and damage profiles is becoming key as advanced annealing techniques are almost diffusionless. The demanding requirements for ultrashallow junction formation are stimulating the development of improved and detailed models for molecular implants and for the kinetics of amorphous damage. Additional challenges arise in the doping of advanced architectures, such as fin field effect transistors, because the introduction of highly tilted ions is quite inefficient and, in addition, the regrowth of amorphous regions in narrow structures is hampered by the slow regrowth at free interfaces and {111} planes. Atomistic simulations play a relevant role to provide the understanding for the development of simplified physically based models computationally more efficient. read less NOT USED (high confidence) J. Y. Park, C.-H. Park, J. S. Park, K. Kong, H. Chang, and S. Im, “Multiscale computations for carbon nanotubes based on a hybrid QM/QC (quantum mechanical and quasicontinuum) approach,” Journal of The Mechanics and Physics of Solids. 2010. link Times cited: 12 NOT USED (high confidence) C. Hwang, Y. Wang, Q. Kuo, and J.-M. Lu, “Molecular dynamics study of multi-walled carbon nanotubes under uniaxial loading,” Physica E-low-dimensional Systems & Nanostructures. 2010. link Times cited: 30 NOT USED (high confidence) R. Soulairol and F. Cleri, “Interface structure of silicon nanocrystals embedded in an amorphous silica matrix,” Solid State Sciences. 2010. link Times cited: 17 NOT USED (high confidence) G. Lucas, M. Bertolus, and L. Pizzagalli, “An environment-dependent interatomic potential for silicon carbide: calculation of bulk properties, high-pressure phases, point and extended defects, and amorphous structures,” Journal of Physics: Condensed Matter. 2010. link Times cited: 41 Abstract: An interatomic potential has been developed to describe inte… read moreAbstract: An interatomic potential has been developed to describe interactions in silicon, carbon and silicon carbide, based on the environment-dependent interatomic potential (EDIP) (Bazant et al 1997 Phys. Rev. B 56 8542). The functional form of the original EDIP has been generalized and two sets of parameters have been proposed. Tests with these two potentials have been performed for many properties of SiC, including bulk properties, high-pressure phases, point and extended defects, and amorphous structures. One parameter set allows us to keep the original EDIP formulation for silicon, and is shown to be well suited for modelling irradiation-induced effects in silicon carbide, with a very good description of point defects and of the disordered phase. The other set, including a new parametrization for silicon, has been shown to be efficient for modelling point and extended defects, as well as high-pressure phases. read less NOT USED (high confidence) J. A. Thomas, R. M. Iutzi, and A. McGaughey, “Thermal conductivity and phonon transport in empty and water-filled carbon nanotubes,” Physical Review B. 2010. link Times cited: 135 Abstract: The thermal conductivities of empty and water-filled single-… read moreAbstract: The thermal conductivities of empty and water-filled single-walled carbon nanotubes CNTs with diameters between 0.83 and 1.36 nm and lengths ranging from 200 to 1400 nm are predicted using molecular dynamics simulation. Using a direct application of the Fourier law, we explore the transition to fully diffusive phonon transport with increasing CNT length. For empty CNTs, we find that the CNT length required to obtain fully diffusive phonon transport decreases from 1090 nm for the 0.83-nm-diameter CNT to 510 nm for the 1.36nm-diameter CNT. The magnitude of the fully diffusive thermal conductivity also decreases monotonically with increasing CNT diameter. We find that the fully diffusive thermal conductivity of water-filled CNTs is 20%–35% lower than that of empty CNTs. By examining the empty and water-filled CNT density of states, we attribute the thermal conductivity reductions to an increase in low-frequency acoustic phonon scattering due to interactions with the water molecules. read less NOT USED (high confidence) Y. Xiao, W. Dong, and H. F. Busnengo, “Reactive force fields for surface chemical reactions: A case study with hydrogen dissociation on Pd surfaces.,” The Journal of chemical physics. 2010. link Times cited: 35 Abstract: An approach based on reactive force fields is applied to the… read moreAbstract: An approach based on reactive force fields is applied to the parametrization of potential energy surface (PES) for chemical reactions on surfaces with a benchmark system, H(2)/Pd(111). We show that a simple reactive force field based on the second moment approximation does not allow for obtaining reliable results of reaction dynamics for the considered system. With a more elaborate reactive force field, i.e., reactive bond order (REBO) force field, we succeeded in obtaining a reliable PES for H(2)/Pd(111). The accuracy of the constructed REBO force field is carefully checked through various tests including the comparison not only between energies calculated with density functional theory and those with REBO force field but also between the available results of ab initio molecular dynamics simulations and those with our force field. Moreover, our REBO force field is endowed with some transferability since the force field constructed with a database containing only information on H(2)/Pd(111) allows for obtaining also accurate results for H(2)/Pd(100) and qualitatively correct results for H(2)/Pd(110) without any refitting. With the help of our reactive force field, the molecular dynamics simulation for the dissociation of H(2) on the considered Pd surfaces is speeded up by five orders of magnitude compared to ab initio molecular dynamics method. The demonstrated reliability and the very high computational efficiency of reactive force fields open extremely attractive perspectives for studying large-scale complex reacting systems. read less NOT USED (high confidence) C. Romero, J. C. Noyola, U. Santiago, R. Valladares, A. Valladares, and A. A. Valladares, “A New Approach to the Computer Modeling of Amorphous Nanoporous Structures of Semiconducting and Metallic Materials: A Review,” Materials. 2010. link Times cited: 18 Abstract: We review our approach to the generation of nanoporous mater… read moreAbstract: We review our approach to the generation of nanoporous materials, both semiconducting and metallic, which leads to the existence of nanopores within the bulk structure. This method, which we have named as the expanding lattice method, is a novel transferable approach which consists first of constructing crystalline supercells with a large number of atoms and a density close to the real value and then lowering the density by increasing the volume. The resulting supercells are subjected to either ab initio or parameterized—Tersoff-based—molecular dynamics processes at various temperatures, all below the corresponding bulk melting points, followed by geometry relaxations. The resulting samples are essentially amorphous and display pores along some of the “crystallographic” directions without the need of incorporating ad hoc semiconducting atomic structural elements such as graphene-like sheets and/or chain-like patterns (reconstructive simulations) or of reproducing the experimental processes (mimetic simulations). We report radial (pair) distribution functions, nanoporous structures of C and Si, and some computational predictions for their vibrational density of states. We present numerical estimates and discuss possible applications of semiconducting materials for hydrogen storage in potential fuel tanks. Nanopore structures for metallic elements like Al and Au also obtained through the expanding lattice method are reported. read less NOT USED (high confidence) T. Li, D. Donadio, and G. Galli, “Nucleation of tetrahedral solids: A molecular dynamics study of supercooled liquid silicon.,” The Journal of chemical physics. 2009. link Times cited: 33 Abstract: The early stages of crystallization of tetrahedral systems r… read moreAbstract: The early stages of crystallization of tetrahedral systems remain largely unknown, due to experimental limitations in spatial and temporal resolutions. Computer simulations, when combined with advanced sampling techniques, can provide valuable details about nucleation at the atomistic level. Here we describe a computational approach that combines the forward flux sampling method with molecular dynamics, and we apply it to the study of nucleation in supercooled liquid silicon. We investigated different supercooling temperatures, namely, 0.79, 0.86, and 0.95 of the equilibrium melting point T(m). Our results show the calculated nucleation rates decrease from 5.52+/-1.75x10(28) to 4.77+/-3.26x10(11) m(-3) s(-1) at 0.79 and 0.86 T(m), respectively. A comparison between simulation results and those of classical nucleation theory shows that the free energy of the liquid solid interface gamma(ls) inferred from our computations differ by about 28% from that obtained for bulk liquid solid interfaces. However the computed values of gamma(ls) appear to be rather insensitive to supercooling temperature variations. Our simulations also yield atomistic details of the nucleation process, including the atomic structure of critical nuclei and lifetime distributions of subcritical nuclei. read less NOT USED (high confidence) A. Galashev, “Molecular dynamics study of hydrogenated silicon clusters at high temperatures,” Molecular Physics. 2009. link Times cited: 5 Abstract: This paper reports on a study of the stability of silicon cl… read moreAbstract: This paper reports on a study of the stability of silicon clusters of intermediate size at a high temperature. The temperature dependence of the physicochemical properties of 60- and 73-atom silicon nanoparticles are investigated using the molecular dynamics method. The 73-atom particles have a crystal structure, a random atomic packing, and a packing formed by inserting a 13-atom icosahedron into a 60-atom fullerene. They are surrounded by a ‘coat’ from 60 atoms of hydrogen. The nanoassembled particle at the presence of a hydrogen ‘coat’ has the most stable number (close to four) of Si–Si bonds per atom. The structure and kinetic properties of a hollow single-layer fullerene-structured Si60 cluster are considered in the temperature range 10 K ≤ T ≤ 1760 K. Five series of calculations are conducted, with a simulation of several media inside and outside the Si60 cluster, specifically, the vacuum and interior spaces filled with 30 and 60 hydrogen atoms with and without the exterior hydrogen environment of 60 atoms. Fullerene surrounded by a hydrogen ‘coat’ and containing 60 hydrogen atoms in the interior space has a higher stability. Such clusters have smaller self-diffusion coefficients at high temperatures. The fullerene stabilized with hydrogen is stable to the formation of linear atomic chains up to the temperatures 270–280 K. read less NOT USED (high confidence) I. Chang and B.-C. Chiang, “Mechanical buckling of single-walled carbon nanotubes: Atomistic simulations,” Journal of Applied Physics. 2009. link Times cited: 14 Abstract: Various geometric sizes and helical types (i.e., armchair, z… read moreAbstract: Various geometric sizes and helical types (i.e., armchair, zigzag, and chiral) of single-walled carbon nanotubes (CNTs) are considered in molecular dynamics simulations in order to systematically examine the length-to-radius ratio and chirality effects on the buckling mechanism. The buckling strain is getting smaller as the CNT becomes slender for most nanotubes, which implies that the slender nanotubes have lower buckling resistance regardless of the radius of the CNTs. The applicability of the continuum buckling theory, which has been well developed for thin tubes, on predicting the buckling strain of the CNT is also examined. In general, the corresponding buckling strain and buckling type predicted by the continuum buckling theory could agree reasonably well with simulation results except at the transition region due to the competition of two buckling mechanisms. read less NOT USED (high confidence) Y. Xu and G. Li, “Strain effect analysis on phonon thermal conductivity of two-dimensional nanocomposites,” Journal of Applied Physics. 2009. link Times cited: 51 Abstract: In this paper, we present a model that combines lattice dyna… read moreAbstract: In this paper, we present a model that combines lattice dynamics and the phonon Boltzmann transport equation (BTE) to analyze strain effect on the cross-plane phonon thermal conductivity of silicon wire-germanium host nanocomposites. For a given strain condition, mechanical strain is translated to crystal lattice deformation by using the Cauchy–Born rule. Strain-dependent phonon thermal properties of Si and Ge obtained from lattice dynamics with Tersoff empirical interatomic potential are then incorporated into the BTE, in which ballistic transport within one material and diffuse scattering between Si–Ge interface are employed. The strain-dependent BTE is solved numerically on an unstructured triangular mesh by using a finite volume method. Nanocomposites with different Si nanowire cross sections are also investigated. The results show that the phonon thermal conductivity of the nanocomposites can be significantly decreased (or increased) by a tensile (or compressive) strain. With the same length change, ... read less NOT USED (high confidence) T. Nakajima and K. Shintani, “Molecular dynamics study of energetics of graphene flakes,” Journal of Applied Physics. 2009. link Times cited: 18 Abstract: Molecular dynamics simulations for graphene flakes of variou… read moreAbstract: Molecular dynamics simulations for graphene flakes of various shapes are performed. The equilibrium structures of graphene flakes are obtained. Round, hexagonal, and rectangular graphene flakes are dealt with, and their sizes are varied from a few angstroms to 200 A. It is shown that for round and hexagonal graphene flakes of small size, the edge configuration influences their energy in equilibrium. Graphene nanoribbons (GNRs) of various aspect ratios are equilibrated at low temperature. The energies of the equilibrated graphene flakes with zigzag (ZZ) edges are lower than the energies of the equilibrated graphene flakes with armchair (AC) edges. This result corresponds to the scanning tunneling microscopy observations in the literature. The atomic bonds on the edges of graphene flakes with both edge configurations are reconstructed. The bond lengths of such reconstructed edges are smaller than the lengths of the atomic bonds inside them. Therefore, free graphene flakes undergo compressive edge stress and... read less NOT USED (high confidence) H.-yang Song and X. Zha, “The effects of boron doping and boron grafts on the mechanical properties of single-walled carbon nanotubes,” Journal of Physics D: Applied Physics. 2009. link Times cited: 11 Abstract: The effects of boron doping and boron grafts on the mechanic… read moreAbstract: The effects of boron doping and boron grafts on the mechanical behaviour of armchair (6, 6) and zigzag (10, 0) single-walled carbon nanotubes (SWCNTs) under axial loading are investigated using the molecular dynamics (MD) simulation method. The results show that Young's moduli, the tension strength, the buckling loads and the buckling strains of SWCNTs decrease after functionalization. The influences of the distribution density of functionalization on Young's moduli of SWCNTs are also systematically studied. The results show that Young's moduli of SWCNTs gradually decrease with the increase in the distribution density. For three types of distribution density, i.e. 6.25%, 12.5% and 25.0%, the decreased magnitudes of Young's moduli of armchair (6, 6) SWCNT for boron doping (respectively boron grafts) are 10.4%, 16.9% and 31.2% (respectively 5.5%, 7.9% and 14.1%). The results further indicate that the degree of degradation of Young's moduli of SWCNT is more sensitive to boron doping than to boron grafts under the condition of the same distribution density. The general conclusions derived from this work may be of importance in devising high-performance Mg matrix composite materials. read less NOT USED (high confidence) Z. Chen, Z. Yu, P. Lu, and Y. Liu, “Point defects in relaxed and strained Si studied by molecular dynamics method,” 2009 Asia Communications and Photonics conference and Exhibition (ACP). 2009. link Times cited: 0 Abstract: Molecular dynamics simulations using the Tersoff potential h… read moreAbstract: Molecular dynamics simulations using the Tersoff potential have been performed to investigate the perturbation effects caused by different kinds of the point defects (vacancies and substitutional impurities) on the strained and relaxed Si matrices. Lattice distortion, mean square displacement, pair correlation function and vibrational spectra are studied. It is found that Ge substitution lead to little distortion of the Si matrix. However, vacancy and C substitution lead to more distortion. Diffusion directions of Si atoms around different kinds of point defects are different. When C substitution is introduced in the relaxed Si matrices or Ge substitution is introduced in the strained Si matrices, the system needs longer time to reach equilibrium. The crystallinity and symmetry degree of relaxed Si matrices are more satisfying than those of strained Si matrices after relaxation. Changes of the vibrational spectra caused by vacancy and C substitution are obvious. All above have a great effect on the photoelectric properties of the materials. read less NOT USED (high confidence) M. Horsch, J. Vrabec, M. Bernreuther, and H. Hasse, “Poiseuille flow of liquid methane in nanoscopic graphite channels by molecular dynamics simulation,” arXiv: Mesoscale and Nanoscale Physics. 2009. link Times cited: 7 Abstract: MD simulations of methane confined between graphite walls wi… read moreAbstract: MD simulations of methane confined between graphite walls with up to 4,800,000 interaction sites, i.e., carbon atoms and methane molecules, are conducted, where the channel width is varied to include both the boundary-dominated regime and the transition to the continuum regime. This proves that MD can be used today to cover the entire range of characteristic lengths for which continuum methods fail. read less NOT USED (high confidence) S. Irle, Y. Ohta, Y. Okamoto, A. Page, Y. Wang, and K. Morokuma, “Milestones in molecular dynamics simulations of single-walled carbon nanotube formation: A brief critical review,” Nano Research. 2009. link Times cited: 47 NOT USED (high confidence) L. Hale, X. W. Zhou, J. Zimmerman, N. Moody, R. Ballarini, and W. Gerberich, “Molecular dynamics simulation of delamination of a stiff, body-centered-cubic crystalline film from a compliant Si substrate,” Journal of Applied Physics. 2009. link Times cited: 7 Abstract: Compliant substrate technology offers an effective approach … read moreAbstract: Compliant substrate technology offers an effective approach to grow high-quality multilayered films, of importance to microelectronics and microelectromechanical systems devices. By using a thin, soft substrate to relieve the mismatch strain of an epitaxial film, the critical thickness of misfit dislocation formation in the overlayer is effectively increased. Experiments have indicated that stiff films deposited onto Si substrates can delaminate at the interface. However, the atomic mechanisms of the deformation and the fracture of the films have not been well studied. Here, we have applied molecular dynamics simulations to study the delamination of a stiff body-centered-cubic crystalline film from a compliant Si substrate due to tensile loading. The observed mechanical behavior is shown to be relatively independent of small changes in temperature, loading rate, and system size. Fracture occurs at the interface between the two materials resulting in nearly atomically clean surfaces. Dislocations are seen ... read less NOT USED (high confidence) J. Kang, Y. G. Choi, Y. Kim, Q. Jiang, O. Kwon, and H. Hwang, “The frequency of cantilevered double-wall carbon nanotube resonators as a function of outer wall length,” Journal of Physics: Condensed Matter. 2009. link Times cited: 17 Abstract: Analysis of vibrational characteristics of cantilevered doub… read moreAbstract: Analysis of vibrational characteristics of cantilevered double-walled carbon nanotube (DWCNT) resonators is carried out based on classical molecular dynamics simulation. Vibrational frequencies of DWCNTs are less than those of single-walled carbon nanotubes (SWCNTs) with the same length and the same diameter because of van der Waals intertube interaction. For DWCNTs with short outer walls, the resonance frequency initially increases with increasing outer nanotube length and then decreases after a peak, and thus the result can be modeled by a Gaussian distribution. The frequency of DWCNT resonators with short outer walls is a maximum when the length of the outer wall is about 72.5% of the length of the inner wall. read less NOT USED (high confidence) S. Sakong, P. Kratzer, X. Han, T. Balgar, and E. Hasselbrink, “Isotope effects in the vibrational lifetime of hydrogen on germanium(100): theory and experiment.,” The Journal of chemical physics. 2009. link Times cited: 11 Abstract: Combining first-principles calculations and sum frequency ge… read moreAbstract: Combining first-principles calculations and sum frequency generation spectroscopy, we elucidate the microscopic details in the relaxation of the stretching vibration of hydrogen adsorbed on Ge(100). The dominant decay channels involve energy transfer from the stretching to the hydrogen bending modes, with the remaining energy difference being transferred to or from substrate phonons. The coupling between stretching and bending modes is treated from first principles using the calculated multidimensional adiabatic potential energy surface, while the coupling to phonons is treated in perturbation theory. For a surface solely saturated with light hydrogen, we calculate a vibrational lifetime of 1.56 ns at 400 K, in good agreement with experiment, and find a similar temperature dependence of the lifetime in both experiment and theory. The calculations show that the stretching energy dissipates to a vibrational state involving four bending quanta of hydrogen, concurrently absorbing a thermally excited surface phonon related to the Ge dimer rocking mode. For a Ge surface saturated with a mixture of H and D, our experiments find that the relaxation rate of the H stretching vibration is markedly increased when compared to a surface saturated with H only. Experimentally, a single decay is observed although H and D atoms will statistically pair on the surface dimers. The vibrational lifetime of the Ge-H stretching mode is up to six times shorter in the presence of adsorbed D atoms. The calculated relaxation rates are consistent with the experimentally observed trend. The theoretical analysis shows that the breaking of symmetry within the Ge surface dimer due to coadsorption of D opens up further relaxation channels that involve absorption or emission of a substrate phonon at various energies. Moreover, the calculations predict an even shorter vibrational lifetime of the Ge-D stretch mode due to efficient coupling to the Ge dimer rocking mode. read less NOT USED (high confidence) V. Samvedi and V. Tomar, “The role of interface thermal boundary resistance in the overall thermal conductivity of Si–Ge multilayered structures,” Nanotechnology. 2009. link Times cited: 74 Abstract: Nanoscale engineered materials with tailored thermal propert… read moreAbstract: Nanoscale engineered materials with tailored thermal properties are desirable for applications such as highly efficient thermoelectric, microelectronic and optoelectronic devices. It has been shown earlier that by judiciously varying the interface thermal boundary resistance (TBR), thermal conductivity in nanostructures can be controlled. In the presented investigation, the role of TBR in controlling thermal conductivity at the nanoscale is analyzed by performing non-equilibrium molecular dynamics (NEMD) simulations to calculate thermal conductivity of a range of Si–Ge multilayered structures with 1–3 periods, and with four different layer thicknesses. The analyses are performed at three different temperatures (400, 600 and 800 K). As expected, the thermal conductivity of all layered structures increases with the increase in the number of periods as well as with the increase in the monolayer thickness. Invariably, we find that the TBR offered by the interface nearest to the hot reservoir is the highest. This effect is in contrast to the usual notion that each interface contributes equally to the heat transfer resistance in a layered structure. Findings also suggest that for high period structures the average TBR offered by the interfaces is not equal. Findings are used to derive an analytical expression that describes period-length-dependent thermal conductivity of multilayered structures. read less NOT USED (high confidence) A. Dongare, L. Zhigilei, A. Rajendran, and B. Lamattina, “Interatomic potentials for atomic scale modeling of metal–matrix ceramic particle reinforced nanocomposites,” Composites Part B-engineering. 2009. link Times cited: 15 NOT USED (high confidence) X. Liu, D. Cheng, and D. Cao, “The structure, energetics and thermal evolution of SiGe nanotubes,” Nanotechnology. 2009. link Times cited: 20 Abstract: The structure, energetics and thermal behavior of all the Si… read moreAbstract: The structure, energetics and thermal behavior of all the SiGe nanotubes in armchair and zigzag structures (n = 4–10) and two atomic arrangement types are investigated using the ab initio method and classical molecular dynamics simulations. Gearlike and puckering configurations of SiGe nanotubes are obtained. The simulation results indicate that large-diameter nanotubes are more stable than small-diameter ones. Moreover, the type 1 (alternating atom arrangement type) zigzag nanotubes are always more energetically favorable than the type 2 (layered atom arrangement type) zigzag nanotubes. During the melting process, the melting-like structural transformations from the initial nanotube to the compact nanowire take place first, and then the compact nanowires are changed into agglomerate structures at higher temperature. It is also found that the melting-like temperatures of Ge-substituted silicon nanotubes decrease with increase of the Ge concentration. read less NOT USED (high confidence) B. Lee, “Comparative Study of the Nanomechanics of Si Nanowires,” Transactions of The Korean Society of Mechanical Engineers A. 2009. link Times cited: 0 Abstract: Mechanical properties of silicon nanowires are presented. In… read moreAbstract: Mechanical properties of silicon nanowires are presented. In particular, predictions from the calculations based on different length scales, first principles calculations, atomistic calculations, and continuum nanomechanical theory, are compared for silicon nanowires. There are several elements that determine the mechanics of silicon nanowires, and the complicated balance between these elements is studied. Specifically, the role of the increasing surface effects and reduced dimensionality predicted from theories of different length scales are compared. As a prototype, a Tersoff-based empirical potential has been used to study the mechanical properties of silicon nanowires including the Young’s modulus. The results significantly deviates from the first principles predictions as the size of wire is decreased. 기호설명 V[N] : N개의 원자를 가진 시스템의 총 결합에너지 n : 푸아송 비(Poisson’s ratio) B : 체적 탄성률(Bulk modulus) (GPa) E read less NOT USED (high confidence) J. Godet, P. Hirel, S. Brochard, and L. Pizzagalli, “Dislocation nucleation from surface step in silicon: The glide set versus the shuffle set,” physica status solidi (a). 2009. link Times cited: 19 Abstract: We have studied the mechanisms of dislocation nucleation fro… read moreAbstract: We have studied the mechanisms of dislocation nucleation from surface defects in silicon submitted to various stresses and temperatures. Molecular dynamics simulations with three classical potentials have shown the existence of two different plastic modes in silicon which can be activated from surfaces. At high temperatures and low stresses dislocations nucleation occurs in the {111} glide set planes, while at low temperatures and large stresses it occurs in the {111} shuffle set planes. The analysis of dislocation cores and kinks shows structures like those well known in bulk silicon. This study supports the idea that plasticity in crystalline Si structures could be governed by dislocation nucleation from surfaces. read less NOT USED (high confidence) J. Kioseoglou, E. Kalesaki, L. Lymperakis, G. Dimitrakopulos, P. Komninou, and T. Karakostas, “Polar AlN/GaN interfaces: Structures and energetics,” physica status solidi (a). 2009. link Times cited: 24 Abstract: The structures and energies of {0001} interfaces between GaN… read moreAbstract: The structures and energies of {0001} interfaces between GaN and AlN are studied by both ab initio methods and molecular dynamics using the Tersoff empirical inter‐atomic potential. Based on experimental observations, structural configurations depending on polarity and atomic stacking are considered. It is evidenced by both ab initio and empirical calculations that III‐polar interfaces are energetically favourable compared to the N‐polar. In addition, the ab initio analysis shows that the wurtzite interfacial stacking is energetically preferable compared to zinc blende. A linear dependence between the bandgap energy and the strain in AlN/GaN heterostructures is found. It is shown that the bandgap increases with increasing c/a ratio while an inverse proportionality relationship is observed in the case of lattice parameter a. However, biaxial strain is found to flatten this variation considerably. Empirical potential calculations yield the interfacial energies, taking into account the relaxation of the lattice mismatch due to arrays of misfit dislocations and in combination with ab initio methods estimate that the energetically favourable III polarity interface exhibits at least 18% larger critical thickness than the N polar. read less NOT USED (high confidence) J. Adhikari, “Miscibility of In x Ga1−x As alloys: a study using atomistic simulations,” Molecular Physics. 2009. link Times cited: 4 Abstract: Atomistic simulations are used in combination with the two p… read moreAbstract: Atomistic simulations are used in combination with the two potential energy functions, namely, the Valence Force Field (VFF) model and the Tersoff model, to study the solution thermodynamics of In x Ga1−x As alloy. The simulation data, in the form of a T − x diagram, is contrasted with the results obtained by using the Ho and Stringfellow approach. It is observed that for the VFF model, the upper critical solution temperature obtained from simulation data is approximately 850 K, which is higher than the 729 K predicted by the Ho and Stringfellow treatment. The composition range for which the two-phase heterogeneous region exists is wider than that predicted by the Ho and Stringfellow approach. The Tersoff model predicts a complex miscibility diagram, where the 850 K temperature corresponds to the approximate ‘eutectic’ temperature. Further improvement of model predictions may be made possible by investigation of temperature and composition dependent interaction parameter in a modified regular solution theory, and investigation of non-random, non-ideal solution models in the Ho and Stringfellow treatment, development of temperature dependent VFF model parameters and adjustment of Tersoff model parameters to account for longer range interactions which exist at temperatures above 850 K. The miscibility diagram constructed using the Tersoff model simulation data can be used to provide information on the phase stability and equilibrium Indium content at any given temperature for the crystalline solid solution. read less NOT USED (high confidence) M. Makeev, S. Sundaresh, and D. Srivastava, “Shock-wave propagation through pristine a-SiC and carbon-nanotube-reinforced a-SiC matrix composites,” Journal of Applied Physics. 2009. link Times cited: 21 Abstract: We report on the results of a large-scale molecular dynamics… read moreAbstract: We report on the results of a large-scale molecular dynamics simulation study of shock-wave propagation in pristine amorphous silicon carbide and carbon-nanotube-reinforced amorphous silicon carbide matrix composites. We seek to understand the effects of ensembles of aligned nanotubes, both transversely and longitudinally oriented, on the shock-wave structure and dynamics and structural rearrangements taking place in the shock-loaded composite materials. It is found that the presence of aligned nanotubes in amorphous silicon carbide matrix leads to a reduction of shock-wave velocity and modifies the shock-wave front structure in a wide range of impact velocities. The temporal evolution of density profiles behind the shock-wave front is studied and conclusions are drawn regarding the effects of carbon nanotubes on the structural rearrangements in the shock-loaded composite materials. The mechanisms of carbon nanotube failure under shock loadings and their implications for energy dissipation rates in compos... read less NOT USED (high confidence) S. Ahmad and M. Wahab, “Atomistic study of elastic constants and thermodynamic properties of zinc – blende CuBr,” Crystal Research and Technology. 2009. link Times cited: 1 Abstract: Elastic constants and thermodynamic properties of zinc blend… read moreAbstract: Elastic constants and thermodynamic properties of zinc blende CuBr are calculated using a molecular dynamics simulation based on Tersoff empirical interatomic potential. We find that the elastic modulus C11 is bigger than the other theoretical and experimental data, while C12 is somewhat small. The elastic modulus C44 is in good agreement with the theoretical calculations and experiment. Thermal expansion coefficient, specific heat capacity at constant volume and thermal conductivity are in very well agreement with experimental data. (© 2009 WILEY‐VCH Verlag GmbH & Co. KGaA, Weinheim) read less NOT USED (high confidence) C. Qin, W. Hengan, W. Yu, and W. Xiu-xi, “Orientation and Rate Dependence of Wave Propagation in Shocked Beta-SiC from Atomistic Simulations,” Chinese Physics Letters. 2009. link Times cited: 1 Abstract: The orientation dependence of planar wave propagation in bet… read moreAbstract: The orientation dependence of planar wave propagation in beta-SiC is studied via the molecular dynamics (MD) method. Simulations are implemented under impact loadings in four main crystal directions, i.e., (100), (110), (111), and (112). The dispersion of stress states in different directions increases with rising impact velocity, which implies the anisotropic characteristic of shock wave propagation for beta-SiC materials. We also obtain the Hugoniot relations between the shock wave velocity and the impact velocity, and find that the shock velocity falls into a plateau above a threshold of impact velocity. The shock velocity of the plateaux is dependent on the shock directions, while (111) and (112) can be regarded as equivalent directions as they almost reach the same plateau. A comparison between the atomic stress from MD and the stress from Rankine–Hugoniot jump conditions is also made, and it is found that they agree with each other very well. read less NOT USED (high confidence) J. Végh and D. Graves, “Molecular Dynamics Simulations of Ar+–Organic Polymer Interactions,” Plasma Processes and Polymers. 2009. link Times cited: 16 Abstract: MD simulations of ion―organic styrene-containing polymer int… read moreAbstract: MD simulations of ion―organic styrene-containing polymer interactions are reviewed and compared to experiment. We report results for argon ion bombardment of PS, PαMS and P4MS. All three polymers exhibit the formation of a similar, highly cross-linking, dehydrogenated near-surface damaged layer at steady state, but small changes in the structure of the polymer (P4MS and PαMS are isomers) can lead to drastic changes in the initial transient sputtering of the material. We correlate this behavior to differences in radiation chemistry (P4MS and PS are cross-linking while PaMS is a chain scission polymer), and examine how the behavior in MD may relate to larger-scale experimental results, such as roughness formation. read less NOT USED (high confidence) V. L. Kovalev and M. Pogosbekyan, “Analysis of catalytic properties of siliconized heat-shielding coatings,” Moscow University Mechanics Bulletin. 2009. link Times cited: 2 NOT USED (high confidence) L. Yang, G. Pourtois, M. Caymax, A. Ceulemans, and M. Heyns, “Ge-H empirical potential and simulation of Si epitaxy on Ge(100) by chemical vapor deposition from SiH4,” Physical Review B. 2009. link Times cited: 6 Abstract: A parameter set describing the Ge-H bonds in the framework o… read moreAbstract: A parameter set describing the Ge-H bonds in the framework of the many-body interatomic potential proposed by Tersoff and Murty has been derived using first-principles calculations. The potential was fitted to reproduce structural, energetic, and vibration properties of gas phase germanium hydrides and radicals. It demonstrates a good transferability for the description of hydrogen terminated germanium surfaces. The potential has been used to simulate the epitaxial growth of a Si layer on a Ge (cid:1) 100 (cid:2) surface using SiH 4 precursor molecules. The obtained results faithfully reproduce the impact of chemisorbed hydrogen on the mechanism of Ge diffusion in the grown Si layer. read less NOT USED (high confidence) M. C. Wu and J. Hsu, “Thermal conductivity of carbon nanotubes with quantum correction via heat capacity,” Nanotechnology. 2009. link Times cited: 27 Abstract: The molecular dynamics simulation with the use of the empiri… read moreAbstract: The molecular dynamics simulation with the use of the empirical Tersoff potential is applied to study the thermal characteristics of carbon nanotubes (CNTs). A thermal reservoir is devised to control the temperature and to exact the heat flux input. The quantum effect defining the precise temperature from the absolute zero Kelvin and up is included by applying phonon (boson) statistics to the specific heat. At low temperature, the CNT thermal conductivity increases with increasing temperature. After reaching its peak, which is limited by the length of the CNT, it decreases with temperature due to phonon–phonon interactions. The scaling law of thermal conductivity as a function of temperature and length is inferred from the simulation results, allowing prediction for CNTs of much longer length beyond what MD could simulate. read less NOT USED (high confidence) L. Xiong and Y. Chen, “Coarse-grained simulations of single-crystal silicon,” Modelling and Simulation in Materials Science and Engineering. 2009. link Times cited: 42 Abstract: An atomistic-continuum field theory (AFT) and its applicatio… read moreAbstract: An atomistic-continuum field theory (AFT) and its applications in coarse-grained (CG) simulations of single-crystal silicon are presented in this paper. Formulation of AFT and its finite element (FE) implementations are introduced. The robustness and stability of the numerical implementation are demonstrated through the simulations of dynamic wave propagation, meeting and separation in silicon. Under uniaxial tension, the elastic constant and the tensile strength of single-crystal silicon are measured. The internal deformations within the unit cells are monitored during the loading process. It is observed that there is a critical bond stretch with the onset of the material instability. Under a critical uniaxial compressive loading, silicon undergoes a first-order phase transition from the diamond structure to the metallic β-Sn structure. Under three-point bending, the local stress and strain are measured. In this paper, all the CG simulation results are also directly compared with molecular dynamics (MD) simulation results. Although the majority of the degrees of freedom have been eliminated, it is shown that CG simulations with linear FE shape functions are able to simulate nonlinear large-deformation material behavior with good accuracy. However, with the occurrence of material instability, CG simulations will no longer be able to capture the localized phenomena such as dislocations or stacking fault. read less NOT USED (high confidence) J. Rawle and P. Howes, “Modelling x-ray scattering from quantum dots using Keating energy-minimised structures,” The European Physical Journal Special Topics. 2009. link Times cited: 2 NOT USED (high confidence) M. Ceriotti, G. Bussi, and M. Parrinello, “Nuclear quantum effects in solids using a colored-noise thermostat.,” Physical review letters. 2009. link Times cited: 161 Abstract: We present a method, based on a non-Markovian Langevin equat… read moreAbstract: We present a method, based on a non-Markovian Langevin equation, to include quantum corrections to the classical dynamics of ions in a quasiharmonic system. By properly fitting the correlation function of the noise, one can vary the fluctuations in positions and momenta as a function of the vibrational frequency, and fit them so as to reproduce the quantum-mechanical behavior, with minimal a priori knowledge of the details of the system. We discuss the application of the thermostat to diamond and to ice Ih. We find that results in agreement with path-integral methods can be obtained using only a fraction of the computational effort. read less NOT USED (high confidence) H. S. Park, “Quantifying the size-dependent effect of the residual surface stress on the resonant frequencies of silicon nanowires if finite deformation kinematics are considered,” Nanotechnology. 2009. link Times cited: 68 Abstract: There are two major objectives to the present work. The firs… read moreAbstract: There are two major objectives to the present work. The first objective is to demonstrate that, in contrast to predictions from linear surface elastic theory, when nonlinear, finite deformation kinematics are considered, the residual surface stress does impact the resonant frequencies of silicon nanowires. The second objective of this work is to delineate, as a function of nanowire size, the relative contributions of both the residual (strain-independent) and the surface elastic (strain-dependent) parts of the surface stress to the nanowire resonant frequencies. Both goals are accomplished by using the recently developed surface Cauchy–Born model, which accounts for nanoscale surface stresses through a nonlinear, finite deformation continuum mechanics model that leads to the solution of a standard finite element eigenvalue problem for the nanowire resonant frequencies. In addition to demonstrating that the residual surface stress does impact the resonant frequencies of silicon nanowires, we further show that there is a strong size dependence to its effect; in particular, we find that consideration of the residual surface stress alone leads to significant errors in predictions of the nanowire resonant frequency, with an increase in error with decreasing nanowire size. Correspondingly, the strain-dependent part of the surface stress is found to have an increasingly important effect on the resonant frequencies of the nanowires with decreasing nanowire size. read less NOT USED (high confidence) J. Hsieh, C. Chen, J.-L. Chen, C.-I. Chen, and C. Hwang, “The nanoindentation of a copper substrate by single-walled carbon nanocone tips: a molecular dynamics study,” Nanotechnology. 2009. link Times cited: 14 Abstract: This study dealt with deep nanoindentation of a copper subst… read moreAbstract: This study dealt with deep nanoindentation of a copper substrate with single-walled carbon nanocones (SWCNCs) as the proximal probe tip, using molecular dynamics (MD) simulations. As an important feature, during the indentation the end part of the SWCNC tip will suffer a narrowing effect due to the radial component of resistant compression from the substrate and then forms into a somewhat flat arrowhead-like shape. The effective cross-sectional area of the SWCNC tip inside the substrate that the resistant force is acting on therefore is reduced to lower the normal resistant force on the tip. The narrowing effect is more significant for longer SWCNC tips. Two categories of SWCNCs are therefore classified according to whether the SWCNC tip buckles at its part inside or outside the substrate. SWCNCs of the first category defined in this paper are found able to indent into the substrate up to a desired depth. Further analyses demonstrate that a longer SWCNC tip of the first category will encounter smaller repulsive force during the indentation and thus require less net work to accomplish the indentation process. Raising temperatures will weaken the narrowing effect, so an SWCNC tip of the first category also encounters greater repulsive force and larger net work in the indentation process performed at a higher temperature. Notably, a permanent hollow hole with high aspect ratio will be produced on the copper substrate, while copper atoms in close proximity to the hole are only slightly disordered, especially when the indentation is manipulated at a lower temperature by using a longer SWCNC tip. read less NOT USED (high confidence) D. Graves and P. Brault, “Molecular dynamics for low temperature plasma–surface interaction studies,” Journal of Physics D: Applied Physics. 2009. link Times cited: 112 Abstract: The mechanisms of physical and chemical interactions of low … read moreAbstract: The mechanisms of physical and chemical interactions of low temperature plasmas with surfaces can be fruitfully explored using molecular dynamics (MD) simulations. MD simulations follow the detailed motion of sets of interacting atoms through integration of atomic equations of motion, using inter-atomic potentials that can account for bond breaking and formation that result when energetic species from the plasma impact surfaces. This paper summarizes the current status of the technique for various applications of low temperature plasmas to material processing technologies. The method is reviewed, and commonly used inter-atomic potentials are described. Special attention is paid to the use of MD in understanding various representative applications, including tetrahedral amorphous carbon film deposition from energetic carbon ions, the interactions of radical species with amorphous hydrogenated silicon films, silicon nanoparticles in plasmas, and plasma etching. read less NOT USED (high confidence) H. Ohta, T. Nagaoka, K. Eriguchi, and K. Ono, “An Improvement of Stillinger–Weber Interatomic Potential Model for Reactive Ion Etching Simulations,” Japanese Journal of Applied Physics. 2009. link Times cited: 13 Abstract: An approach to improve the interatomic potential model by St… read moreAbstract: An approach to improve the interatomic potential model by Stillinger and Weber (SW), which has been frequently utilized for molecular dynamics simulations of energetic-particle-induced surface reactions, was proposed. It was found that this well-known model for Si/halogen systems had a flaw in its three-body potential form if it was applied to reactive ion etching simulations. The repulsive interaction is overestimated owing to the simple summation form ∑i, j,khjik when a halogen atom is surrounded by more than three atoms. This situation always occurs when a high-energy halogen penetrates a Si lattice and, in this case, the penetration energy into the lattice is overestimated. The test simulations using our model showed that the surface structures predicted were markedly different from those using the original model. This improved model has a profound effect on the prediction of surface structures. read less NOT USED (high confidence) L. Shen and Z. Chen, “A study of mechanical properties of pure and nitrogen-doped ultrananocrystalline diamond films under various loading conditions,” International Journal of Solids and Structures. 2009. link Times cited: 18 NOT USED (high confidence) Q. Meng and Q. Wang, “Molecular dynamics simulation of annihilation of 60° dislocations in Si crystals,” physica status solidi (b). 2009. link Times cited: 1 Abstract: The annihilation of two 60° shuffle dislocations is studied … read moreAbstract: The annihilation of two 60° shuffle dislocations is studied via the molecular dynamics method. The Stillinger–Weber (SW) potential and environment‐dependent interatomic potential (EDIP) are used to describe the atomic interactions. The simulation results show that the complete annihilation of the 60° dislocations takes place only when the two dislocations lie on the same slip plane. The annihilation process may occur without external shear stress when the temperature is higher than a critical value. It is found that the critical temperature increases exponentially as a function of distance between the two dislocations. Also revealed in this simulation is an incomplete annihilation occurring when the distance between the slip planes of the two dislocations is less than about 1 nm. If the distance between the two slip planes is larger than about 1 nm, the dislocations will glide on their own slip planes as if no interaction exists between them. (© 2009 WILEY‐VCH Verlag GmbH & Co. KGaA, Weinheim) read less NOT USED (high confidence) J. Yu, S. Sinnott, and S. Phillpot, “Optimized many body potential for fcc metals,” Philosophical Magazine Letters. 2009. link Times cited: 17 Abstract: A formalism for optimized many body (OMB) potentials to desc… read moreAbstract: A formalism for optimized many body (OMB) potentials to describe the interatomic interactions in fcc metals is described. The OMB approach is based on the Tersoff potential, widely used to describe covalently bonded materials, and is closely related to the charge optimized many body (COMB) potential formalism for oxides. OMB extends to first nearest neighbors only, and employs a third-order Legendre polynomial to distinguish fcc and hcp structures, the strength of which can be adjusted to match the intrinsic stacking fault energy to arbitrary precision. The potential also predicts generalized stacking fault energy curves that are in very close agreement to the values determined from electronic-structure calculations. This potential is thus well-suited to investigating mechanical properties such as plastic deformation at the atomic scale. read less NOT USED (high confidence) B. Ni, T. Watanabe, and S. Phillpot, “Thermal transport in polyethylene and at polyethylene–diamond interfaces investigated using molecular dynamics simulation,” Journal of Physics: Condensed Matter. 2009. link Times cited: 53 Abstract: The thermal conductances across covalently bonded interfaces… read moreAbstract: The thermal conductances across covalently bonded interfaces between oriented single crystal diamond and completely aligned polyethylene chains are determined for the three principal orientations of diamond. The calculated thermal conductances, which range over 690–930 MW m−2 K−1, are consistent with those of other strongly bonded interfaces. These results suggest that the experimental interfacial conductances across hard–soft interfaces can be quite large if the bonding across the interface is strong, a conclusion that could have important implications for thermal management in bioelectromechanical systems and other inorganic–organic structures. The effects of defects and cross-linking on the thermal conductivity of polyethylene are also analyzed. read less NOT USED (high confidence) P. S. Branicio, J. Rino, C. Gan, and H. Tsuzuki, “Interaction potential for indium phosphide: a molecular dynamics and first-principles study of the elastic constants, generalized stacking fault and surface energies,” Journal of Physics: Condensed Matter. 2009. link Times cited: 31 Abstract: Indium phosphide is investigated using molecular dynamics (M… read moreAbstract: Indium phosphide is investigated using molecular dynamics (MD) simulations and density-functional theory calculations. MD simulations use a proposed effective interaction potential for InP fitted to a selected experimental dataset of properties. The potential consists of two- and three-body terms that represent atomic-size effects, charge–charge, charge–dipole and dipole–dipole interactions as well as covalent bond bending and stretching. Predictions are made for the elastic constants as a function of density and temperature, the generalized stacking fault energy and the low-index surface energies. read less NOT USED (high confidence) S. Maruyama, “Molecular Dynamics Method for Micro/Nano Systems.” 2009. link Times cited: 13 Abstract: Molecular dynamics simulations are becoming more important a… read moreAbstract: Molecular dynamics simulations are becoming more important and more practical for microscale and nanoscale heat transfer problems. For example, studies of basic mechanisms of heat transfer such as phase change demand the understanding of microscopic liquid-solid contact phenomena. The efficient heat transfer at a three-phase interface (evaporation and condensation of liquid on a solid surface) becomes the singular problem in the macroscopic treatment. The nucleation theory of liquid droplets in vapor or of vapor bubbles in liquid sometimes needs to take account of nuclei of the size of molecular clusters. The effect of the surfactant on the heat and mass transfer through liquid-vapor interface is also an example of the direct effect of molecular scale phenomena on the macroscopic heat and mass transfer. Even though there has been much effort of extending our macroscopic analysis to extremely microscopic conditions in space (micrometer and nanometer scales), time (microseconds, nanoseconds and picoseconds), and rate (extremely high heat flux), there are certain limitations in the extrapolations. Hence, the bottom-up approach from molecular level is strongly anticipated. On the other hand, recent advances in microscale and nanoscale heat transfer and in nanotechnology require the detailed understandings of phase change and heat and mass transfer in nanometer and micrometer scale regimes. The chemical engineering processes to generate nanoscale structures such as carbon nanotubes or mesoporous silica structures are examples. The wetting of liquid or absorption is also important since the adhesive force is extremely important for micro/nano system and the creation of extremely large surface area is possible with nanoscale structures. The use of molecular dynamics simulations is straightforward for such a nanoscale system. Here, again, it is important to compare such nanoscale phenomena with macroscopic phenomena, because an analogy to the macroscopic system is often an important strategy in understanding a nanoscale phenomenon. Important physics intrinsic to a nanoscale system is usually found through the rational comparison 4 with a macroscopic system. In this chapter, one of the promising numerical techniques, the classical molecular dynamics method, is overviewed with a special emphasis on applications to inter-phase and heat transfer problems. The molecular dynamics methods have long been used and are well developed as a tool in statistical mechanics and physical chemistry [1, 2]. However, it is a new challenge to extend the method to the spatial and temporal scales of macroscopic heat transfer phenomena [3-6]. On the other hand, the thin film technology related … read less NOT USED (high confidence) V. Samvedi and V. Tomar, “Role of heat flow direction, monolayer film thickness, and periodicity in controlling thermal conductivity of a Si–Ge superlattice system,” Journal of Applied Physics. 2009. link Times cited: 30 Abstract: Superlattices are considered one of the most promising mater… read moreAbstract: Superlattices are considered one of the most promising material systems for nanotechnological applications in fields such as high figure of merit (ZT) thermoelectrics, microelectronics, and optoelectronics owing to the possibility that these materials could be tailored to obtain desired thermal properties. Factors that could be adjusted for tailoring the thermal conductivity of the superlattices include the monolayer film thickness, periodicity, heat flow direction, straining, and temperature of operation. In the presented study, nonequilibrium molecular dynamics (NEMD) simulations are performed to obtain an understanding of the effect of such factors on the thermal conductivity of Si–Ge superlattices at three different temperatures (400, 600, and 800 K). The NEMD simulations are performed using Tersoff bond-order potential. The thermal conductivity is found to increase with an increase in the number of periods as well as with the increase in the period thickness. The dependence of thermal conductivity on... read less NOT USED (high confidence) T. Kawamura, D. Hori, Y. Kangawa, K. Kakimoto, M. Yoshimura, and Y. Mori, “Thermal Conductivity of SiC Calculated by Molecular Dynamics,” Japanese Journal of Applied Physics. 2008. link Times cited: 26 Abstract: We calculated the thermal conductivity of SiC by molecular d… read moreAbstract: We calculated the thermal conductivity of SiC by molecular dynamics simulation and investigated the effects of impurities on the thermal conductivity of SiC. We used Tersoff potential to express the structure of a SiC crystal. Thermal conductivity was obtained using Green–Kubo's equation. The results show that the thermal conductivities of perfect 2H-, 3C-, 4H-, and 6H-SiC polytypes were in the range of 260 to 420 W/(m·K) and that the thermal conductivity of 3C-SiC was the largest among the polytypes. The thermal conductivities of 4H-SiC decreased with an increase in impurity concentration above 1.0×1017 to 1.0×1018 1/cm3. read less NOT USED (high confidence) V. Kharlamov, Y. Trushin, E. E. Zhurkin, M. Lubov, and J. Pezoldt, “Study of Si and C adatoms and SiC clusters on the silicon surface by the molecular dynamics method,” Technical Physics. 2008. link Times cited: 7 NOT USED (high confidence) D. Konatham and A. Striolo, “Molecular design of stable graphene nanosheets dispersions.,” Nano letters. 2008. link Times cited: 94 Abstract: Graphene sheets, one-atom-thick layers of carbon atoms, are … read moreAbstract: Graphene sheets, one-atom-thick layers of carbon atoms, are receiving enormous scientific attention because of extraordinary electronic and mechanical properties. These intrinsic properties will lead to innovative nanocomposite materials that could be used to produce novel transistors and thermally conductive polymeric materials. Such applications are currently hindered by the difficulty of producing large quantities of individual graphene sheets and by the propensity of these nanoparticles to agglomerate when dispersed in aqueous and/or organic matrixes. We report here molecular dynamics simulations for pristine and functionalized graphene nanosheets of 54 and 96 carbon atoms each dispersed in liquid organic linear alkanes (oils) at room conditions. For the first time, our results show that, although pristine graphene sheets agglomerate in the oils considered, graphene sheets functionalized at their edges with short branched alkanes yield stable dispersions. We characterized the simulated systems by computing radial distribution functions between the graphene sheets centers of mass, pair potentials of mean force between the graphene sheets in solution, and site-site radial distribution functions. The latter were used to determine the preferential orientation between approaching graphene sheets and the packing of the organic oils on the graphene sheets. Our results are useful not only for designing practical recipes for stabilizing graphene sheets in organic systems, but also for comparing the molecular mechanisms responsible for the graphene sheets aggregation to those that stabilize graphene sheets-containing dispersions, and for controlling the coupling between organic oils and graphene sheets used as fillers. In particular, we demonstrated that excluded-volume effects, generated by the branched architecture of the functional groups grafted on the graphene sheets, are responsible for the stabilization of small graphene sheets in the organic systems considered here. read less NOT USED (high confidence) Z. Wang, X. Zu, F. Gao, and W. J. Weber, “Nanomechanical behavior of single crystalline SiC nanotubes revealed by molecular dynamics simulations,” Journal of Applied Physics. 2008. link Times cited: 7 Abstract: Molecular dynamics simulations with Tersoff potentials were … read moreAbstract: Molecular dynamics simulations with Tersoff potentials were used to study the response of single crystalline SiC nanotubes under tensile, compressive, torsional, combined tension-torsional, and combined compression-torsional strains. The simulation results reveal that the nanotubes deform through bond-stretching and breaking and exhibit brittle properties under uniaxial tensile strain, except for the thinnest nanotube at high temperatures, which fails in a ductile manner. Under uniaxial compressive strain, the SiC nanotubes buckle with two modes, i.e., shell buckling and column buckling, depending on the length of the nanotubes. Under torsional strain, the nanotubes buckle either collapse in the middle region into a dumbbell-like structure for thinner wall thicknesses or fail by bond breakage for the largest wall thickness. Both the tensile failure stress and buckling stress decrease under combined tension-torsional and combined compression-torsional strain, and they decrease with increasing torsional rat... read less NOT USED (high confidence) J. Ramsey, E. Pan, and P. Chung, “Modelling of strain fields in quantum wires with continuum methods and molecular statics,” Journal of Physics: Condensed Matter. 2008. link Times cited: 7 Abstract: The maximum and minimum principal strains of an InAs quantum… read moreAbstract: The maximum and minimum principal strains of an InAs quantum wire (QWR) buried in a GaAs matrix are computed using the boundary element method (BEM), the inclusion method, and molecular statics, and the results from each method are compared with each other. The first two methods are based on continuum mechanics and linear elasticity, while the third is atomistic. The maximum principal strains are largely in agreement among the different methods, especially outside the QWR, though in the centre of the QWR, the discrepancy between the continuum and atomistic methods can be as large as 11.9%. The gradients of the strain tensor are in agreement among the methods. The inclusion method is faster than the BEM, and both continuum methods are an order of magnitude faster than molecular statics. Although the inclusion method, unlike the BEM, ignores the difference in material properties between the QWR and its surrounding matrix, its results are in better agreement with the molecular statics results than the results from the BEM. The rough quantitative and qualitative agreements indicate the utility of classical continuum methods for estimating strain profiles in nanoscale structures. read less NOT USED (high confidence) J. Shimizu, H. Eda, L.-bo Zhou, and H. Okabe, “Molecular Dynamics Simulation of Adhesion Effect on Material Removal and Tool Wear in Diamond Grinding of Silicon Wafer,” Tribology Online. 2008. link Times cited: 19 Abstract: This study aims to clarify the interaction between a silicon… read moreAbstract: This study aims to clarify the interaction between a silicon wafer and individual diamond abrasives in grinding to support the estimation of optimal grinding conditions for minimizing the subsurface damages and maximizing the removal rate. In this paper, the effects of adhesion (or lubrication) between a Si wafer and a diamond abrasive on the material removal and tool wear were analyzed by means of the molecular dynamics simulation. A few simulations were performed with changing the dissociation (cohesion) energy of a Morse potential function between a pair of Si and C atoms to evaluate the influence of adhesion on the material removal process. As a result, a trend similar to the actual diamond grinding process of silicon wafer was confirmed, which suggested that the reduction in adhesion (or proper lubrication) is effective for the reduction in subsurface damages, grinding forces, grinding temperature and tool wear, but may lead to reduction in the material removal rate as well. read less NOT USED (high confidence) Y. Lin, P.-F. Yang, S. Jian, Y. Lai, and T.-C. Chen, “Experimental and Molecular Dynamics Investigations of Nanoindentation-induced Phase Transformations in Monocrystalline Silicon,” 2008 3rd International Microsystems, Packaging, Assembly & Circuits Technology Conference. 2008. link Times cited: 0 Abstract: This work presents experimental and molecular dynamics appro… read moreAbstract: This work presents experimental and molecular dynamics approaches towards deformation and phase transformation mechanisms of monocrystalline Si(100) subjected to nanoindentation. The nanoindentation experiment was conducted with a Berkovich indenter. Following the analysis using cross-sectional transmission electron microscopy with the samples prepared by focused ion beam milling, upon pressure release, metastable Si-III and Si-XII phases were identified inside the indentation-induced deformed region beneath the indent. We also demonstrated phase distributions during loading and unloading stages of spherical and Berkovich nanoindentations through molecular dynamics simulations. By searching the presence of the fifth neighboring atom within a non-bonding length, Si-III and Si-XII have been successfully distinguished from Si-I. Crystallinity of this mixed-phase was further identified by radial distribution functions. read less NOT USED (high confidence) T. Hawa and M. Zachariah, “Understanding the Effect of Hydrogen Surface Passivation and Etching on the Shape of Silicon Nanocrystals,” Journal of Physical Chemistry C. 2008. link Times cited: 15 Abstract: One of the significant challenges in the use of nanocrystals… read moreAbstract: One of the significant challenges in the use of nanocrystals, is the control of crystal shape when grown from the gas-phase. Recently, the Kortshagen group has succeeded in generating cubic Si nanocrystals in a nonequilibrium plasma. In this paper we consider the energetics of various shaped Si nanocrystals, and the role that hydrogen surface termination plays. We consider cube, truncated octahedron, icosahedron, and spherical shapes for both bare and hydrogen coated silicon nanocrystals for sizes between 2 and 10 nm. From our molecular dynamics (MD) simulations, show that for bare Si crystals, icosahedron crystals are the most energetically stable, and cubic the least. On the other hand, when hydrogenated, the cubic structure comes about because 1) the cubic structure is energetically favored when hydrogen terminated and 2) the plasma that operates with hydrogen also provides a steady source of hydrogen atoms for etching. read less NOT USED (high confidence) T. Lu, E. Goldfield, and S. Gray, “Classical Trajectory Studies of the D + H2 → HD + H Reaction Confined in Carbon Nanotubes: Parallel Trajectories,” Journal of Physical Chemistry C. 2008. link Times cited: 7 Abstract: We use full-dimensional classical trajectories to study how … read moreAbstract: We use full-dimensional classical trajectories to study how reaction probabilities for the D + H2 → DH + H reaction are altered when the system is confined to move within various-sized carbon nanotubes (CNTs). This study focuses on D atoms initially moving parallel to the long axis of the tube. We compare our results with standard gas-phase reaction probabilities. Enhanced reaction probabilities are found for the smaller diameter CNTs, and slight quenching is found for the largest diameter CNT studied. These results are also consistent with those of a reduced-dimensional, quantum study. The origins of the confinement effects are discussed in terms of how the CNT modifies the H2 reactant state and of the modified forces experienced by the incoming D atom. read less NOT USED (high confidence) G. Nikishkov and Y. Nishidate, “Continuum and Atomic-Scale Modeling of Self-Positioning Microstructures and Nanostructures.” 2008. link Times cited: 0 Abstract: This article presents investigations of self-positioning mic… read moreAbstract: This article presents investigations of self-positioning microstructures and nanostructures by analytical techniques, finite element analysis and atomic-scale modeling. Closed-form solutions for curvature radius of self-positioning hinge structures are obtained for plane strain and generalized plane strain deformation. The finite element method is used for predicting hinge curvature radius for self-positioning structures of variable width. Anisotropic finite element analysis of self-positioning structures with different orientation of material axes is performed to estimate the effect of material anisotropy on the self-positioning. An algorithm of the atomic-scale finite element method (AFEM) based on the Tersoff interatomic potential has been developed. The AFEM is applied to modeling of GaAs and InAs bi-layer self-positioning nanostructures. Nanohinge curvature radius dependence on the structure thickness and the material orientation angle is investigated. It was found that atomic-scale effects play considerable role for nanostructures of small thickness less than 40 nm. read less NOT USED (high confidence) C. Sanz-Navarro et al., “Molecular Dynamics Simulations of Carbon-Supported Ni Clusters Using the Reax Reactive Force Field,” Journal of Physical Chemistry C. 2008. link Times cited: 30 Abstract: Molecular dynamics simulations have been performed using a R… read moreAbstract: Molecular dynamics simulations have been performed using a Reax force field for C/H/Ni systems to study the structural changes of an Ni_(100) cluster adsorbed on a carbon platelet. Three different edges of a carbon platelet are considered. We find a complete restructuring of the initial structure of the Ni_(100) clusters adsorbed on the armchair and zigzag edges. Nonetheless, the mean Ni−Ni bond length hardly changes. Several preferential sites on each of the graphite edges are identified. Diffusion of the entire cluster is found both for adsorption on the basal plane and for binding to a hydrogen terminated graphite edge. read less NOT USED (high confidence) J. Harrison, J. Schall, M. T. Knippenberg, G. Gao, and P. Mikulski, “Elucidating atomic-scale friction using molecular dynamics and specialized analysis techniques,” Journal of Physics: Condensed Matter. 2008. link Times cited: 51 Abstract: Because all quantities associated with a given atom are know… read moreAbstract: Because all quantities associated with a given atom are known as a function of time, molecular dynamics simulations can provide unparalleled insight into dynamic processes. Many quantities calculated from simulations can be directly compared to experimental values, while others provide information not available from experiment. For example, the tilt and methyl angles of chains within a self-assembled monolayer and the amount of hydrogen in a diamond-like carbon (DLC) film are measurable in an experiment. In contrast, the atomic contact force on a single substrate atom, i.e., the force on that atom due to the tip atoms only, and the changes in hybridization of a carbon atom within a DLC film during sliding are not quantities that are currently obtainable from experiments. Herein, the computation of many quantities, including the ones discussed above, and the unique insights that they provided into compression, friction, and wear are discussed. read less NOT USED (high confidence) Z. Wang, X. Zu, Z. Li, and F. Gao, “Amorphous layer coating induced brittle to ductile transition in single crystalline SiC nanowires: an atomistic simulation,” Journal of Physics D: Applied Physics. 2008. link Times cited: 14 Abstract: Molecular dynamics simulations with Tersoff potentials were … read moreAbstract: Molecular dynamics simulations with Tersoff potentials were used to study the response of SiC nanowires with and without amorphous coating to a tensile strain along the axial direction. The uncoated nanowires show brittle properties and fail through bond breaking. Although the amorphous coating leads to a decrease in the Young's modulus of nanowires, yet it also leads to the appearance of plastic deformation under axial strain. These results provide an effective way to modify the brittle properties of some other semiconductor nanowires. read less NOT USED (high confidence) J. Zimmerman, R. Jones, and J. Templeton, “A material frame approach for evaluating continuum variables in atomistic simulations,” J. Comput. Phys. 2008. link Times cited: 71 NOT USED (high confidence) M. Malshe, R. Narulkar, L. Raff, M. Hagan, S. Bukkapatnam, and R. Komanduri, “Parametrization of analytic interatomic potential functions using neural networks.,” The Journal of chemical physics. 2008. link Times cited: 29 Abstract: A generalized method that permits the parameters of an arbit… read moreAbstract: A generalized method that permits the parameters of an arbitrary empirical potential to be efficiently and accurately fitted to a database is presented. The method permits the values of a subset of the potential parameters to be considered as general functions of the internal coordinates that define the instantaneous configuration of the system. The parameters in this subset are computed by a generalized neural network (NN) with one or more hidden layers and an input vector with at least 3n-6 elements, where n is the number of atoms in the system. The Levenberg-Marquardt algorithm is employed to efficiently affect the optimization of the weights and biases of the NN as well as all other potential parameters being treated as constants rather than as functions of the input coordinates. In order to effect this minimization, the usual Jacobian employed in NN operations is modified to include the Jacobian of the computed errors with respect to the parameters of the potential function. The total Jacobian employed in each epoch of minimization is the concatenation of two Jacobians, one containing derivatives of the errors with respect to the weights and biases of the network, and the other with respect to the constant parameters of the potential function. The method provides three principal advantages. First, it obviates the problem of selecting the form of the functional dependence of the parameters upon the system's coordinates by employing a NN. If this network contains a sufficient number of neurons, it will automatically find something close to the best functional form. This is the case since Hornik et al., [Neural Networks 2, 359 (1989)] have shown that two-layer NNs with sigmoid transfer functions in the first hidden layer and linear functions in the output layer are universal approximators for analytic functions. Second, the entire fitting procedure is automated so that excellent fits are obtained rapidly with little human effort. Third, the method provides a procedure to avoid local minima in the multidimensional parameter hyperspace. As an illustrative example, the general method has been applied to the specific case of fitting the ab initio energies of Si(5) clusters that are observed in a molecular dynamics (MD) simulation of the machining of a silicon workpiece. The energies of the Si(5) configurations obtained in the MD calculations are computed using the B3LYP procedure with a 6-31G(**) basis set. The final ab initio database, which comprises the density functional theory energies of 10 202 Si(5) clusters, is fitted to an empirical Tersoff potential containing nine adjustable parameters, two of which are allowed to be the functions of the Si(5) configuration. The fitting error averaged over all 10 202 points is 0.0148 eV (1.43 kJ mol(-1)). This result is comparable to the accuracy achieved by more general fitting methods that do not rely on an assumed functional form for the potential surface. read less NOT USED (high confidence) H. S. Park and P. Klein, “A Surface Cauchy-Born model for silicon nanostructures,” Computer Methods in Applied Mechanics and Engineering. 2008. link Times cited: 81 NOT USED (high confidence) B. Garrison and Z. Postawa, “Computational view of surface based organic mass spectrometry.,” Mass spectrometry reviews. 2008. link Times cited: 125 Abstract: Surface based mass spectrometric approaches fill an importan… read moreAbstract: Surface based mass spectrometric approaches fill an important niche in the mass analysis portfolio of tools. The particular niche depends on both the underlying physics and chemistry of molecule ejection as well as experimental characteristics. In this article, we use molecular dynamics computer simulations to elucidate the fundamental processes giving rise to ejection of organic molecules in atomic and cluster secondary ion mass spectrometry (SIMS), massive cluster impact (MCI) mass spectrometry, and matrix-assisted laser desorption ionization (MALDI) mass spectrometry. This review is aimed at graduate students and experimental researchers. read less NOT USED (high confidence) H. S. Park, “Surface stress effects on the resonant properties of silicon nanowires,” Journal of Applied Physics. 2008. link Times cited: 78 Abstract: The purpose of the present work is to quantify the coupled e… read moreAbstract: The purpose of the present work is to quantify the coupled effects of surface stresses and boundary conditions on the resonant properties of silicon nanowires. We accomplish this by using the surface Cauchy–Born model, which is a nonlinear, finite deformation continuum mechanics model that enables the determination of the nanowire resonant frequencies including surface stress effects through solution of a standard finite element eigenvalue problem. By calculating the resonant frequencies of both fixed/fixed and fixed/free ⟨100⟩ silicon nanowires with unreconstructed {100} surfaces using two formulations, one that accounts for surface stresses and one that does not, it is quantified how surface stresses cause variations in nanowire resonant frequencies from those expected from continuum beam theory. We find that surface stresses significantly reduce the resonant frequencies of fixed/fixed nanowires as compared to continuum beam theory predictions, while small increases in resonant frequency with respect to... read less NOT USED (high confidence) T. Hammerschmidt, P. Kratzer, and M. Scheffler, “Analytic many-body potential for InAs/GaAs surfaces and nanostructures: Formation energy of InAs quantum dots,” Physical Review B. 2008. link Times cited: 46 Abstract: A parametrization of the Abell‐Tersoff potential for In, Ga,… read moreAbstract: A parametrization of the Abell‐Tersoff potential for In, Ga, As, InAs, and GaAs is presented by using both experimental data and results from density-functional calculations as input. This parametrization is optimized for the description of structural and elastic properties of bulk In, Ga, As, InAs, and GaAs, as well as for the structure and energy of several reconstructed low-index GaAs and InAs surfaces. We demonstrate the transferability to GaAs and InAs high-index surfaces and compare the results to those obtained with previously published parametrizations. Furthermore, we demonstrate the applicability to epitaxial InAs/GaAs films by comparing the Poisson ratio and elastic energy for biaxial strain, as obtained numerically with our potential and analytically from continuum-elasticity theory. Limitations for the description of point defects and surface diffusion are pointed out. This parametrization enables us to perform atomically detailed studies of InAs/GaAs heterostructures. The formation energy of InAs quantum dots on GaAs001 obtained from our atomistic approach is in good agreement with previous results from a hybrid approach. read less NOT USED (high confidence) J. Kioseoglou, P. Komninou, and T. Karakostas, “Interatomic potential calculations of III(Al, In)–N planar defects with a III‐species environment approach,” physica status solidi (b). 2008. link Times cited: 22 Abstract: III–N compound semiconductors are nowadays widely used in el… read moreAbstract: III–N compound semiconductors are nowadays widely used in electronic device technology. Due to the complexity of their structures planar and linear defects may have various atomic configurations. Since in the wurtzite structure of AlN and InN the second‐neighbor distance is very close to the stable “metallic” Al–Al and In–In distances respectively, a III‐species environment approach based on a Tersoff empirical bond order interatomic potential is developed in which the cut‐off distance for Al–Al and In–In interactions is tuned. In particular, the work is focused on two issues: the development of an approach for the calculation of defected structures in III‐nitrides and the application of this method on a series of planar defects in wurtzite structure. Various structural and energy‐related conclusions are drawn that are attributed to the complexity of the III–III metal type and N–N interactions in connection with the difference of the lattice parameters and the elastic constants. Molecular dynamic simulations are led to the conclusion that structural transformations may also occur. The Austerman–Gehman and Holt models for the inversion domain boundary (IDB) on the (10$ \bar 1 $0) plane are higher in energy than the IDB* model of Northrup, Neugebauer, and Romano. The model of Blank et al. for the translation domain boundary (TDB) on the {1$ \bar 2 $10} plane is unstable with respect to Drum's model. The Austerman model for the IDB on the {1$ \bar 2 $10} plane is unstable with respect to the IDB* model appropriate for this plane. The Austerman {10$ \bar 1 $0} IDB model is recognized as a strong candidate, among the IDB atomic configurations. Moreover, models for IDBs on {10$ \bar 1 $0} planes in which the boundary plane intersects two bonds (type‐2 models) are less stable than models in which the boundary plane intersects one bond (type‐1 models), in all cases considered. It is confirmed that the III‐species environment approach describes the “wrong”‐bonded defect local configuration structures more realistically with respect to the standard approach. (© 2008 WILEY‐VCH Verlag GmbH & Co. KGaA, Weinheim) read less NOT USED (high confidence) Y. H. Lin and T.-C. Chen, “A molecular dynamics study of phase transformations in mono-crystalline Si under nanoindentation,” Applied Physics A. 2008. link Times cited: 37 NOT USED (high confidence) T.-Y. Zhang, M. Luo, and W. Chan, “Size-dependent surface stress, surface stiffness, and Young’s modulus of hexagonal prism [111] β-SiC nanowires,” Journal of Applied Physics. 2008. link Times cited: 96 Abstract: The present work studies the size-dependent surface stress, … read moreAbstract: The present work studies the size-dependent surface stress, surface stiffness, and Young’s modulus of a prism crystalline nanowire, which is theoretically treated to be composed of a hypothetical nanowire phase, a true two-dimensional geometric surface phase, and a true one-dimensional geometric edge phase. The hypothetical nanowire phase could be elastically deformed due to relaxation of a free-standing nanowire, without any applied load, with respect to its bulk counterpart. The initially deformed nanowire phase is taken as reference in the present work in the determination of excess surface and edge energies. The theoretical results indicate that the edge phase causes the nominal specific surface energy, surface stress, and surface stiffness to be size dependent, and the surface phase and the edge phase make the nominal Young’s modulus size dependent. The edge and surface effects are more significant as the cross-sectional area of a nanowire becomes smaller. Molecular dynamics simulations on hexagonal ... read less NOT USED (high confidence) A. Galashev, “Thermal instability of silicon fullerenes stabilized with hydrogen: Computer simulation,” Semiconductors. 2008. link Times cited: 4 NOT USED (high confidence) A. Galashev and I. A. Izmodenov, “Computer investigation of the structure of Si73 clusters surrounded by hydrogen,” Glass Physics and Chemistry. 2008. link Times cited: 5 NOT USED (high confidence) F. Gou, A. Kleyn, and M. Gleeson, “The application of molecular dynamics to the study of plasma–surface interactions: CF x with silicon,” International Reviews in Physical Chemistry. 2008. link Times cited: 24 Abstract: In this paper, we provide an overview of the use of molecula… read moreAbstract: In this paper, we provide an overview of the use of molecular dynamics for simulations involving energetic particles (Ar, F, and CF x ) interacting with silicon surfaces. The groups (including our own) that have performed this work are seeking to advance the fundamental understanding of plasma interactions at surfaces. Although this paper restricts itself largely to the systems bracketed above, the approach and general mechanisms involved are applicable to a much wider range of systems. Proper description of plasma-related systems generally requires a large number of atoms in order to correctly characterize the interactions. Consequently, the bulk of the present work, and the main focus of the text, is based on classical molecular dynamics. In MD simulations, one of the most critical considerations is the selection of the interatomic potential. For simulations involving silicon etching, the choice is typically made between the Stillinger–Weber and the Tersoff–Brenner potentials. An outline of the two potentials is given, including efforts that have been made to improve and optimize the potentials and their parameters. Subsequently, we focus on some of the practical details involved in establishing the simulation process and outline how various parameters (e.g. heat bath, relaxation time and cell size) influence the simulation results. These sections deal with the influences of the heat bath (application time, rising time), the time-step and total integration time of molecular trajectories, the relaxation of the sample (during and post-etching) and the sample size. The approach is essentially pedagogical in nature, and may be of interest to those less familiar with the techniques. To illustrate the type of results that can be produced we present a case study for 100 eV interacting with a Si(100)-2 × 1 surface at different sample temperatures (100–800 K). The simulations reveal details of the change in etch rate, the F-turnover and the standing coverage of functional groups as a function of the temperature. Our primary interest is in studies with relevance for plasma–surface interactions. We discuss the general mechanisms that are most important in plasma–surface interactions and give an overview of some of the wide range of results that have been produced for various systems. The results presented illustrate that careful consideration must be given to the precise configuration of the plasma system. Numerous factors, including the chemical species, the energy and chemical mix of the incident particles and the surface composition and structure can play a crucial role in determining the net outcome of the interaction. read less NOT USED (high confidence) T. Takeshita, “Analysis and location of antisite defects in polycrystalline SiC,” Journal of Applied Physics. 2008. link Times cited: 0 Abstract: Molecular dynamics simulations based on the empirical Tersof… read moreAbstract: Molecular dynamics simulations based on the empirical Tersoff potential were performed to examine the structure of the polycrystalline SiC containing antisite defects. To locate the defects, two types of crystallites were used as a model of the grain in polycrystalline SiC: the model structure I contains the defects located randomly in the crystallite; the structure II contains the defects located only on the surface of the crystallite. As a result of calculating the lattice parameters, the strain in structure I is one to two orders larger than that in structure II. The comparison between the simulation results with experimental observations indicates that the carbon antisite defects are easily incorporated into the crystallites in C-rich polycrystalline SiC, whereas the silicon antisites are difficult to locate in the crystallites in Si-rich polycrystalline SiC. read less NOT USED (high confidence) J. Schall, G. Gao, and J. Harrison, “Elastic constants of silicon materials calculated as a function of temperature using a parametrization of the second-generation reactive empirical bond-order potential,” Physical Review B. 2008. link Times cited: 48 Abstract: A parametrization for silicon is presented that is based on … read moreAbstract: A parametrization for silicon is presented that is based on the second-generation reactive empirical bondorder REBO formalism Brenner, Shenderova, Harrison, Stuart, Ni, and Sinnott J. Phys.: Condens. Matter 14, 783 2002 . Because it shares the same analytic form as Brenner’s second-generation REBO, this new potential is a step toward a single potential that can model many atom systems that contain C, Si, and H, where bond breaking and bond making are important. The widespread use of Brenner’s REBO potential, its ability to model both zero-Kelvin elastic constants of diamond and the temperature dependence of the elastic constants, and the existence of parameters for many atom types were the motivating factors for obtaining this parametrization for Si. While Si-C-H classical bond-order potentials do exist, they are based on Brenner’s original formalism. This new parametrization is validated by examining the structure and stability of a large number of crystalline silicon structures, by examining the relaxation energies of point defects, the energies of silicon surfaces, the effects of adatoms on surface energies, and the structures of both liquid silicon and amorphous silicon. Finally, the elastic constants of diamond-cubic and amorphous silicon between 0 and 1100 K are calculated with this new parametrization and compared to values calculated using a previously published potential. read less NOT USED (high confidence) J. Kioseoglou, E. Kalessaki, G. Dimitrakopulos, P. Komninou, and T. Karakostas, “Study of InN/GaN interfaces using molecular dynamics,” Journal of Materials Science. 2008. link Times cited: 16 NOT USED (high confidence) J.-H. Lee, J. Grossman, J. Reed, and G. Galli, “Thermoelectric properties of nanoporous Si,” Bulletin of the American Physical Society. 2008. link Times cited: 38 Abstract: We computed thermoelectric properties of nanoporous Ge (np-G… read moreAbstract: We computed thermoelectric properties of nanoporous Ge (np-Ge) with aligned pores along the [001] direction through a combined classical molecular dynamics and first-principles electronic structure approach. A significant reduction in the lattice thermal conductivity of np-Ge leads to a 30-fold increase in the thermoelectric figure-of-merit (ZT) compared to that of bulk. Detailed comparisons with the recently proposed np-Si show that although the maximum ZT (ZTmax) of Ge is nine times larger than that of Si in the bulk phase, ZTmax of np-Ge is twice as large as that of np-Si due to the similarity in lattice thermal conductivity of the two np systems. Moreover, ZTmax is found to occur at a carrier concentration two orders of magnitude lower than that for with np-Si due to the dissimilarities in their electronic structure. read less NOT USED (high confidence) N. Papanikolaou, “Lattice thermal conductivity of SiC nanowires,” Journal of Physics: Condensed Matter. 2008. link Times cited: 53 Abstract: We present non-equilibrium classical molecular dynamics simu… read moreAbstract: We present non-equilibrium classical molecular dynamics simulations for the lattice thermal transport of SiC nanowires and bulk β-SiC. The thermal conductivity of the nanowires is strongly reduced compared to the SiC bulk value. In our approach only the phonon contribution to the heat flow is considered, neglecting any electronic components. We investigate the dependence of the thermal conductivity on the wire cross section and consider the influence of different wire surfaces on the thermal transport. read less NOT USED (high confidence) F. Mota, E. F. A. Júnior, and C. D. Castilho, “How can encapsulated C60 fullerenes escape from a carbon nanotube?: A molecular dynamics simulation answer,” Brazilian Journal of Physics. 2008. link Times cited: 3 Abstract: This work aim is to determine how a C60 fullerene, encapsula… read moreAbstract: This work aim is to determine how a C60 fullerene, encapsulated into a (10,10) carbon nanotube, can be ballistically expelled from it by using a colliding capsule. Initially, the C60 fullerene is positioned at rest inside the nanotube. The capsule, also starting from rest but outside of the nanotube, is put in a position such that it can be trapped towards the interior of the nanotube by attraction forces between their atoms. The energy gain associated to the capsule penetration is kinetic energy, giving rise to a high velocity for it. When the capsule reaches the C60 fullerene, it transfers energy to it in an amount that enables the fullerene to escape from the nanotube. The mechanical behavior was simulated by classical molecular dynamics. The intermolecular interactions are described by a van der Waals potential while the intramolecular interactions are described by an empirical Tersoff-Brenner potential for the carbon system. read less NOT USED (high confidence) H. Y. Song and X. Zha, “Molecular dynamics study of mechanical properties of carbon nanotube-embedded gold composites,” Physica B-condensed Matter. 2008. link Times cited: 23 NOT USED (high confidence) Y. Nishidate and G. Nikishkov, “Atomic-scale modeling of self-positioning nanostructures,” Cmes-computer Modeling in Engineering & Sciences. 2008. link Times cited: 6 Abstract: Atomic-scale finite element procedure for modeling of self-p… read moreAbstract: Atomic-scale finite element procedure for modeling of self-positioning nanostructures is devel- oped. Our variant of the atomic-scale finite element method is based on a meshless approach and on the Ter- soff interatomic potential function. The developed al- gorithm is used for determination of equilibrium con- figuration of atoms after nanostructure self-positioning. Dependency of the curvature radius of nanostructures on their thickness is investigated. It is found that for thin nanostructures the curvature radius is considerably smaller than predicted by continuum mechanics equa- tions. Curvature radius variation with varying orienta- tion of crystallographic axes is also modeled and results are compared to finite element continuum anisotropic so- lution. keyword: Nanostructure, Self-positioning, Atomic- scale finite element method. read less NOT USED (high confidence) A. Liu and S. Stuart, “Empirical bond‐order potential for hydrocarbons: Adaptive treatment of van der Waals interactions,” Journal of Computational Chemistry. 2008. link Times cited: 31 Abstract: Bond‐order potentials provide a powerful class of models for… read moreAbstract: Bond‐order potentials provide a powerful class of models for simulating chemically reactive systems with classical potentials. In these models, the covalent bonding interactions adapt to the environment, allowing bond strength to change in response to local chemical changes. However, the non‐bonded interactions should also adapt in response to chemical changes, an effect which is neglected in current bond‐order potentials. Here the AIREBO potential is extended to include adaptive Lennard‐Jones terms, allowing the van der Waals interactions to vary adaptively with the chemical environment. The resulting potential energy surface and its gradient remain continuous, allowing it to be used for dynamics simulations. This new potential is parameterized for hydrocarbons, and is fit to the energetics and densities of a variety of condensed phase molecular hydrocarbons. The resulting model is more accurate for modeling aromatic and other unsaturated hydrocarbon species, for which the original AIREBO potential had some deficiencies. Testing on compounds not used in the fitting procedure shows that the new model performs substantially better in predicting heats of vaporization and pressures (or densities) of condensed‐phase molecular hydrocarbons. © 2007 Wiley Periodicals, Inc. J Comput Chem, 2008 read less NOT USED (high confidence) D.-B. Zhang, M. Hua, and T. Dumitricǎ, “Stability of polycrystalline and wurtzite Si nanowires via symmetry-adapted tight-binding objective molecular dynamics.,” The Journal of chemical physics. 2008. link Times cited: 45 Abstract: The stability of the most promising ground state candidate S… read moreAbstract: The stability of the most promising ground state candidate Si nanowires with less than 10 nm in diameter is comparatively studied with objective molecular dynamics coupled with nonorthogonal tight-binding and classical potential models. The computationally expensive tight-binding treatment becomes tractable due to the substantial simplifications introduced by the presented symmetry-adapted scheme. It indicates that the achiral polycrystalline of fivefold symmetry and the wurtzite wires of threefold symmetry are the most favorable quasi-one-dimensional Si arrangements. Quantitative differences with the classical model description are noted over the whole diameter range. Using a Wulff energy decomposition approach it is revealed that these differences are caused by the inability of the classical potential to accurately describe the interaction of Si atoms on surfaces and strained morphologies. read less NOT USED (high confidence) Y. Ma and S. Garofalini, “Molecular dynamics simulations of beta-SiC using both fixed charge and variable charge models.,” The Journal of chemical physics. 2008. link Times cited: 6 Abstract: In this paper, molecular dynamics simulations have been perf… read moreAbstract: In this paper, molecular dynamics simulations have been performed using both fixed charge and variable charge models. In the fixed charge model, partial charges are introduced to Si and C atoms to model the charge transfer observed in first principles studies. The calculated phonon dispersions, elastic constants, and lattice constants are in good accuracy. Variable charge model is also used to obtain geometry and connectivity dependent atomic charges. Our results show that although the variable charge model may not be advantageous in the study of ordered structures, it is important in describing structural disorders such as vacancies. read less NOT USED (high confidence) Y. H. Lin, S. Jian, Y. Lai, and P.-F. Yang, “Molecular Dynamics Simulation of Nanoindentation-induced Mechanical Deformation and Phase Transformation in Monocrystalline Silicon,” Nanoscale Research Letters. 2008. link Times cited: 42 NOT USED (high confidence) E. Oh and J. C. Slattery, “Nanoscale thermodynamics of multicomponent, elastic, crystalline solids: diamond, silicon, and silicon carbide,” Philosophical Magazine. 2008. link Times cited: 9 Abstract: This paper extends the thermodynamic behaviour of two-dimens… read moreAbstract: This paper extends the thermodynamic behaviour of two-dimensional and simple three-dimensional crystalline solids developed by Oh et al. and Slattery and Lagoudas to more complex, multicomponent, three-dimensional, elastic, crystalline solids. The analysis recognizes that the Helmholtz free energy is an explicit function of the lattice vectors defining the crystalline structure. From this theory, we obtain the stress-deformation behaviour and the elastic properties of diamond, silicon, and silicon carbide, which are face-centred, cubic, crystal structure. These are compared with available experimental values. read less NOT USED (high confidence) Q. Tang, “Md Simulation Of Dislocation Mobility During Cutting With Diamond Tip On Silicon,” Materials Science in Semiconductor Processing. 2007. link Times cited: 14 NOT USED (high confidence) V. Tewary and B. Yang, “Multiscale modeling of point defects in strained silicon,” 2007 International Workshop on Physics of Semiconductor Devices. 2007. link Times cited: 0 Abstract: A multiscale Green's function method is described for m… read moreAbstract: A multiscale Green's function method is described for modeling impurities in strained silicon. The model seamlessly links the length scales from atomistic to macro. The model accounts for the discrete lattice effects, elastic anisotropy, nonlinear effects, and the presence of point defects as well as surfaces and interfaces in the solid. An effective force, called the Kanzaki force, is defined, which is a characteristic of the defect configuration. This force can be calculated and stored for later use, which makes the method numerically convenient for subsequent calculations. The Kanzaki force is used to calculate the dipole tensor that is a measure of the strength of the defects and can be directly used to calculate the strains from the familiar continuum Green's function. Numerical results are presented for the lattice distortion and the dipole tensors for various point defects (vacancy and substitutional germanium and carbon impurities) in strained silicon. Calculated values of elastic constants are reported for strained silicon. read less NOT USED (high confidence) A. Schliwa, M. Winkelnkemper, and D. Bimberg, “Impact of size, shape, and composition on piezoelectric effects and electronic properties of In ( Ga ) As ∕ Ga As quantum dots,” Physical Review B. 2007. link Times cited: 206 Abstract: The strain fields in and around self-organized $\mathrm{In}(… read moreAbstract: The strain fields in and around self-organized $\mathrm{In}(\mathrm{Ga})\mathrm{As}∕\mathrm{Ga}\mathrm{As}$ quantum dots (QDs) sensitively depend on QD geometry, average InGaAs composition, and the $\mathrm{In}∕\mathrm{Ga}$ distribution profile. Piezoelectric fields of varying sizes are one result of these strain fields. We study systematically a large variety of realistic QD geometries and composition profiles, and calculate the linear and quadratic parts of the piezoelectric field. The balance of the two orders depends strongly on the QD shape and composition. For pyramidal InAs QDs with sharp interfaces, a strong dominance of the second-order fields is found. Upon annealing, the first-order terms become dominant, resulting in a reordering of the electron $p$ and $d$ states and a reorientation of the hole wave functions. read less NOT USED (high confidence) J. Hsieh, L. S. Huang, C. Chen, H. Lo, and C. Hwang, “Molecular dynamics simulation for nanoscale deep indentation of a copper substrate by single-walled carbon nanotube tips,” Nanotechnology. 2007. link Times cited: 3 Abstract: Deep nanoindentation of a copper substrate by single-walled … read moreAbstract: Deep nanoindentation of a copper substrate by single-walled carbon nanotubes (SWCNTs) has been analyzed using molecular dynamics simulations. Three categories of SWCNTs and their relationship with temperature and nanotube length have been extensively investigated. The results of this comprehensive quantitative analysis for deep indentation demonstrate that only SWCNTs with relatively short lengths can indent into a substrate up to a desired depth without buckling. Most notably, a permanent hollow hole with a high aspect ratio will be produced on the copper substrate, while copper atoms in close proximity to the hole are only slightly disordered. read less NOT USED (high confidence) Y. Nishidate and G. Nikishkov, “Effect of thickness on the self-positioning of nanostructures,” Journal of Applied Physics. 2007. link Times cited: 8 Abstract: Atomic-scale modeling of self-positioning GaAs–InAs nanostru… read moreAbstract: Atomic-scale modeling of self-positioning GaAs–InAs nanostructures is performed. Curvature radius values obtained by the atomic-scale finite element method are compared with those obtained by a continuum mechanics solution under plane strain conditions. Atomic-scale modeling and continuum mechanics solution predict the same curvature radius for structures with large thickness. However, atomic-scale modeling shows significant decrease of the curvature radius for structures with thickness less than 40nm. read less NOT USED (high confidence) C. Ciobanu, F. Chuang, and D. Lytle, “On the structure of the Si‘103… surface,” Applied Physics Letters. 2007. link Times cited: 8 Abstract: Although (103) is a stable nominal orientation for both sili… read moreAbstract: Although (103) is a stable nominal orientation for both silicon and germanium, experimental observations revealed that in the case of silicon, this surface remains disordered at the atomic scale even after careful annealing. We report here a set of low-energy reconstruction models corresponding to 1×2, 2×2, and 1×4 periodicities, and propose that the observed disorder stems from the presence of several coexisting reconstructions with different morphologies and nearly equal surface energies. The reconstructions found also suggest that the models previously reported in the literature for the (103) orientation have very high surface energies and are thus unlikely to be experimentally observed. read less NOT USED (high confidence) J. A. Pascual-Gutiérrez, J. Murthy, and R. Viskanta, “Limits of size confinement in silicon thin films and wires,” Journal of Applied Physics. 2007. link Times cited: 15 Abstract: Physically confined structures such as thin films and nanowi… read moreAbstract: Physically confined structures such as thin films and nanowires are becoming increasingly important in nanoscale energy conversion and nanoelectronics. The main focus of this work is to determine the size threshold below which the volumetric specific heat and group velocity of one- and two-dimensionally confined silicon nanostructures begin to differ significantly with respect to bulk silicon and to quantify these changes. The dynamical matrix approach subject to free-standing boundary conditions is employed to determine the phonon normal modes of vibration of the structures. The environment-dependent interatomic potential under the harmonic approximation is used to model interatomic forces. We find that above 10nm thickness, silicon [111]-films yield specific heats and group velocities which exhibit size-invariant behavior; for [111]-silicon nanowires, the limit is approximately 5nm. Moreover, we show that computed phonon group velocities using the dynamical matrix approach are affected by geometry-speci... read less NOT USED (high confidence) T. Hawa and M. Zachariah, “Molecular dynamics simulation and continuum modeling of straight-chain aggregate sintering : Development of a phenomenological scaling law,” Physical Review B. 2007. link Times cited: 27 Abstract: Atomistic molecular dynamics simulation and a simple continu… read moreAbstract: Atomistic molecular dynamics simulation and a simple continuum viscous flow model are employed to investigate the sintering of straight-chain nanoparticle aggregates. The results are used to develop a phenomenological sintering scaling law. The chain aggregates investigated consist of up to 80 primary particles of silicon, with primary particles of 2.5–7 nm in diameter. We found that sintering of chain aggregates consists of three steps. In step a , reaction between particles to minimize surface defects and development of a cylindrical like shape comprised an induction period. Step b consisted of contraction of the cylinder, which actually consisted of two contraction stages. The first stage was the local contraction stage where sintering occurs only at the ends of the particle chain, and the second stage involved the global contraction. The last step was the nominal sintering process from an oval to spherical shape. As expected, sintering time increases with increasing chain length, with the exception that very long chains fragmented. The sintering times normalized by the primary particle diameter showed a universal relationship which only depends on chain length. These results were found to be consistent with a mathematical model we develop based on continuum viscous flow. The model was able to predict the sintering time in excellent agreement with results obtained from molecular dynamics simulation for any chain length and any primary particle size for straight nanoparticle chain aggregates. The results for sintering times for aggregate chains could be summarized with a power law modification of the Frenkel viscous flow equation, to include a dependence on the number of particle connections in a chain aggregate: t= tFrenkel * N−1 0.68. read less NOT USED (high confidence) T. Hawa and M. Zachariah, “Development of a phenomenological scaling law for fractal aggregate sintering from molecular dynamics simulation,” Journal of Aerosol Science. 2007. link Times cited: 28 NOT USED (high confidence) L. Marqués, L. Pelaz, I. Santos, P. López, M. Aboy, and V. Venezia, “Molecular Dynamics Simulation of Octadecaborane Implantation into Silicon,” 2007 Spanish Conference on Electron Devices. 2007. link Times cited: 0 Abstract: We have carried out molecular dynamics simulations of monato… read moreAbstract: We have carried out molecular dynamics simulations of monatomic B and octadecaborane cluster implantations into Si in order to make a comparative study and determine the advantages and drawbacks of each approach when used to fabricate shallow junctions. We have simulated a total of 1000 cascades of monatomic boron and an equivalent of 56 cascades of octadecaborane in order to have good statistics. We have obtained and analyzed the doping profiles and the amount and morphology of the damage produced within the target. Our simulation results indicate that the use of octadecaborane clusters for the implantation process shows several advantages with respect to monatomic B beams, mainly related to the reduction of channeling and the lower amount of residual damage at the end of range. read less NOT USED (high confidence) L. Xiong, Y. Chen, and J. D. Lee, “Atomistic simulation of mechanical properties of diamond and silicon carbide by a field theory,” Modelling and Simulation in Materials Science and Engineering. 2007. link Times cited: 21 Abstract: This paper presents a multiscale field theory and its applic… read moreAbstract: This paper presents a multiscale field theory and its application in modelling and simulation of atomistic systems involving three-body interaction forces. Atomistic formulation of the multiscale field theory is introduced. Numerical simulations based on the field theory are performed to investigate the material behaviours of diamond and silicon carbide at the atomic scale. We have obtained the tensile strength and the elastic modulus that approach that obtained by first principles calculations for both diamond and silicon carbide. Their nanoscale deformation and failure mechanism are revealed. It is interesting to observe that under tensile loading, unlike silicon carbide, diamond has gone through a phase transformation as well as local amorphization before failure. The potential application of this atomic field theory is discussed. read less NOT USED (high confidence) J. Adhikari and A. Kumar, “Study of structural and thermodynamic properties of GaAs and InAs using Monte Carlo simulations,” Molecular Simulation. 2007. link Times cited: 6 Abstract: Binary compound semiconductor alloys such as GaAs and InAs f… read moreAbstract: Binary compound semiconductor alloys such as GaAs and InAs find extensive use in our daily lives. This study predicts the structural and thermodynamic properties such as the lattice constant, linear thermal expansion coefficient, nearest neighbour distances and molar heat capacities at constant volume, and their variations with temperature using Monte Carlo simulations. The Tersoff potential model is used to describe the interatomic interactions and the model is validated by comparing the predicted properties against experimental data for GaAs. The simulation results for the GaAs alloy show good agreement with literature data for lattice constant and bond length measurements. Linear thermal expansion coefficients are overestimated consistently as compared to experimental data for all temperatures. Low temperature range thermal expansion coefficient data capture qualitative behaviour but is unable to accurately predict quantitative data. The specific heat at constant volume measured at high temperatures follows the Dulong–Petit law. Having established the validity of the Tersoff potential in modelling III–V binary alloys, the same properties and their variance with temperature are determined for the InAs alloy. read less NOT USED (high confidence) J. Zhao, X. Guo, and B. Wen, “A nonorthogonal tight-binding model for hydrocarbon molecules and nanostructures,” Molecular Simulation. 2007. link Times cited: 3 Abstract: In spirit of extended-Hückel approximations, we have develop… read moreAbstract: In spirit of extended-Hückel approximations, we have developed a nonorthogonal tight-binding total energy model for hydrocarbons with only a few adjustable parameters. Our model reproduces the geometry structures, binding energies, on-site charge transfer and vibrational frequencies of a variety of hydrocarbon molecules reasonably well. Comparative calculations on carbon fullerenes and nanotubes using tight-binding model and density functional theory demonstrate the potential of applying this model to large scale simulations of carbon nanostructures. read less NOT USED (high confidence) F. Gou, M. Chuanliang, C. Lingzhouting, and Q. Qian, “Atomic simulation of SiC etching by energetic SiF3,” Journal of Vacuum Science and Technology. 2007. link Times cited: 3 Abstract: The authors present results from molecular-dynamics simulati… read moreAbstract: The authors present results from molecular-dynamics simulations of SiF3 impact on SiC (100) surfaces at normal incidence and over a range of energies of 10, 50, and 150eV. The surface temperatures are set to 300K for all energies and 600K for 150eV. The uptake of Si atoms is sensitive to the incident energy and temperature, while the uptake of F atoms is not very sensitive to the incident energy and temperature. The simulation results show that the etching yield of Si is higher than that of C. After 30 ML (monolayers) fluence, SiF3 does not etch SiC. The F-containing reaction layer is sensitive to the incident energy. The thickness of the reaction layer increases with the incident energy. In the reaction layer, SiF, SiF2, CF, and CF2 species are dominant. In etch products, atomic F etch products are dominant. Si atoms in SiC are mainly sputtered as SiFx (x=1–4). C atoms in SiC are sputtered as larger SixCyFZ species. read less NOT USED (high confidence) F. Montalenti, A. Marzegalli, G. Capellini, M. D. Seta, and L. Miglio, “Vertical and lateral ordering of Ge islands grown on Si(001): theory and experiments,” Journal of Physics: Condensed Matter. 2007. link Times cited: 15 Abstract: A set of recent results concerning lateral and vertical orde… read moreAbstract: A set of recent results concerning lateral and vertical ordering of Ge islands grown on Si(001) is reviewed. Experimental data generated by chemical vapour deposition and analysed by atomic force microscopy and photoelectron spectroscopy are compared with computer simulations and modelling based on atomistic approaches and continuum theory. In particular, we show that it is possible to probe experimentally the detailed strain field generated by buried Ge islands at the surface of the Si capping layer. The observed arrangement of small Ge islands grown over the capping layer is demonstrated to be very close to the one predicted by a simple model where the local chemical potential is inferred from the strain field at the atomic scale, as given by Tersoff-potential molecular dynamics simulations. Moreover, we review recent experimental evidence for lateral ordering, triggered by partial Si capping, in the first layer of Ge islands on Si(001). Theoretical support is given by showing that when two islands lie in close proximity the elastic field is likely to generate a flow of atoms leading to an effective gliding motion along opposite directions of both islands, eventually stopped by the presence of further neighbouring islands. read less NOT USED (high confidence) M. Griebel and J. Hamaekers, “Molecular dynamics simulations of boron-nitride nanotubes embedded in amorphous Si-B-N,” Computational Materials Science. 2007. link Times cited: 24 NOT USED (high confidence) X. W. Zhou and H. Wadley, “A potential for simulating the atomic assembly of cubic AB compounds,” Computational Materials Science. 2007. link Times cited: 7 NOT USED (high confidence) H.-jun Shen, “RETRACTED ARTICLE: MD simulations on the melting and compression of C, SiC and Si nanotubes,” Journal of Materials Science. 2007. link Times cited: 24 NOT USED (high confidence) F. Gou, L. Chen, C. Meng, and Q. Qian, “Molecular dynamics simulations of reactive etching of SiC by energetic fluorine,” Applied Physics A. 2007. link Times cited: 6 NOT USED (high confidence) B. Yang and V. Tewary, “Multiscale modeling of point defects in Si-Ge(001) quantum wells,” Physical Review B. 2007. link Times cited: 8 Abstract: A computationally efficient hybrid Green's function (GF… read moreAbstract: A computationally efficient hybrid Green's function (GF) technique is developed for multiscale modeling of point defects in a trilayer lattice system that links seamlessly the length scales from lattice (subnanometers) to continuum (bulk). The model accounts for the discrete structure of the lattice including nonlinear effects at the atomistic level and full elastic anisotropy at the continuum level. The model is applied to calculate the discrete core structure of point defects (vacancies and substitutional impurities) in Si-Ge(001) quantum wells (QWs) that are of contemporary technological interest. Numerical results are presented for the short range and long range lattice distortions and strains in the lattice caused by the defects and their formation energy and Kanzaki forces that are basic characteristics of the defects. The continuum and the lattice GFs of the material system are used to link the different length scales, which enables us to model the point defects and extended defects such as the quantum well in a unified formalism. Nonlinear effects in the core of the point defects are taken into account by using an iterative scheme. The Tersoff potential is used to set up the lattice structure, compute the unrelaxed forces and force constants in the lattice, andmore » derive the elastic constants required for the continuum GF. It is found that the overall elastic properties of the material and the properties of defects vary considerably when the material is strained from the bulk to the QW state. This change in the defect properties is very significant and can provide a characteristic signature of the defect. For example, in the case of a single vacancy in Ge, the strain reverses the sign of the relaxation volume. It is also found that the defect properties, such as the defect core structures, change abruptly across a Ge/Si interface. The transition occurs over a region extending from two to four lattice constants, depending upon the defect species.« less read less NOT USED (high confidence) X. W. Zhou and H. Wadley, “A potential for simulating the atomic assembly of cubic elements,” Computational Materials Science. 2007. link Times cited: 10 NOT USED (high confidence) A. Martinez-Limia, J. Zhao, and P. Balbuena, “Molecular dynamics study of the initial stages of catalyzed single-wall carbon nanotubes growth: force field development,” Journal of Molecular Modeling. 2007. link Times cited: 44 NOT USED (high confidence) Y. Umeno, Y. Kinoshita, and T. Kitamura, “Ab initio DFT simulation of ideal shear deformation of SiC polytypes,” Modelling and Simulation in Materials Science and Engineering. 2007. link Times cited: 28 Abstract: We perform ab initio density functional calculations to inve… read moreAbstract: We perform ab initio density functional calculations to investigate the ideal shear deformation of SiC polytypes (3C, 2H, 4H and 6H). The deformation of the cubic and hexagonal polytypes in the small-strain region can be well represented by the elastic property of component Si4C-tetrahedrons. The stacking pattern in the polytypes affects strain localization, which is correlated with the GSF energy profile of each shuffle-set plane and the ideal shear strength. Compressive hydrostatic stress decreases the ideal shear strength but does not much affect the shear elastic coefficient. Tersoff classical interatomic potential can represent the deformation behaviour of SiC crystals in the small-strain region but cannot be applied to largely sheared and compressed situations. read less NOT USED (high confidence) R. Drautz, X. W. Zhou, D. Murdick, B. Gillespie, H. Wadley, and D. Pettifor, “Analytic bond-order potentials for modelling the growth of semiconductor thin films,” Progress in Materials Science. 2007. link Times cited: 28 NOT USED (high confidence) L. Velázquez and S. Curilef, “A thermodynamic fluctuation relation for temperature and energy,” Journal of Physics A: Mathematical and Theoretical. 2007. link Times cited: 22 Abstract: The present work extends the well-known thermodynamic relati… read moreAbstract: The present work extends the well-known thermodynamic relation C = β2⟨δE2⟩ for the canonical ensemble. We start from the general situation of the thermodynamic equilibrium between a large but finite system of interest and a generalized thermostat, which we define in the course of the paper. The resulting identity ⟨δβδE⟩ = 1 + ⟨δE2⟩∂2S(E)/∂E2 can account for thermodynamic states with a negative heat capacity C < 0; at the same time, it represents a thermodynamic fluctuation relation that imposes some restrictions on the determination of the microcanonical caloric curve β(E) = ∂S(E)/∂E. Finally, we comment briefly on the implications of the present result for the development of new Monte Carlo methods and an apparent analogy with quantum mechanics. read less NOT USED (high confidence) L. Marqués, L. Pelaz, and I. Santos, “Molecular dynamics study of B18H22 cluster implantation into silicon,” Nuclear Instruments & Methods in Physics Research Section B-beam Interactions With Materials and Atoms. 2007. link Times cited: 3 NOT USED (high confidence) K. D. Krantzman, D. B. Kingsbury, and B. Garrison, “Cluster induced chemistry at solid surfaces: Molecular dynamics simulations of keV C60 bombardment of Si,” Nuclear Instruments & Methods in Physics Research Section B-beam Interactions With Materials and Atoms. 2007. link Times cited: 30 NOT USED (high confidence) Z. Huang, Z. Guo, X. Chen, Z. Yu, T. M. Yu, and W. Lee, “Microscopic machining mechanism of polishing based on vibrations of liquid,” Nanotechnology. 2007. link Times cited: 8 Abstract: A molecular dynamics method has been applied to study the me… read moreAbstract: A molecular dynamics method has been applied to study the mechanism of polishing based on vibrations of liquid. Movements of polishing particles and formations of impact dents are simulated and discussed. The abrasive effect between particle and machined substrate is evaluated empirically. Polishing qualities, including roughness and fractal character under multiple impacts, are obtained by numerical methods. Results show that the particle will vibrate and roll viscously on the substrate. Press, tear and self-organization effects will be responsible for the formation of impact dents. Simulation results are compared with experimental data to verify the conclusions. read less NOT USED (high confidence) J. Crocombette, G. Dumazer, N. Q. Hoang, F. Gao, and W. J. Weber, “Molecular Dynamics Modeling of the Thermal Conductivity of Irradiated SiC as a Function of Cascade Overlap,” Journal of Applied Physics. 2007. link Times cited: 34 Abstract: SiC thermal conductivity is known to decrease under irradiat… read moreAbstract: SiC thermal conductivity is known to decrease under irradiation. To understand this effect, we study the variation of the thermal conductivity of cubic SiC with defect accumulation induced by displacement cascades. We use an empirical potential of the Tersoff type in the framework of nonequilibrium molecular dynamics. The conductivity of SiC is found to decrease with dose, in very good quantitative agreement with low temperature irradiation experiments. The results are analyzed in view of the amorphization states that are created by the cascade accumulation simulations. The calculated conductivity values at lower doses are close to the smallest measured values after high temperature irradiation, indicating that the decrease of the conductivity observed at lower doses is related to the creation of point defects. A subsequent decrease takes place upon further cascade accumulation. It is characteristic of the amorphization of the material and is experimentally observed for low temperature irradiation only. read less NOT USED (high confidence) J. Kang and Q. Jiang, “Electrostatically telescoping nanotube nonvolatile memory device,” Nanotechnology. 2007. link Times cited: 50 Abstract: We propose a nonvolatile memory based on carbon nanotubes (C… read moreAbstract: We propose a nonvolatile memory based on carbon nanotubes (CNTs) serving as the key building blocks for molecular-scale computers and investigate the dynamic operations of a double-walled CNT memory element by classical molecular dynamics simulations. The localized potential energy wells achieved from both the interwall van der Waals energy and CNT–metal binding energy make the bistability of the CNT positions and the electrostatic attractive forces induced by the voltage differences lead to the reversibility of this CNT memory. The material for the electrodes should be carefully chosen to achieve the nonvolatility of this memory. The kinetic energy of the CNT shuttle experiences several rebounds induced by the collisions of the CNT onto the metal electrodes, and this is critically important to the performance of such an electrostatically telescoping CNT memory because the collision time is sufficiently long to cause a delay of the state transition. read less NOT USED (high confidence) D. Cheng, W. Wang, and S. Huang, “Thermal Evolution of a Platinum Cluster Encapsulated in Carbon Nanotubes,” Journal of Physical Chemistry C. 2007. link Times cited: 27 Abstract: A Monte Carlo method has been performed to simulate the ther… read moreAbstract: A Monte Carlo method has been performed to simulate the thermal evolution of an icosahedral Pt55 cluster encapsulated in the (15, 15) and (20, 20) single wall carbon nanotubes (SWNTs), using the second-moment approximation of the tight-binding potentials for metal−metal interactions. The metal−carbon interactions are modeled by the Lennard-Jones potential, and the carbon atoms on the SWNTs are considered to be fixed. The melting-like structural transformation is found for the icosahedral clusters encapsulated in SWNTs. The melting-like transformation temperatures of the icosahedral clusters encapsulated in SWNTs are estimated from the fluctuations of the total potential energy, which are 280 and 320 K, respectively. The simulations indicate that the melting-like transformation temperature for the encapsulated icosahedral clusters increases with the pore size of SWNTs. At higher temperatures, a stacked structure in layers is found for the encapsulated icosahedral Pt55 clusters. Simulation results reveal th... read less NOT USED (high confidence) L. Meng, K. Zhang, G. M. Stocks, and J. Zhong, “Small Si clusters on surfaces of carbon nanotubes,” Journal of Applied Physics. 2006. link Times cited: 1 Abstract: Structures of small Si clusters, Sin, on surfaces of carbon … read moreAbstract: Structures of small Si clusters, Sin, on surfaces of carbon nanotubes have been studied by molecular dynamics simulation. We show that the lowest-energy structures of Sin are three-dimensional clusters rather than thin Si sheets covering the surface of a nanotube. As n increases from 10 to 30, Sin undergoes structural transitions from a tentlike structure (with nanotube surface as its base) to a cagelike structure (without interior atoms) and further to a spherical compact structure (with interior atoms). Our results are different from the structures of small Si clusters found in a free space without Si-nanotube interaction. read less NOT USED (high confidence) F. Gou, M. Gleeson, and A. Kleyn, “Theoretical modeling of energy redistribution and stereodynamics in CF scattering from Si(100) under grazing incidence.,” Physical chemistry chemical physics : PCCP. 2006. link Times cited: 6 Abstract: We have simulated CF scattering from Si(100) using the molec… read moreAbstract: We have simulated CF scattering from Si(100) using the molecular dynamics method. Translational energy loss spectra are presented. The shape of the energy loss distribution as a result of internal energy release is analyzed. At the classical turning point, the internal energy of the molecule is mainly in the form of rotational energy. The strong rotational excitation results in additional molecule-surfaces interactions during the latter half of the collision. These additional collisions permit some molecules that initially gain internal energy exceeding the bond strength to ultimately survive the collision process via rotational de-excitation. The rotational motion exhibited by surviving molecules is determined by the combination of the molecular axis orientation and the local surface structure during the collision process. The rotation planes of the surviving molecules are preferentially aligned with the surface normal (cartwheel-like and propeller-like motions). In this study, propeller-like motion of the surviving molecules is predicted. The majority of surviving molecules exhibit a cartwheel-like motion. However, molecules that gain a propeller-like rotation exhibit a much better alignment of their planes-of-rotation compared with molecules exhibiting cartwheel-like motion. read less NOT USED (high confidence) K. Sugio, H. Fukushima, and O. Yanagisawa, “Molecular Dynamics Simulation of Grain Boundary Formation and Migration in Silicon,” Materials Transactions. 2006. link Times cited: 5 Abstract: Molecular dynamics simulation using Tersoff potential was ca… read moreAbstract: Molecular dynamics simulation using Tersoff potential was carried out to investigate the formation and the migration of (010) E5 twist boundary in silicon. Effects of carbon atoms on the grain boundary formation and the grain boundary migration were also investigated. Amorphous thin layers remained at the twist boundary even after crystallization, and changes in the thickness of this layers caused grain boundary migration. When carbon atoms were segregated at the twist boundary, these atoms prevented shrinkage of an amorphous thin layer, and the grain boundary migration was retarded. Precipitated carbon atoms within the grain produces a strain field and this strain field possibly became driving force for the grain boundary migration. read less NOT USED (high confidence) Y. Guo and W. Guo, “Structural transformation of partially confined copper nanowires inside defected carbon nanotubes,” Nanotechnology. 2006. link Times cited: 66 Abstract: The encapsulated copper atoms inside a defected single-walle… read moreAbstract: The encapsulated copper atoms inside a defected single-walled carbon nanotube escape from the tube through the defect hole as the temperature increases. This causes the partially confined copper nanowires (CNWs) to undergo special structural transformations from a solid to a distinguishable helical layered structure and finally to the liquid state. The defect has a vital function in automatically adjusting the internal pressure and copper atom density. The critical structural transformation temperature of the CNW is significantly influenced by the confinement conditions of the carbon nanotube. read less NOT USED (high confidence) F. Ratto, G. Costantini, A. Rastelli, O. Schmidt, K. Kern, and F. Rosei, “Alloying of self-organized semiconductor 3D islands,” Journal of Experimental Nanoscience. 2006. link Times cited: 21 Abstract: We present a short review of alloying in uncapped self-organ… read moreAbstract: We present a short review of alloying in uncapped self-organized semiconductor heteronanostructures. Our aim is to provide a logical guide through the main concepts proposed in recent scientific debates. In particular, we focus on the issue of mapping the chemical composition within individual germanium quantum dots grown on silicon surfaces, a widely studied model system with high technological potential. We discuss the different experimental results reported so far in the literature, along with the main theories suggested for their rationalization. In particular, we expand on the interplay of competing factors, including thermodynamic considerations, strain relaxation and kinetic limitations. Finally, we propose a possible pathway towards a unifying picture, with the intention to motivate further research on this topic. read less NOT USED (high confidence) Q. Tang and F. Chen, “MD simulation of phase transformations due to nanoscale cutting on silicon monocrystals with diamond tip,” Journal of Physics D: Applied Physics. 2006. link Times cited: 43 Abstract: A three-dimensional molecular dynamics simulation is perform… read moreAbstract: A three-dimensional molecular dynamics simulation is performed to study atomic force microscopy cutting on silicon monocrystal surface. The displacive phase transformation from the four-coordinated diamond cubic phase to the six-coordinated β-silicon phase is observed due to localized high pressure. During phase transformation, atoms are of high potential and temperature, and the values of pressure and temperature are in good agreement with those according to the phase diagram. read less NOT USED (high confidence) K. Nishio, T. Morishita, W. Shinoda, and M. Mikami, “Molecular dynamics simulations of self-organized polyicosahedral Si nanowire.,” The Journal of chemical physics. 2006. link Times cited: 24 Abstract: A novel polyicosahedral nanowire is spontaneously formed in … read moreAbstract: A novel polyicosahedral nanowire is spontaneously formed in a series of annealing molecular dynamics simulations of liquid Si inside a nanopore of 1.36 nm in diameter. The polyicosahedral Si nanowire is stable even in a vacuum up to about 77% of the melting temperature of bulk Si. Our structural energy calculations reveal that the polyicosahedral nanowire is energetically advantageous over the pentagonal one for a wire whose diameter is less than 6.02 nm, though the latter has been recently proposed as the lowest energy wire. These results suggest the possibility of the formation of a new stable polyicosahedral Si nanowire. read less NOT USED (high confidence) V. Kharlamov, M. Lubov, E. E. Zhurkin, and Y. Trushin, “Molecular dynamics study of the diffusion barriers for silicon and carbon adatoms on a Si(111) surface,” Technical Physics Letters. 2006. link Times cited: 1 NOT USED (high confidence) F. Ribeiro, É. Castelier, M. Bertolus, and M. Defranceschi, “Molecular Dynamics as a tool to interpret macroscopic amorphization-induced swelling in silicon carbide,” The European Physical Journal B - Condensed Matter and Complex Systems. 2006. link Times cited: 5 NOT USED (high confidence) H. Lu, N. Daphalapurkar, B. Wang, S. Roy, and R. Komanduri, “Multiscale simulation from atomistic to continuum – coupling molecular dynamics (MD) with the material point method (MPM),” Philosophical Magazine. 2006. link Times cited: 46 Abstract: A new multiscale simulation approach is introduced that coup… read moreAbstract: A new multiscale simulation approach is introduced that couples atomistic-scale simulations using molecular dynamics (MD) with continuum-scale simulations using the recently developed material point method (MPM). In MPM, material continuum is represented by a finite collection of material points carrying all relevant physical characteristics, such as mass, acceleration, velocity, strain and stress. The use of material points at the continuum level provides a natural connection with the atoms in the lattice at the atomistic scale. A hierarchical mesh refinement technique in MPM is presented to scale down the continuum level to the atomistic level, so that material points at the fine level in MPM are allowed to directly couple with the atoms in MD. A one-to-one correspondence of MD atoms and MPM points is used in the transition region and non-local elastic theory is used to assure compatibility between MD and MPM regions, so that seamless coupling between MD and MPM can be accomplished. A silicon single crystal under uniaxial tension is used in demonstrating the viability of the technique. A Tersoff-type, three-body potential was used in the MD simulations. The coupled MD/MPM simulations show that silicon under nanometric tension experiences, with increasing elongation in elasticity, dislocation generation and plasticity by slip, void formation and propagation, formation of amorphous structure, necking, and final rupture. Results are presented in terms of stress–strain relationships at several strain rates, as well as the rate dependence of uniaxial material properties. This new multiscale computational method has potential for use in cases where a detailed atomistic-level analysis is necessary in localized spatially separated regions whereas continuum mechanics is adequate in the rest of the material. read less NOT USED (high confidence) T. Hammerschmidt, E. Schöll, and M. Scheffler, “Growth simulations of InAs/GaAs quantum dots.” 2006. link Times cited: 6 Abstract: Semiconductor nanostructures, and particularly quantum dots … read moreAbstract: Semiconductor nanostructures, and particularly quantum dots (QDs), have promising potential for technical applications such as light-emitting diodes, lasers, new devices, and quantum computers. But the big number of QDs needed, less than billions are hardly useful, is far beyond the means of normal manufacturing methods. For this nanotechnology to prevail, the QDs have to build themselves by self-assembly and self-organization. In this work, we study the growth of InAs QDs on GaAs substrates. For this purpose we developed a many-body potential of the Abell-Tersoff type that is able to account for the energetic balance of strain relief and QD side-facet formation during QD growth. It simultaneously captures many microscopic quantities of In, Ga, As, GaAs, and InAs bulk phases, as well as GaAs and InAs surface structures as obtained from experiment and density-functional theory (DFT) calculations with good overall accuracy. Its predictions for biaxial strained GaAs and InAs are in good agreement with DFT calculations and analytic results of continuum-elasticity theory. Based on recent STM results, we set up detailed atomic structures of InAs QDs with InAs wetting layers and homogenous InAs films on GaAs, relax them with our potential, and compare the resulting total energies. We show that the lateral elastic interaction of ‘hut’-like QDs dominated by {317} facets is significantly larger than that of ‘dome’-like QDs dominated by {101} facets. A strain-tensor analysis suggests that this effect is due to the relative orientations of the QD side facets to the elastic principal axes. Our calculated onset of the Stranski-Krastanov growth mode with respect to the InAs coverage is in good agreement with experimentally deduced values. The critical nucleus for QD formation is approximately 70 In atoms in size and poses an energy barrier of 5.3 eV. Furthermore, we can explain the experimentally observed shape sequence of ‘hut’-like QDs and ‘dome’-like QDs through the finding of distinct stability regimes. The regime separation depends strongly on the chemical potentials and the QD density. The experimental finding of vertical growth correlation in QD stacks can be explained by a distinct minimum in the potential-energy-surface (PES) of freestanding QDs in different lateral positions above overgrown QDs. This effect vanishes with increasing distance between the stacked QDs. The energy gain observed in our calculations can lower the energy barrier for QD formation to 3.5 eV and the size of the critical nucleus to only 25 In atoms. Additionally, we calculated the PES for In adsorption on surfaces that correspond to major side facets of ‘hut’and ‘dome’-like QDs by means of DFT to study possible kinetic effects. The dominating diffusion paths are perpendicular and parallel to the QD contour lines on {317} facets, but only perpendicular on {101} facets. The In incorporation on {317} facets could be kinetically limited due to the high barrier of approximately 1 eV for breaking As dimers. The diffusion barriers on {101} facets are lowered near the bottom of ‘dome’-like QDs, which supports the interpretation of the {317} facets on top as kinetic effect. read less NOT USED (high confidence) T. Kumagai, S. Hara, S. Izumi, and S. Sakai, “Development of a bond-order type interatomic potential for Si–B systems,” Modelling and Simulation in Materials Science and Engineering. 2006. link Times cited: 8 Abstract: A bond-order type interatomic potential for Si–B systems is … read moreAbstract: A bond-order type interatomic potential for Si–B systems is developed. We employed the bond-order type potential function proposed by Tersoff. Properties of Si–B crystals which involve a wide range of local atomic environments are used for fitting. The formation energies of various atomic structures that are thought to appear during B diffusion or Si–B clustering are also fitted. A genetic algorithm is used to find the optimized parameters. The resulting potential reproduced well the Si-interstitial-assisted diffusion of B as well as the physical properties used for fitting. read less NOT USED (high confidence) F. Cleri and P. Keblinski, “What’s so special about nanocrystalline semiconductors?,” Int. J. Comput. Sci. Eng. 2006. link Times cited: 2 Abstract: Nanocrystalline semiconductors display unique features compa… read moreAbstract: Nanocrystalline semiconductors display unique features compared to coarse-grained microstructures and even to their monocrystalline counterparts. We contend that such peculiarities are due to: (1) the extremely large fraction of atoms located at Grain Boundaries (GBs) and (2) the 'character distribution' of GBs, which are mostly high-energy, random interfaces. Initially, we study the structure of random GBs in nanocrystalline semiconductors by means of large-scale Molecular Dynamics (MD) simulations. Subsequently, the atomic structure and electronic properties of some typical high-energy GBs in Si- and C-based nanostructures are characterised by means of a semi-empirical tight-binding Hamiltonian. We show that relevant properties of nanocrystalline semiconductors containing a large fraction of high-energy GBs are quite distinct with respect to those of coarse-grained and bulk semiconductors. read less NOT USED (high confidence) Y. Hu, O. Shenderova, Z. Hu, C. Padgett, and D. Brenner, “Carbon nanostructures for advanced composites,” Reports on Progress in Physics. 2006. link Times cited: 196 Abstract: Recent advances in the science and technology of composites … read moreAbstract: Recent advances in the science and technology of composites utilizing carbon nanostructures are reviewed, including experimental results and modelling studies of composite properties and processing. Carbon nanotubes are emphasized, with other carbon nanostructures such as fullerenes, ultradispersed diamond clusters and diamond nanorods also being discussed. read less NOT USED (high confidence) J. Kang, S. Kong, and H. Hwang, “Electromechanical analysis of suspended carbon nanotubes for memory applications,” Nanotechnology. 2006. link Times cited: 14 Abstract: A nanoelectromechanical model based on atomistic simulations… read moreAbstract: A nanoelectromechanical model based on atomistic simulations including charge transfer was investigated. Classical molecular dynamics simulations combined with continuum electric models were applied to a carbon-nanotube nanoelectromechanical memory device that was characterized by carbon-nanotube bending performance. For a suspended (5, 5) carbon-nanotube bridge with a length of 11.567 nm (LCNT) and a trench depth of 0.9–1.5 nm (H), molecular dynamics results showed that the threshold voltage increased linearly as H increased and the transition time decreased exponentially at each trench depth as the applied bias increased. When H/LCNT was below 0.13, the carbon-nanotube nanoelectromechanical memories acted as nonvolatile memory devices, whereas they were volatile memory or switching devices when H/LCNT was above 0.14. read less NOT USED (high confidence) J. Kang, K. Song, H. Hwang, and Q. Jiang, “Nanotube oscillator based on a short single-walled carbon nanotube bundle,” Nanotechnology. 2006. link Times cited: 75 Abstract: Carbon nanotube (CNT) oscillators based on a single-walled C… read moreAbstract: Carbon nanotube (CNT) oscillators based on a single-walled CNT bundle were investigated using classical molecular dynamics simulations. We present the schematics of a CNT bundle oscillator that could be initiated by an electrostatic capacitive force. While the capacitive force acting on a CNT oscillator extruded it, the force exerted on the CNT oscillator by the excess van der Waals energy sucked it into the bundle. Therefore, the CNT oscillator could be oscillated by both Coulomb and the van der Waals interactions. The operation frequency of a CNT bundle oscillator could be controlled by both the size and the length of the bundle. Our molecular dynamics simulation results showed unique features of the CNT bundle oscillators such as chaotic signature and high damping rate. CNT oscillation in the bundle showed the coupled motion to be dependent on other CNTs rather than a collective motion of the bundle. As the number of CNTs in the bundle oscillator increased, the chaotic signature of the CNT bundle oscillator increased with the increasing of coupled CNTs. read less NOT USED (high confidence) T. Jacob and W. Goddard, “Water formation on Pt and Pt-based alloys: a theoretical description of a catalytic reaction.,” Chemphyschem : a European journal of chemical physics and physical chemistry. 2006. link Times cited: 108 Abstract: In the past, the modeling of catalytic processes was limited… read moreAbstract: In the past, the modeling of catalytic processes was limited by the size and complexity of the systems involved. However, the enormous progress in both computer power and theoretical methods has made computational modeling a valuable tool in increasing our knowledge of catalytic reactions on the atomic scale. While complex reactions can be studied by dividing the overall reaction into a series of steps calculable by quantum mechanics, the combination with methods appropriate for larger time and length scales enables the gap between these regimes to be bridged. This provides a more realistic modeling of the experimental system and allows important environmental effects such as solvation to be taken into account. In this Minireview we describe some of the main theoretical methodologies that are used to study catalytic properties and reactions on surfaces. Using these methods, we study the seemingly simple reaction of water formation out of hydrogen and oxygen on Pt and Pt/Ni alloy catalysts. To provide a more realistic description we also discuss the interesting effects determined by hydrating the system or using alloy nanoparticles rather than extended surfaces. read less NOT USED (high confidence) I. Golovnev, T. Basova, E. K. Koltsov, and I. Igumenov, “Molecular dynamics method in studies of molecular film growth processes,” Journal of Structural Chemistry. 2006. link Times cited: 1 NOT USED (high confidence) S. Hai-yang, S. He-ming, and Z. Guo-xiang, “Molecular Dynamics Study of Effects of Si-Doping Upon Structure and Mechanical Properties of Carbon Nanotube,” Communications in Theoretical Physics. 2006. link Times cited: 24 Abstract: In this paper, a Si-doped single-walled carbon nanotube (SWC… read moreAbstract: In this paper, a Si-doped single-walled carbon nanotube (SWCNT) (7,7) and several perfect armchair SWCNTs are investigated using the classical molecular dynamics simulations method. The inter-atomic short-range interaction is represented by empirical Tersoff bond order potential. The computational results show that the axial Young's modulus of the perfect SWCNTs are in the range of 1.099±0.005 TPa, which is in good agreement with the existing experimental results. From our simulation, the Si-doping decreases the Young's modulus of SWCNT, and with the increased strain levels, the effect of Si-doped layer in enhancing the local stress level increases. The Young's modulus of armchair SWCNTs are weakly affected by tube radius. read less NOT USED (high confidence) A. Šiber, “Energies of sp2 carbon shapes with pentagonal disclinations and elasticity theory,” Nanotechnology. 2006. link Times cited: 13 Abstract: Energies of a certain class of fullerene molecules (elongate… read moreAbstract: Energies of a certain class of fullerene molecules (elongated, contracted and regular icosahedral fullerenes) are numerically calculated using a microscopic description of carbon–carbon bonding. It is shown how these results can be interpreted and comprehended using the theory of elasticity that describes bending of a graphene plane. Detailed studies of a wide variety of structures constructed by application of the same general principle are performed, and analytical expressions for energies of such structures are derived. Comparison of numerical results with the predictions of a simple implementation of elasticity theory confirms the usefulness of the latter approach. read less NOT USED (high confidence) M. Cheng and Y. Lu, “Friction between Carbon Nanotube and Graphite using Molecular Dynamics,” 2006 IEEE Conference on Emerging Technologies - Nanoelectronics. 2006. link Times cited: 4 Abstract: The fundamental understanding of friction phenomena at atomi… read moreAbstract: The fundamental understanding of friction phenomena at atomic level is important in the area of micro-electro-mechanical system and so on. However, the existing knowledges of friction are all based on the Newton mechanics theory and experiments on macroscale. In this paper, the friction between CNT and graphite surface is studied by using classical molecular dynamics simulation. The result shows an anisotropic behavior of friction between two structures, and the symmetry of the nanotube can be characterized by the variation of potential energy as well. read less NOT USED (high confidence) X. W. Zhou, D. Murdick, and H. Wadley, “An electron counting modification to potentials for covalently bonded surfaces,” Journal of Applied Physics. 2006. link Times cited: 4 Abstract: The surface structure of covalently bonded semiconductor mat… read moreAbstract: The surface structure of covalently bonded semiconductor materials undergoes reconstructions that are driven by electron redistribution between dangling and interatom bonds. Conventional interatomic potentials account for neither this electron redistribution nor its effects upon the atomic structure of surfaces. We have utilized an electron counting analysis to develop a surface interatomic potential that captures many of the effects of electron redistribution upon the surface structures of covalently bonded materials. The contributions from this potential decrease rapidly to zero beneath a surface. As a result, this surface potential can be added to many interatomic potentials for covalent materials without affecting its predictions of bulk properties such as cohesive energy, lattice parameters, and elastic constants. We demonstrate the approach by combining the surface potential with a recently proposed bond order potential and use it in a molecular statics simulation of the atomic reconstruction of a w... read less NOT USED (high confidence) M. Cheng and Y. Lu, “Structural stability of carbon nanotubes using molecular dynamics and finite-difference time-domain methods,” IEEE Transactions on Magnetics. 2006. link Times cited: 4 Abstract: The finite-difference time-domain and molecular dynamics met… read moreAbstract: The finite-difference time-domain and molecular dynamics method are coupled in both spatial and temporal dimensions to predict mechanical, thermodynamic, electromagnetic properties, and dynamic behaviors of nanoscale materials/devices in complex electromagnetic fields on atomic level. Using the proposed method, impact processes of carbon nanotubes in electromagnetic field are simulated, and the dynamic cracking process is obtained. Finally the structural stability of nanotubes is discussed read less NOT USED (high confidence) Y. Liu, T. Inamura, and N. Takezawa, “MD Simulation of Ultra-Micro Cutting of Monocrystalline Silicon with Effects of Air,” Jsme International Journal Series C-mechanical Systems Machine Elements and Manufacturing. 2006. link Times cited: 5 Abstract: Effect of atmosphere in ultra-micro cutting has been analyze… read moreAbstract: Effect of atmosphere in ultra-micro cutting has been analyzed using MD (molecular dynamics) simulation carried out in such a way that potentials of surface atoms of diamond tool and silicon workpiece are modified when either of them is exposed to atmosphere. The results of the simulation show that principal cutting force decreases if the rake face of a tool and/or the rear face of chips are exposed to atmosphere during cutting. This result is consistent with the result obtained in microcutting experiments carried out by the authors and also indicates an important role of atmosphere in ultra-sonic vibration cutting. read less NOT USED (high confidence) Y. Chen, “Local stress and heat flux in atomistic systems involving three-body forces.,” The Journal of chemical physics. 2006. link Times cited: 123 Abstract: Local densities of fundamental physical quantities, includin… read moreAbstract: Local densities of fundamental physical quantities, including stress and heat flux fields, are formulated for atomistic systems involving three-body forces. The obtained formulas are calculable within an atomistic simulation, in consistent with the conservation equations of thermodynamics of continuum, and can be applied to systems with general two- and three-body interaction forces. It is hoped that this work may correct some misuse of inappropriate formulas of stress and heat flux in the literature, may clarify the definition of site energy of many-body potentials, and may serve as an analytical link between an atomistic model and a continuum theory. Physical meanings of the obtained formulas, their relation with virial theorem and heat theorem, and the applicability are discussed. read less NOT USED (high confidence) X. W. Zhou, D. Murdick, B. Gillespie, and H. Wadley, “Atomic assembly during GaN film growth : Molecular dynamics simulations,” Physical Review B. 2006. link Times cited: 44 Abstract: Molecular dynamics simulations using a recently developed Ga… read moreAbstract: Molecular dynamics simulations using a recently developed Ga-N Tersoff type bond order interatomic potential have been used to investigate the growth mechanisms of 0001 wurtzite GaN films from thermalized atomic gallium and nitrogen fluxes. The crystallinity and stoichiometry of the deposited wurtzite lattice structures were determined as a function of growth temperature and N:Ga flux ratio. The lattice perfection was found to improve as the growth temperature was increased to 500 K. At a fixed growth temperature, the lattice quality and stoichiometry both reached optimum as the N:Ga ratio approached a value between two and three. The optimum flux ratio increased with increasing growth temperature. These three observations are consistent with experimental studies of growth on wurtzite phase promoting substrates. The atomic assembly mechanisms responsible for these effects have been explored using time-resolved atom position images. The analysis revealed that high quality crystalline growth only occurred when off-lattice atoms which are usually associated with amorphous embryos or defect complexes formed during deposition were able to move to unoccupied lattice sites by thermally activated diffusion processes. The need for a high N:Ga flux ratio to synthesize stochiometric films arises because many of the nitrogen adatoms that impact N-rich 0001 GaN surfaces are re-evaporated. Reductions of the substrate temperature reduce this reevaporation and as a result, the optimum N:Ga ratio for the stoichiometric film formation and best lattice perfection was reduced as the growth temperature was decreased. read less NOT USED (high confidence) D. Murdick, X. W. Zhou, H. Wadley, D. Nguyen-Manh, R. Drautz, and D. Pettifor, “Analytic bond-order potential for the gallium arsenide system,” Physical Review B. 2006. link Times cited: 56 Abstract: An analytic, bond-order potential BOP is proposed and parame… read moreAbstract: An analytic, bond-order potential BOP is proposed and parametrized for the gallium arsenide system. The potential addresses primary and secondary bonding and the valence-dependent character of heteroatomic bonding, and it can be combined with an electron counting potential to address the distribution of electrons on the GaAs surface. The potential was derived from a tight-binding description of covalent bonding by retaining the first two levels of an expanded Green’s function for the and bond-order terms. Predictions using the potential were compared with independent estimates for the structures and binding energy of small clusters dimers, trimers, and tetramers and for various bulk lattices with coordinations varying from 4 to 12. The structure and energies of simple point defects and melting transitions were also investigated. The relative stabilities of the 001 surface reconstructions of GaAs were well predicted, especially under high-arsenicoverpressure conditions. The structural and binding energy trends of this GaAs BOP generally match experimental observations and ab initio calculations. read less NOT USED (high confidence) W. Smith and I. Todorov, “A short description of DL_POLY,” Molecular Simulation. 2006. link Times cited: 190 Abstract: DL_POLY is a general purpose molecular dynamics simulation p… read moreAbstract: DL_POLY is a general purpose molecular dynamics simulation package with in-built parallel algorithms. It may be run on a wide selection of distributed memory parallel computers, from national supercomputers with thousands of processors, to single processor workstations and can simulate small systems with order 100 atoms, to systems with millions of atoms. This introduction provides an outline of the features of the package and the underlying methodology. read less NOT USED (high confidence) N. Juslin et al., “Analytical interatomic potential for modeling nonequilibrium processes in the W–C–H system,” Journal of Applied Physics. 2005. link Times cited: 264 Abstract: A reactive interatomic potential based on an analytical bond… read moreAbstract: A reactive interatomic potential based on an analytical bond-order scheme is developed for the ternary system W–C–H. The model combines Brenner’s hydrocarbon potential with parameter sets for W–W, W–C, and W–H interactions and is adjusted to materials properties of reference structures with different local atomic coordinations including tungsten carbide, W–H molecules, as well as H dissolved in bulk W. The potential has been tested in various scenarios, such as surface, defect, and melting properties, none of which were considered in the fitting. The intended area of application is simulations of hydrogen and hydrocarbon interactions with tungsten, which have a crucial role in fusion reactor plasma-wall interactions. Furthermore, this study shows that the angular-dependent bond-order scheme can be extended to second nearest-neighbor interactions, which are relevant in body-centered-cubic metals. Moreover, it provides a possibly general route for modeling metal carbides. © 2005 American Institute of Physics. DOI: 10.1063/1.2149492 read less NOT USED (high confidence) C. Ciobanu and R. Briggs, “Stability of strained H:Si(105) and H:Ge(105) surfaces,” Applied Physics Letters. 2005. link Times cited: 10 Abstract: We report atomic scale studies of the effect of applied stra… read moreAbstract: We report atomic scale studies of the effect of applied strain and hydrogen environment on the reconstructions of the (105) Si and Ge surfaces. Surface energy calculations for monohydride-terminated (001) and (105) reconstructions reveal that the recently established single-height rebonded model is unstable not only with respect to (001) but also in comparison with other monohydride (105) structures. This finding persists for both Si and Ge, for applied biaxial strains from −4% to 4%, and for nearly the entire relevant domain of the chemical potential of hydrogen, thus providing thermodynamic arguments for the experimentally observed H-induced destabilization of the Ge∕Si(105) surface. read less NOT USED (high confidence) A. Marzegalli, F. Montalenti, and L. Miglio, “Atomistic simulation of a 60° shuffle dislocation segment migrating in a Ge/SiGe(001) epitaxial film,” Journal of Physics: Condensed Matter. 2005. link Times cited: 8 Abstract: We show that the migration process of a 60° shuffle dislocat… read moreAbstract: We show that the migration process of a 60° shuffle dislocation in an heteroepitaxial Ge/Si0.5Ge0.5(001) system can be analysed by classical molecular dynamics simulations. By following the misfit segment during its motion, we build a sequence of strain maps giving detailed information about the elastic-energy relaxation in the film. The atomic-scale mechanisms underlying the dislocation motion towards the interface are also monitored, showing, for instance, that kinks are actually present along the dislocation line. read less NOT USED (high confidence) I. Zarudi, L. Zhang, W. Cheong, and T. X. Yu, “The difference of phase distributions in silicon after indentation with Berkovich and spherical indenters,” Acta Materialia. 2005. link Times cited: 109 NOT USED (high confidence) G. V. Kornich, G. Betz, V. Zaporojtchenko, F. Faupel, and L. I. Lozovskaya, “Molecular dynamics simulation of the interaction of low-energy Ar and Xe ions with copper clusters on a graphite surface,” Physics of the Solid State. 2005. link Times cited: 1 NOT USED (high confidence) J. Kang, K. Song, O. Kwon, and H. Hwang, “Carbon nanotube oscillator operated by thermal expansion of encapsulated gases,” Nanotechnology. 2005. link Times cited: 42 Abstract: We investigated a carbon nanotube (CNT) oscillator controlle… read moreAbstract: We investigated a carbon nanotube (CNT) oscillator controlled by thermal gas expansion using classical molecular dynamics simulations. When the temperature rapidly increased, the force on the CNT oscillator induced by the thermal gas expansion rapidly increased and pushed out the CNT oscillator. As the CNT oscillator extruded from the outer nanotube, the suction force on the CNT oscillator increased by the excess van der Waals (vdW) energy. When the CNT oscillator reached the maximum extrusion point, the CNT oscillator was encapsulated into the outer nanotube by the suction force. Therefore, the CNT oscillator could be oscillated by both the gas expansion and the excess vdW interaction. As the temperature increased, the amplitude of the CNT oscillator increased. At high temperatures, the CNT oscillator escaped from the outer nanotube, because the force on the CNT oscillator due to the thermal gas expansion was higher than the suction force due to the excess vdW energy. By the appropriate temperature controls, such as the maximum temperature, the heating rate, and the cooling rate, the CNT oscillator could be operated. read less NOT USED (high confidence) D. Murdick, X. W. Zhou, H. Wadley, and D. Nguyen-Manh, “Predicting surface free energies with interatomic potentials and electron counting,” Journal of Physics: Condensed Matter. 2005. link Times cited: 15 Abstract: Current interatomic potentials for compound semiconductors, … read moreAbstract: Current interatomic potentials for compound semiconductors, such as GaAs, fail to correctly predict the ab initio calculated and experimentally observed surface reconstructions. These potentials do not address the electron occupancies of dangling bonds associated with surface atoms and their well established role in the formation of low-energy surfaces. The electron counting rule helps account for the electron distribution among covalent and dangling bonds, which, when applied to GaAs surfaces, requires the arsenic dangling bonds to be fully occupied and the gallium dangling bonds to be empty. A simple method for linking this electron counting constraint with interatomic potentials is proposed and used to investigate energetics of the atomic scale structures of the GaAs(001) surface using molecular statics methods. read less NOT USED (high confidence) Y. Nabetani, T. Matsumoto, G. Sasikala, and I. Suemune, “Theory of strain states in InAs quantum dots and dependence on their capping layers,” Journal of Applied Physics. 2005. link Times cited: 19 Abstract: The dependence of strain states in InAs self-assembled quant… read moreAbstract: The dependence of strain states in InAs self-assembled quantum dots (QDs) on their capping layers was investigated by valence-force field model calculations. An InAs QD on (001) GaAs and embedded in a GaNAs capping layer and the one with its dot surface terminated with nitrogen (N) and embedded in a GaAs capping layer show reduced compressive strain within the QDs in the (001) growth plane due to the lateral expansion of the QDs, while the one embedded in an InGaAs capping layer shows enhanced tensile strain along the [001] growth direction. The strain energies around the center of the InAs QDs with the GaNAs capping layer and with the N-surface termination are lowered compared with those for conventional GaAs capping layers. The burying conditions of InAs QDs also modify the sizes of QDs. The stress distributions obtained by strain energy mapping showed that In atoms around the top of QDs undergo inward stress. This inward stress prevents In segregation and explains the experimentally observed improved o... read less NOT USED (high confidence) X. W. Zhou, “Analytical and numerical calculations of interatomic forces and stresses,” Molecular Simulation. 2005. link Times cited: 0 Abstract: Atomistic simulation methods such as molecular dynamics requ… read moreAbstract: Atomistic simulation methods such as molecular dynamics require an efficient calculation of interatomic forces and stresses from pre–defined interatomic potentials. Both analytical and numerical approaches can be used to do this. Analytical approach directly calculates forces and stresses using analytical formulae, and can therefore yield accurate results. However, the force and stress expressions may become extremely complicated as the complexity level of the potential increases, resulting in a prolonged development cycle to implement new potentials. Numerical approach uses finite difference method to evaluate forces and stresses through simple calculation of energies at selected perturbations of crystal configurations. The method can be quickly implemented and tested for any potentials. However, it may result in significant numerical errors. We have compared analytical and numerical calculations of interatomic forces and stresses in molecular dynamics, and identified the conditions where numerical method can be successfully used without significant errors. read less NOT USED (high confidence) D. Fangli, L. Jianbin, W. Shizhu, and W. Jiaxu, “Atomistic structural change of silicon surface under a nanoparticle collision,” Chinese Science Bulletin. 2005. link Times cited: 18 Abstract: This study investigates the effect of the incident angle on … read moreAbstract: This study investigates the effect of the incident angle on the trajectory of a nanoparticle and the damaged region on a silicon surface, by molecular dynamic simulation of the collision and recoil of a nanoparticle with a monocrystlline silicon surface. With the change of the inci-dent angle, the recoil angle of the particle changes in a large range from an obtuse angle to an acute angle. The incident angle determines which part of the particle is in contact with the surface when the particle penetrates into the deepest position. Furthermore, it is the contacting part of the particle that the released elastic deformation energy of the surface acts on. These lead to the phenomenon that the recoil angle is sensitive to the incident angle in the collision process at a nanoscale. A depressed region is formed on the surface after the collision. The shape of the damaged region changes from a deep scoop to a flat arc, which is consistent with the trajec-tory of the particle. Some silicon atoms on the surface are extruded out by the incident particle, and form a pileup at the rim of the depressed region. read less NOT USED (high confidence) S. Kapur, M. Prasad, J. Crocker, and T. Sinno, “Role of configurational entropy in the thermodynamics of clusters of point defects in crystalline solids,” Physical Review B. 2005. link Times cited: 36 Abstract: Received 28 March 2005; revised manuscript received 24 May 2… read moreAbstract: Received 28 March 2005; revised manuscript received 24 May 2005; published 20 July 2005The internal configurational entropy of point defect clusters in crystalline silicon is studied in detail byanalyzing their potential energy landscapes. Both on-lattice and off-lattice calculation approaches are employedto demonstrate the importance of off-lattice configurational states that arise due to a large number of inherentstructures local minima in the energy landscape generated by the interatomic potential function. The resultingcluster configurational entropy of formation is shown to exhibit behavior that is qualitatively similar to thatobserved in supercooled liquids and amorphous solids and substantially alters the thermodynamic properties ofpoint defect clusters in crystals at high temperature. This behavior is shown to be independent of interatomicpotential and cluster type, and suggests that defects in crystals at high temperature should be generally de-scribed by a quasicontinuous collection of nondegenerate states rather than as a single ground state structure.The modified thermodynamic properties of vacancy clusters at high temperature are found to explain a long-standing discrepancy between simulation predictions and experimental measurements of vacancy aggregationdynamics in silicon.DOI: 10.1103/PhysRevB.72.014119 PACS number s : 61.72.Bb, 61.72.Qq read less NOT USED (high confidence) Y. Dai, Y. Yan, J. Wang, B.-de Sun, X. He, and H. Shen, “Atomic-scale study of boron implantation into amorphous carbon,” Journal of Applied Physics. 2005. link Times cited: 3 Abstract: Boron implantation into amorphous carbon substrate has been … read moreAbstract: Boron implantation into amorphous carbon substrate has been investigated by molecular-dynamics simulation based on Tersoff empirical potential. The results show that the implanted boron atom is mainly fourfold coordinated. The average size of the implantation-affected region increases linearly with the kinetic energy of the incident boron atom from 150to300eV. Boron implantation leads to a great increase of the total number of the rings in amorphous carbon network and the larger the kinetic energy, the bigger the increasing number. A time-resolved analysis shows that the implantation process can be naturally divided into four stages, among which the second one featuring a decreased coordination number could be analogous to an endothermic reaction, while the third one featuring an increased coordination number could be analogous to an exothermic reaction, which explains why lower substrate temperature and higher thermal conductivity are favorable for achieving higher average coordination number. read less NOT USED (high confidence) A. Mattoni, L. Colombo, and F. Cleri, “Crack-tip stress shielding by a hard fiber in beta-SiC: an atomistic study,” Comput. Phys. Commun. 2005. link Times cited: 0 NOT USED (high confidence) S. Meloni, M. Rosati, A. Federico, L. Ferraro, A. Mattoni, and L. Colombo, “Computational Materials Science application programming interface (CMSapi): a tool for developing applications for atomistic simulations,” Comput. Phys. Commun. 2005. link Times cited: 10 NOT USED (high confidence) V. Deibuk, “The local atomic structures in Si1–xGex and Si1–xSnx random solid solutions,” Semiconductor physics, quantum electronics and optoelectronics. 2005. link Times cited: 0 Abstract: Using molecular-dynamics method based on three-particle Ters… read moreAbstract: Using molecular-dynamics method based on three-particle Tersoff’s potential simulation we have studied the Si1-xGex and Si1-xSnx random solid solutions. Bond lengths and strain energies of these alloys can be predicted. The calculated results are compared with those obtained from other theoretical calculations and experimental measurements. read less NOT USED (high confidence) S. Park, H. Kim, K. Kang, J. Lee, Y. Choi, and O. Kwon, “Experimental and molecular dynamics study on crystallization of amorphous silicon under external fields,” Journal of Physics D: Applied Physics. 2005. link Times cited: 17 Abstract: Solid-phase crystallization (SPC) of amorphous silicon (a-Si… read moreAbstract: Solid-phase crystallization (SPC) of amorphous silicon (a-Si) under an external force field is investigated experimentally and numerically. Experimental results show that the kinetics of crystallization can be greatly enhanced by applying induction fields without the heating problems of a-Si film and its substrate, since temperature rises during the crystallization process are negligibly small. To explore the underlying acceleration mechanisms for the SPC process under the external fields, molecular dynamics simulations are carried out using the Tersoff potential. The numerical amorphous structure is obtained by the liquid quenching method and is utilized to simulate the crystallization processes at various process temperatures with and without external force fields. While homogeneous crystallization of a-Si could not be achieved readily, it is shown that the heterogeneous crystallization can be significantly accelerated by external force fields. This enhancement is due to increased molecular jumping frequencies associated with the molecular potential energies being increased by external excitations, rather than due to thermal mechanisms dominant in conventional SPC processes. read less NOT USED (high confidence) P. Chantrenne, J. Barrat, X. Blase, and J. Gale, “An analytical model for the thermal conductivity of silicon nanostructures,” Journal of Applied Physics. 2005. link Times cited: 90 Abstract: A simple model of thermal conductivity, based on the harmoni… read moreAbstract: A simple model of thermal conductivity, based on the harmonic theory of solids, is used to study the heat transfer in nanostructures. The thermal conductivity is obtained by summing the contribution of all the vibration modes of the system. All the vibrational properties (dispersion curves and relaxation time) that are used in the model are obtained using the data for bulk samples. The size effect is taken into account through the sampling of the Brillouin zone and the distance that a wave vector can travel between two boundaries in the structure. The model is used to predict the thermal conductivity of silicon nanowires and nanofilms, and demonstrates a good agreement with experimental results. Finally, using this model, the quality of the silicon interatomic potential, used for molecular-dynamics simulations of heat transfer, is evaluated. read less NOT USED (high confidence) V. Samsonov, V. V. Dronnikov, M. Y. Pushkar,’ E. Nikiforova, A. Filippov, and S. D. Muravyev, “Molecular dynamics study of nanoscale structure formation in droplet spreading on solid surfaces,” Journal of Materials Science. 2005. link Times cited: 3 NOT USED (high confidence) T. Hawa and M. Zachariah, “Coalescence kinetics of bare and hydrogen-coated silicon nanoparticles : A molecular dynamics study,” Physical Review B. 2005. link Times cited: 40 Abstract: One of the significant challenges in the use of nanoparticle… read moreAbstract: One of the significant challenges in the use of nanoparticles is the control of primary particle size and extent of agglomeration when grown from the gas phase. In this paper we consider the role of surface passivation of the rate of nanoparticle coalescence. We have studied the coalescence of bare and H-coated silicon nanoparticles of sizes between 2\char21{}6 nm using molecular dynamics simulation at 1000 and 1500 K. We found that coalescence of coated particles consists of two steps, where reaction between particles and relocations of surface atoms near the reacting region, occur in the first step, which comprise an induction period. The second step consists of the nominal coalescence event, which depends on the surface tension and solid-state diffusion in the particle. The hydrogen passivation layer was found to remain on the surface of coalescing pair of the particles during the entire coalescence event. We also develop a mathematical model to describe the dynamics of coalescence of coated particles. The model is able to describe both the initial induction period and the coalescence period, and the role of the extent of surface coverage on the coalescence rate. In general, the entire coalescence time of coated particles is about 3\char21{}5 times that of bare particles, and the exothermicity from coalescence is about half that for the unpassivated particles. read less NOT USED (high confidence) N. Lorente, R. Rurali, and H. Tang, “Single-molecule manipulation and chemistry with the STM,” Journal of Physics: Condensed Matter. 2005. link Times cited: 59 Abstract: We review recent theoretical work on the manipulation of sin… read moreAbstract: We review recent theoretical work on the manipulation of single molecules with scanning probes, in particular the scanning tunnelling microscope (STM). The aim of theories and simulations is to account for the processes, ideally at a quantitative level, that permit the controlled manipulation of matter at the atomic scale in adsorbed molecular systems. In order to achieve this, simulations rely on total energy and electronic structure calculations where a trade-off is made between the size of the system and the accuracy of the calculation. This first stage of the calculation yields the basic quantities used for the second stage: the evaluation of the coupled electron–nuclear dynamics. This second stage is a formidable task and many approximations are involved. In this review, we will present some of the customary approximations regarding the theoretical study of mechanical and inelastic manipulations. Mechanical manipulations use the interaction between the acting probe (usually a metallic tip) and the targeted adsorbate. We review recent results in the field of adsorbate mechanical manipulations and explain how manipulations can be effected by using the interaction between the probe’s tip and certain molecular groups of complex chemisorbed molecular systems. On the other hand, inelastic manipulations use the tunnelling current to convey energy with sub-ångström precision. This current can excite localized vibrations that can induce measurable variations of the tunnelling conductance, hence providing a means of detecting single-molecule vibrations. This current can also inject energy in a few reaction coordinates. Recently, the possibility of vibrational selective manipulations of NH3/Cu(100) has been experimentally demonstrated. The theory presented here addresses the actual pathways accessed when the molecule is excited by the tunnelling current from an STM. read less NOT USED (high confidence) S. Zhang et al., “Mechanics of defects in carbon nanotubes: Atomistic and multiscale simulations,” Physical Review B. 2005. link Times cited: 280 Abstract: Molecular mechanics (MM) calculations together with coupling… read moreAbstract: Molecular mechanics (MM) calculations together with coupling methods bridging MM and finite crystal elasticity are employed to simulate the fracture of defected carbon nanotubes (CNTs) and to compare with the available experimental results. The modified second generation Brenner potential (MTB-G2) is adopted in the calculations. Our MM calculations show fair agreement with quantum mechanical (QM) benchmarks, and indicate that one- and two-atom vacancies reduce the fracture strength of CNTs by $20%--33%$ (whereas the QM calculations predict $14%--27%$), but these fracture strengths are still much higher than the experimental data. We then demonstrate that this experimental and theoretical discrepancy can be attributed to the presence of large-scale defects, such as those that may arise from oxidative purification processes. Simulations on multiwalled CNTs and tubes twisted prior to tensile loading show negligible effects on the fracture strength, which indicates that these are not the causes of low experimental values. The effects of chirality and tube diameter on fracture strengths are also investigated. read less NOT USED (high confidence) Y. Ma and S. Garofalini, “Application of the Wolf damped Coulomb method to simulations of SiC.,” The Journal of chemical physics. 2005. link Times cited: 14 Abstract: A multibody interatomic potential is developed for bulk SiC … read moreAbstract: A multibody interatomic potential is developed for bulk SiC using a modification of the Wolf et al. summation technique [D. Wolf, P. Keblinski, S. R. Phillpot, and J. Eggebrecht, J. Chem. Phys. 110, 8254 (1999)] for the electrostatic interaction. The technique is modified to account for the short-range nonpoint charge effect. The nonelectrostatic interaction is modeled by a simple Morse-stretch term. This potential is then applied to beta-SiC to calculate various bulk properties using molecular dynamics simulations. The simulated x-ray diffraction pattern, radial distribution functions, lattice constant, elastic constants, and defect energy agree well with experimental data. read less NOT USED (high confidence) L. Raff, M. Malshe, M. Hagan, D. I. Doughan, M. Rockley, and R. Komanduri, “Ab initio potential-energy surfaces for complex, multichannel systems using modified novelty sampling and feedforward neural networks.,” The Journal of chemical physics. 2005. link Times cited: 120 Abstract: A neural network/trajectory approach is presented for the de… read moreAbstract: A neural network/trajectory approach is presented for the development of accurate potential-energy hypersurfaces that can be utilized to conduct ab initio molecular dynamics (AIMD) and Monte Carlo studies of gas-phase chemical reactions, nanometric cutting, and nanotribology, and of a variety of mechanical properties of importance in potential microelectromechanical systems applications. The method is sufficiently robust that it can be applied to a wide range of polyatomic systems. The overall method integrates ab initio electronic structure calculations with importance sampling techniques that permit the critical regions of configuration space to be determined. The computed ab initio energies and gradients are then accurately interpolated using neural networks (NN) rather than arbitrary parametrized analytical functional forms, moving interpolation or least-squares methods. The sampling method involves a tight integration of molecular dynamics calculations with neural networks that employ early stopping and regularization procedures to improve network performance and test for convergence. The procedure can be initiated using an empirical potential surface or direct dynamics. The accuracy and interpolation power of the method has been tested for two cases, the global potential surface for vinyl bromide undergoing unimolecular decomposition via four different reaction channels and nanometric cutting of silicon. The results show that the sampling methods permit the important regions of configuration space to be easily and rapidly identified, that convergence of the NN fit to the ab initio electronic structure database can be easily monitored, and that the interpolation accuracy of the NN fits is excellent, even for systems involving five atoms or more. The method permits a substantial computational speed and accuracy advantage over existing methods, is robust, and relatively easy to implement. read less NOT USED (high confidence) P. Erhart and K. Albe, “Analytical potential for atomistic simulations of silicon, carbon, and silicon carbide,” Physical Review B. 2005. link Times cited: 462 Abstract: We present an analytical bond-order potential for silicon, c… read moreAbstract: We present an analytical bond-order potential for silicon, carbon, and silicon carbide that has been optimized by a systematic fitting scheme. The functional form is adopted from a preceding work {\}Phys. Rev. B 65, 195124 (2002) and is built on three independently fitted potentials for Si-Si, C-C, and Si-C interaction. For elemental silicon and carbon, the potential perfectly reproduces elastic properties and agrees very well with first-principles results for high-pressure phases. The formation enthalpies of point defects are reasonably reproduced. In the case of silicon stuctural features of the melt agree nicely with data taken from literature. For silicon carbide the dimer as well as the solid phases B1, B2, and B3 were considered. Again, elastic properties are very well reproduced including internal relaxations under shear. Comparison with first-principles data on point defect formation enthalpies shows fair agreement. The successful validation of the potentials for configurations ranging from the molecular to the bulk regime indicates the transferability of the potential model and makes it a good choice for atomistic simulations that sample a large configuration space. read less NOT USED (high confidence) K. Matsunaga and Y. Iwamoto, “Molecular Dynamics Study of Atomic Structure and Diffusion Behavior in Amorphous Silicon Nitride Containing Boron,” Journal of the American Ceramic Society. 2004. link Times cited: 81 Abstract: We have performed molecular dynamics simulations of amorphou… read moreAbstract: We have performed molecular dynamics simulations of amorphous Si3N4 containing boron (Si-B-N). We have examined short-range atomic arrangements and self-diffusion constants of amorphous Si-B-N systems with various boron contents. Our simulations show that boron atoms are threefold coordinated by nitrogen atoms and that nitrogen atoms are bonded to both silicon and boron atoms in the amorphous network of Si-B-N. Also, the self-diffusion constant of nitrogen in Si-B-N is much decreased compared with that in amorphous Si3N4. This suggests that boron is important in decreasing the mobility of atoms in amorphous Si-B-N, which may explain the improved thermal stability of amorphous Si-B-N relative to amorphous Si3N4 observed experimentally. read less NOT USED (high confidence) Y. Mo, M. Bazant, and E. Kaxiras, “Sulfur point defects in crystalline and amorphous silicon,” Physical Review B. 2004. link Times cited: 44 Abstract: We present first-principles calculations for the behavior of… read moreAbstract: We present first-principles calculations for the behavior of sulfur point defects in crystalline and amorphous silicon structures. By introducing the sulfur point defects at various representative positions in the samples, including substitutional and interstitial sites in the crystal and fourfold coordinated or miscoordinated sites (dangling bond and floating bond sites ) in the amorphous, we analyze the energetics in detail and determine the most stable structures. Two important conclusions we draw are: (a) in crystalline Si, the S defects form pairs in which the two S atoms are energetically bound but not covalently bonded; (b) in amorphous Si, they preferentially occupy threefold coordinated sites, even when the starting configuration has higher coordination (four- or fivefold). The implications of these results for the electronic structure of sulfur-doped Si samples are also analyzed in the context of the present calculations. read less NOT USED (high confidence) J. Hsieh, S. Ju, S.-H. Li, and C. Hwang, “Temperature dependence in nanoindentation of a metal substrate by a diamondlike tip,” Physical Review B. 2004. link Times cited: 33 Abstract: In this investigation, we simulated the nanoindentation of a… read moreAbstract: In this investigation, we simulated the nanoindentation of a copper substrate by a diamondlike tip, using molecular dynamics method. A series of simulations according to distinct system temperatures were performed to analyze the temperature dependences of some important physical quantities occurring in the indentation. We found that the maximal normal forces on the tip atoms, both the repulsive and the attractive, the elastic modulus of the indentation system and the network done by the tip during the indentation cycle all decrease with increasing system temperature. By these dependences, we then identified the critical temperature for the transition of plastic flow mechanism in the substrate. The evolution of the crystalline structure in the substrate was analyzed by examining the variation of the structure factor, which measures the perfection of the crystalline structure, during the indentation cycle. An important physical quantity is the difference between the equilibrium absolute values of structure factor before and after the indentation, which can be used to measure the permanent deformation in the substrate produced by the indentation. We found that the difference increases with increasing temperature if the system temperature is below the critical temperature. read less NOT USED (high confidence) T. Hawa and M. Zachariah, “Internal pressure and surface tension of bare and hydrogen coated silicon nanoparticles.,” The Journal of chemical physics. 2004. link Times cited: 62 Abstract: We present a study of internal pressure and surface tension … read moreAbstract: We present a study of internal pressure and surface tension of bare and hydrogen coated silicon nanoparticles of 2-10 nm diameter as a function of temperature, using molecular dynamics simulations employing a reparametrized Kohen-Tully-Stillinger interatomic potential. The internal pressure was found to increase with decreasing particle size but the density was found to be independent of the particle size. We showed that for covalent bond structures, changes in surface curvature and the associated surface forces were not sufficient to significantly change bond lengths and angles. Thus, the surface tension was also found to be independent of the particle size. Surface tension was found to decrease with increasing particle temperature while the internal pressure did not vary with temperature. The presence of hydrogen on the surface of a particle significantly reduces surface tension (e.g., drops from 0.83 J/m(2) to 0.42 J/m(2) at 1500 K). The computed pressure of bare and coated particles was found to follow the classical Laplace-Young equation. read less NOT USED (high confidence) J. Kang and H. Hwang, “Nanoscale carbon nanotube motor schematics and simulations for micro-electro-mechanical machines,” Nanotechnology. 2004. link Times cited: 92 Abstract: We investigated nanoscale engine schematics composed of a ca… read moreAbstract: We investigated nanoscale engine schematics composed of a carbon nanotube oscillator, motor, channel, nozzle, etc. For the fluidic gas driven carbon nanotube motor, the origination of the torque was the friction between the carbon nanotube surface and the fluidic gases. The density and flow rate of the working gas or liquid are very important for the carbon nanotube motor. When multi-wall carbon nanotubes with very low rotating energy barriers are used for carbon nanotube motors, the fluidic gas driven carbon nanotube motors can be effectively operated and controlled by the gas flow rates. The variations of the flux were the same as the variations of the carbon nanotube oscillator. Although the carbon nanotube oscillator continually vibrated, since the angular velocity of the motor was saturated at a constant value, the speed of the nanoscale engine could be controlled by the frequency of the carbon nanotube oscillator below the maximum speed. read less NOT USED (high confidence) B. Li, J. Wang, L. Wang, and G. Zhang, “Anomalous heat conduction and anomalous diffusion in nonlinear lattices, single walled nanotubes, and billiard gas channels.,” Chaos. 2004. link Times cited: 78 Abstract: We study anomalous heat conduction and anomalous diffusion i… read moreAbstract: We study anomalous heat conduction and anomalous diffusion in low-dimensional systems ranging from nonlinear lattices, single walled carbon nanotubes, to billiard gas channels. We find that in all discussed systems, the anomalous heat conductivity can be connected with the anomalous diffusion, namely, if energy diffusion is sigma(2)(t)=2Dt(alpha) (0 1) implies an anomalous heat conduction with a divergent thermal conductivity (beta>0), and more interestingly, a subdiffusion (alpha<1) implies an anomalous heat conduction with a convergent thermal conductivity (beta<0), consequently, the system is a thermal insulator in the thermodynamic limit. Existing numerical data support our theoretical prediction. read less NOT USED (high confidence) M. Okuniewski, Y. Ashkenazy, B. Heuser, and R. Averback, “Molecular dynamics simulations of void and helium bubble stability in amorphous silicon during heavy-ion bombardment,” Journal of Applied Physics. 2004. link Times cited: 13 Abstract: A study of void and helium (He) bubble stability in amorphou… read moreAbstract: A study of void and helium (He) bubble stability in amorphous silicon (a-Si) subjected to heavy-ion bombardment was conducted with molecular dynamics simulations. The effects of incident ion energy, incident ion direction, and He pressure were investigated. He bubbles with pressures equal to or greater than 0.1kbar were found to be stable during isotropic 2keV xenon (Xe) irradiation. Bubbles with pressures below this limit collapsed completely. On the other hand, voids and bubbles of all pressures were stable following unidirectional 2keV Xe bombardment. In this case, the voids and bubbles became elongated and resisted closure, a phenomenon attributed to the inability of liquid Si to wet the flat, low-curvature internal surfaces of the open-volume defect. The void closure rates varied from 55 to 180A∕dpa as the Xe projectile energy increased from 0.2keV to 2keV, respectively. An analytical model based on a viscous flow mechanism is presented to describe the behavior associated with the slowest closure rat... read less NOT USED (high confidence) S. Stuart, Y. Li, O. Kum, J. Mintmire, and A. Voter, “Reactive Bond-Order Simulations Using Both Spatial and Temporal Approaches to Parallelism,” Structural Chemistry. 2004. link Times cited: 11 NOT USED (high confidence) B. Ni, K.-H. Lee, and S. Sinnott, “A reactive empirical bond order (REBO) potential for hydrocarbon oxygen interactions,” Journal of Physics: Condensed Matter. 2004. link Times cited: 108 Abstract: The expansion of the second-generation reactive empirical bo… read moreAbstract: The expansion of the second-generation reactive empirical bond order (REBO) potential for hydrocarbons, as parametrized by Brenner and co-workers, to include oxygen is presented. This involves the explicit inclusion of C–O, H–O, and O–O interactions to the existing C–C, C–H, and H–H interactions in the REBO potential. The details of the expansion, including all parameters, are given. The new, expanded potential is then applied to the study of the structure and chemical stability of several molecules and polymer chains, and to modelling chemical reactions among a series of molecules, within classical molecular dynamics simulations. read less NOT USED (high confidence) J. Kang and H. Hwang, “Gigahertz actuator of multiwall carbon nanotube encapsulating metallic ions: molecular dynamics simulations,” Journal of Applied Physics. 2004. link Times cited: 59 Abstract: This paper demonstrates a gigahertz actuator based on multiw… read moreAbstract: This paper demonstrates a gigahertz actuator based on multiwall carbon nanotubes (CNT) encapsulating metallic ions using classical molecular-dynamics simulations. Our results for a vacant CNT oscillator were in good agreement with the results obtained from previous experiments, theories, and simulations. Encapsulated potassium ions accelerated by an applied external electric field could initialize a gigahertz actuator composed of a 7K+@CNT oscillator, in which a CNT encapsulates seven potassium ions. The energetics and operation of a vacant CNT oscillator were similar to those of the 7K+@CNT oscillator except for the binding energies, the correlated collisions, and the mass increase caused by the encapsulated ions. Since the total mass of the 7K+@CNT oscillator was slightly higher than that of the vacant CNT oscillator, the frequency of the vacant CNT oscillator was slightly higher than the frequency of the 7K+@CNT oscillator. The correlated collisions between the ions or between the CNT and the ions slig... read less NOT USED (high confidence) Y. Trushin et al., “Initial stages of the MBE growth of silicon carbide nanoclusters on a silicon substrate,” Technical Physics Letters. 2004. link Times cited: 4 NOT USED (high confidence) M. Salvador, J. Perlado, A. Mattoni, F. Bernardini, and L. Colombo, “Defect energetics of β-SiC using a new tight-binding molecular dynamics model,” Journal of Nuclear Materials. 2004. link Times cited: 19 NOT USED (high confidence) P. Sonnet and P. Kelires, “Physical origin of trench formation in Ge/Si(100) islands,” Applied Physics Letters. 2004. link Times cited: 29 Abstract: Monte Carlo simulations of stress buildup and relief shed li… read moreAbstract: Monte Carlo simulations of stress buildup and relief shed light onto the physical origin of trench formation in Ge∕Si(100) islands. By monitoring the stress evolution as the island grows layer by layer, we find that a trench is most likely being formed halfway during growth. The primary driving force for this phenomenon is the reduction of the concentrated stress below the edges of the island, but not the need to provide Si into it, as is widely believed. However, once the trench is formed, subsequent intermixing through it is enhanced, and nearly compensates for the stress in the island. read less NOT USED (high confidence) L. Shen and Z. Chen, “An investigation of the effect of interfacial atomic potential on the stress transition in thin films,” Modelling and Simulation in Materials Science and Engineering. 2004. link Times cited: 34 Abstract: In order to better understand the mechanisms of tungsten (W)… read moreAbstract: In order to better understand the mechanisms of tungsten (W) film delamination from the silicon (Si) substrate, a three-dimensional molecular dynamics (MD) simulation is being conducted to investigate the formation of residual stress during the film deposition process. For the purpose of simplicity, a Morse pair potential is proposed in this paper to simulate the interactions between W and Si atoms during the film deposition process. It appears from numerical solutions that the residual stress field in the W film is very sensitive to the W–Si interfacial potential model proposed for the MD simulation. By calibrating the controlling parameters in the interfacial potential model using the comparison between the simulated stresses and experimental data, the film stress transition from tension to compression during the film deposition process could be qualitatively simulated via the proposed simulation procedure. The numerical results presented in this paper provide a better insight into the effect of interfacial atomic potential on the stress transition in thin films. In addition, it can be seen from the MD simulation that there might exist a phase transition from the crystalline Si to amorphous W–Si structure to crystalline W around the interface area. Well-designed experiments are required to verify the simulation results. read less NOT USED (high confidence) J. Kang and H. Hwang, “Comparison of C60 encapsulations into carbon and boron nitride nanotubes,” Journal of Physics: Condensed Matter. 2004. link Times cited: 64 Abstract: This work, by means of molecular dynamics simulations, shows… read moreAbstract: This work, by means of molecular dynamics simulations, shows that the features of C60 encapsulation into boron nitride nanotubes (BNNTs) are similar to the features of that into carbon nanotubes (CNTs), whereas the encapsulating and the internal dynamics of the C60@BNNT are different from those of the C60@CNT. Since the C60 encapsulation into the BNNTs is energetically more stable than that into the CNTs and the suction force on the C60 molecule induced by the BNNTs is higher than that by the CNTs, the C60 encapsulation into the BNNT is achieved faster than that into the CNT. The internal dynamics of the C60 molecule inside the BNNT is also different from that inside the CNT, because the C60@CNT system includes only one long range interaction of C–C whereas the C60@BNNT system includes both C–B and C–N long range interactions. Because of the difference of the binding energies and the equilibrium distances between C–B and C–N, the C60 molecule frequently collided against the BNNT wall in molecular dynamics simulations. At low temperature, the energy dissipation of the C60@CNT system mainly occurred at both end edges of the CNT, where the C60 molecule is under restoring (or sucking-in) forces. Energy dissipation of the C60@BNNT resulted from collisions against the BNNT wall as well as at both end edges of the BNNT. read less NOT USED (high confidence) R. Wagner and E. Gulari, “Simulation of Ge’Si intermixing during heteroepitaxy,” Physical Review B. 2004. link Times cited: 26 Abstract: During epitaxial growth of Ge on Si~001!, intermixing can oc… read moreAbstract: During epitaxial growth of Ge on Si~001!, intermixing can occur between the deposited Ge and the Si substrate. We show that although Ge prefers to wet the surface, entropy drives some fraction into the underlying layers. We present a simple model of intermixing by equilibration of the top crystal layers in the absence of bulk diffusion. The equilibration is performed with a flexible lattice Monte Carlo simulation. Ultimately, intermixing leads to a temperature-dependent graded Ge concentration. The resulting evolution of chemical potential is consistent with the onset of islanding after 3‐ 4 monolayers of deposition. read less NOT USED (high confidence) P. Kelires, “A constrained-equilibrium Monte Carlo method for quantum dots—the problem of intermixing,” Journal of Physics: Condensed Matter. 2004. link Times cited: 8 Abstract: Islands grown during semiconductor heteroepitaxy are in a th… read moreAbstract: Islands grown during semiconductor heteroepitaxy are in a thermodynamically metastable state. Experiments show that diffusion at the surface region, including the interior of the islands, is fast enough to establish local equilibrium. I review here applications of a Monte Carlo method which takes advantage of the quasi-equilibrium nature of quantum dots and is able to address the issue of intermixing and island composition. Both Ge islands grown on the bare Si(100) surface and C-induced Ge islands grown on Si(100) precovered with C are discussed. In the bare case, the interlinking of the stress field with the composition is revealed. Both are strongly inhomogeneous. In the C-induced case, the interplay of strain and chemical effects is the dominant key factor. Islands do not contain C under any conditions of coverage and temperature. read less NOT USED (high confidence) W. Moon and H. Hwang, “Molecular-dynamics simulation of structure and thermal behaviour of boron nitride nanotubes,” Nanotechnology. 2004. link Times cited: 89 Abstract: We investigate the structure and thermal behaviour of boron … read moreAbstract: We investigate the structure and thermal behaviour of boron nitride (BN) nanotubes using molecular-dynamics simulations based on the Tersoff-like potential. The strain energy decreases with increasing diameter, which is proportional to the inverse square of the tube diameter on the basis of continuum elastic theory. The disintegration temperature of zigzag nanotubes is smaller than that of armchair nanotubes of nearly the same diameter and increases with increasing diameter due to the decrease in strain energy. Despite homoelemental bonds, the Stone–Wales (SW) defect is found in BN nanotubes during thermal treatment. The formation energy of the SW defect increases with increasing tube diameter. These results agree well with the trend for carbon nanotubes. read less NOT USED (high confidence) P. Jensen, A. Clement, and L. J. Lewis, “Diffusion of nanoclusters,” Computational Materials Science. 2004. link Times cited: 19 NOT USED (high confidence) S. Kapur, M. Prasad, and T. Sinno, “Carbon-Mediated Aggregation of Self-Interstitials in Silicon.” 2004. link Times cited: 12 Abstract: The carbon-mediated aggregation of silicon self-interstitial… read moreAbstract: The carbon-mediated aggregation of silicon self-interstitials is investigated with large-scale parallel molecular dynamics. The presence of carbon in the silicon matrix is shown to lead to concentration-dependent self-interstitial cluster pinning, dramatically reducing cluster coalescence and thereby inhibiting the nucleation process. The extent of cluster pinning increases with cluster size for the range of cluster sizes observed in the simulation. The direct effect of carbon on single self-interstitials is shown to be of secondary importance, and the concentration of single self-interstitials as a function of time is essentially unchanged in the presence of carbon. A quasi-single-component mean-field interpretation of the atomistic simulation results is proposed and further confirms these conclusions. Based on these results, it is suggested that the experimentally observed effect of carbon on transient-enhanced diffusion of boron could be due to the direct interaction between carbon atoms and self-interstitial clusters. read less NOT USED (high confidence) I. Remediakis, C. Guedj, P. Kelires, D. Grützmacher, and E. Kaxiras, “Modeling of the carbon-rich c(4 · 4) reconstruction on Si(1 0 0),” Surface Science. 2004. link Times cited: 5 NOT USED (high confidence) K. Scheerschmidt and V. Kuhlmann, “Molecular Dynamics Investigation of Bonded Twist Boundaries,” Interface Science. 2004. link Times cited: 4 NOT USED (high confidence) G. Zhang and B. Li, “Anomalous vibrational energy diffusion in carbon nanotubes.,” The Journal of chemical physics. 2004. link Times cited: 282 Abstract: We study the vibrational energy diffusion in single-walled c… read moreAbstract: We study the vibrational energy diffusion in single-walled carbon nanotubes by using the molecular-dynamics method. It is found that energy transports ballistically at low temperature and superdiffusively at room temperature. The velocity of energy transport along the axis in carbon nanotube at room temperature is about 0.10 A/fs. It is also found that energy transport in carbon nanotube is different from that one in one-dimensional carbon lattice with the same interaction potential. read less NOT USED (high confidence) J. Kang and H. Hwang, “Fullerene nano ball bearings: an atomistic study,” Nanotechnology. 2004. link Times cited: 57 Abstract: We investigated fullerene and metallofullerene nano ball bea… read moreAbstract: We investigated fullerene and metallofullerene nano ball bearings using classical molecular dynamics and steepest descent methods based on both the Tersoff–Brenner and the Lennard-Jones 12–6 potentials. Under hydrostatic pressures, the bulk modulus and the ultimate pressure of K @C60 were higher than those of C60. While C60 rolling dynamics were the same as K @C60 rolling dynamics, the sustaining pressure of K @C60 intercalated between layers was higher than that of C60 intercalated between layers. In molecular dynamics simulations of C60 and K @C60 rolling motions, periodic variations of the frictional forces were found and the mean dynamical frictional forces were almost zero. We were able to conclude that K @C60 was more effective than C60 for the application of nano ball bearings. read less NOT USED (high confidence) M. Posselt, F. Gao, W. J. Weber, and V. Belko, “A comparative study of the structure and energetics of elementary defects in 3C- and 4H-SiC,” Journal of Physics: Condensed Matter. 2004. link Times cited: 34 Abstract: The potential non-equivalent defects in both 3C- and 4H-SiC … read moreAbstract: The potential non-equivalent defects in both 3C- and 4H-SiC are classified by a new method that is based on symmetry considerations. In 4H-SiC their number is considerably higher than in 3C-SiC, since the hexagonal symmetry leads to diversification. The different theoretical methods hitherto used to investigate defects in 3C-SiC are critically reviewed. Classical MD simulations with a recently developed interatomic potential are employed to investigate the stability, structure and energetics of the large number of non-equivalent defects that may exist in 4H-SiC. Most of the potential defect configurations in 4H-SiC are found to be stable. The interstitials between hexagonal and trigonal rings, which do not exist in 3C-SiC, are characteristic for 4H-SiC and other hexagonal polytypes. The structure and energetics of some complex and anisotropic dumbbells depend strongly on the polytype. On the other hand, polytypism does not have a significant influence on the properties of the more compact and isotropic defects, such as vacancies, antisites, hexagonal interstitials, and many dumbbells. The results allow conclusions to be drawn about the energy hierarchy of the defects. read less NOT USED (high confidence) Z. Yao, J.-S. Wang, B. Li, and G.-rong Liu, “Thermal conduction of carbon nanotubes using molecular dynamics,” Physical Review B. 2004. link Times cited: 131 Abstract: The heat flux autocorrelation functions of carbon nanotubes … read moreAbstract: The heat flux autocorrelation functions of carbon nanotubes (CNTs) with different radius and lengths is calculated using equilibrium molecular dynamics. The thermal conductance of CNTs is also calculated using the Green-Kubo relation from the linear response theory. By pointing out the ambiguity in the cross section definition of single wall CNTs, we use the thermal conductance instead of conductivity in calculations and discussions. We find that the thermal conductance of CNTs diverges with the CNT length. After the analysis of vibrational density of states, it can be concluded that more low frequency vibration modes exist in longer CNTs, and they effectively contribute to the divergence of thermal conductance. read less NOT USED (high confidence) M. Bertolus, F. Finocchi, and P. Millié, “Investigating bonding in small silicon-carbon clusters: exploration of the potential energy surfaces of Si3C4, Si4C3, and Si4C4 using ab initio molecular dynamics.,” The Journal of chemical physics. 2004. link Times cited: 41 Abstract: A theoretical investigation of the properties of the Si3C4, … read moreAbstract: A theoretical investigation of the properties of the Si3C4, Si4C3, and Si4C4 clusters is reported. Systematic explorations of the potential energy surfaces of the three clusters are performed using a combination of ab initio molecular dynamics and local energy minimizations using density functional theory. A large number of isomers with a large variety of geometries has been found. The geometries, energies, and vibrational frequencies yielded are discussed. Furthermore, a quantitative analysis of the interatomic distances, angles, and coordination numbers observed, as well as the conclusions on the bonding properties, are presented. The cluster properties are then compared to those of solid SiC and of the smaller Si-C clusters (with size up to 6) obtained in a previous study. Analysis of our results and comparison with bulk properties show that even clusters as small as Si3C4, Si4C3, and Si4C4 exhibit properties similar to those of the amorphous bulk, in particular as for the structures and bonds formed by C atoms. read less NOT USED (high confidence) A. Grassi, G. Lombardo, R. Pucci, G. Angilella, F. Bartha, and N. H. March, “Stretched chemical bonds in Si6H6: a transition from ring currents to localized π-electrons?,” Chemical Physics. 2004. link Times cited: 8 NOT USED (high confidence) T. Hawa and M. Zachariah, “Molecular dynamics study of particle-particle collisions between hydrogen-passivated silicon nanoparticles,” Physical Review B. 2004. link Times cited: 39 Abstract: One of the significant challenges in the use of nanoparticle… read moreAbstract: One of the significant challenges in the use of nanoparticles is the control of primary particle size and extent of agglomeration when grown from the gas phase. In this paper we evaluate a possible strategy of surface passivation. Here the particle--particle interaction of hydrogen-surface-terminated silicon nanoparticles has been evaluated using molecular dynamics simulation. Nanoparticles of the size between 200 and 6400 silicon atoms at 300--1800 K were studied with a reparametrized Kohen-Tully-Stillinger empirical interatomic potential. A hydrogen monolayer is shown to prevent coalescence between particles under thermal collision conditions. The critical approach energy for coalescence was found to increase with increasing particle size but decreases with increasing temperature. Both solid and liquid droplets were seen to bounce at thermal energies, and in some cases, ``superelastic'' collisions are observed, where the rebound kinetic energy of the droplet is higher than the approach energy. These results suggest that surface coatings can significantly retard nanoaerosol growth. read less NOT USED (high confidence) S. Sriraman, E. Aydil, and D. Maroudas, “Growth and characterization of hydrogenated amorphous silicon thin films from SiH2 radical precursor: Atomic-scale analysis,” Journal of Applied Physics. 2004. link Times cited: 21 Abstract: Molecular-dynamics (MD) simulations of hydrogenated amorphou… read moreAbstract: Molecular-dynamics (MD) simulations of hydrogenated amorphous silicon (a-Si:H) film growth on an initially H-terminated Si(001)-(2×1) substrate at T=500 K was studied through repeated impingement of SiH2 radicals to elucidate the effects of this species on the structural quality of the deposited films. A detailed analysis of the radical–surface interaction trajectories revealed the important reactions contributing to film growth. These reactions include (i) adsorption of SiH2 onto the deposition surface, (ii) insertion of SiH2 into surface Si–Si bonds, (iii) surface dimerization of adsorbed SiH2 groups, (iv) formation of polysilane chains and islands, (SiH2)n, n⩾2, on the surface, (v) formation of higher surface hydrides through the exchange of hydrogen, and (vi) dangling-bond-mediated dissociation of surface hydrides. The MD simulations of a-Si:H film growth predict an overall surface reaction probability of 39% for the SiH2 radical. Structural and chemical characterization of the deposited films was car... read less NOT USED (high confidence) J. Kang and H. Hwang, “Electro-Fluidic Shuttle Memory Device: Classical Molecular Dynamics Study,” arXiv: Materials Science. 2003. link Times cited: 23 Abstract: We investigated the internal dynamics of several electro-flu… read moreAbstract: We investigated the internal dynamics of several electro-fluid shuttle memory elements, consisting of several media encapsulated in C640 nanocapsule. The systems proposed were (i) bucky shuttle memory devices (C36+ @C420 and C60+ @C420), (ii) encapsulated-ions shuttle memory devices ((13+)@C420, (3+ -C60-2+ )@C640 and (5+ -C60)@C640) and (iii) endo-fullerenes shuttle memory devices ((K+ @C60- F-@C60)@C640). Energetics and operating responses of several electro-fluidic shuttle memory devices, such as transitions between the two states of the C640 capsule, were examined by classical molecular dynamics simulations of the shuttle media in the C640 capsule under the external force fields. The operating force fields for the stable operations of the shuttle memory device were investigated. read less NOT USED (high confidence) R. Ruoff, D. Qian, and W. K. Liu, “Mechanical properties of carbon nanotubes: theoretical predictions and experimental measurements,” Comptes Rendus Physique. 2003. link Times cited: 647 NOT USED (high confidence) C. Ciobanu, D. Tambe, and V. Shenoy, “Comparative study of dimer-vacancies and dimer-vacancy lines on Si(001) and Ge(001),” Surface Science. 2003. link Times cited: 11 NOT USED (high confidence) J. Godet, L. Pizzagalli, S. Brochard, and P. Beauchamp, “Comparison between classical potentials and ab initio methods for silicon under large shear,” Journal of Physics: Condensed Matter. 2003. link Times cited: 47 Abstract: The homogeneous shear of the {111} planes along the directio… read moreAbstract: The homogeneous shear of the {111} planes along the direction of bulk silicon has been investigated using ab initio techniques, to better understand the strain properties of both shuffle and glide set planes. Similar calculations have been done with three empirical potentials, Stillinger–Weber, Tersoff and EDIP, in order to find the one giving the best results under large shear strains. The generalized stacking fault energies have also been calculated with these potentials to complement this study. It turns out that the Stillinger–Weber potential better reproduces the ab initio results, for the smoothness and the amplitude of the energy variation as well as the localization of shear in the shuffle set. read less NOT USED (high confidence) P. A. Marcos, J. Alonso, L. M. Molina, Á. Rubio, and M. J. López, “Structural and thermal properties of silicon-doped fullerenes,” Journal of Chemical Physics. 2003. link Times cited: 33 Abstract: Extensive Molecular Dynamics simulations have been performed… read moreAbstract: Extensive Molecular Dynamics simulations have been performed to investigate the structural and thermal properties of Si-doped fullerenes containing one and two silicon atoms. Both, a many-body potential and ab initio Density Functional Theory (DFT) have been used to investigate the structural features of the heterofullerenes. The competition between the exohedral and the substitutional types of doping, as a function of fullerene size (both even and odd heterofullerenes have been considered) and Si concentration, is analyzed. The DFT calculations confirm the main structural trends obtained with the many-body potential. The thermal stability and the structural transformations of the heterofullerenes have been also studied as a function of temperature (T=0–5000 K). The structural transformations include, local rearrangement of atoms, isomerization transitions, diffusion of atoms, eventual destruction of the cage, and sublimation of atoms. The isomerization transition between exohedral and substitutional isom... read less NOT USED (high confidence) C. Tzoumanekas and P. Kelires, “Strain-driven composition gradients in nanocrystalline SiGe,” Applied Physics Letters. 2003. link Times cited: 3 Abstract: Monte Carlo simulations shed light onto the structure and co… read moreAbstract: Monte Carlo simulations shed light onto the structure and composition of nanocrystalline SiGe. A strong enhancement of Ge content in nanocrystals is found, driven by the stress gradient between the crystalline and amorphous components of the network. For a stoichiometric amorphous matrix and for small nanocrystals, typically 4 nm in diameter, the Ge content in the nanocrystals reaches ∼80%. The composition gradient declines with increasing size. The nanocrystals consist of a large ordered Ge-rich core and an outer less-ordered region where alloying is enhanced. read less NOT USED (high confidence) C. R. Miranda, R. W. Nunes, and A. Antonelli, “Temperature effects on dislocation core energies in silicon and germanium,” Physical Review B. 2003. link Times cited: 14 Abstract: Temperature effects on the energetics of the 90° partial dis… read moreAbstract: Temperature effects on the energetics of the 90° partial dislocation in silicon and germanium are investigated, using nonequilibrium methods to estimate free energies, coupled with Monte Carlo simulations. Atomic interactions are described by Tersoff and environment-dependent interatomic potentials. Our results indicate that the vibrational entropy has the effect of increasing the difference in free energy between the two possible reconstructions of the 90° partial, namely, the single-period and the double-period geometries. This effect further increases the energetic stability of the double-period reconstruction at high temperatures. The results also indicate that anharmonic effects may play an important role in determining the structural properties of these defects in the high-temperature regime. read less NOT USED (high confidence) A. C. Sparavigna, “Role of nonpairwise interactions on phonon thermal transport,” Physical Review B. 2003. link Times cited: 15 Abstract: In this paper, the phonon system for a perfect silicon latti… read moreAbstract: In this paper, the phonon system for a perfect silicon lattice is obtained by means of a model considering a phenomenological potential that includes both two- and three-body contributions. Phonon dispersions are discussed, and anharmonic contributions to the phonon Hamiltonian are evaluated. The model is compared with a model involving a pairwise potential, previously used by the author in the calculation of silicon thermal conductivity. The equation of motion is solved for both models, obtaining phonon dispersions practically indistinguishable and in good agreement with the experimental data. The role of nonpairwise interactions in phonon-phonon-scattering processes, relevant for the calculation of thermal conductivity, is then discussed. The thermal conductivity obtained with the present model including two- and three-body interactions has a good agreement with the experimental data, better than the one previously achieved with the model involving a central potential. read less NOT USED (high confidence) K. Satake and D. Graves, “Molecular dynamics simulation of ion bombardment on hydrogen terminated Si(001)2×1 surface,” Journal of Vacuum Science and Technology. 2003. link Times cited: 13 Abstract: Molecular dynamics simulations were performed to investigate… read moreAbstract: Molecular dynamics simulations were performed to investigate H2+ and SiH3+ ion bombardment of hydrogen terminated Si(001)2×1 surfaces. Normal incidence ion bombardment effects on dangling bond generation, adatom diffusion, and nucleation were studied as a function of incident energy between 10 and 40 eV. The dangling bond generation rate due to H2+ impacts at 20 and 40 eV was about twice that of SiH3+. However these effects appeared to be insignificant compared to probable neutral radical effects under typical plasma-enhanced chemical vapor deposition conditions. The enhanced diffusion of Si adatoms due to ion bombardment was observed to be minor in comparison with thermal diffusion and the disruption of ledge sites due to SiH3+ ion bombardment is not significant, with ion incident energies up to 40 eV. Ion bombardment in the incident energy range between 10 and 20 eV can contribute the modification of surface kinetics without bulk damage. read less NOT USED (high confidence) T. Itami et al., “Structure of liquid Sn over a wide temperature range from neutron scattering experiments and first-principles molecular dynamics simulation : A comparison to liquid Pb,” Physical Review B. 2003. link Times cited: 74 Abstract: The structure of liquid Sn was studied by neutron scattering… read moreAbstract: The structure of liquid Sn was studied by neutron scattering experiments in the widest temperature range that was ever performed. Though, on increasing temperature, the existence of the shoulder in the structure factor, $S(Q),$ becomes less clear in the change of the overall shape of the $S(Q),$ the structure related to this shoulder seems to be present even at 1873 K. The first-principle molecular-dynamics (FPMD) simulation was performed for the first time for liquid Sn by using the cell size of 64 particles. The calculated results well reproduced $S(Q)$ obtained by the neutron experiments. The angle distribution, ${g}^{(3)}(\ensuremath{\theta}{,r}_{c}),$ was evaluated for the angle between vectors from centered atom to other two atoms in spheres of cutoff radii ${r}_{c}\mathrm{'}\mathrm{s}.$ The ${g}^{(3)}(\ensuremath{\theta}{,r}_{c})$ shows that, with the decrease of ${r}_{c}$ from 0.4 to 0.3 nm, a rather sharp peak around 60 \ifmmode^\circ\else\textdegree\fi{} disappears and only a broad peak around 100 \ifmmode^\circ\else\textdegree\fi{} remains; the former peak may be derived from the feature of the closely packed structures and the latter one is close to the tetrahedral angle of 109 \ifmmode^\circ\else\textdegree\fi{}. In addition, the coordination number, n, of liquid Sn counted within the sphere of ${r}_{c}=0.3\mathrm{nm}$ is found to be 2--3 and does not change with the increase of temperature even up to 1873 K. These facts indicate that at least the fragment of the tetrahedral unit may be essentially kept even at 1873 K for liquid Sn. For comparison, the FPMD simulation was performed for the first time also for liquid Pb. No sign of the existence of the tetrahedral structure was observed for liquid Pb. Unfortunately, the self-diffusion coefficients, $D\mathrm{'}\mathrm{s},$ obtained from this FPMD for liquid Sn do not agree with those obtained by the microgravity experiments though the structure factors, $S(Q)\mathrm{'}\mathrm{s},$ are well reproduced. To remove the limitation of the small cell size of the FPMD, the classical molecular-dynamics simulations with a cell size of 2197 particles were performed by incorporating the present experimental structural information of liquid Sn. Obtained $D\mathrm{'}\mathrm{s}$ are in good agreement with the microgravity data. read less NOT USED (high confidence) C. Köhler, “Atomistic simulations of strain distributions in quantum dot nanostructures,” Journal of Physics: Condensed Matter. 2003. link Times cited: 6 Abstract: Strain distributions around a Ge quantum dot (QD) buried in … read moreAbstract: Strain distributions around a Ge quantum dot (QD) buried in a Si spacer layer are investigated theoretically by means of classical molecular dynamics simulations using the Tersoff potential. Applying periodic boundary conditions laterally, two-dimensional superlattices of QDs are obtained. Strain distributions in systems of different sizes and lattice misorientations are computed in order to explain possible vertical correlations in self-organized three-dimensional QD superstructures. Generally, the strain of relaxed systems displays an oscillatory behaviour as a function of the distance from the QD. For QD systems with growth direction [001], a simple fitting function is used to describe the strain along a vertical path above the QD by an oscillation and a decay according to a power law. For QDs with the shape of a truncated pyramid, the planar strain decays by a power of approximately −3. The period of the oscillation is nearly proportional to the QD superlattice constant and decreases with increasing coordination number of the QD superlattice. In misoriented systems with a small tilt angle about the [110] axis, the region of tensile planar strain above the QD is bent in the direction opposite to the misorientation causing a vertical correlation with lateral shift. For a tilt angle ≈55°, no strain oscillation is found which implies a perfect vertical correlation. read less NOT USED (high confidence) S. Stuart, J. Hicks, and M. T. Mury, “An Iterative Variable-timestep Algorithm for Molecular Dynamics Simulations,” Molecular Simulation. 2003. link Times cited: 8 Abstract: A method for performing variable-timestep molecular dynamics… read moreAbstract: A method for performing variable-timestep molecular dynamics integration is described, in which an iterative algorithm is used to select the largest timestep consistent with the desired simulation accuracy. Accuracy in this context is defined in terms of energy conservation, rather than trajectory correctness. Specifically, a timestep-independent measure of the rate of "diffusion" of the total energy is used. This variable timestep approach is compared to fixed-timestep integration for three different hydrocarbon systems (polyethylene, liquid benzene and ethylene), which are modeled with a reactive bond-order potential. These systems represent both equilibrium and highly non-equilibrium systems at temperatures ranging from 298 to 2500 K. The variable-timestep method is found to be approximately twice as computationally efficient as fixed-timestep integration for the non-equilibrium sputtering of polyethylene, and the two methods were competitive for the equilibrium systems. The algorithm requires the specification of two parameters controlling the rates of timestep growth and decay, but it is found that one set of values is appropriate for all three systems studied, and there is reason to believe that the parameters are transferable to other systems. The algorithm was developed specifically for simulations involving disparate timescales, such as are encountered with the reactive bond-order model used here, but it should also prove beneficial for a wide range of molecular dynamics applications. read less NOT USED (high confidence) F. Benkabou, M. Certier, and H. Aourag, “Elastic Properties of Zinc-blende G a N, A l N and I n N from Molecular Dynamics,” Molecular Simulation. 2003. link Times cited: 42 Abstract: Molecular dynamics calculations of the adiabatic elastic con… read moreAbstract: Molecular dynamics calculations of the adiabatic elastic constants of group III-Nitrides for temperatures ranging from 300 to 900 K have been performed. The results show good agreement with first-principles calculations. The moduli decreased with increasing temperature. The structural properties of zinc-blende GaN, AlN and InN are reported. Good agreement between the calculated and experimental values of the lattice constant, the cohesion energy, and the bulk modulus and its derivative are obtained. read less NOT USED (high confidence) U. Kaiser, J. Biskupek, and K. Gärtner, “’Magic-size’ GeSi and Si nanocrystals created by ion bombardment of hexagonal SiC; a molecular dynamics study,” Philosophical Magazine Letters. 2003. link Times cited: 5 Abstract: We recently showed that GeSi and Si nanocrystals created aft… read moreAbstract: We recently showed that GeSi and Si nanocrystals created after Ge- and Si-ion implantation into hexagonal SiC and subsequent annealing contain a high percentage of hexagonality. Here we demonstrate that the nanocrystals are of 'magic sizes' and are microtwinned. Both these features are explained by molecular dynamics calculations. read less NOT USED (high confidence) L. Pizzagalli, P. Beauchamp, and J. Rabier, “Stability and core structure of undissociated screw dislocations in group IV materials investigated by means of atomistic calculations,” Journal of Physics: Condensed Matter. 2002. link Times cited: 11 Abstract: We have examined the various possible configurations for an … read moreAbstract: We have examined the various possible configurations for an undissociated screw dislocation in group IV materials (Ge, Si, 3C-SiC, diamond) by means of semi-empirical atomistic calculations. A complete structural characterization and a determination of the relative stability are performed. We found that, in contrast to the case for Ge and Si, a geometry with the presence of sp 2 atoms in th ec ore is the most stable structure for 3C-SiC and diamond. This yields a stable screw dislocation configuration i nt he ‘shuffle’ set for Si and Ge, and in th e‘ glide’ set for 3C-SiC and diamond. read less NOT USED (high confidence) M. Tadic, F. Peeters, K. Janssens, M. Korkusinski, and P. Hawrylak, “Strain and band edges in single and coupled cylindrical InAs/GaAs and InP/InGaP self-assembled quantum dots,” Journal of Applied Physics. 2002. link Times cited: 72 Abstract: A comparative study is made of the strain distribution in cy… read moreAbstract: A comparative study is made of the strain distribution in cylindrical InAs/GaAs and InP/InGaP self-assembled quantum dots as obtained from isotropic elasticity theory, the anisotropic continuum mechanical model, and from atomistic calculations. For the isotropic case, the recently proposed approach [J. H. Davies, J. Appl. Phys. 84, 1358 (1998)] is used, while the finite-element method, the valence force field method, and Stillinger–Weber potentials are employed to calculate the strain in anisotropic structures. We found that all four methods result in strain distributions of similar shapes, but with notable quantitative differences inside the dot and near the disk–matrix boundary. The variations of the diagonal strains with the height of the quantum dot, with fixed radius, as calculated from all models, are almost linear. Furthermore, the energies of the band edges in the two types of quantum dots are extracted from the multiband effective-mass theory by inserting the strain distributions as obtained by t... read less NOT USED (high confidence) V. Deibuk and Y. Korolyuk, “Thermodynamic stability of bulk and epitaxial Ge1−xSnx semiconductor alloys,” Semiconductors. 2002. link Times cited: 4 NOT USED (high confidence) I. Jang, R. Phillips, and S. Sinnott, “Study of C3H5+ ion deposition on polystyrene and polyethylene surfaces using molecular dynamics simulations,” Journal of Applied Physics. 2002. link Times cited: 14 Abstract: Molecular dynamics simulations of ion deposition processes a… read moreAbstract: Molecular dynamics simulations of ion deposition processes are used to study the deposition of C3H5+ ions on crystalline polystyrene (PS) and polyethylene (PE) surfaces at energies of 50 and 25 eV. For each system, 80 trajectories are carried out on pristine surfaces and the incident angle in every case is normal to the surface. The forces are determined using the reactive empirical bond order method developed by Tersoff and parametrized for hydrocarbons by Brenner, coupled to long-range Lennard–Jones potentials. The simulations predict that the ions deposited at 50 eV either dissociate and stick to the surface or remain on the surface intact in 98% of the trajectories on PS, and in 89% of the trajectories on PE. At 25 eV, the ions are deposited intact in 70% of the trajectories on PS and dissociate in only 3%. No dissociation of the incident ions is predicted to occur on PE at 25 eV. Rather, the ions scatter away in 90% of the trajectories. Consequently, ion deposition on PE at 25 eV is predicted to be v... read less NOT USED (high confidence) C. Rountree, R. Kalia, E. Lidorikis, A. Nakano, L. Brutzel, and P. Vashishta, “ATOMISTIC ASPECTS OF CRACK PROPAGATION IN BRITTLE MATERIALS: Multimillion Atom Molecular Dynamics Simulations,” Annual Review of Materials Research. 2002. link Times cited: 173 Abstract: ▪ Abstract Atomistic aspects of dynamic fracture in a variet… read moreAbstract: ▪ Abstract Atomistic aspects of dynamic fracture in a variety of brittle crystalline, amorphous, nanophase, and nanocomposite materials are reviewed. Molecular dynamics (MD) simulations, ranging from a million to 1.5 billion atoms, are performed on massively parallel computers using highly efficient multiresolution algorithms. These simulations shed new light on (a) branching, deflection, and arrest of cracks; (b) growth of nanoscale pores ahead of the crack and how pores coalesce with the crack to cause fracture; and (c) the influence of these mechanisms on the morphology of fracture surfaces. Recent advances in novel multiscale simulation schemes combining quantum mechanical, molecular dynamics, and finite-element approaches and the use of these hybrid approaches in the study of crack propagation are also discussed. read less NOT USED (high confidence) K. Matsunaga, Y. Iwamoto, and Y. Ikuhara, “Atomic Structure and Diffusion in Amorphous Si-B-C-N by Molecular Dynamics Simulation,” Materials Transactions. 2002. link Times cited: 8 Abstract: We carried out molecular dynamics simulation of amorphous si… read moreAbstract: We carried out molecular dynamics simulation of amorphous silicon nitride containing boron and carbon, in order to investigate the short-range atomic arrangement and diffusion behavior. In amorphous Si–B–N, boron atoms are in a nearly threefold coordinated state with nitrogen atoms, while boron atoms in amorphous Si–B–C–N have bonding with both carbon and nitrogen atoms. Carbon atoms in Si–B–C–N are also bonded to silicon atoms. The self-diffusion constant of nitrogen in Si–B–N becomes much smaller than that in amorphous Si3N4. Also, amorphous Si–B–C–N exhibits smaller self-diffusion constants of constituent atoms, even compared to Si–B–N. Addition of boron and carbon is important in decreasing atomic mobility in amorphous Si–B–C–N. This may explain the increased thermal stability of the amorphous state observed experimentally. read less NOT USED (high confidence) S. Sriraman, E. Aydil, and D. Maroudas, “Atomic-scale analysis of deposition and characterization of a-Si: H thin films grown from SiH radical precursor,” Journal of Applied Physics. 2002. link Times cited: 14 Abstract: Growth of hydrogenated amorphous silicon films (a-Si:H) on a… read moreAbstract: Growth of hydrogenated amorphous silicon films (a-Si:H) on an initial H-terminated Si(001)(2×1) substrate at T=500 K was studied through molecular-dynamics (MD) simulations of repeated impingement of SiH radicals to elucidate the effects of reactive minority species on the structural quality of the deposited films. The important reactions contributing to film growth were identified through detailed visualization of radical–surface interaction trajectories. These reactions include (i) insertion of SiH into Si–Si bonds, (ii) adsorption onto surface dangling bonds, (iii) surface H abstraction by impinging SiH radicals through an Eley–Rideal mechanism, (iv) surface adsorption by penetration into subsurface layers or dissociation leading to interstitial atomic hydrogen, (v) desorption of interstitial hydrogen into the gas phase, (vi) formation of higher surface hydrides through the exchange of hydrogen, and (vii) dangling-bond-mediated dissociation of surface hydrides into monohydrides. The MD simulations of a... read less NOT USED (high confidence) V. Ivashchenko, “Atomic and electronic structure of a-SiC,” Semiconductor physics, quantum electronics and optoelectronics. 2002. link Times cited: 2 NOT USED (high confidence) V. Ivashchenko et al., “Gap states in a-SiC from optical measurements and band structure models,” Journal of Physics: Condensed Matter. 2002. link Times cited: 11 Abstract: Undoped and boron-doped a-Si1-xCx:H, for x≈0.5, films have b… read moreAbstract: Undoped and boron-doped a-Si1-xCx:H, for x≈0.5, films have been prepared by means of plasma-enhanced chemical-vapour deposition using methyltrichlorosilane. The optical absorption spectra of these films demonstrate three characteristic peaks at about 1.6, 2.0 and 2.5 eV consistent with other experimental measurements. To explain the observed peculiarities of the spectra, the atomic and electronic structures of a-SiC have been investigated using both molecular dynamics simulations based on an empirical potential and the recursion method. The results of the calculations show that five-coordinated (T5) atoms (floating-bond atoms), anomalous four-coordinated (T4a) sites (weak-bond atoms), three-coordinated (T3) defects (dangling-bond atoms) and normal four-coordinated (T4n) atoms which are nearest neighbours of T3, T4a or T5 atoms give rise to three gap peaks. It was established that three peaks in the low-energy region of the optical absorption spectra are due to the electronic transitions: the valence band → the empty gap peak and two occupied gap peaks → the conduction band. Boron doping effects upon the optical spectra was not revealed. read less NOT USED (high confidence) W. Sekkal and A. Zaoui, “Predictive study of thermodynamic properties of GeC,” New Journal of Physics. 2002. link Times cited: 47 Abstract: We present in this paper a molecular dynamics simulation of … read moreAbstract: We present in this paper a molecular dynamics simulation of structural and thermodynamic properties of the hypothetical IV-IV compound GeC in the zinc-blende structure. This study is performed with the use of the well-tested Tersoff potential. Various physical quantities including elastic constants, Debye temperature, thermal expansion coefficient, heat capacity, and Grüneisen parameter are predicted. The comparison with the corresponding results for SiC is also discussed. read less NOT USED (high confidence) D. Brenner, O. Shenderova, J. Harrison, S. Stuart, B. Ni, and S. Sinnott, “A second-generation reactive empirical bond order (REBO) potential energy expression for hydrocarbons,” Journal of Physics: Condensed Matter. 2002. link Times cited: 3204 Abstract: A second-generation potential energy function for solid carb… read moreAbstract: A second-generation potential energy function for solid carbon and hydrocarbon molecules that is based on an empirical bond order formalism is presented. This potential allows for covalent bond breaking and forming with associated changes in atomic hybridization within a classical potential, producing a powerful method for modelling complex chemistry in large many-atom systems. This revised potential contains improved analytic functions and an extended database relative to an earlier version (Brenner D W 1990 Phys. Rev. B 42 9458). These lead to a significantly better description of bond energies, lengths, and force constants for hydrocarbon molecules, as well as elastic properties, interstitial defect energies, and surface energies for diamond. read less NOT USED (high confidence) M. Ishimaru, “Atomistic simulations of structural relaxation processes in amorphous silicon,” Journal of Applied Physics. 2002. link Times cited: 36 Abstract: Structural relaxation processes in amorphous silicon (a-Si) … read moreAbstract: Structural relaxation processes in amorphous silicon (a-Si) have been examined by molecular-dynamics (MD) simulations using the Tersoff interatomic potential. The a-Si networks generated by rapid quenching from liquid Si were annealed. Structural changes due to the relaxation of a-Si networks were observed. The present MD simulations reproduce well experimental measurements of changes in radial distribution functions, static structure factors, bond angle distributions, and phonon densities of states due to structural relaxation. read less NOT USED (high confidence) A. Chehaidar, A. Zwick, and R. Carles, “Investigation of structural and chemical ordering in Si-rich amorphous SiC alloys via Raman spectroscopy and numerical modelling,” Journal of Physics: Condensed Matter. 2001. link Times cited: 10 Abstract: Short-range structural and chemical ordering in Si-rich chem… read moreAbstract: Short-range structural and chemical ordering in Si-rich chemically deposited a-Si1-xCx thin films have been investigated via Raman scattering and the numerical modelling technique. Raman spectra have been presented over a wide frequency range including both Stokes and anti-Stokes scattering. The interpretation of the spectra is performed in terms of the whole density of vibrational states. In order to determine the latter, the structure of the a-Si1-xCx (x<0.5) system has been modelled and the corresponding dynamical properties have been computed in the harmonic approximation using the valence-force-field model. By integrating the Stokes and anti-Stokes, first-order, and multiple-order processes, a fit of the experimental Raman spectra has been achieved. As expected, our analysis shows a tendency to chemical ordering into a tetrahedrally coordinated network for Si-rich alloys. Nevertheless, a total chemical ordering is not achieved since homonuclear C-C bonds coexist with Si-Si and Si-C ones in these alloy compounds. read less NOT USED (high confidence) R. Komanduri, N. Chandrasekaran, and L. Raff, “Molecular dynamics simulation of the nanometric cutting of silicon,” Philosophical Magazine B. 2001. link Times cited: 139 Abstract: Molecular dynamics simulations of nanometric cutting of sing… read moreAbstract: Molecular dynamics simulations of nanometric cutting of single-crystal, defect-free, pure silicon were performed using the Tersoff potential over a wide range of rake angles (from -60° to +60°), widths of cut (1.1 to 4.34 ran), depths of cut (0.01 to 2.72 nm) and clearance angles (10° to 30°) to hwestigate the nature of material removal and surface generation process in ultraprecision machining and grinding. The observed material removal mechanisms can be divided into four components: (i) compression of the work material ahead of the tool; (ii) chip formation akin to an extrusion-like process; (iii) side flow; and (iv) subsurface deformation in the machined surface. Unlike in conventional machining of most ductile materials, where no volume or phase change is observed in the plastic deformation process, significant volume changes (from 18.38 to 14.19Å3), resulting in a densification of about 23% occur owing to phase transition from a diamond cubic (or α-silicon) to a bet (or β-tin structure) in the case of machining silicon. Such a structural change is typical of silicon undergoing a pressure-induced phase transformation. The extent of structural changes and their contributions to each of the four material removal mechanisms depend on the tool rake angle and the width of cut. The ratio of the width of cut to depth of cut w/d is the primary factor affecting the extent of side flow and subsurface compression. The tool rake angle and the w/d ratio are found to be dominant factors affecting the chip flow and shear zone compression ahead of the tool. Subsurface or near-surface deformation was observed with all rake angles and all cut depths down to 0.01 nm, indicating the need for an alternate final polishing process such as chemomechanical polishing to produce defect-free surfaces of silicon on an atomie scale. read less NOT USED (high confidence) R. Devanathan, W. J. Weber, and F. Gao, “Atomic scale simulation of defect production in irradiated 3C-SiC,” Journal of Applied Physics. 2001. link Times cited: 207 Abstract: Molecular dynamics simulations using a modified Tersoff pote… read moreAbstract: Molecular dynamics simulations using a modified Tersoff potential have been used to study the primary damage state and statistics of defect production in displacement cascades in 3C-SiC. Recoils with energies from 0.25 to 50 keV have been simulated at 300 K. The results indicate that: (1) the displacement threshold energy surface is highly anisotropic; (2) the dominant surviving defects are C interstitials and vacancies; (3) the defect production efficiency decreases with increasing recoil energy; (4) defect clusters are much smaller and more sparse compared to those reported in metals; and (5) a small fraction of the surviving defects are antisite defects. read less NOT USED (high confidence) N. Combe, P. Jensen, and J. Barrat, “Stable unidimensional arrays of coherent strained islands,” Surface Science. 2001. link Times cited: 5 NOT USED (high confidence) S. Ramalingam, E. Aydil, and D. Maroudas, “Molecular dynamics study of the interactions of small thermal and energetic silicon clusters with crystalline and amorphous silicon surfaces,” Journal of Vacuum Science & Technology B. 2001. link Times cited: 9 Abstract: An atomic-scale analysis based on molecular dynamics simulat… read moreAbstract: An atomic-scale analysis based on molecular dynamics simulations of the interactions of small thermal and energetic SinHm, n>1, clusters observed in various plasmas with crystalline and amorphous Si surfaces is presented. The experimental literature has assumed and employed a unit reaction probability for clusters of various sizes on all Si surfaces in phenomenological models for obtaining hydrogenated amorphous Si film growth rates, while the reaction mechanisms of clusters with the deposition surfaces have remained unexplored. In addition, it is widely speculated that clusters have a detrimental effect on the film quality. Our study shows that the clusters react with high (>85%) probability with crystalline surfaces and with surfaces of amorphous Si films. The structure and energetics of the corresponding adsorbed cluster configurations on these surfaces are analyzed and discussed. Furthermore, the simulations provide insight into possible mechanisms for the formation of defects, such as voids and dangl... read less NOT USED (high confidence) T. Iwasaki and H. Miura, “Molecular dynamics analysis of adhesion strength of interfaces between thin films,” Journal of Materials Research. 2001. link Times cited: 57 Abstract: We have developed a molecular-dynamics technique for determi… read moreAbstract: We have developed a molecular-dynamics technique for determining the adhesion strength of the interfaces between different materials. This technique evaluates the adhesion strength by calculating the adhesive fracture energy defined as the difference between the total potential energy of the material-connected state and that of the material-separated state. The extended Tersoff-type potential is applied to calculate the adhesive fracture energy of metal/dielectric interfaces as well as metal/metal interfaces. We used the technique to determine the adhesion strength of the interfaces between ULSI-interconnect materials (Al and Cu) and diffusion-barrier materials (TiN and W). It was also applied to determine the adhesion strength of interfaces between the interconnect materials and a dielectric material (SiO_2). Because the adhesion strength determined by this technique agrees well with that measured by scratch testing, this technique is considered to be effective for determining the adhesion strength. read less NOT USED (high confidence) W. Sekkal and A. Zaoui, “Molecular dynamics simulation of superhard phases in RuO2,” Journal of Physics: Condensed Matter. 2001. link Times cited: 9 Abstract: We present a molecular dynamics simulation study of structur… read moreAbstract: We present a molecular dynamics simulation study of structural and thermodynamic properties of RuO2 in the fluorite and Pa structures. Based on a three-body potential, our results are in agreement with experimental measurements and other ab initio calculations. The transferability of this potential model is tested by simulating the superhard phases of RuO2 for varying temperature. Various thermodynamic properties including the Debye temperature, heat capacity, linear thermal coefficient, Gruneisen parameter, and melting point are predicted. Calculations are extended to simulate also the liquid phase of RuO2 in the Pa structure. read less NOT USED (high confidence) V. Deibuk and Y. Korolyuk, “Molecular-dynamics simulation of structural properties of Ge1−xSnx substitutional solid solutions,” Semiconductors. 2001. link Times cited: 3 NOT USED (high confidence) Y. Kikuchi, H. Sugii, and K. Shintani, “Strain profiles in pyramidal quantum dots by means of atomistic simulation,” Journal of Applied Physics. 2001. link Times cited: 72 Abstract: The minimum energy configurations of the atomic structure of… read moreAbstract: The minimum energy configurations of the atomic structure of a Ge island on a Si(001) substrate are calculated by using the conjugate gradient minimization of the potential energy of the system. The island is assumed to be covered or uncovered by a Si layer and assumed to be of pyramidal shape with the sidewalls of {110} or {105} facets; the base length of the island ranges from 5.43 to 10.9 nm. Two empirical potentials, the Keating and Stillinger–Weber potentials, are used. At the interfaces between the regions occupied by the atoms of different species, the potential parameters for such bondings are properly adopted. The strain profiles along the three selected paths within the structure and along the cap surface are calculated. While the profiles of the normal strain component exx obtained by the two potentials are in good agreement with each other except within the substrate and at the edges of the island in the uncovered structures, the two profiles of the normal strain component ezz show a considera... read less NOT USED (high confidence) H. Koga, Y. Nakamura, M. Watanabe, and T. Yoshida, “Molecular dynamics study of deposition mechanism of cubic boron nitride,” Science and Technology of Advanced Materials. 2001. link Times cited: 13 NOT USED (high confidence) T. Namazu, Y. Isono, and T. Tanaka, “Evaluation of size effect on mechanical properties of single crystal silicon by nanoscale bending test using AFM,” Journal of Microelectromechanical Systems. 2000. link Times cited: 369 Abstract: This paper describes a nanometer-scale bending test for a si… read moreAbstract: This paper describes a nanometer-scale bending test for a single crystal silicon (Si) fixed beam using an atomic force microscope (AFM). This research focuses on revealing the size effect on the mechanical property of Si beams ranging from a nano- to millimeter scale. Nanometer-scale Si beams, with widths from 200 to 800 nm and a thickness of 255 nm, were fabricated on an Si diaphragm by means of field-enhanced anodization using AFM and anisotropic wet etching. The efficient condition of the field-enhanced anodization could be obtained by changing the bias voltage and the scanning speed of the cantilever. Bending tests for micro- and millimeter-scale Si beams fabricated by a photolithography technique were also carried out using an ultraprecision hardness tester and scratch tester, respectively. Comparisons of Young's modulus and bending strength, of Si among the nano-, micro-, and millimeter scales showed that the specimen size did not have an influence on the Young's modulus in the [110] direction, whereas it produced a large effect on the bending strength. Observations of the fractured surface and calculations of the clack length from Griffith's theory made it clear that the maximum peak-to-valley distance of specimen surface caused the size effect on the bending strength. read less NOT USED (high confidence) C. Koitzsch, D. Conrad, K. Scheerschmidt, and U. Gösele, “Empirical molecular dynamic study of SiC(0001) surface reconstructions and bonded interfaces,” Journal of Applied Physics. 2000. link Times cited: 15 Abstract: Empirical molecular dynamics simulations based on the Tersof… read moreAbstract: Empirical molecular dynamics simulations based on the Tersoff potential are carried out for SiC(0001) surfaces and bonded interfaces. It is demonstrated that such a classical interatomic potential is able to correctly describe SiC-4H (0001)3×3 and 3×3R30° surface reconstructions. The surprising accuracy of the empirical simulations compared to results of density functional methods as well as experiments is demonstrated not only by obtaining reasonable structural parameters, but also by the correct prediction of such intricate effects like buckling in the topmost carbon layer of the 3×3 surface and polymerization in the silicon wetting layer of the 3×3 reconstruction. Because of the established good applicability of the Tersoff potential the simulations are used to predict the formation of SiC interfaces to be generated by wafer bonding and so far experimentally unobserved. It is shown that the bond energy crucially depends on the local atomic structure at the interface. The resulting bond energies range f... read less NOT USED (high confidence) K. Moriguchi et al., “Nano-tube-like surface structure in graphite particles and its formation mechanism: A role in anodes of lithium-ion secondary batteries,” Journal of Applied Physics. 2000. link Times cited: 37 Abstract: Nano-structures on the surface of graphite based carbon part… read moreAbstract: Nano-structures on the surface of graphite based carbon particles have been investigated by means of high resolution transmission electron microscopy. The surfaces consist of “closed-edge” structures in a similar manner as carbon nano-tube. That is, they are composed of coaxial carbon tubes consisting of adequate coupling of graphite layer edges. These graphite particles are chemically stable and, therefore, applicable for lithium-ion secondary battery anodes. Molecular dynamics simulations based on the Tersoff potential reveal that the vibrations of the graphite layers at the free edges play an important role in the formation of the closed-edge structures. In lithium-ion secondary batteries, Li ions can intrude into bulk carbon anodes through these closed-edge structures. In order to clarify this intrusion mechanism, we have studied the barrier potentials of Li intrusion through these closed edges using the first-principles cluster calculations. From electrochemical measurements, the carbon anodes compos... read less NOT USED (high confidence) W. Cheong and L. Zhang, “Molecular dynamics simulation of phase transformations in silicon monocrystals due to nano-indentation,” Nanotechnology. 2000. link Times cited: 319 Abstract: This paper discusses the phase transformation of diamond cub… read moreAbstract: This paper discusses the phase transformation of diamond cubic silicon under nano-indentation with the aid of molecular dynamics analysis using the Tersoff potential. By monitoring the positions of atoms within the model, the microstructural changes as silicon transforms from its diamond cubic structure to other phases were identified. The simulation showed that diamond cubic silicon transforms into a body-centred tetragonal form (β-silicon) upon loading of the indentor. The change of structure is accomplished by the flattening of the tetrahedron structure in diamond cubic silicon. Upon unloading, the body-centred tetragonal form transforms into an amorphous phase accompanied by the loss of long-range order of the silicon atoms. By performing a second indentation on the amorphous zone, it was found that the body-centred-tetragonal-to-amorphous phase transformation could be a reversible process. read less NOT USED (high confidence) C. Abrams and D. Graves, “Molecular dynamics simulations of Si etching with energetic F+: Sensitivity of results to the interatomic potential,” Journal of Applied Physics. 2000. link Times cited: 19 Abstract: Comparative analyses of molecular dynamics (MD) simulation s… read moreAbstract: Comparative analyses of molecular dynamics (MD) simulation studies of reactive ion etching of Si are presented. A recently developed empirical potential is used to model the Si–F system, and applied to the simulation of Si etching with energetic F+ at 10, 25 and 50 eV. These results are compared to those of a similar study using the Stillinger-Weber Si–F potential. This analysis leads to the expected result that different potentials lead to quantitatively different results with regard to Si etch yield, surface structure and composition, etching mechanisms, and product distributions. More importantly, however, it attests to the robustness of the qualitative nature of these results. The degree of qualitative agreement between systems studied with the two potentials is high enough for us to conclude that MD simulations have revealed valuable qualitative insights into the complicated system of reactive ion etching of Si. read less NOT USED (high confidence) X. Hu, K. Albe, and R. Averback, “Molecular-dynamics simulations of energetic C60 impacts on (2×1)-(100) silicon,” Journal of Applied Physics. 2000. link Times cited: 10 Abstract: Single impacts of energetic C60 clusters on (2×1)-(100) sili… read moreAbstract: Single impacts of energetic C60 clusters on (2×1)-(100) silicon substrates are studied by molecular-dynamics simulations. The role of impact energies and internal cluster energy are investigated in detail. Six different energy regimes can be identified at the end of the ballistic phase: At thermal energies below 20 eV the fullerene cages undergo elastic deformation, while impinging on the surface, and are mostly chemisorpted on top of the (2×1)-dimer rows. Between 20 and 100 eV the cage structure is preserved after the collision, but the cluster comes to rest within a few monolayers of the silicon surface. At energies of 100–500 eV the cluster partially decomposes and small coherent carbon caps are embedded in the surface. At higher energies up to 1.5 keV complete decomposition of the fullerene cluster occurs and an amorphous zone is formed in the subsurface area. At energies greater than approximately 1.5 keV craters form and above 6 keV sputtering becomes significant. In all cases the substrate temperat... read less NOT USED (high confidence) H. Jäger and K. Albe, “Molecular-dynamics simulations of steady-state growth of ion-deposited tetrahedral amorphous carbon films,” Journal of Applied Physics. 2000. link Times cited: 122 Abstract: Molecular-dynamics calculations were performed to simulate i… read moreAbstract: Molecular-dynamics calculations were performed to simulate ion beam deposition of diamond-like carbon films. Using the computationally efficient analytical potentials of Tersoff and Brenner we are able to simulate more than 103 carbon atom impacts on {111} diamond, so that steady-state film properties can be computed and analyzed. For the Tersoff potential, we achieve sp3 fractions approximately half of the experimentally observed values. For the more refined hydrocarbon potentials of Brenner the fraction of tetrahedrally coordinated atoms is much too low, even if structures with densities close to diamond are obtained. We show, that the sp3 contents calculated with Tersoff’s potential are an artifact related to the overbinding of specific bonding configurations between three- and fourfold coordinated sites. On the other hand, we can prove, that the range for the binding orbitals represented by the cutoff function is too short in Brenner’s parametrization. If an increased C–C interaction cutoff value is c... read less NOT USED (high confidence) R. Durikovic, “Visualization of large-scale atomic interactions during the melting and crystallization process,” 7th International Workshop on Computational Electronics. Book of Abstracts. IWCE (Cat. No.00EX427). 2000. link Times cited: 0 Abstract: The visualization and simulation of atomic-scale material mo… read moreAbstract: The visualization and simulation of atomic-scale material model capable of melting, crystallization and amorphization has been developed. The large-scale molecular-dynamics calculations are done to examine crystal growth and defect formation process from the melted silicon based on the ordinary Langevin equations of motion. The developed computer system enables interactive visualization of solid/liquid interface structures responding to the control parameters such as the temperature gradient and pulling speed. The particle objects representing up to 10/sup 4/ atoms, in an interactive 3D environment, model material behaviour. A particle in the proposed dynamic system interacts through attractive covalent forces and short-range repulsion forces. This research was conducted to understand the processes that can control the quality of single-crystal silicon grown from the melt by Czochralski crystal puller. read less NOT USED (high confidence) Scheerschmidt, Conrad, Kirmse, Schneider, and Neumann, “Electron microscope characterization of CdSe/ZnSe quantum dots based on molecular dynamics structure relaxations,” Ultramicroscopy. 2000. link Times cited: 20 NOT USED (high confidence) S. Stuart, A. B. Tutein, and J. Harrison, “A reactive potential for hydrocarbons with intermolecular interactions,” Journal of Chemical Physics. 2000. link Times cited: 3524 Abstract: A potential function is presented that can be used to model … read moreAbstract: A potential function is presented that can be used to model both chemical reactions and intermolecular interactions in condensed-phase hydrocarbon systems such as liquids, graphite, and polymers. This potential is derived from a well-known dissociable hydrocarbon force field, the reactive empirical bond-order potential. The extensions include an adaptive treatment of the nonbonded and dihedral-angle interactions, which still allows for covalent bonding interactions. Torsional potentials are introduced via a novel interaction potential that does not require a fixed hybridization state. The resulting model is intended as a first step towards a transferable, empirical potential capable of simulating chemical reactions in a variety of environments. The current implementation has been validated against structural and energetic properties of both gaseous and liquid hydrocarbons, and is expected to prove useful in simulations of hydrocarbon liquids, thin films, and other saturated hydrocarbon systems. read less NOT USED (high confidence) C. Abrams and D. Graves, “Molecular dynamics simulations of Si etching by energetic CF3,” Journal of Applied Physics. 1999. link Times cited: 83 Abstract: The development of a Tersoff-type empirical interatomic pote… read moreAbstract: The development of a Tersoff-type empirical interatomic potential energy function (PEF) for the Si–C–F system is reported. As a first application of this potential, etching of a:Si by CF3+ using molecular dynamics (MD) simulations is demonstrated. Aspects of CF3+ ion bombardment through a fluence of 4×1016 cm−2 are discussed, including overlayer composition and thickness, Si etch yields, and etch product distributions. The formation of a 1-nm-thick steady-state SixCyFz overlayer occurs in the simulation, and this layer is an active participant in the etching of the underlying Si. At an ion energy of 100 eV, a steady state the etch yield of Si is predicted to be 0.06±0.01 Si/ion. A comparison of the simulation findings and experimental results from the literature leads to the conclusion that the new PEF performs well in qualitatively modeling the atomic-scale processes involved in CF3+ ion beam etching of Si. Simulations of this kind yield insight into fluorocarbon etch mechanisms, and ultimately will resu... read less NOT USED (high confidence) W. Sekkal, A. Laref, A. Zaoui, H. Aourag, and M. Certier, “The Miscibility of Copper Halides Using a Three-Body Potential. I. CuCl x Br1−x Crystal,” Molecular Simulation. 1999. link Times cited: 3 Abstract: Mixed CuCl x Br1−x crystals are studied using a Tersoff pote… read moreAbstract: Mixed CuCl x Br1−x crystals are studied using a Tersoff potential. Structural and elastic properties of the solid solution are calculated and are in good agreement with experiments. Various thermodynamic quantities including thermal expansion coefficient, heat capacity, and Gruneisen coefficient are also predicted. read less NOT USED (high confidence) H.-P. Cheng, “Cluster-surface collisions: Characteristics of Xe55- and C20–Si[111] surface bombardment,” Journal of Chemical Physics. 1999. link Times cited: 14 Abstract: Molecular dynamics (MD) simulations are performed to study t… read moreAbstract: Molecular dynamics (MD) simulations are performed to study the cluster-surface collision processes. Two types of clusters, Xe55 and C20 are used as case studies of materials with very different properties. In studies of Xe55–Si[111] surface bombardment, two initial velocities, 5.0 and 10.0 km/s (normal to the surface) are chosen to investigate the dynamical consequences of the initial energy or velocity in the cluster-surface impact. A transition in the speed of kinetic energy propagation, from subsonic velocities to supersonic velocities, is observed. Energy transfer, from cluster translational motion to the substrate, occurs at an extremely fast rate that increases as the incident velocity increases. Local melting and amorphous layer formation in the surfaces are found via energetic analysis of individual silicon atoms. For C20, the initial velocity ranges from 10 to 100 km/s. The clusters are damaged immediately upon impact. Similar to Xe55, increase in the potential energy is larger than the increase ... read less NOT USED (high confidence) G. Krasko, “A New Virial-Theorem-Based Semi-Ab-Initio Method for Atomistic Simulations.” 1999. link Times cited: 0 Abstract: : A new semi-ab-initio method for atomistic simulations base… read moreAbstract: : A new semi-ab-initio method for atomistic simulations based on the virial theorem has been suggested. The method is completely within the realm of the density-functional theory and uses the so-called "reduced" electron spin-density functional (SDF). The crucial component of the method is the ansatz expressing (for both one-component and two-component systems) the electron density at point r as a superposition of "atomic" densities due to the neighboring atoms. The total energy of this system is shown to consist of three terms. The first depends only on the simulation volume and is independent of the atomic configuration. The second and third, like the embedded-atom method (EAM), are the interatomic pairwise interaction energy, and an "N-electron" term, which cannot be expressed as an interatomic interaction; it originates from the electron-correlation interaction. The atomic densities are constructed using a set of polynomial-exponential functions resulting in an analytic form for the pair interatomic potential. The coefficients in the atomic density expressions are found using a calibration procedure based on performing a series of ab-initio calculations for a few crystal modifications of this system. Success will depend on whether the charge density in a low-symmetry system under simulation will also be close to the true density obtainable from a meaningful ab-initio calculation; then, the simulation results would be identical to those of the corresponding ab-initio calculation. To what extent the superposition ansatz satisfies this condition is unclear without experimental confirmation. read less NOT USED (high confidence) S. Ramalingam, D. Maroudas, and E. Aydil, “Atomistic simulation study of the interactions of SiH3 radicals with silicon surfaces,” Journal of Applied Physics. 1999. link Times cited: 54 Abstract: SiH3 radicals created by electron impact dissociation of SiH… read moreAbstract: SiH3 radicals created by electron impact dissociation of SiH4 in reactive gas discharges are widely believed to be the dominant precursor for plasma deposition of amorphous and nanocrystalline silicon thin films. In this article, we present a systematic computational analysis of the interactions of SiH3 radicals with a variety of crystalline and amorphous silicon surfaces through atomistic simulations. The hydrogen coverage of the surface and, hence, the availability of surface dangling bonds has the strongest influence on the radical–surface reaction mechanisms and the corresponding reaction probabilities. The SiH3 radical reacts with unit probability on the pristine Si(001)-(2×1) surface which has one dangling bond per Si atom; upon reaction, the Si atom of the radical forms strong Si–Si bonds with either one or two surface Si atoms. On the H-terminated Si(001)-(2×1) surface, the radical is much less reactive; the SiH3 radical was reflected back into the gas phase in all but two of the 16 simulations of... read less NOT USED (high confidence) F. B. Mota, J. F. Justo, and A. Fazzio, “Hydrogen role on the properties of amorphous silicon nitride,” Journal of Applied Physics. 1999. link Times cited: 82 Abstract: We have developed an interatomic potential to investigate st… read moreAbstract: We have developed an interatomic potential to investigate structural properties of hydrogenated amorphous silicon nitride. The interatomic potential used the Tersoff functional form to describe the Si–Si, Si–N, Si–H, N–H, and H–H interactions. The fitting parameters for all these interactions were found with a set of ab initio and experimental results of the silicon nitride crystalline phase, and of molecules involving hydrogen. We investigated the structural properties of unhydrogenated and hydrogenated amorphous silicon nitride through Monte Carlo simulations. The results show that depending on the nitrogen content, hydrogen has a different chemical preference to bind to either nitrogen or silicon, which is corroborated by experimental findings. Besides, hydrogen incorporation reduced considerably the concentration of undercoordinated atoms in the material, and consequently the concentration of dangling bonds. read less NOT USED (high confidence) W. Sekkal, A. Zaoui, A. Laref, H. Aourag, and M. Certier, “Structural and thermodynamic properties of Cx(BN)1-x alloy,” Journal of Physics: Condensed Matter. 1999. link Times cited: 7 Abstract: In this work, structural and thermodynamic properties of C-B… read moreAbstract: In this work, structural and thermodynamic properties of C-BN solid solutions are investigated using the well tested Tersoff potential. The bulk modulus is lower than those of diamond and cubic BN and the value predicted from considering ideal mixing between C and BN. Various thermodynamics quantities including the thermal expansion coefficient, heat capacity, Debye temperature and Grüneisen coefficient are also predicted. read less NOT USED (high confidence) R. Sahara, H. Mizuseki, K. Ohno, S. Uda, T. Fukuda, and Y. Kawazoe, “Body-centered-cubic lattice model with many-body interactions representing the melting transition in Si,” Journal of Chemical Physics. 1999. link Times cited: 11 Abstract: A body-centered-cubic (BCC) lattice model with realistic man… read moreAbstract: A body-centered-cubic (BCC) lattice model with realistic many-body interactions is introduced and investigated by means of the Metropolis’ Monte Carlo method to describe both crystalline and molten states of Si. Under the simplest assumption that atoms surrounded by tetrahedral first-neighbors only have an energy lower than the other atoms, a clear first-order phase transition including hysteresis is observed between a solid with diamond structure and a melt. Nucleation and domain growth are dynamically observed in certain range of the supercooling. In order to introduce more realistic and accurate lattice-gas models, the Tersoff potential is renormalized and the interactions are mapped onto a BCC lattice. Then, it is found that the phase transition temperature and other thermodynamic properties are dramatically improved compared with the case using the Tersoff potential directly in the lattice model without renormalization. read less NOT USED (high confidence) Kirmse, Schneider, Scheerschmidt, Conrad, and Neumann, “TEM characterization of self‐organized CdSe/ZnSe quantum dots,” Journal of Microscopy. 1999. link Times cited: 10 Abstract: CdSe quantum dots (QDs) grown on ZnSe were investigated by v… read moreAbstract: CdSe quantum dots (QDs) grown on ZnSe were investigated by various transmission electron microscopy (TEM) techniques including diffraction contrast imaging, high‐resolution and analytical transmission electron microscopy both of plan‐view as well as cross‐section specimens. The size of the QDs ranges from about 5–50 nm, where from the contrast features in plan‐view imaging two classes can be differentiated. In the features of the smaller dots there is no inner fine structure resolvable. The larger ones exhibit contrast features of fourfold symmetry as expected for pyramid‐like islands. Corresponding simulations of diffraction contrast images of truncated CdSe pyramids with the edges of the basal plane orientated parallel to <100> are in relatively good agreement with this assumption. In TEM diffraction contrast imaging of cross‐section samples the locations of the quantum dots are visualized by additional dark contrast features. The QDs have a distinct larger extension in growth direction compared to the almost uniformly thick CdSe wetting layer. The presence of the CdSe QDs was also confirmed by energy‐dispersive X‐ray spectroscopy. read less NOT USED (high confidence) R. Durikovic and T. Motooka, “Modeling material behavior: molecular dynamics simulation and visualization,” Proceedings Shape Modeling International ’99. International Conference on Shape Modeling and Applications. 1999. link Times cited: 0 Abstract: We have developed atomic-scale material models capable of me… read moreAbstract: We have developed atomic-scale material models capable of melting, crystallization and amorphization. These deformable models feature molecular dynamics governed by Langevin equations of motion in which particles interact through attractive covalent forces and short-range repulsion forces. Also, we present an interactive virtual visualization tool for the simulation of atomic scale material behavior. An application of this research is to understand the processes that can control the quality of a single-crystal Si grown from the melt. read less NOT USED (high confidence) D. Alfonso and S. Ulloa, “Simulation of hyperthermal deposition of Si and C on SiC surfaces,” Applied Physics Letters. 1999. link Times cited: 4 Abstract: We describe the adsorption dynamics of Si and C atoms at sup… read moreAbstract: We describe the adsorption dynamics of Si and C atoms at supersonic velocities on Si- and C-terminated 6H–SiC(0001) substrates using molecular dynamics simulations. The sticking probabilities of adatoms are found to be very high and not to change substantially with increasing incident kinetic energy. We identify two mechanisms responsible for the high sticking probabilities of the adatoms: (a) efficient transfer of adatom energy to the substrate and (b) strong attractive forces experienced by the impinging adatom over the entire surface. The calculated potential energy surfaces reveal possible binding sites of the adatoms on the substrates. read less NOT USED (high confidence) S. Ramalingam, D. Maroudas, and E. Aydil, “Interactions of SiH radicals with silicon surfaces: An atomic-scale simulation study,” Journal of Applied Physics. 1998. link Times cited: 53 Abstract: A comprehensive study is presented of the interactions of Si… read moreAbstract: A comprehensive study is presented of the interactions of SiH radicals originating in silane containing plasmas with crystalline and amorphous silicon surfaces based on a detailed atomic-scale analysis. The hydrogen concentration on the surface is established to be the main factor that controls both the surface reaction mechanism and the reaction probability; other important factors include the location of impingement of the radical on the surface, as well as the molecular orientation of the radical with respect to the surface. On the ordered crystalline surfaces, the radical reacts in such a way as to maximize the number of Si–Si bonds it can form even if such bond formation requires dissociation of the radical and introduction of defects in the crystal structure. The radical is established to be fully reactive with the pristine Si(001)-(2×1) surface. This chemical reactivity is reduced significantly for the corresponding H-terminated surface with a hydrogen coverage of one monolayer. SiH is found to be ... read less NOT USED (high confidence) W. Sekkal, B. Bouhafs, H. Aourag, and M. Certier, “Molecular-dynamics simulation of structural and thermodynamic properties of boron nitride,” Journal of Physics: Condensed Matter. 1998. link Times cited: 112 Abstract: Structural and thermodynamic properties of cubic boron nitri… read moreAbstract: Structural and thermodynamic properties of cubic boron nitride (c-BN) under pressure and for varying temperature are studied by molecular-dynamics (MD) simulation with the use of a well-tested Tersoff potential. Various physical quantities including the thermal expansion coefficient and heat capacity are predicted. Our simulation is extended to study liquid boron nitride at various densities. read less NOT USED (high confidence) L. G. Ferreira and M. Boselli, “A model for relaxation in intermetallic compounds,” Journal of Physics: Condensed Matter. 1997. link Times cited: 0 Abstract: We use the density functional inspired model for alloying an… read moreAbstract: We use the density functional inspired model for alloying and lattice vibrations to study the relaxation of the intermetallic binary systems Ni - Al and Cu - Au. In one case the data set is made up of first-principles results for the intermetallics in their cubic form. In the other case the data set is mostly experimental. The parametrization is performed in the direct space and it resembles a parametrization for an Ising Hamiltonian, though with distance dependent pair interactions. In both cases three-body and many-body interactions were not needed, and the pair interactions did not go beyond the second-neighbour shell. read less NOT USED (high confidence) E. Chason et al., “Ion beams in silicon processing and characterization,” Journal of Applied Physics. 1997. link Times cited: 248 Abstract: General trends in integrated circuit technology toward small… read moreAbstract: General trends in integrated circuit technology toward smaller device dimensions, lower thermal budgets, and simplified processing steps present severe physical and engineering challenges to ion implantation. These challenges, together with the need for physically based models at exceedingly small dimensions, are leading to a new level of understanding of fundamental defect science in Si. In this article, we review the current status and future trends in ion implantation of Si at low and high energies with particular emphasis on areas where recent advances have been made and where further understanding is needed. Particularly interesting are the emerging approaches to defect and dopant distribution modeling, transient enhanced diffusion, high energy implantation and defect accumulation, and metal impurity gettering. Developments in the use of ion beams for analysis indicate much progress has been made in one-dimensional analysis, but that severe challenges for two-dimensional characterization remain. The ... read less NOT USED (high confidence) J. Torras, J. Ricart, P. Vilarrubias, and J. Fraxedas, “Cluster model study of the chemisorption of atomic carbon on Si(100) surfaces,” Journal of Crystal Growth. 1997. link Times cited: 3 NOT USED (high confidence) F. Liu, C. Salling, and M. Lagally, “Unique edge structure and stability of fabricated dimer islands on Si(001),” Surface Science. 1997. link Times cited: 0 NOT USED (high confidence) M. Caturla, T. D. Rubia, L. A. Marqués, and G. Gilmer, “Ion-beam processing of silicon at keV energies: A molecular-dynamics study.,” Physical review. B, Condensed matter. 1996. link Times cited: 196 Abstract: We discuss molecular-dynamics simulations of ion damage in s… read moreAbstract: We discuss molecular-dynamics simulations of ion damage in silicon, with emphasis on the effects of ion mass and energy. We employ the Stillinger-Weber potential for silicon, suitably modified to account for high-energy collisions between dopant-silicon and silicon-silicon pairs. The computational cells contain up to 10{sup 6} atoms and these are bombarded by B and As atoms at incident energies from 1 keV up to 15 keV. We show that the displacement cascade results in the production of amorphous pockets as well as isolated point defects and small clusters with populations which have a strong dependence on ion mass and a weaker relationship to the ion energy. We show that the total number of displaced atoms agrees with the predictions of binary collision calculations for low-mass ions, but is a factor of 2 larger for heavy-ion masses. We compare the simulations to experiments and show that our results provide a clear and consistent physical picture of damage production in silicon under ion bombardment. We studied the stability of the damage produced by heavy ions at different temperatures and the nature of the recrystallization mechanism. The inhomogeneous nature of the damage makes the characterization of the process through a single activation energymore » very difficult. An {ital effective} activation energy is found depending on the pocket size. We discuss our results considering the Spaepen-Turnbull recrystallization model for an amorphous-crystalline planar interface. {copyright} {ital 1996 The American Physical Society.}« less read less NOT USED (high confidence) M. Ichimura, “Stillinger-Weber potentials for III-V compound semiconductors and their application to the critical thickness calculation for InAs/GaAs,” Physica Status Solidi (a). 1996. link Times cited: 52 Abstract: Parameters in the Stillinger-Weber interatomic potentials ar… read moreAbstract: Parameters in the Stillinger-Weber interatomic potentials are obtained for III–V compounds from the cohesive energy, the lattice constant, and the elastic properties. The obtained potentials coincide with the Keating potentials for small distortion (<1%) but are more accurate for larger distortion. Using the SW potentials, the critical thickness of misfit dislocation nucleation is calculated for InAs/(001)GaAs. The critical thickness is 5 ML for a 60° dislocation and 2 ML for an edge dislocation. These thicknesses are smaller than those calculated using the Keating potentials. Results obtained by the classical elastic theory do not agree with the present results. read less NOT USED (high confidence) A. A. Valuev, A. S. Kaklyugin, and H. E. Norman, “Molecular modelling of the chemical interaction of atoms and molecules with a surface,” Russian Chemical Reviews. 1995. link Times cited: 3 Abstract: The modelling of a surface as an assembly of moving atoms in… read moreAbstract: The modelling of a surface as an assembly of moving atoms interacting with one another and with an incident particle is examined. Both dynamic methods for the modelling of a surface (for short times) and probability methods (for long times) are analysed. The Massey adiabaticity criterion has been used to determine the regions of applicability of the methods of molecular dynamics. Within the framework of probability methods, the chemical bond is described with the aid of Harrison's generalised periodic system of the elements. Together with the general modeling problems, the reconstruction of the surface, physical and chemical sorption, as well as the modification of the surface and of its morphology as a result of the multiple repetition of elementary processes (precipitation, etching, corrosion) are discussed. The bibliography includes 169 references. read less NOT USED (high confidence) C. Yoon and J. Megusar, “Molecular dynamic simulation of amorphous carbon and graphite interface,” Interface Science. 1995. link Times cited: 8 NOT USED (high confidence) H. Yan, X. Hu, and H. Jónsson, “Atomic structure of β-SiC( 100) surfaces: a study using the Tersoff potential,” Surface Science. 1994. link Times cited: 24 NOT USED (high confidence) R. Jones, A. Umerski, P. Sitch, M. Heggie, and S. Öberg, “Density functional calculations of the structure and properties of impurities and dislocations in semiconductors,” Physica Status Solidi (a). 1993. link Times cited: 20 NOT USED (high confidence) R. Jones, A. Umerski, P. Sitch, M. Heggie, and S. Öberg, “First‐Principles Calculations of Dislocations in Semiconductors,” Physica Status Solidi (a). 1993. link Times cited: 23 Abstract: The structure of dislocations in semiconductors and the effe… read moreAbstract: The structure of dislocations in semiconductors and the effect of their interaction with impurities are examined using an ab initio local density functional cluster method. This method is entirely free from any empirical parameters and takes account of the charge transfer between the impurity and the host as well as the forces acting on core atoms. It is found that dislocations in Si are strongly reconstructed but B, P, N, and As impurities destroy this reconstruction. C impurities have little effect. Oxygen atoms form clusters which aggregate near dislocation cores and also lead to strong pinning effects. These results explain the strong pinning effects attributed to these impurities. In GaAs, β-dislocations are strongly reconstructed but α-dislocations are not. read less NOT USED (high confidence) L. Yang, E. Brooks, and J. Belak, “A Linked-Cell Domain Decomposition Method for Molecular Dynamics Simulation on a Scalable Multiprocessor,” Sci. Program. 1992. link Times cited: 7 Abstract: A molecular dynamics algorithm for performing large-scale si… read moreAbstract: A molecular dynamics algorithm for performing large-scale simulations using the Parallel C Preprocessor (PCP) programming paradigm on the BBN TC2000, a massively parallel computer, is discussed. The algorithm uses a linked-cell data structure to obtain the near neighbors of each atom as time evoles. Each processor is assigned to a geometric domain containing many subcells and the storage for that domain is private to the processor. Within this scheme, the interdomain (i.e., interprocessor) communication is minimized. read less NOT USED (high confidence) A. Moradi, A. Heidari, K. Amini, F. Aghadavoudi, and R. Abedinzadeh, “Molecular modeling of Ti-6Al-4V alloy shot peening: the effects of diameter and velocity of shot particles and force field on mechanical properties and residual stress,” Modelling and Simulation in Materials Science and Engineering. 2021. link Times cited: 12 Abstract: Shot peening is a surface treatment process that is used for… read moreAbstract: Shot peening is a surface treatment process that is used for the improvement of the mechanical properties of metallic alloys. The effects of sphere particle diameter and impact velocity on residual stress and mechanical properties of Ti-6Al-4V as titanium alloy are investigated in this study using molecular dynamics simulation. In this research, titanium atoms are simulated as a surface layer and the carbon steel atomic structure is modeled as the impacting particle in the shot peening process. Two types of molecular potential functions including embedded atom method (EAM) and Lennard-Jones (LJ) are used for molecular modeling of colliding atoms and the effect of these force fields on residual stress, hardness, surface roughness is investigated. Moreover, the effects of impacting particle velocity and diameter on these parameters are studied. The results show the amount of residual stress in the titanium surface layer increased by increasing the particle diameter and velocity of particles. The diameter and velocity of particles in the shot peening process has a significant effect on the mechanical behavior of the simulated titanium surface layer. The value of maximum compressive residual stress is −413 MPa which occurs in depth of 10 Å from the surface layer for 1 Å fs−1 velocity and 10 Å diameter of shot particle. Furthermore, the results show that the Vickers hardness of the titanium is increased by increasing the size and velocity of the carbon steel particle in both EAM and LJ potential functions. read less NOT USED (high confidence) S. Sharma, P. Kumar, and R. Chandra, “Introduction to Molecular Dynamics,” Molecular Dynamics Simulation of Nanocomposites Using BIOVIA Materials Studio, Lammps and Gromacs. 2019. link Times cited: 22 NOT USED (high confidence) X. Luo and Z. Tong, “Nano-grooving by Using Multi-tip Diamond Tools.” 2018. link Times cited: 2 NOT USED (high confidence) Z. Zhang and H. Urbassek, “Indentation into an Al/Si composite: enhanced dislocation mobility at interface,” Journal of Materials Science. 2017. link Times cited: 21 NOT USED (high confidence) P. Budarapu et al., “Lattice orientation and crack size effect on the mechanical properties of Graphene,” International Journal of Fracture. 2016. link Times cited: 37 NOT USED (high confidence) M. Eftekhari and S. Mohammadi, “Multiscale dynamic fracture behavior of the carbon nanotube reinforced concrete under impact loading,” International Journal of Impact Engineering. 2016. link Times cited: 44 NOT USED (high confidence) M. Korayem, R. N. Hefzabad, A. Homayooni, and H. Aslani, “Investigation of geometrical effects in the carbon allotropes manipulation based on AFM: multiscale approach,” Journal of Nanoparticle Research. 2016. link Times cited: 3 NOT USED (high confidence) S. Urata and S. Li, “Higher order Cauchy–Born rule based multiscale cohesive zone model and prediction of fracture toughness of silicon thin films,” International Journal of Fracture. 2016. link Times cited: 18 NOT USED (high confidence) S. Lai, I. Setiyawati, T. Yen, and Y. H. Tang, “Studying lowest energy structures of carbon clusters by bond-order empirical potentials,” Theoretical Chemistry Accounts. 2016. link Times cited: 10 NOT USED (high confidence) M. Kan, Y. Li, and Q. Sun, “Recent advances in hybrid graphene‐BN planar structures,” Wiley Interdisciplinary Reviews: Computational Molecular Science. 2016. link Times cited: 29 Abstract: Among the hotly investigated two‐dimensional (2D) materials,… read moreAbstract: Among the hotly investigated two‐dimensional (2D) materials, the hybrid graphene‐BN sheet is of special interest in the single‐atomic sheet family. Since graphene and BN sheet are the two most widely studied 2D materials, and they have the least lattice mismatch with each other while exhibiting very distinctive properties. Therefore, the hybridization between them provides unique flexibilities in tuning the properties which can change from nonmagnetic to ferromagnetic and from semiconducting to half‐metallic. The most impressive trait is that different from the functionalized graphene and BN sheet by hydrogenation, fluorination, or metal doping for the band engineering, the hybrid graphene‐BN sheet with similar properties remains single‐atomic. The combinations of different patterns with different sizes make the hybrid sheet rich in functionalities going beyond other 2D materials. In this overview, we briefly summarize the recent advances in hybrid graphene‐BN sheet, focusing on the modulations of physical and chemical properties by changing the hybrid configurations. Future research directions in this field are also discussed. WIREs Comput Mol Sci 2016, 6:65–82. doi: 10.1002/wcms.1237 read less NOT USED (high confidence) A. Chatzopoulos, “Numerical Simulations of Metal-Oxides.” 2015. link Times cited: 0 Abstract: Oxides like silicates, alumina or periclase, are materials w… read moreAbstract: Oxides like silicates, alumina or periclase, are materials with significant properties and are therefore investigated extensively in experiment and in theory. The aim of this PhD thesis was to propose and further to develop methods, which make molecular dynamic simulations of oxides with large particle numbers and for long simulation times possible.
The work consists of three parts. In the first one the already existing methods for simulating oxides will be discussed, while in the second one their methodological progress will be presented. The third chapter is solely reserved for the phenomenon of flexoelectricity, which has been discovered during the visualization of the crack propagation in alumina.
Oxide, wie z.B. Silikate, Korund oder Periklas, sind bedeutende Funktionswerkstoffe und werden daher experimentell wie theoretisch intensiv untersucht. Ziel dieser Dissertation war es, Verfahren vorzustellen und derart zu optimieren, dass sie Molekulardynamiksimulationen von Oxiden mit grosen Teilchenzahlen und uber lange Zeiten ermoglichen.
Die Arbeit gliedert sich dabei in drei Bereiche. Im ersten Teil wird auf die einzelnen bereits vorhandenen Methoden zur Simulation von Oxiden eingegangen, im zweiten Kapitel deren Verbesserung vorgestellt. Der dritte Bereich widmet sich ausschlieslich dem Phanomen der Flexoelektrizitat, welche durch die geschickte Visualisierung der Rissausbreitung in Korund entdeckt wurde. read less NOT USED (high confidence) R. Alsayegh, “Vision-augmented molecular dynamics simulation of nanoindentation,” Journal of Nanomaterials. 2015. link Times cited: 7 Abstract: We present a user-friendly vision-augmented technique to car… read moreAbstract: We present a user-friendly vision-augmented technique to carry out atomic simulation using hand gestures. The system is novel in its concept as it enables the user to directly manipulate the atomic structures on the screen, in 3D space using hand gestures, allowing the exploration and visualisation of molecular interactions at different relative conformations. The hand gestures are used to pick and place atoms on the screen allowing thereby the ease of carrying out molecular dynamics simulation in a more efficient way. The end result is that users with limited expertise in developing molecular structures can now do so easily and intuitively by the use of body gestures to interact with the simulator to study the system in question. The proposed system was tested by simulating the crystal anisotropy of crystalline silicon during nanoindentation. A long-range (Screened bond order) Tersoff potential energy function was used during the simulation which revealed the value of hardness and elastic modulus being similar to what has been found previously from the experiments. We anticipate that our proposed system will open up new horizons to the current methods on how an MD simulation is designed and executed. read less NOT USED (high confidence) V. Tewary, “Multiscale Green’s functions for modeling of nanomaterials.” 2015. link Times cited: 3 NOT USED (high confidence) C. Kerestes et al., “Strain Effects on Radiation Tolerance of Triple-Junction Solar Cells With InAs Quantum Dots in the GaAs Junction,” IEEE Journal of Photovoltaics. 2014. link Times cited: 21 Abstract: A comparison of quantum dot (QD) triple-junction solar cells… read moreAbstract: A comparison of quantum dot (QD) triple-junction solar cells (TJSCs) with the QD superlattice under tensile strain are compared with those under compressive strain and baseline devices to examine the effects of strain induced by the InAs QD layers in the middle junction. Theoretical results show samples with tensile-strained InAs QDs have lower defect formation energy while compressive-strained QDs have the greatest. Experimentally, it is found that tensile strain leads to degradation of i-region material at values of -706 ppm. Irradiating with 1-MeV electrons, TJSCs with tensile strain exhibit a faster degradation in Isc of the QD samples and slower degradation in Voc but overall faster degradation in efficiency compared with baseline TJSCs, regardless of the magnitude of tensile strain. Compressively strained QD TJSCs have similar degradation in Isc and slower degradation in Voc compared with baseline TJSCs. From this study, it is determined that a slightly compressive strain in the QD superlattice allows for the best performance pre- and postirradiation for QD TJSCs based upon AM0 IV and quantum efficiency measurements and analysis. Fabricating devices with improvements determined from samples with varying strain leads to QD TJSCs with better radiation tolerance in terms of power output for 5, 10, 15, and 20 layers of QDs. read less NOT USED (high confidence) M. Griebel, J. Hamaekers, and F. Heber, “A Bond Order Dissection ANOVA Approach for Efficient Electronic Structure Calculations.” 2014. link Times cited: 2 NOT USED (high confidence) J. Yeo, “Modeling and simulation of the structural evolution and thermal properties of ultralight aerogel and 2D materials.” 2014. link Times cited: 1 NOT USED (high confidence) X. Han and Y. Gan, “Investigation the complex dynamic evolvement mechanism of particle cluster and surface integrity in the chemical mechanical planarization,” The International Journal of Advanced Manufacturing Technology. 2013. link Times cited: 8 NOT USED (high confidence) S. Sonntag, “Computer simulations of laser ablation from simple metals to complex metallic alloys.” 2011. link Times cited: 10 Abstract: In this work, a method for computer simulations of laser abl… read moreAbstract: In this work, a method for computer simulations of laser ablation in metals is presented. The ambitious task to model the physical processes, that occur on different time and length scales, is overcome to some extent by the combination of two techniques: Molecular dynamics and finite differences. The former is needed to achieve atomistic resolution of the processes involved. Material failure like melting, vaporization or spallation occur on the atomic scale. Light absorption and electronic heat conduction, which plays the major role in metals, is described by a generalized heat conduction equation solved by the finite differences method. From the so-called Two-Temperature Model temperature, density and pressure evolution - both in time and space - can be derived. With this, various studies on laser heated metals were done. For reasons discussed in more detail later, aluminum was chosen as a model system for most simulations on isotropic materials. As a more complex structure, the metallic alloy Al13Co4 was used because of its special material properties. As an approximant to the decagonal phase of Al-Ni-Co, the alloy shows an anisotropy in its transport properties, e.g. an anisotropic heat conduction.
It will be shown, that the model is able to describe the physics in laser heated solids on time scales from 100 fs up to the ns-scale properly. Great insight was gained about the processes occuring during and shortly after the laser pulse. Many of the quantities interesting for experimentalists can be predicted by the theory. From the simulations relevant parameters like the electron-cooling time or the important ablation threshold were calculated. All values match their experimental counterpart very well.
Die vorliegende Arbeit beschaftigt sich mit der Laserablation in Metallen. Ziel ist es, mit Hilfe von numerischen Simulationen das Verhalten von Metallen nach der Bestrahlung mit intensiven Laserpulsen vorherzusagen. Die Arbeit ist inhaltlich in zwei Teile gegliedert. In der ersten Halfte werden theoretische Grundlagen, eine qualitative Beschreibung der Ablation und die Implementierung des Modells gegeben. Im zweiten Teil folgen Ergebnisse sowie, falls vorhanden, Vergleiche mit Experimenten. Die Arbeit schliest mit einer Zusammenfassung und einem Ausblick. read less NOT USED (high confidence) M. Hamdi and A. Ferreira, “Methodology of Design and Characterization of Bionano- and Nanorobotic Devices.” 2011. link Times cited: 1 NOT USED (high confidence) T. Dumitricǎ, “Computational Nanomechanics of Quasi-one-dimensional Structures in a Symmetry-Adapted Tight Binding Framework.” 2010. link Times cited: 2 NOT USED (high confidence) D. Schebarchov, “Mechanisms in Carbon Nanotube Growth: Modelling and Molecular Dynamics Simulations.” 2010. link Times cited: 0 Abstract: A selection of nanoscale processes is studied theoretically,… read moreAbstract: A selection of nanoscale processes is studied theoretically, with the aim of identifying themechanisms that could lead to selective carbon nanotube (CNT) growth. Only mechanisms relevant to catalytic chemical vapour deposition (CVD) are considered. The selected processes are analysed with classical molecular dynamics (MD) simulations and continuum modelling. The melting and pre-melting behaviour of supported nickel catalyst particles is investigated. Favourable epitaxy between a nanoparticle and the substrate is shown to significantly raise themelting point of the particle. It is also demonstrated that substrate binding can induce solid-solid transformations, whilst the epitaxy may even determine the orientation of individual crystal planes in supported catalysts. These findings suggest that the substrate crystal structure alone can potentially be used to manipulate the properties of catalyst particles and, hence, influence the structure of CNTs. The first attempt at modelling catalyst dewetting, a process where the catalyst unbinds from the inner walls of a nucleating nanotube, is presented. It is argued that understanding this process and gaining control over itmay lead to better selectivity in CNT growth. Two mutually exclusive dewetting mechanisms, namely cap lift-off and capillary withdrawal, are identified and then modelled as elastocapillary phenomena. The modelling yields an upper bound on the diameter of CNTs that can stem from a catalyst particle of a given size. It is also demonstrated that cap lift-off is sensitive to cap topology, suggesting that it may be possible to link catalyst characteristics to the structural properties of nucleating CNTs. However, a clear link to the chiral vector remains elusive. It is shown that particle size, as well as binding affinity, plays a critical role in capillary absorption and withdrawal of catalyst nanoparticles. This size dependence is explored in detail, revealing interesting ramifications to the statics and dynamics of capillary-driven flows at the nanoscale. The findings bear significant implications for our understanding of CNT growth from catalyst particles, whilst also suggesting new nanofluidic applications and methods for fabricating composite metal-CNT materials. read less NOT USED (high confidence) M. Ceriotti, “A novel framework for enhanced molecular dynamics based on the generalized Langevin equation.” 2010. link Times cited: 18 Abstract: The modeling of Brownian motion by Einstein and Langevin, at… read moreAbstract: The modeling of Brownian motion by Einstein and Langevin, at the beginning of the past century, can be regarded as start point of the systematic use of stochastic methods in physics and chemistry. Besides the theory of Brownian motion, stochastic methods have been applied to countless applications, including the sampling of canonical, constant-temperature ensemble in molecular dynamics simulations. In the vast majority of cases, the stochastic differential equations which are used as a physical model or as a computational tool are assumed to be Markovian, i.e. they are able to predict the stochastic evolution of the system based on a knowledge of its state at a single instant. On the other hand, many important developments can be derived by removing this assumption. In the Mori-Zwanzig theory, for instance, when one integrates out part of the dynamical variables from a Hamiltonian system, a non-Markovian stochastic equation for the remaining degrees of freedom arises, which contains finite-memory friction and noise. By changing the properties of the memory in this generalized Langevin equation (GLE), one can greatly influence the static and dynamic properties. In this thesis we developed a robust and flexible framework for exploiting this class of stochastic differential equations in order to enhance and modify almost at will the properties of a molecular dynamics trajectory. We begin by mapping the non-Markovian dynamics onto a Markovian one in an extended phase-space, as this is more convenient for both simulations and analytical derivations. We then show how a number of static and dynamic properties can be computed exactly in the case of a harmonic oscillator and how the predictions in this limit compare with the behavior of a real system. By performing a fitting procedure, we can then generate sets of parameters that impart to the stochastic dynamics the properties which are best suited to the sampling problem. When a set of independent GLEs is applied to the Cartesian coordinates of an ensemble of coupled oscillators, the response is as if the stochastic terms had been applied in normal mode representation. This is a consequence of the linear nature of the generalized Langevin equation we employ. This feature allows us to tune the properties as a function of the vibrational frequency of the (quasi-)harmonic modes, without the need to know any frequency and displacement pattern explicitly. This property has allowed us to develop and demonstrate many different applications. For instance, one can either enhance or degrade the efficiency of sampling of selected normal modes in constant-temperature simulations. One can then increase read less NOT USED (high confidence) V. V. Albert, J. Sabin, F. Harris, and F. Harris, “Simulations of Xe@C60 collisions with graphitic films,” International Journal of Quantum Chemistry. 2008. link Times cited: 3 Abstract: Collisions between Xe@C60 and sheets of graphite of various … read moreAbstract: Collisions between Xe@C60 and sheets of graphite of various dimensions were simulated. A Tersoff many-body potential modeled the interactions between carbon atoms and a Lennard-Jones potential simulated the xenon-carbon interactions. The simulations were compared to experiment and with simulations which implemented other potentials. The results indicate that a relatively small graphite film can be an accurate approximation for a nearly infinite sheet of graphite. © 2008 Wiley Periodicals, Inc. Int J Quantum Chem, 2008 read less NOT USED (high confidence) K. Scheerschmidt and M. Planck, “Empirical Molecular Dynamics: Possibilities, Requirements, and Limitations.” 2007. link Times cited: 9 NOT USED (high confidence) V. V. Albert, J. Sabin, and F. Harris, “Simulated structure and energetics of endohedral complexes of noble gas atoms in buckminsterfullerene,” International Journal of Quantum Chemistry. 2007. link Times cited: 18 Abstract: Classical molecular dynamics simulations were run for noble … read moreAbstract: Classical molecular dynamics simulations were run for noble gas atoms confined within a buckminsterfullerene cage. The simulations indicated that all the endohedral complexes X@C60 (X = He, Ne, Ar, Kr, Xe) were stable relative to C60 + X, with the Ar complex being the most stable. Except for the He complex, the minimum-energy configuration was with the endoatom at the geometric center of the cage. The minimum-energy position of the He atom in He@C60 was off-center in a high-symmetry direction, but the energy lowering relative to a centered He atom was found to be small relative to the zero-point energy of the He atom within the cage. The simulations were checked by comparison of static energy computations with the fullerene fixed in its equilibrium geometry as determined alternatively from experimental data and from empty-fullerene calculations. The small differences between the alternative geometries were sufficient to cause significant quantitative changes in the computed binding energies but, except for predicting Xe@C60 to be unstable, did not fundamentally alter our qualitative description of the results. © 2007 Wiley Periodicals, Inc. Int J Quantum Chem, 2007 read less NOT USED (high confidence) W. Smith, I. Todorov, and M. Leslie, “The DL_POLY molecular dynamics package,” Zeitschrift für Kristallographie - Crystalline Materials. 2005. link Times cited: 29 Abstract: The DL_POLY package provides a set of classical molecular dy… read moreAbstract: The DL_POLY package provides a set of classical molecular dynamics programs that have application over a wide range of atomic and molecular systems. Written for parallel computers they offer capabilities stretching from small systems consisting of a few hundred atoms running on a single processor, up to systems of several million atoms running on massively parallel computers with thousands of processors. In this article we describe the structure of the programs and some applications. read less NOT USED (high confidence) C. Tang and L. Zhang, “A molecular dynamics analysis of the mechanical effect of water on the deformation of silicon monocrystals subjected to nano-indentation,” Nanotechnology. 2004. link Times cited: 41 Abstract: This paper discusses the mechanical effect of water on the d… read moreAbstract: This paper discusses the mechanical effect of water on the deformation of silicon monocrystals under nano-indentation with the aid of molecular dynamics analysis. The rigid TIP4P model was used to simulate the interactions between water molecules while the long-ranged non-bonded Lennard-Jones potential was applied for the pairs of unlike molecules. It was found that upon loading water molecules are lodged into the cavities of the silicon substrate, causing subsurface damage. The diamond cubic structure in the indentation zone transforms into an amorphous state with a body-centred tetragonal form (β-silicon) below the indentor. The presence of water significantly reduces the indentor–silicon adhesion that alters the structure of the residual deformation zone after complete unloading. read less NOT USED (high confidence) M. Hane, T. Ikezawa, T. Matsuda, and S. Shishiguchi, “Simulation of high-temperature millisecond annealing-based on atomistic modeling of boron diffusion/activation in silicon,” IEDM Technical Digest. IEEE International Electron Devices Meeting, 2004. 2004. link Times cited: 8 Abstract: An advanced annealing technique.where high temperature is ap… read moreAbstract: An advanced annealing technique.where high temperature is applied for a ~ f ewm illiseconds was investigated through an atomistic process simulation program. In this basic study into the feasibility of this new annealing technique, our aim was to clarify what is happening under the ideal conceptual condition of high-temperature millisecond annealing. read less NOT USED (high confidence) L. Shen and Z. Chen, “An investigation of the effect of interfacial atomic potential on the stress transition in thin films,” Modelling and Simulation in Materials Science and Engineering. 2004. link Times cited: 2 Abstract: In order to better understand the mechanisms of tungsten (W)… read moreAbstract: In order to better understand the mechanisms of tungsten (W) film delamination from the silicon (Si) substrate, a three-dimensional molecular dynamics (MD) simulation is being conducted to investigate the formation of residual stress during the film deposition process. For the purpose of simplicity, a Morse pair potential is proposed in this paper to simulate the interactions between W and Si atoms during the film deposition process. It appears from numerical solutions that the residual stress field in the W film is very sensitive to the W–Si interfacial potential model proposed for the MD simulation. By calibrating the controlling parameters in the interfacial potential model using the comparison between the simulated stresses and experimental data, the film stress transition from tension to compression during the film deposition process could be qualitatively simulated via the proposed simulation procedure. The numerical results presented in this paper provide a better insight into the effect of interfacial atomic potential on the stress transition in thin films. In addition, it can be seen from the MD simulation that there might exist a phase transition from the crystalline Si to amorphous W–Si structure to crystalline W around the interface area. Well-designed experiments are required to verify the simulation results. read less NOT USED (high confidence) F. Gähler, C. Kohler, J. Roth, and H. Trebin, “Computation of Strain Distributions in Quantum Dot Nanostructures by Means of Atomistic Simulations.” 2003. link Times cited: 2 NOT USED (high confidence) G. Schaaf et al., “Simulation of Dislocations in Icosahedral Quasicrystals with IMD.” 2002. link Times cited: 2 NOT USED (high confidence) K. Scheerschmidt and P. Werner, “Characterization of Structure and Composition of Quantum Dots by Transmission Electron Microscopy.” 2002. link Times cited: 16 NOT USED (high confidence) E. Bitzek et al., “Recent Developments in IMD: Interactions for Covalent and Metallic Systems.” 2001. link Times cited: 11 NOT USED (high confidence) X. Su, “Indium Arsenide/Gallium Arsenide Quantum Dots and Nanomesas: Multimillion-Atom Molecular Dynamics Solutions on Parallel Architectures.” 2001. link Times cited: 0 Abstract: Multimillion-atom molecular dynamics (MD) simulations have b… read moreAbstract: Multimillion-atom molecular dynamics (MD) simulations have been performed to study the flat InAs overlayers with self-limiting thickness on GaAs square nanomesas. The in-plane lattice constant of InAs layers parallel to the InAs/GaAs(001) interface starts to exceed the InAs bulk value at 12th monolayer (ML) and the hydrostatic stresses in InAs layers become tensile above ~ 12th ML. As a result, it is not favorable to have InAs overlayers thicker than 12 ML. This may explain the experimental findings of the growth of flat InAs overlayers with self-limiting thickness of ~ 11 ML on GaAs nanomesas. We have also examined the lateral size effects on the stress distribution and morphology of InAs/GaAs square nanomesas using parallel molecular dynamics. Two mesas with the same vertical size but different lateral sizes are simulated. For the smaller mesa, a single stress domain is observed in the InAs overlayer, whereas two stress domains are found in the larger mesa. This indicates the existence of a critical lateral size for domain formation in accordance with recent experimental findings. The InAs overlayer in the larger mesa is laterally constrained to the GaAs bulk lattice constant but vertically relaxed to the InAs bulk lattice constant, consistent with the Poisson effect. Moreover, we have calculated surface energies of GaAs and InAs for the (100), (110), and (111) orientations. Both MD and the conjugate gradient method are used and the results are in excellent agreement. Surface reconstructions on GaAs(lOO) and InAs(IOO) are studied via the conjugate gradient method. We have developed a new model for GaAs(lOO) and InAs(lOO) surface atoms. Not only this model reproduces well the surface energies for the (100) orientation, it also yields (1x2) dimer lengths in accordance with Ab initio calculations. Finally, a series of molecular dynamics simulations are performed to investigate the behavior under load of several <001> and <011> symmetrical tilt grain boundaries read less NOT USED (high confidence) J. Dong, O. Sankey, C. Myles, G. Ramachandran, P. McMillan, and J. Gryko, “Theoretical evaluation of the thermal conductivity in framework (clathrate) semiconductors.” 2000. link Times cited: 2 Abstract: We have calculated the room temperature thermal conductivity… read moreAbstract: We have calculated the room temperature thermal conductivity in semiconductor germanium clathrates using statistical linear-response theory and an equilibrium molecular dynamics (MD) approach. A key step in our study is to compute a realistic heat-current J (t) and a corresponding auto-correlation function . To ensure convergence of our results and to minimize statistical fluctuations in our calculations, we have constructed large super-cell models (2944 atoms) and have performed several independent long time simulations (<1,500 ps in each simulation). Our results show an unexpected "oscillator" character in the heat-current correlation function of the guest-free Ge clathrate frameworks. This is absent in the denser diamond phase and other with simple structural frameworks. We seek to interpret these results using lattice dynamics information. A study of the effects of the so-called "rattling" guest atoms in the open-framework clathrate materials is in progress. read less NOT USED (high confidence) J. Dabrowski, H. Müssig, M. Duane, S. Dunham, R. Goossens, and H. Vuong, “Basic science and challenges in process simulation.” 1999. link Times cited: 11 NOT USED (high confidence) L. Porter, S. Yip, M. Yamaguchi, H. Kaburaki, and M. Tang, “EMPIRICAL BOND-ORDER POTENTIAL DESCRIPTION OF THERMODYNAMIC PROPERTIES OF CRYSTALLINE SILICON,” Journal of Applied Physics. 1997. link Times cited: 67 Abstract: Thermodynamic properties of silicon (diamond cubic phase) ar… read moreAbstract: Thermodynamic properties of silicon (diamond cubic phase) are calculated using an empirical many-body potential developed by Tersoff [Phys. Rev. Lett. 56, 632 (1986)] based on the concept of bond order. It is shown that this model gives predictions in good agreement with experiment for those properties governed by energetics (free energy, entropy, and heat capacity). The thermal expansion coefficient is less well described, which is traced to the fact that the model potential, in its present version, is overly stiff and therefore unable to account properly for the volume dependence of the transverse acoustic modes. Furthermore, sensitivity of the potential to whether each atom remains bonded to only four neighbors indicates that the short-range nature of the potential may necessitate model improvement before it is suitable for studies of thermomechanical properties at elevated temperatures or large deformations. read less NOT USED (high confidence) A. Omeltchenko, “Nanoscale Structures and Fracture Processes in Advanced Ceramics: Million-Atom MD Simulations on Parallel Architectures.” 1997. link Times cited: 0 Abstract: Properties and processes in silicon nitride and graphite are… read moreAbstract: Properties and processes in silicon nitride and graphite are investigated using molecular-dynamics (MD) simulations. Scalable and portable multiresolution algorithms are developed and implemented on parallel architectures to simulate systems containing 106 atoms interacting via realistic potentials. Structural correlations, mechanical properties, and thermal transport are studied in microporous silicon nitride as a function of density. The formation of pores is observed when the density is reduced to 2.6 g/cc, and the percolation occurs at a density of 2.0 g/cc. The density variation of the thermal conductivity and the Young’s modulus are well described by power laws with scaling exponents of 1.5 and 3.6, respectively. Dynamic fracture in a single graphite sheet is investigated. For certain crystalline orientations, the crack becomes unstable with respect to branching at a critical speed of -60% of the Rayleigh velocity. The origin of the branching instability is investigated by calculating local-stress distributions. The branched fracture profile is characterized by a roughness exponent, a 0.7, above a crossover length of 50A. For smaller length scales and within the same branch, a 0.4. Crack propagation is studied in nanophase silicon nitride prepared by sintering nanoclusters of size 60A. The system consists of crystalline cluster interiors, amorphous intercluster regions, and isolated pores. These microstructures cause crack branching and meandering, and the clusters undergo significant rearrangement due to plastic deformation of interfacial regions. As a result, the system can withstand enormous deformation (30%). In contrast, a crystalline sample in the same geometry cleaves under an applied strain of only 3%. read less NOT USED (high confidence) H. Rafii-Tabar, A. Tambyrajah, H. Kamiyama, and Y. Kawazoe, “Molecular dynamics simulation of observed and alignments on the Si(100) reconstructed surface,” Modelling and Simulation in Materials Science and Engineering. 1996. link Times cited: 2 Abstract: We have implemented a large-scale classical molecular dynami… read moreAbstract: We have implemented a large-scale classical molecular dynamics simulation at constant temperature to provide a theoretical insight into the results of a recently performed experiment on the monolayer and multi-layer formations of molecular films on the Si(100) reconstructed dimerized surface. Our simulation has successfully reproduced all of the morphologies observed on the monolayer film by this experiment. We have obtained the formation of both c(4 4) and c(4 3) structures of the molecules and have also obtained phase transitions of the former into the latter. read less NOT USED (high confidence) L. Miller, D. Brice, A. Prinja, and S. T. Picraux, “Anisotropic displacement threshold energies in silicon by molecular dynamics simulations,” MRS Proceedings. 1990. link Times cited: 4 Abstract: A combination of molecular dynamics simulations and theoreti… read moreAbstract: A combination of molecular dynamics simulations and theoretical modeling was used to examine the orientation dependent threshold energies for displacement of silicon atoms from their lattice site due to energetic particle collisions. These results are important for a detailed understanding of both radiation effects in silicon devices and beam-enhanced stimulation of molecular beam epitaxial growth. The molecular dynamics code developed for this study, which employs a Tersoff interaction potential, as well as the theoretical model that incorporates the symmetry of the crystal are described. Bulk displacement threshold energies were determined by the molecular dynamics code for four directions through the open face in the {l angle}111{r angle}. These values were then incorporated into the theoretical model for the average bulk displacement threshold energy. The average bulk displacement threshold energy was found to be 14.8 eV in 30{degree} about {l angle}111{r angle} and 11.1 eV in 20{degree} about {l angle}100{r angle}. read less
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